FlyBase Gene Report: Dmel\RpS20

General Information

Symbol

Dmel\RpS20

Species

D. melanogaster

Name

Ribosomal protein S20

Annotation Symbol

CG15693

Feature Type

protein_coding_gene

FlyBase ID

FBgn0019936

Gene Model Status

Current

Stock Availability

5 publicly available

Gene Summary

Contribute a Gene Snapshot for this gene.

All Summaries

Alliance
Auto summary
Gene Group
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

93A1-93A1

Sequence location

3R:20,822,181..20,823,356 [+]

Recombination map

3-69

RefSeq locus

NT_033777 REGION:20822181..20823356

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (8 terms)

Molecular Function (2 terms)

Terms Based on Experimental Evidence (1 term)

CV Term

Evidence

References

enables structural constituent of ribosome

inferred from direct assay

(Anger et al., 2013)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

enables RNA binding

inferred from electronic annotation with InterPro:IPR018268

(InterPro Project Members, 2004-)

enables structural constituent of ribosome

non-traceable author statement

(Chan et al., 1997)

inferred from biological aspect of ancestor with PANTHER:PTN000193512

(GO Reference Genome Project, 2011-)

inferred from electronic annotation with InterPro:IPR001848, InterPro:IPR005729, InterPro:IPR018268

(InterPro Project Members, 2004-)

traceable author statement

(Marygold et al., 2007)

Biological Process (2 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

involved_in cytoplasmic translation

inferred by curator from GO:0022626

(Anger et al., 2013)

traceable author statement

(Marygold et al., 2007)

involved_in translation

inferred from electronic annotation with InterPro:IPR001848, InterPro:IPR005729, InterPro:IPR018268

(InterPro Project Members, 2004-)

non-traceable author statement

(Chan et al., 1997)

Cellular Component (4 terms)

Terms Based on Experimental Evidence (1 term)

CV Term

Evidence

References

located_in cytosolic ribosome

inferred from direct assay

(Anger et al., 2013)

Terms Based on Predictions or Assertions (3 terms)

CV Term

Evidence

References

part_of cytosolic small ribosomal subunit

inferred from biological aspect of ancestor with PANTHER:PTN000193513

(GO Reference Genome Project, 2011-)

traceable author statement

(Marygold et al., 2007)

located_in ribosome

inferred from electronic annotation with InterPro:IPR001848, InterPro:IPR018268

(InterPro Project Members, 2004-)

part_of small ribosomal subunit

inferred from electronic annotation with InterPro:IPR005729

(InterPro Project Members, 2004-)

non-traceable author statement

(Chan et al., 1997)

Gene Group (FlyBase)

CYTOPLASMIC SMALL RIBOSOMAL PROTEINS

Protein Family (UniProt)

Belongs to the universal ribosomal protein uS10 family. (P55828)

Protein Signatures (InterPro)

Summaries

Gene Group (FlyBase)

CYTOPLASMIC SMALL RIBOSOMAL PROTEINS -: Cytoplasmic ribosomes are found on the endoplasmic reticulum and in the cytoplasm. They translate all mRNAs produced from nuclear genes and perform the majority of cellular protein synthesis. Ribosomes are formed by two ribonucleoprotein subunits, large and small. The principle function of the small subunit is to bind mRNA. (Adapted from FBrf0205398)

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\RpS20 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry P55828)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

PDB - An information portal to biological macromolecular structures

Comments on Gene Model

Gene model reviewed during 5.43

Gene model reviewed during 5.47

Low-frequency RNA-Seq exon junction(s) not annotated.

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

RpS20-RA

FBtr0083964

NM_079697

564

120

Additional Transcript Data and Comments

Reported size (kB)

0.524 (unknown)

(Chan et al., 1997)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

RpS20-PA

FBpp0083371

13.5

120

11.08

P55828

NP_524421

AAF55809

Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments

Reported size (kDa)

120 (aa); 13 (kD predicted)

(Chan et al., 1997)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

PDB - An information portal to biological macromolecular structures

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

P55828

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\RpS20 using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

RpS20_1

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-0.94

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage

organism | ubiquitous

(Chan et al., 1997)

embryonic stage 1 -- 3

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 4 -- 6

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 7 -- 8

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 9 -- 10

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 11 -- 12

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 13 -- 16

organism | ubiquitous

(Fisher et al., 2012)

Additional Descriptive Data

RpS20 is expressed ubiquitously in embryos. It is expressed particularly strongly in the midgut.

(Chan et al., 1997)

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult head

• membrane

(Aradska et al., 2015)

day 7 of adulthood -- day 49 of adulthood

adult heart

(Cammarato et al., 2011)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

located_in cytosolic ribosome

inferred from direct assay

(Anger et al., 2013)

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\RpS20 in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\RpS20

View exonic expression by tissue for Dmel\RpS20

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0019936

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

42464/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0019936

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0019936

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0019936

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG15693

Flygut - An atlas of the Drosophila adult midgut

FBgn0019936

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 2 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 6 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of RpS20

Transgenic constructs containing regulatory region of RpS20

Aberrations (Deficiencies and Duplications) ( 4 )

Inferred from experimentation ( 4 )

Gene disrupted in

Df(3R)BSC43

(Marygold et al., 2007)

Df(3R)d06796-f03502

(Ji et al., 2021)

Df(3R)d06928-f01700

(Ji et al., 2021)

Df(3R)d06928-f03502

(Ji et al., 2021)

Inferred from location ( 1 )

Df(3R)BSC43

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

RpS20^GD8579

lethal, with Scer\GAL4^pnr-MD237

RpS20^GD8579

lethal, with Scer\GAL4^tin.CΔ4

RpS20^GD8579

lethal - all die during larval stage, with Scer\GAL4^Mef2.PR

RpS20^GD8579

Other Phenotypes

Allele

decreased size | adult stage

RpS20^Ebox

Phenotype manifest in

Allele

larval somatic muscle cell, with Scer\GAL4^Mef2.PR

RpS20^GD8579

scutellar bristle

RpS20^Ebox

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (2)

Hsap\RPS20

14 of 14

Yes

Hsap\MRPS10

2 of 14

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (11)

Rnor\Rps20

14 of 14

Yes

Rnor\LOC100362149

13 of 14

Yes

Rnor\LOC100362684

13 of 14

Yes

Rnor\LOC100359951

12 of 14

Yes

Rnor\LOC100359563

11 of 14

Yes

Rnor\LOC100364116

11 of 14

Yes

Rnor\RGD1563124

11 of 14

Yes

Rnor\LOC100361148

2 of 14

Yes

Rnor\RGD1562259

2 of 14

Yes

Rnor\LOC100909911

1 of 14

Yes

Rnor\Mrps10

1 of 14

Mus musculus (laboratory mouse) (2)

Mmus\Rps20

13 of 14

Yes

Mmus\Mrps10

2 of 14

Xenopus tropicalis (Western clawed frog) (3)

Xtro\rbm6

7 of 13

Yes

Xtro\mrps10

1 of 13

Xtro\rab3gap1

1 of 13

Danio rerio (Zebrafish) (2)

Drer\mrps10

2 of 14

Yes

Drer\rps20

2 of 14

Yes

Caenorhabditis elegans (Nematode, roundworm) (2)

Cele\rps-20

14 of 14

Yes

Cele\mrps-10

1 of 14

Anopheles gambiae (African malaria mosquito) (2)

Agam\AgaP_AGAP010591

12 of 12

Yes

Agam\AgaP_AGAP001998

2 of 12

Arabidopsis thaliana (thale-cress) (4)

Atha\AT3G45030

13 of 13

Yes

Atha\AT3G47370

13 of 13

Yes

Atha\AT5G62300

13 of 13

Yes

Atha\AT3G13120

2 of 13

Saccharomyces cerevisiae (Brewer's yeast) (2)

Scer\RPS20

13 of 13

Yes

Scer\RSM10

3 of 13

Yes

Schizosaccharomyces pombe (Fission yeast) (2)

Spom\rps20

12 of 12

Yes

Spom\rsm10

3 of 12

Escherichia coli (enterobacterium) (1)

Ecol\rpsJ

8 of 11

Yes

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:RpS20. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (1)

mRpS10

2 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

RPS20; ribosomal protein S20

14 of 14

603682

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please see the Physical Interaction reports below for full details

protein-protein

Physical Interaction

Assay

References

RpS20 - CG17186

two hybrid

(Hu et al., 2017.6.13)

RpS20 - Dsor1

anti tag coimmunoprecipitation, peptide massfingerprinting

(Friedman et al., 2011)

RpS20 - EndoB

two hybrid

(Hu et al., 2017.6.13)

RpS20 - Rack1

cosedimentation, electron microscopy

(Anger et al., 2013)

RpS20 - RpL10

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL10Ab

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL11

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL12

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL13

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL13A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL14

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL15

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL17

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL18

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL18A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL19

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL21

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL22

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL23

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL23A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL24

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL26

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL27

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL27A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL28

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL29

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL3

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL30

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL31

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL32

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL34a

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL35

cosedimentation, electron microscopy

(Anger et al., 2013)

RpS20 - RpL35A

cosedimentation, electron microscopy

(Anger et al., 2013)

RpS20 - RpL36

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL36A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL37-1

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL37A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL38

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL39

cosedimentation, electron microscopy

(Anger et al., 2013)

RpS20 - RpL4

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL40

cosedimentation, electron microscopy

(Anger et al., 2013)

RpS20 - RpL41

cosedimentation, electron microscopy

(Anger et al., 2013)

RpS20 - RpL5

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL6

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL7

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL7A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL8

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpL9

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpLP0

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpLP1

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpLP2

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS10a

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS11

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS12

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS13

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS14a

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS14b

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS15

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS15Aa

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS16

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS17

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS18

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS19a

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS2

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS21

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS23

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS24

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS25

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS26

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS27

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS27A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS28b

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS29

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS3

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS30

cosedimentation, electron microscopy

(Anger et al., 2013)

RpS20 - RpS3A

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS4

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS5a

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS6

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS7

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS8

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - RpS9

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - eEF2

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - l(2)05714

two hybrid

(Hu et al., 2017.6.13)

RpS20 - sta

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RpS20 - vig2

cosedimentation, Identification by mass spectrometry, electron microscopy

(Anger et al., 2013)

RNA-protein

Physical Interaction

Assay

References

RpS20 - 18SrRNA

cosedimentation, electron microscopy

(Anger et al., 2013)

RpS20 - 28SrRNA

cosedimentation, electron microscopy

(Anger et al., 2013)

RpS20 - 2SrRNA

cosedimentation, electron microscopy

(Anger et al., 2013)

RpS20 - 5.8SrRNA

cosedimentation, electron microscopy

(Anger et al., 2013)

RpS20 - 5SrRNA

cosedimentation, electron microscopy

(Anger et al., 2013)

Summary of Genetic Interactions

Interaction Browsers

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

BioGRID - A database of protein and genetic interactions.

67437

DroID - A comprehensive database of gene and protein interactions.

FBgn0019936

MIST (protein-protein) - An integrated Molecular Interaction Database

42464

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

KEGG Pathways - A collection of manually drawn pathway maps representing knowledge of molecular interaction, reaction and relation networks.

Ribosome

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Class of Gene

nuclear_gene

protein_coding_gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

3-69

Cytogenetic map

93A1-93A1

Sequence location

3R:20,822,181..20,823,356 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

93A1-93A1

Limits computationally determined from genome sequence between P{PZ}l(3)10585¹⁰⁵⁸⁵ and P{EP}Synd^EP409

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

92F-93A

(Chan, 1997.2.6)

92F-93A

(determined by in situ hybridisation)

(Chan et al., 1997)

Experimentally Determined Recombination Data

Location

3-69

(FlyBase, 2016)

3-73.0

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (5)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

95526

w^*; P{neoFRT}82B TI{TI}RpS20^Ebox/TM3, P{ActGFP}JMR2, Ser¹

FlyORF

F001537

M{UAS-RpS20.ORF}ZH-86Fb

F000754

M{UAS-RpS20.ORF.3xHA}ZH-86Fb

VDRC

v105298

P{KK109024}VIE-260B

v32383

w¹¹¹⁸; P{GD8579}v32383

Genomic Clones (9)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (230)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0019936

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0019936

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Likely Minute gene.

(Marygold et al., 2007)

A deletion that removes RpS20 and RpS30 but no other cytoplasmic ribosomal protein-encoding genes shows Minute phenotypes.

(Marygold et al., 2007)

Cloning of a ribosomal protein that is conserved between eukaryotes, prokaryotes and archaebacteria.

(Chan et al., 1997)

Relationship to Other Genes

Source for database merge of

Additional comments

"RpS20" is one of two genes (the other is "RpS30") that may correspond to "M(3)93A".

(Marygold et al., 2007)

Nomenclature History

Source for database identify of

Nomenclature comments

Etymology

Synonyms and Secondary IDs (10)

Reported As

Symbol Synonym

CG15693

(Kolkhof et al., 2017, Rosa-Ferreira et al., 2015, Fukuoh et al., 2014, Schertel et al., 2013, Jaspers et al., 2012, Cammarato et al., 2011, Keleman et al., 2009.8.5, Marygold et al., 2007, Cermelli et al., 2006, Huang et al., 2005)

Rps20

(Ponton et al., 2011)

S10

(Anger et al., 2013)

anon-EST:Posey111

anon-EST:Posey122

anon-EST:Posey147

rps20

(Frat et al., 2023)

Name Synonyms

Ribosomal protein S20

(Jaspers et al., 2012, Cammarato et al., 2011)

ribosomal protein S20

(Chan, 1997.2.6)

Secondary FlyBase IDs

FBgn0025315
FBgn0025320
FBgn0025322

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 58 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

42464

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

P55828

UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information

P55828

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

P55828

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0019936

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

42464/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0019936

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0019936

FlyMine - An integrated database for Drosophila genomics

FBgn0019936

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG15693

MARRVEL_MODEL - MARRVEL (model organism gene)

42464

PDB - An information portal to biological macromolecular structures

Linkouts

BioGRID - A database of protein and genetic interactions.

67437

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0019936

DroID - A comprehensive database of gene and protein interactions.

FBgn0019936

DRSC - Results frm RNAi screens

FBgn0019936

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

RpS20_1

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0019936

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0019936

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG15693

Flygut - An atlas of the Drosophila adult midgut

FBgn0019936

FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.

FBgn0019936

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

TC008667

KEGG Pathways - A collection of manually drawn pathway maps representing knowledge of molecular interaction, reaction and relation networks.

Ribosome

MIST (protein-protein) - An integrated Molecular Interaction Database

42464

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

References (77)

The following external sites may use different assemblies or annotations than FlyBase.

-0.94

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