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Gene Dmel\ATPsyn-γ

General Information
Symbol	Dmel\ATPsyn-γ	Species	D. melanogaster
Name	ATP synthase-γ chain	Annotation symbol	CG7610
Feature type	protein_coding_gene	FlyBase ID	FBgn0020235
Gene Model Status	Current	Stock availability	4 publicly available
Also Known As	ATPsyn-gamma
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	99B10-99B10	Sequence location	3R:25,573,426..25,574,858 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene ATP synthase-γ chain is referred to in FlyBase by the symbol Dmel\ATPsyn-γ (CG7610, FBgn0020235). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: hydrogen-exporting ATPase activity, phosphorylative mechanism. There is experimental evidence that it is involved in the biological process: phagocytosis, engulfment. 3 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: ATPase, F1 complex, gamma subunit; ATPase, F1 complex, gamma subunit conserved site; ATPase, F1 complex, gamma subunit domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during late pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult testis. Gene sequence location is 3R:25573426..25574858.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN40252 HFA14094
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 99B10-99B10   Limits computationally determined from genome sequence between P{PZ}l(3)0674306743 and P{PZ}ncd05884
Experimentally Determined Cytological Location
Cytogenetic map Notes References 99B-99B     (Caggese, 1997.4.21) 99B6-99B10   (determined by in situ hybridisation)   (Caggese et al., 1999)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\ATPsyn-γ for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) ATPsyn-γ-RA FBtr0085539  NM_079826   1065   297 ATPsyn-γ-RB FBtr0085540  NM_170425   1368   297 ATPsyn-γ-RC FBtr0085541  NM_170426   1139   297
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein ATPsyn-γ-PA   FBpp0084905   32.9   297   9.67     NP_524550   AAN14185 ATPsyn-γ-PB   FBpp0084906   32.9   297   9.67     NP_733304   AAF56932 ATPsyn-γ-PC   FBpp0084907   32.9   297   9.67     NP_733305   AAN14186
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • ATPase, F1 complex, gamma subunit (IPR000131) ATPase, F1 complex, gamma subunit conserved site (IPR023632) ATPase, F1 complex, gamma subunit domain (IPR023633) MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins • MTDROME07610
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201114   AA695326   AA695894   AA695905   AA696964   AA698154   AA699012   AA735331   AA735752   AA736209   AA803146   AA816976   AA820070   AA942104   AA950689   AE014297 AAF56932   AE014297 AAN14185   AE014297 AAN14186   AI061841   AI061983   AI062128   AI062191   AI062338   AI062650   AI062682   AI063186   AI064210   AI106691   AI107187   AI107194   AI107876   AI109317   AI110005   AI134029   AI135144   AI135777   AI257729   AI260131   AI260941   AI293976   AI387771   AI389392   AI390002   AI513677   AI517671   AI543957   AY113454 AAM29459   AY231923   AY232090   AY431967   AY432577   BF489906   BF493964   BF504273   BG636270   BG636356   BG636517   BG636560   BG636576   BG636878   BG637039   BG637148   BG637308   BG637497   BG639606   BG641138   BG641338   BI141869   BI142048   BI142115   BI169054   BI213912   BI216137   BI229003   BI238979   BI239268   BI240747   BI352094   BI353730   BI355001   BI355085   BI355560   BI364101   BI374002   BI483237   BI563590   BI568723   BI569652   BI570337   BI570405   BI570489   BI574325   BI574908   BI578774   BI580019   BI580373   BI582764   BI582939   BI583087   BI583935   BI584207   BI584273   BI584502   BI588901   BI590482   BI590502   BI593380   BI606404   BI608164   BI610683   BI610961   BI611207   BI612119   BI612643   BI613369   BI614599   BI615677   BI617505   BI618506   BI621916   BI624736   BI625804   BI627098   BI632145   BI633263   BI633637   BI633926   BI633928   BI633969   BI634431   BI635490   BI635925   BI636005   BI636364   BI636522   BI636748   BI637513   BI637674   BI638458   BI638536   BI638537   BI638633   BI639009   BI639330   BI639335   BI639706   BI639752   BI639815   BI640099   BI640148   BI640662   BI640815   BI640891   BI640938   BI640942   BI640958   BI641141   BI641494   BI641838   BP549114   BP550696   BP550697   BP550854   BP550855   BP550882   BP550883   BP550902   BP550987   BP550988   BP551008   BP551009   BP551132   BP551133   BP552086   BP552087   BP552273   BP552274   BP555569   BP555570   BQ103443   BX010119   BX010213   BX013647   BX019411   BX021965   BX022121   BX025470   BX026169   BX031062   BX037380   BX037415   BX039459   BX043261   BX045641   BX046185   BX047210   BX048129   BX048826   BX048965   BX049488   BX052771   BX054695   BX057599   BX058225   BX060235   BX062399   BX062671   BX064037   BX065628   BX065648   BX065766   BX066396   BX067837   CA807612   CK658683   CK662146   CO153158   CO153712   CO154572   CO156156   CO156451   CO156499   CO156918   CO177400   CO179482   CO192741   CO194447   CO269539   CO281155   CO284570   CO310359   CO310980   CO311524   CO313007   CO315889   CO322220   CO330297   CO330615   CO336068   CO336450   CO336760   CO337102   CO337256   CO337550   CO337777   CO338210   CO342109   EC064939   EC074522   EC076037   EC081048   EC199167   EC202582   EC215251   EC215748   EC216778   EC227882   EC228584   EC228585   EC228586   EC231718   EC241861   EC250830   EC254786   EC261571   EC262522   EC263213   EC263300   EC264331   EC265080   EC266651   EC266951   EC266978   EC267670   EL873944   EL873945   EL876402   EL876403   EL881567   EL883753   EV575130   EV585724   EV587408   EV589249   EV589463   EV590278   EV590482   EV591195   EV593200   EV594614   EV594984   EV596929   GH816592   GH927206   Y12701 CAA73233
UniProtKB/Swiss-Prot	O01666
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Dorus et al., 2006, Wasbrough et al., 2010) day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0020235    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0020235 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, during late pupal stages, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0020235 expression level Developmental Stage   Expression Level embryo 00-02hr    16873 embryo 02-04hr    11019 embryo 04-06hr    5684 embryo 06-08hr    6991 embryo 08-10hr    9215 embryo 10-12hr    17006 embryo 12-14hr    12708 embryo 14-16hr    24753 embryo 16-18hr    24153 embryo 18-20hr    30691 embryo 20-22hr    37374 embryo 22-24hr    32858 larva L1    51647 larva L2    51625 larva L3 12hr old    48415 larva L3 puffstage 1-2    24147 larva L3 puffstage 3-6    12849 larva L3 puffstage 7-9    9802 white prepupae new    9468 white prepupae 12hr    8136 white prepupae 24hr    8720 pupae 2d postWPP    16986 pupae 3d postWPP    49312 pupae 4d postWPP    83428 adult male 01day    67647 adult male 05day    43229 adult male 30day    19372 adult female 01day    68175 adult female 05day    23706 adult female 30day    18920 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (16873) embryo 02-04hr  (11019) embryo 04-06hr  (5684) embryo 06-08hr  (6991) embryo 08-10hr  (9215) embryo 10-12hr  (17006) embryo 12-14hr  (12708) embryo 14-16hr  (24753) embryo 16-18hr  (24153) embryo 18-20hr  (30691) embryo 20-22hr  (37374) embryo 22-24hr  (32858) larva L1  (51647) larva L2  (51625) larva L3 12hr old  (48415) larva L3 puffstage 1-2  (24147) larva L3 puffstage 3-6  (12849) larva L3 puffstage 7-9  (9802) white prepupae new  (9468) white prepupae 12hr  (8136) white prepupae 24hr  (8720) pupae 2d postWPP  (16986) pupae 3d postWPP  (49312) pupae 4d postWPP  (83428) adult male 01day  (67647) adult male 05day  (43229) adult male 30day  (19372) adult female 01day  (68175) adult female 05day  (23706) adult female 30day  (18920) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (16873) embryo 02-04hr  (11019) embryo 04-06hr  (5684) embryo 06-08hr  (6991) embryo 08-10hr  (9215) embryo 10-12hr  (17006) embryo 12-14hr  (12708) embryo 14-16hr  (24753) embryo 16-18hr  (24153) embryo 18-20hr  (30691) embryo 20-22hr  (37374) embryo 22-24hr  (32858) larva L1  (51647) larva L2  (51625) larva L3 12hr old  (48415) larva L3 puffstage 1-2  (24147) larva L3 puffstage 3-6  (12849) larva L3 puffstage 7-9  (9802) white prepupae new  (9468) white prepupae 12hr  (8136) white prepupae 24hr  (8720) pupae 2d postWPP  (16986) pupae 3d postWPP  (49312) pupae 4d postWPP  (83428) adult male 01day  (67647) adult male 05day  (43229) adult male 30day  (19372) adult female 01day  (68175) adult female 05day  (23706) adult female 30day  (18920) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (16873) embryo 02-04hr  (11019) embryo 04-06hr    5684 embryo 06-08hr    6991 embryo 08-10hr    9215 embryo 10-12hr  (17006) embryo 12-14hr  (12708) embryo 14-16hr  (24753) embryo 16-18hr  (24153) embryo 18-20hr  (30691) embryo 20-22hr  (37374) embryo 22-24hr  (32858) larva L1  (51647) larva L2  (51625) larva L3 12hr old  (48415) larva L3 puffstage 1-2  (24147) larva L3 puffstage 3-6  (12849) larva L3 puffstage 7-9    9802 white prepupae new    9468 white prepupae 12hr    8136 white prepupae 24hr    8720 pupae 2d postWPP  (16986) pupae 3d postWPP  (49312) pupae 4d postWPP  (83428) adult male 01day  (67647) adult male 05day  (43229) adult male 30day  (19372) adult female 01day  (68175) adult female 05day  (23706) adult female 30day  (18920) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    16873 embryo 02-04hr    11019 embryo 04-06hr    5684 embryo 06-08hr    6991 embryo 08-10hr    9215 embryo 10-12hr    17006 embryo 12-14hr    12708 embryo 14-16hr    24753 embryo 16-18hr    24153 embryo 18-20hr    30691 embryo 20-22hr    37374 embryo 22-24hr    32858 larva L1    51647 larva L2    51625 larva L3 12hr old    48415 larva L3 puffstage 1-2    24147 larva L3 puffstage 3-6    12849 larva L3 puffstage 7-9    9802 white prepupae new    9468 white prepupae 12hr    8136 white prepupae 24hr    8720 pupae 2d postWPP    16986 pupae 3d postWPP    49312 pupae 4d postWPP    83428 adult male 01day    67647 adult male 05day    43229 adult male 30day    19372 adult female 01day    68175 adult female 05day    23706 adult female 30day    18920 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0020235 expression level Developmental Stage   Expression Level embryo 00-02hr    16873 embryo 02-04hr    11019 embryo 04-06hr    5684 embryo 06-08hr    6991 embryo 08-10hr    9215 embryo 10-12hr    17006 embryo 12-14hr    12708 embryo 14-16hr    24753 embryo 16-18hr    24153 embryo 18-20hr    30691 embryo 20-22hr    37374 embryo 22-24hr    32858 larva L1    51647 larva L2    51625 larva L3 12hr old    48415 larva L3 puffstage 1-2    24147 larva L3 puffstage 3-6    12849 larva L3 puffstage 7-9    9802 white prepupae new    9468 white prepupae 12hr    8136 white prepupae 24hr    8720 pupae 2d postWPP    16986 pupae 3d postWPP    49312 pupae 4d postWPP    83428 adult male 01day    67647 adult male 05day    43229 adult male 30day    19372 adult female 01day    68175 adult female 05day    23706 adult female 30day    18920 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (16873) embryo 02-04hr  (11019) embryo 04-06hr  (5684) embryo 06-08hr  (6991) embryo 08-10hr  (9215) embryo 10-12hr  (17006) embryo 12-14hr  (12708) embryo 14-16hr  (24753) embryo 16-18hr  (24153) embryo 18-20hr  (30691) embryo 20-22hr  (37374) embryo 22-24hr  (32858) larva L1  (51647) larva L2  (51625) larva L3 12hr old  (48415) larva L3 puffstage 1-2  (24147) larva L3 puffstage 3-6  (12849) larva L3 puffstage 7-9  (9802) white prepupae new  (9468) white prepupae 12hr  (8136) white prepupae 24hr  (8720) pupae 2d postWPP  (16986) pupae 3d postWPP  (49312) pupae 4d postWPP  (83428) adult male 01day  (67647) adult male 05day  (43229) adult male 30day  (19372) adult female 01day  (68175) adult female 05day  (23706) adult female 30day  (18920) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (16873) embryo 02-04hr  (11019) embryo 04-06hr  (5684) embryo 06-08hr  (6991) embryo 08-10hr  (9215) embryo 10-12hr  (17006) embryo 12-14hr  (12708) embryo 14-16hr  (24753) embryo 16-18hr  (24153) embryo 18-20hr  (30691) embryo 20-22hr  (37374) embryo 22-24hr  (32858) larva L1  (51647) larva L2  (51625) larva L3 12hr old  (48415) larva L3 puffstage 1-2  (24147) larva L3 puffstage 3-6  (12849) larva L3 puffstage 7-9  (9802) white prepupae new  (9468) white prepupae 12hr  (8136) white prepupae 24hr  (8720) pupae 2d postWPP  (16986) pupae 3d postWPP  (49312) pupae 4d postWPP  (83428) adult male 01day  (67647) adult male 05day  (43229) adult male 30day  (19372) adult female 01day  (68175) adult female 05day  (23706) adult female 30day  (18920) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  16873 embryo 02-04hr  11019 embryo 04-06hr    5684 embryo 06-08hr    6991 embryo 08-10hr    9215 embryo 10-12hr  17006 embryo 12-14hr  12708 embryo 14-16hr  (24753) embryo 16-18hr  (24153) embryo 18-20hr  (30691) embryo 20-22hr  (37374) embryo 22-24hr  (32858) larva L1  (51647) larva L2  (51625) larva L3 12hr old  (48415) larva L3 puffstage 1-2  (24147) larva L3 puffstage 3-6  12849 larva L3 puffstage 7-9    9802 white prepupae new    9468 white prepupae 12hr    8136 white prepupae 24hr    8720 pupae 2d postWPP  16986 pupae 3d postWPP  (49312) pupae 4d postWPP  (83428) adult male 01day  (67647) adult male 05day  (43229) adult male 30day  19372 adult female 01day  (68175) adult female 05day  (23706) adult female 30day  18920 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    16873 embryo 02-04hr    11019 embryo 04-06hr    5684 embryo 06-08hr    6991 embryo 08-10hr    9215 embryo 10-12hr    17006 embryo 12-14hr    12708 embryo 14-16hr    24753 embryo 16-18hr    24153 embryo 18-20hr    30691 embryo 20-22hr    37374 embryo 22-24hr    32858 larva L1    51647 larva L2    51625 larva L3 12hr old    48415 larva L3 puffstage 1-2    24147 larva L3 puffstage 3-6    12849 larva L3 puffstage 7-9    9802 white prepupae new    9468 white prepupae 12hr    8136 white prepupae 24hr    8720 pupae 2d postWPP    16986 pupae 3d postWPP    49312 pupae 4d postWPP    83428 adult male 01day    67647 adult male 05day    43229 adult male 30day    19372 adult female 01day    68175 adult female 05day    23706 adult female 30day    18920 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0020235    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0020235 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Heatmap Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut no informative data Larval Hindgut no informative data Larval Malpighian Tubules no informative data Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea no informative data Larval Carcass no informative data Adult Head no informative data Adult Eye no informative data Adult Brain no informative data Adult Thoracic-Abdominal Ganglion no informative data Adult Crop no informative data Adult Midgut no informative data Adult Hindgut no informative data Adult Malpighian Tubules no informative data Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary no informative data Adult Testis no informative data Adult Male Accessory Gland no informative data Adult Carcass no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_15
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0020235 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7610-RA;CG7610-RC FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for ATPsyn-γ Stages(s) 4-6 Stages(s) 7-8 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele semi-lethal | pupal stage, with Scer\GAL4pnr-MD237 ATPsyn-γGD6339 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 ATPsyn-γGD6339 Phenotype manifest in Allele mesothoracic tergum, with Scer\GAL4pnr-MD237 ATPsyn-γGD6339
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of ATPsyn-γ Class Mutagen Stocks Known lesion ATPsyn-γEY03351 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of ATPsyn-γ Class Mutagen Stocks Known lesion ATPsyn-γGD6339 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes ATPsyn-γJF03150 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel9025 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}ATPsyn-γEY03351 NA
Gene Ontology: Function, Process & Cellular Component ( 8 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
phagocytosis, engulfment inferred from mutant phenotype (Stroschein-Stevenson et al., 2006)
Cellular Component
CV term Evidence References
lipid particle inferred from direct assay (Beller et al., 2006, Cermelli et al., 2006)
Terms Based on Predictions or Assertions ( 6 terms )
Molecular Function
CV term Evidence References
hydrogen-exporting ATPase activity, phosphorylative mechanism inferred from sequence or structural similarity with UniProtKB:P05631 (FlyBase, 1992-) inferred from sequence or structural similarity with UniProtKB:P36542 (Sardiello et al., 2003.6.11) non-traceable author statement (Caggese, 1997.4.21, Swiss-Prot Project Members, 1999.12.15) hydrogen ion transporting ATP synthase activity, rotational mechanism inferred from electronic annotation with InterPro:IPR000131 (FlyBase Curators et al., 2004-) proton-transporting ATPase activity, rotational mechanism inferred from electronic annotation with InterPro:IPR000131 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
ATP synthesis coupled proton transport inferred from electronic annotation with InterPro:IPR000131 (FlyBase Curators et al., 2004-) proton transport inferred from sequence or structural similarity with UniProtKB:P36542 (Sardiello et al., 2003.6.11)
Cellular Component
CV term Evidence References
mitochondrial proton-transporting ATP synthase complex, catalytic core F(1) inferred from sequence or structural similarity with UniProtKB:P36542 (Sardiello et al., 2003.6.11)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions ATPsyn-γ allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 68371 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0020235 DroID - A comprehensive database of gene and protein interactions. • FBgn0020235 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43507
Orthologs
Genome-wide drosophilid orthologs	Dana\GF22866 Dere\GG12004 Dgri\GH13985 Dmoj\GI22330 Dper\GL23812 Dpse\GA20479 Dsec\GM12224 Dsim\GD17673 Dvir\GJ10518 Dwil\GK11166 Dyak\ATPsyn-γ
Curated drosophilid orthologs	Dpse\GA20479 (Tripoli et al., 2005) Dyak\ATPsyn-γ
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL008848-PA Aedes aegypti (mosquito) AGAP007966-PA Anopheles gambiae (mosquito) XP_625078.1 Apis mellifera (honey bee) NP_001119637.1 Acyrthosiphon pisum (pea aphid) At2g33040.1 Arabidopsis thaliana (wall cress) 91114 Batrachochytrium dendrobatidis (chytrid fungus) 130264 Branchiostoma floridae (lancelet) 276317 Branchiostoma floridae (lancelet) XP_001894132.1 Brugia malayi (roundworm nematode) BGIBMGA013965-PA Bombyx mori (silk worm) ENSBTAP00000018505 Bos taurus (bovine) CAL0003252 Candida albicans (a form of yeast) CN23065 Caenorhabditis brenneri (small nematode) CBP12184 Caenorhabditis briggsae (nematode) CE29133 Caenorhabditis elegans (worm) ENSCAFP00000007480 Canis familiaris (dog) CAGL0I04686g Candida glabrata (haploid yeast) ENSCINP00000025174 Ciona intestinalis (sea squirt) JA05475 Caenorhabditis japonica (nematode) CML029C Cyanidioschyzon merolae (red alga) cn05070 Cryptococcus neoformans (yeast-like fungus) CPIJ001563 Culex pipens (mosquito) ENSCPOP00000009450 Cavia porcellus (guinea pig) 194183 Chlamidomonas reinhardtii (green alga) RP16058 Caenorhabditis remanei (nematode) ENSCSAVP00000015990 Ciona savignyi (sedentary tunicate) 173744 Capitella spl (polychaete worm) DDB0237782 Dictyostelium discoideum (amoeba) DEHA2F20658g Debaryomyces Hansenii (yeast) 226547 Daphnia pulex (daphnia) ENSDARP00000066929 Danio rerio (zebra fish) ENSECAP00000022251 Equus caballus (horse) NP_418189.1 Escherichia coli K12 (bacteria) ENSGACP00000026566 Gymnopilus aculeatus (mushroom) ENSGALP00000010899 Gallus gallus (chicken) 73507 Hypsipyla robusta (cedar shoot borer) ENSP00000380295 Homo sapiens (human) ISCW023477-PA Ixodes scapularis (deer tick) KLLA0B06886g Kluyveromyces lactis (yeast) 235900 Lottia gigantea (owl limpet) LmjF21.1770 Leishmania major (virus) 28131 Monocosta brevicollis (choanoflagellate) ENSMODP00000020878 Monodelphis domestica (gray opossum) ENSMMUP00000012071 Macaca mulatta (rhesus monkey) ENSMUSP00000110547 Mus musculus (house mouse) 239595 Nematostella vectensis (starlet anemone) XP_001600299.1 Nasonia vitripennis (wasp) ENSOANP00000024299 Ornithorynchus anatinus (platypus) ENSORLP00000021439 Oryzias latipes (japanese killifish) LOC_Os10g17280.1 Oryza sativa (asian rice) 27351 Ostreococcus tauri (green alga) PF13_0061 Plasmodium falciparum (protozoal parasite) PHUM002629-PA Pediculus humanus (human body louse) PP06925 Pristionchus pacificus (nematode) 117130 Physcomitrella patens (moss) 148150 Physcomitrella patens (moss) 153003 Physcomitrella patens (moss) ENSPPYP00000002405 Pongo pygmaeus (orangutan) 71341 Phytophthora ramorum (sudden oak death pathogen) 109105 Phytophthora sojae (root rot pathogen) 834294 Populus trichocarpa (black cottonwood) ENSPTRP00000044643 Pan troglodytes (chimpanzee) PVX_122395 Plasmodium vivax (protozoal parasite) 147522 Sorghum bicolor (sorghum) YBR039W Saccharomyces cerevisiae (budding yeast) Smp_033670.5 Schistosoma mansoni (trematode parasite) SPBC1734.13 Schizosaccharomyces pombe (fission yeast) XP_784312.1 Strongylocentrotus purpuratus (purple sea urchin) 63188 Trichoplax adhaerens (metazoa) TA19395 Theileria annulata (apicomplexan parasite) XP_972721.1 Tribolium castaneum (red flour beetle) Tc00.1047053504069.80 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053511145.60 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000015610 Tetraodon nigroviridis (green spotted pufferfish) TP01_0201 Theileria parva (parasitic protozoan) 5026 Thalassiosira pseudonana (marine diatom) ENSTRUP00000026722 Takifugu rubripes (pufferfish Takifugu) 3812.m02472 Tetrahymena thermophila (ciliate protozoa) ENSXETP00000003951 Xenopus tropicalis (frog) YALI0F02893g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB17562 NV16081 LH17625 ISCW023477 FBgn0068542 FBgn0213177 FBgn0197798 FBgn0189222 FBgn0167161 JGI_V11_226547 FBgn0080474 FBgn0161402 FBgn0145058 FBgn0121461 FBgn0104296 FBgn0099860 CPIJ001563 BGIBMGA013965 ACYPI000053 GB15291 AGAP007966 AAEL008848 PHUM167420 GLEAN_09010
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	28723 y1 v1; P{TRiP.JF03150}attP2/TM3, Sb1 15641 y1 w67c23; P{EPgy2}ATPsyn-γEY03351/TM3, Sb1 Ser1
VDRC	v16538 w1118; P{GD6339}v16538 v16539 w1118; P{GD6339}v16539
Genomic Clones ( 1 )
	BACR02O03 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 243 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE35715
Other clones	DPiM_RE35715 yak-ad_ATPsyn yak-em_ATPsyn
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT02359 AT05596 AT26092 GH01008 GH01213 GH01315 GH01509 GH01935 GH01972 GH02711 GH02965 GH04504 GH05752 GH06508 GH06519 GH06768 GH08466 GH09428 GH11365 GH12785 GH13649 GH18424 GH20548 GH21442 GH26729 GH28718 GM02611 GM04729 GM04750 GM08810 GM10309 GM17607 GM24887 GM29173 GM29432 GM31333 HL03855 HL07303 HL08171 LD01855 LD04174 LD21121 LD21921 LD26143 LD30658 LD45658 LP03822 LP04983 LP06183 LP07251 LP15823 LP22148 RE10027 RE19556 RE23063 RE26690 RE35356 RE37662 RE49146 RE61492 RE66105 RE72691 RE74140 RE74557 RH01771 RH02645 RH02726 RH02832 RH04109 RH04133 RH11408 RH12342 RH16255 RH17005 RH17374 RH21066 RH21363 RH21535 RH22659 RH23093 RH23203 RH23340 RH23726 RH27457 RH30357 RH34253 RH38484 RH40406 RH40521 RH41578 RH42513 RH44012 RH45384 RH47866 RH49357 RH53703 RH64364 RH66304 RH68307 RH72845 SD03227 SD12395 SD12659 SD13904 SD14014 SD14248 SD14301 SD14320 SD14692 SD14885 SD15018 SD15235 SD15521 SD15831 SD16043 SD16121 SD16858 SD17463 SD17561 SD18017 SD18227 SD18561 SD19552 SD19733 SD20751 SD20842 SD20843 SD20976 SD21438 SD21888 SD21894 SD22361 SD22419 SD22505 SD22885 SD22946 SD23623 SD23818 SD23916 SD23974 SD23979 SD24004 SD24347 SD24845 SD25476 SD25755 SD27308 SD27775 SD28128 SD28131 SD28190
Other clones	37927 62478 98415 103250 105814 160090 174008 192199 192959 214373.25 282448 527199 533463 556956 557870 558199 562163 568904 569225 569626 571155 CK01.65C.D6 CK01.76B.E9 CK01.113A.B8 CK01.124D.G2 Dmel_dig_011114_0674_2569 Dmel_dig_016176_0674_2853 Dmel_neb_006809_0609_0650 Dmel_neb_008061_0701_0985 Dmel_neb_009152_0085_3293 Dmel_neb_010299_0882_2927 Dmel_neb_010972_0350_2786 Dmel_neb_012135_0421_3228 Dmel_neb_012610_0606_2249 Dmel_neb_013583_0325_2158 Dmel_neb_014333_0351_0749 Dmel_neb_015512_0383_1524 EC34387 EC38581 EK053347 EK059519 EK094857 EK156062 EK166323 EK187563 EK221326 EK223107 EK225033 EK230927 EK262935 EK294922 EK295732 EN01406 EN02638 EN04404 EN07444 EN08104 EN08205 EN09552 EN11746 EN12549 EN13162 EN13834 EN14145 EN14761 EN15260 EN16215 EP13848 ESG018c.E21.1_H06 FGM003G03 FGM208F02 FGM209E11 FGM209G02 FGM209H03 FGM210C11 FGM210D10 FGM211B03 FGM216F11 FGM217G11 FGM236A02 GM09736 IP06325 IP11356 IP13409 IP14029 RP003182017 RP003410723 UUGC0848
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0020235 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43507
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	S2 cells treated with dsRNA generated against this gene show reduced phagocytosis of Candida albicans compared to untreated cells. (Stroschein-Stevenson et al., 2006) RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_079826 NM_170425 NM_170426 RefSeq (Proteins) • NP_524550 NP_733304 NP_733305 DDBJ / EMBL / GenBank • AAF56932 AAM29459 AAN14185 AAN14186 AY113454 BI239268 CAA73233 Y12701 Entrez Gene - A searchable database of RefSeq genes. • 43507 UniProtKB/Swiss-Prot • O01666
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • ATPase, F1 complex, gamma subunit (IPR000131) ATPase, F1 complex, gamma subunit conserved site (IPR023632) ATPase, F1 complex, gamma subunit domain (IPR023633) MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins • MTDROME07610
Linkouts
	BioGRID - A database of protein and genetic interactions • 68371 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0020235 DroID - A comprehensive database of gene and protein interactions. • FBgn0020235 DRSC - Results from RNAi screens. • FBgn0020235 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0020235 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7610-RA;CG7610-RC FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0020235 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43507 InParanoid A subset of ortholog calls from InParanoid. • AAEL008848-PA Aedes aegypti (mosquito) AGAP007966-PA Anopheles gambiae (mosquito) XP_625078.1 Apis mellifera (honey bee) NP_001119637.1 Acyrthosiphon pisum (pea aphid) At2g33040.1 Arabidopsis thaliana (wall cress) 91114 Batrachochytrium dendrobatidis (chytrid fungus) 130264 Branchiostoma floridae (lancelet) 276317 Branchiostoma floridae (lancelet) XP_001894132.1 Brugia malayi (roundworm nematode) BGIBMGA013965-PA Bombyx mori (silk worm) ENSBTAP00000018505 Bos taurus (bovine) CAL0003252 Candida albicans (a form of yeast) CN23065 Caenorhabditis brenneri (small nematode) CBP12184 Caenorhabditis briggsae (nematode) CE29133 Caenorhabditis elegans (worm) ENSCAFP00000007480 Canis familiaris (dog) CAGL0I04686g Candida glabrata (haploid yeast) ENSCINP00000025174 Ciona intestinalis (sea squirt) JA05475 Caenorhabditis japonica (nematode) CML029C Cyanidioschyzon merolae (red alga) cn05070 Cryptococcus neoformans (yeast-like fungus) CPIJ001563 Culex pipens (mosquito) ENSCPOP00000009450 Cavia porcellus (guinea pig) 194183 Chlamidomonas reinhardtii (green alga) RP16058 Caenorhabditis remanei (nematode) ENSCSAVP00000015990 Ciona savignyi (sedentary tunicate) 173744 Capitella spl (polychaete worm) DDB0237782 Dictyostelium discoideum (amoeba) DEHA2F20658g Debaryomyces Hansenii (yeast) 226547 Daphnia pulex (daphnia) ENSDARP00000066929 Danio rerio (zebra fish) ENSECAP00000022251 Equus caballus (horse) NP_418189.1 Escherichia coli K12 (bacteria) ENSGACP00000026566 Gymnopilus aculeatus (mushroom) ENSGALP00000010899 Gallus gallus (chicken) 73507 Hypsipyla robusta (cedar shoot borer) ENSP00000380295 Homo sapiens (human) ISCW023477-PA Ixodes scapularis (deer tick) KLLA0B06886g Kluyveromyces lactis (yeast) 235900 Lottia gigantea (owl limpet) LmjF21.1770 Leishmania major (virus) 28131 Monocosta brevicollis (choanoflagellate) ENSMODP00000020878 Monodelphis domestica (gray opossum) ENSMMUP00000012071 Macaca mulatta (rhesus monkey) ENSMUSP00000110547 Mus musculus (house mouse) 239595 Nematostella vectensis (starlet anemone) XP_001600299.1 Nasonia vitripennis (wasp) ENSOANP00000024299 Ornithorynchus anatinus (platypus) ENSORLP00000021439 Oryzias latipes (japanese killifish) LOC_Os10g17280.1 Oryza sativa (asian rice) 27351 Ostreococcus tauri (green alga) PF13_0061 Plasmodium falciparum (protozoal parasite) PHUM002629-PA Pediculus humanus (human body louse) PP06925 Pristionchus pacificus (nematode) 117130 Physcomitrella patens (moss) 148150 Physcomitrella patens (moss) 153003 Physcomitrella patens (moss) ENSPPYP00000002405 Pongo pygmaeus (orangutan) 71341 Phytophthora ramorum (sudden oak death pathogen) 109105 Phytophthora sojae (root rot pathogen) 834294 Populus trichocarpa (black cottonwood) ENSPTRP00000044643 Pan troglodytes (chimpanzee) PVX_122395 Plasmodium vivax (protozoal parasite) 147522 Sorghum bicolor (sorghum) YBR039W Saccharomyces cerevisiae (budding yeast) Smp_033670.5 Schistosoma mansoni (trematode parasite) SPBC1734.13 Schizosaccharomyces pombe (fission yeast) XP_784312.1 Strongylocentrotus purpuratus (purple sea urchin) 63188 Trichoplax adhaerens (metazoa) TA19395 Theileria annulata (apicomplexan parasite) XP_972721.1 Tribolium castaneum (red flour beetle) Tc00.1047053504069.80 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053511145.60 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000015610 Tetraodon nigroviridis (green spotted pufferfish) TP01_0201 Theileria parva (parasitic protozoan) 5026 Thalassiosira pseudonana (marine diatom) ENSTRUP00000026722 Takifugu rubripes (pufferfish Takifugu) 3812.m02472 Tetrahymena thermophila (ciliate protozoa) ENSXETP00000003951 Xenopus tropicalis (frog) YALI0F02893g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43507 modMine - Data generated by the modENCODE project. • FBgn0020235 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB17562 NV16081 LH17625 ISCW023477 FBgn0068542 FBgn0213177 FBgn0197798 FBgn0189222 FBgn0167161 JGI_V11_226547 FBgn0080474 FBgn0161402 FBgn0145058 FBgn0121461 FBgn0104296 FBgn0099860 CPIJ001563 BGIBMGA013965 ACYPI000053 GB15291 AGAP007966 AAEL008848 PHUM167420 GLEAN_09010
Synonyms & Secondary IDs ( 13 )
Reported As
Symbol Synonym	ATPG_DROME (Storm and Sonnhammer, 2003) ATPsyn-gam (Dorus et al., 2006) ATPsyn-gamma (Giot et al., 2003, Beller et al., 2006, Porcelli et al., 2007, Tripoli et al., 2005, Wasbrough et al., 2010) ATPsyn-γ (Stroschein-Stevenson et al., 2006, Stuart et al., 2007) CG7610 (Cermelli et al., 2006, Porcelli et al., 2007, Perkins et al., 2009, Cammarato et al., 2011)
Name Synonym	ATPsyn-gamma chain (Cermelli et al., 2006) ATP synthase Gamma chain (Tripoli et al., 2005) ATP synthase-gamma chain (Cammarato et al., 2011) ATP synthase subunit gamma (Caggese, 1997.4.21) ATP synthase-γ chain   catalytic core of F1 ATP synthase of complex V (Chang et al., 2011) F0/F1 ATP synthase Gamma (Porcelli et al., 2007) F1ATP synthase (Gandhi et al., 2004)
Secondary FlyBase IDs
References ( 32 )
Generate a list of	All references relating to this gene ( 32 )
List References by type	Research paper  ( 11 ) Supplementary material  ( 9 ) Personal communication to FlyBase  ( 5 ) FlyBase analysis  ( 1 ) DNA/RNA sequence record  ( 1 ) Protein sequence record  ( 1 ) Computer file  ( 2 ) Curated genome annotation  ( 1 ) Automatic genome annotation  ( 1 )
Recent research papers ( 2 )
	Chang et al., 2011, PLoS Genet. 7(2): e1001288 Pathogenic VCP/TER94 Alleles Are Dominant Actives and Contribute to Neurodegeneration by Altering Cellular ATP Level in a Drosophila IBMPFD Model. [FBrf0213008] Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812] Show all research papers ...