A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\stet

General Information
SymbolDmel\stetSpeciesD. melanogaster
Namestem cell tumorAnnotation symbolCG33166
Feature typeprotein_coding_geneFlyBase IDFBgn0020248
Gene Model StatusCurrent Stock availability 11 publicly available
Also Known AsRho-2, Brho, Rho2
Genomic Location
Chromosome (arm)3LRecombination map
Cytogenetic map62A2-62A2Sequence location3L:1,475,429..1,489,547 [-]

Genomic Maps

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modENCODE GBrowse
detailed view
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Automatically generated summary

See sections below for more information
The gene stem cell tumor is referred to in FlyBase by the symbol Dmel\stet (CG33166, FBgn0020248). It is a protein_coding_gene from Drosophila melanogaster. It is reported to have molecular function: serine-type peptidase activity. It is reported to be involved in the biological process: epidermal growth factor receptor signaling pathway. 35 alleles are reported. The phenotypes of these alleles are annotated with: organ system; multicellular structure; anatomical structure; portion of tissue; ovariole; multi-tissue structure; cell part; acellular anatomical structure; adult segment; cell periphery; organ system subdivision; gonadal sheath. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: EF-HAND 2; EF-hand-like domain; Peptidase S54, rhomboid; Peptidase S54, rhomboid domain; Peptidase S54, rhomboid, metazoan. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1641652_a_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of stet. Gene sequence location is 3L:1475429..1489547.

External Summaries
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2012_01
References
Sequence features
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
62A2-62A2  
Limits computationally determined from genome sequence between P{EP}rhoEP3704&P{PZ}l(3)0622606226 and P{PZ}dlt04276  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
62A1-62A1  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\stet for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0310161 FBtr0072695 FBtr0072713 FBtr0321280 FBtr0091635 FBtr0072712 FBtr0072711 FBpp0072597 FBpp0072579 FBpp0072596 FBti0050749 FBti0023604 FBti0111301 FBti0106347 FBti0103043 FBti0113373 FBti0068214 FBti0025299 FBti0110919 FBti0052636 FBti0054153 FBti0030095 FBti0038743 FBti0033384 FBti0125473_2 FBti0125473_1 FBti0069209 FBti0055695 FBti0009884 FBti0047893 FBti0052699 FBti0105535 FBti0039332
Comments on Gene Model
Added CG12083 as synonym, made it a temp to get a new CG
Gene merge/split based on EST data.
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0072713
  1897
  330
FBtr0072712
  2370
  485
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0072597  
37.1  
330  
6.99  
FBpp0072596  
54.5  
485  
5.96  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view Ptp61F-RE robl62A-RA stet-RA CR43701-RB snoRNA:Psi28S-2622-RA stet-RB
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0020248


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0020248
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0020248 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 2583
embryo 02-04hr
 
 103
embryo 04-06hr
 
 54
embryo 06-08hr
 
 44
embryo 08-10hr
 
 94
embryo 10-12hr
 
 359
embryo 12-14hr
 
 397
embryo 14-16hr
 
 359
embryo 16-18hr
 
 158
embryo 18-20hr
 
 73
embryo 20-22hr
 
 52
embryo 22-24hr
 
 50
larva L1
 
 51
larva L2
 
 30
larva L3 12hr old
 
 9
larva L3 puffstage 1-2
 
 16
larva L3 puffstage 3-6
 
 47
larva L3 puffstage 7-9
 
 89
white prepupae new
 
 110
white prepupae 12hr
 
 152
white prepupae 24hr
 
 190
pupae 2d postWPP
 
 128
pupae 3d postWPP
 
 38
pupae 4d postWPP
 
 134
adult male 01day
 
 46
adult male 05day
 
 67
adult male 30day
 
 71
adult female 01day
 
 1672
adult female 05day
 
 2765
adult female 30day
 
 2703
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2583)
embryo 02-04hr
 103
embryo 04-06hr
 
 54
embryo 06-08hr
 
 44
embryo 08-10hr
 
 94
embryo 10-12hr
 (359)
embryo 12-14hr
 (397)
embryo 14-16hr
 (359)
embryo 16-18hr
 (158)
embryo 18-20hr
 
 73
embryo 20-22hr
 
 52
embryo 22-24hr
 
 50
larva L1
 
 51
larva L2
 
 30
larva L3 12hr old
 
 9
larva L3 puffstage 1-2
 
 16
larva L3 puffstage 3-6
 
 47
larva L3 puffstage 7-9
 
 89
white prepupae new
 (110)
white prepupae 12hr
 (152)
white prepupae 24hr
 (190)
pupae 2d postWPP
 (128)
pupae 3d postWPP
 
 38
pupae 4d postWPP
 (134)
adult male 01day
 
 46
adult male 05day
 
 67
adult male 30day
 
 71
adult female 01day
 (1672)
adult female 05day
 (2765)
adult female 30day
 (2703)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2583)
embryo 02-04hr
 
 103
embryo 04-06hr
 
 54
embryo 06-08hr
 
 44
embryo 08-10hr
 
 94
embryo 10-12hr
 
 359
embryo 12-14hr
 
 397
embryo 14-16hr
 
 359
embryo 16-18hr
 
 158
embryo 18-20hr
 
 73
embryo 20-22hr
 
 52
embryo 22-24hr
 
 50
larva L1
 
 51
larva L2
 
 30
larva L3 12hr old
 
 9
larva L3 puffstage 1-2
 
 16
larva L3 puffstage 3-6
 
 47
larva L3 puffstage 7-9
 
 89
white prepupae new
 
 110
white prepupae 12hr
 
 152
white prepupae 24hr
 
 190
pupae 2d postWPP
 
 128
pupae 3d postWPP
 
 38
pupae 4d postWPP
 
 134
adult male 01day
 
 46
adult male 05day
 
 67
adult male 30day
 
 71
adult female 01day
 (1672)
adult female 05day
 (2765)
adult female 30day
 (2703)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2583
embryo 02-04hr
 
 103
embryo 04-06hr
 
 54
embryo 06-08hr
 
 44
embryo 08-10hr
 
 94
embryo 10-12hr
 
 359
embryo 12-14hr
 
 397
embryo 14-16hr
 
 359
embryo 16-18hr
 
 158
embryo 18-20hr
 
 73
embryo 20-22hr
 
 52
embryo 22-24hr
 
 50
larva L1
 
 51
larva L2
 
 30
larva L3 12hr old
 
 9
larva L3 puffstage 1-2
 
 16
larva L3 puffstage 3-6
 
 47
larva L3 puffstage 7-9
 
 89
white prepupae new
 
 110
white prepupae 12hr
 
 152
white prepupae 24hr
 
 190
pupae 2d postWPP
 
 128
pupae 3d postWPP
 
 38
pupae 4d postWPP
 
 134
adult male 01day
 
 46
adult male 05day
 
 67
adult male 30day
 
 71
adult female 01day
 
 1672
adult female 05day
 
 2765
adult female 30day
 
 2703
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2583
embryo 02-04hr
 
 103
embryo 04-06hr
 
 54
embryo 06-08hr
 
 44
embryo 08-10hr
 
 94
embryo 10-12hr
 
 359
embryo 12-14hr
 
 397
embryo 14-16hr
 
 359
embryo 16-18hr
 
 158
embryo 18-20hr
 
 73
embryo 20-22hr
 
 52
embryo 22-24hr
 
 50
larva L1
 
 51
larva L2
 
 30
larva L3 12hr old
 
 9
larva L3 puffstage 1-2
 
 16
larva L3 puffstage 3-6
 
 47
larva L3 puffstage 7-9
 
 89
white prepupae new
 
 110
white prepupae 12hr
 
 152
white prepupae 24hr
 
 190
pupae 2d postWPP
 
 128
pupae 3d postWPP
 
 38
pupae 4d postWPP
 
 134
adult male 01day
 
 46
adult male 05day
 
 67
adult male 30day
 
 71
adult female 01day
 
 1672
adult female 05day
 
 2765
adult female 30day
 
 2703
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0020248 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 2583
embryo 02-04hr
 
 103
embryo 04-06hr
 
 54
embryo 06-08hr
 
 44
embryo 08-10hr
 
 94
embryo 10-12hr
 
 359
embryo 12-14hr
 
 397
embryo 14-16hr
 
 359
embryo 16-18hr
 
 158
embryo 18-20hr
 
 73
embryo 20-22hr
 
 52
embryo 22-24hr
 
 50
larva L1
 
 51
larva L2
 
 30
larva L3 12hr old
 
 9
larva L3 puffstage 1-2
 
 16
larva L3 puffstage 3-6
 
 47
larva L3 puffstage 7-9
 
 89
white prepupae new
 
 110
white prepupae 12hr
 
 152
white prepupae 24hr
 
 190
pupae 2d postWPP
 
 128
pupae 3d postWPP
 
 38
pupae 4d postWPP
 
 134
adult male 01day
 
 46
adult male 05day
 
 67
adult male 30day
 
 71
adult female 01day
 
 1672
adult female 05day
 
 2765
adult female 30day
 
 2703
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2583)
embryo 02-04hr
 103
embryo 04-06hr
 
 54
embryo 06-08hr
 
 44
embryo 08-10hr
 
 94
embryo 10-12hr
 (359)
embryo 12-14hr
 (397)
embryo 14-16hr
 (359)
embryo 16-18hr
 (158)
embryo 18-20hr
 
 73
embryo 20-22hr
 
 52
embryo 22-24hr
 
 50
larva L1
 
 51
larva L2
 
 30
larva L3 12hr old
 
 9
larva L3 puffstage 1-2
 
 16
larva L3 puffstage 3-6
 
 47
larva L3 puffstage 7-9
 
 89
white prepupae new
 110
white prepupae 12hr
 (152)
white prepupae 24hr
 (190)
pupae 2d postWPP
 128
pupae 3d postWPP
 
 38
pupae 4d postWPP
 134
adult male 01day
 
 46
adult male 05day
 
 67
adult male 30day
 
 71
adult female 01day
 (1672)
adult female 05day
 (2765)
adult female 30day
 (2703)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2583)
embryo 02-04hr
 
 103
embryo 04-06hr
 
 54
embryo 06-08hr
 
 44
embryo 08-10hr
 
 94
embryo 10-12hr
 
 359
embryo 12-14hr
 
 397
embryo 14-16hr
 
 359
embryo 16-18hr
 
 158
embryo 18-20hr
 
 73
embryo 20-22hr
 
 52
embryo 22-24hr
 
 50
larva L1
 
 51
larva L2
 
 30
larva L3 12hr old
 
 9
larva L3 puffstage 1-2
 
 16
larva L3 puffstage 3-6
 
 47
larva L3 puffstage 7-9
 
 89
white prepupae new
 
 110
white prepupae 12hr
 
 152
white prepupae 24hr
 
 190
pupae 2d postWPP
 
 128
pupae 3d postWPP
 
 38
pupae 4d postWPP
 
 134
adult male 01day
 
 46
adult male 05day
 
 67
adult male 30day
 
 71
adult female 01day
 1672
adult female 05day
 (2765)
adult female 30day
 (2703)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2583
embryo 02-04hr
 
 103
embryo 04-06hr
 
 54
embryo 06-08hr
 
 44
embryo 08-10hr
 
 94
embryo 10-12hr
 
 359
embryo 12-14hr
 
 397
embryo 14-16hr
 
 359
embryo 16-18hr
 
 158
embryo 18-20hr
 
 73
embryo 20-22hr
 
 52
embryo 22-24hr
 
 50
larva L1
 
 51
larva L2
 
 30
larva L3 12hr old
 
 9
larva L3 puffstage 1-2
 
 16
larva L3 puffstage 3-6
 
 47
larva L3 puffstage 7-9
 
 89
white prepupae new
 
 110
white prepupae 12hr
 
 152
white prepupae 24hr
 
 190
pupae 2d postWPP
 
 128
pupae 3d postWPP
 
 38
pupae 4d postWPP
 
 134
adult male 01day
 
 46
adult male 05day
 
 67
adult male 30day
 
 71
adult female 01day
 
 1672
adult female 05day
 
 2765
adult female 30day
 
 2703
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2583
embryo 02-04hr
 
 103
embryo 04-06hr
 
 54
embryo 06-08hr
 
 44
embryo 08-10hr
 
 94
embryo 10-12hr
 
 359
embryo 12-14hr
 
 397
embryo 14-16hr
 
 359
embryo 16-18hr
 
 158
embryo 18-20hr
 
 73
embryo 20-22hr
 
 52
embryo 22-24hr
 
 50
larva L1
 
 51
larva L2
 
 30
larva L3 12hr old
 
 9
larva L3 puffstage 1-2
 
 16
larva L3 puffstage 3-6
 
 47
larva L3 puffstage 7-9
 
 89
white prepupae new
 
 110
white prepupae 12hr
 
 152
white prepupae 24hr
 
 190
pupae 2d postWPP
 
 128
pupae 3d postWPP
 
 38
pupae 4d postWPP
 
 134
adult male 01day
 
 46
adult male 05day
 
 67
adult male 30day
 
 71
adult female 01day
 
 1672
adult female 05day
 
 2765
adult female 30day
 
 2703
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0020248


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0020248
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult ovary.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0020248 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 65.325
Larval Midgut
 
 1.5
Larval Hindgut
 
 3.5
Larval Malpighian Tubules
 
 4
Larval Fat Body
 
 8.6
Larval Salivary Gland
 
 4.5
Larval Trachea
 
 0.45
Larval Carcass
 
 2.375
Adult Head
 
 5.3
Adult Eye
 
 4.575
Adult Brain
 
 18.2
Adult Thoracic-Abdominal Ganglion
 
 9.2
Adult Crop
 
 11.4
Adult Midgut
 
 1.1
Adult Hindgut
 
 5
Adult Malpighian Tubules
 
 6.7
Adult Fat Body
 
 13
Adult Salivary Gland no informative data
Adult Heart
 
 4
Adult VirginFemale Spermatheca
 
 8.8
Adult InseminatedFemale Spermatheca
 
 3.4
Adult Ovary
 
 509
Adult Testis
 
 3.1
Adult Male Accessory Gland
 
 4.4
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 65.325
Larval Midgut
 
 1.5
Larval Hindgut
 
 3.5
Larval Malpighian Tubules
 
 4
Larval Fat Body
 
 8.6
Larval Salivary Gland
 
 4.5
Larval Trachea
 
 0.45
Larval Carcass
 
 2.375
Adult Head
 
 5.3
Adult Eye
 
 4.575
Adult Brain
 
 18.2
Adult Thoracic-Abdominal Ganglion
 
 9.2
Adult Crop
 
 11.4
Adult Midgut
 
 1.1
Adult Hindgut
 
 5
Adult Malpighian Tubules
 
 6.7
Adult Fat Body
 
 13
Adult Salivary Gland no informative data
Adult Heart
 
 4
Adult VirginFemale Spermatheca
 
 8.8
Adult InseminatedFemale Spermatheca
 
 3.4
Adult Ovary
 509
Adult Testis
 
 3.1
Adult Male Accessory Gland
 
 4.4
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 65.325
Larval Midgut
 
 1.5
Larval Hindgut
 
 3.5
Larval Malpighian Tubules
 
 4
Larval Fat Body
 
 8.6
Larval Salivary Gland
 
 4.5
Larval Trachea
 
 0.45
Larval Carcass
 
 2.375
Adult Head
 
 5.3
Adult Eye
 
 4.575
Adult Brain
 
 18.2
Adult Thoracic-Abdominal Ganglion
 
 9.2
Adult Crop
 
 11.4
Adult Midgut
 
 1.1
Adult Hindgut
 
 5
Adult Malpighian Tubules
 
 6.7
Adult Fat Body
 
 13
Adult Salivary Gland no informative data
Adult Heart
 
 4
Adult VirginFemale Spermatheca
 
 8.8
Adult InseminatedFemale Spermatheca
 
 3.4
Adult Ovary
 
 509
Adult Testis
 
 3.1
Adult Male Accessory Gland
 
 4.4
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 65.325
Larval Midgut
 
 1.5
Larval Hindgut
 
 3.5
Larval Malpighian Tubules
 
 4
Larval Fat Body
 
 8.6
Larval Salivary Gland
 
 4.5
Larval Trachea
 
 0.45
Larval Carcass
 
 2.375
Adult Head
 
 5.3
Adult Eye
 
 4.575
Adult Brain
 
 18.2
Adult Thoracic-Abdominal Ganglion
 
 9.2
Adult Crop
 
 11.4
Adult Midgut
 
 1.1
Adult Hindgut
 
 5
Adult Malpighian Tubules
 
 6.7
Adult Fat Body
 
 13
Adult Salivary Gland no informative data
Adult Heart
 
 4
Adult VirginFemale Spermatheca
 
 8.8
Adult InseminatedFemale Spermatheca
 
 3.4
Adult Ovary
 
 509
Adult Testis
 
 3.1
Adult Male Accessory Gland
 
 4.4
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0020248 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 65.325
Larval Midgut
 
 1.5
Larval Hindgut
 
 3.5
Larval Malpighian Tubules
 
 4
Larval Fat Body
 
 8.6
Larval Salivary Gland
 
 4.5
Larval Trachea
 
 0.45
Larval Carcass
 
 2.375
Adult Head
 
 5.3
Adult Eye
 
 4.575
Adult Brain
 
 18.2
Adult Thoracic-Abdominal Ganglion
 
 9.2
Adult Crop
 
 11.4
Adult Midgut
 
 1.1
Adult Hindgut
 
 5
Adult Malpighian Tubules
 
 6.7
Adult Fat Body
 
 13
Adult Salivary Gland no informative data
Adult Heart
 
 4
Adult VirginFemale Spermatheca
 
 8.8
Adult InseminatedFemale Spermatheca
 
 3.4
Adult Ovary
 
 509
Adult Testis
 
 3.1
Adult Male Accessory Gland
 
 4.4
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 65.325
Larval Midgut
 
 1.5
Larval Hindgut
 
 3.5
Larval Malpighian Tubules
 
 4
Larval Fat Body
 
 8.6
Larval Salivary Gland
 
 4.5
Larval Trachea
 
 0.45
Larval Carcass
 
 2.375
Adult Head
 
 5.3
Adult Eye
 
 4.575
Adult Brain
 
 18.2
Adult Thoracic-Abdominal Ganglion
 
 9.2
Adult Crop
 
 11.4
Adult Midgut
 
 1.1
Adult Hindgut
 
 5
Adult Malpighian Tubules
 
 6.7
Adult Fat Body
 
 13
Adult Salivary Gland no informative data
Adult Heart
 
 4
Adult VirginFemale Spermatheca
 
 8.8
Adult InseminatedFemale Spermatheca
 
 3.4
Adult Ovary
 509
Adult Testis
 
 3.1
Adult Male Accessory Gland
 
 4.4
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 65.325
Larval Midgut
 
 1.5
Larval Hindgut
 
 3.5
Larval Malpighian Tubules
 
 4
Larval Fat Body
 
 8.6
Larval Salivary Gland
 
 4.5
Larval Trachea
 
 0.45
Larval Carcass
 
 2.375
Adult Head
 
 5.3
Adult Eye
 
 4.575
Adult Brain
 
 18.2
Adult Thoracic-Abdominal Ganglion
 
 9.2
Adult Crop
 
 11.4
Adult Midgut
 
 1.1
Adult Hindgut
 
 5
Adult Malpighian Tubules
 
 6.7
Adult Fat Body
 
 13
Adult Salivary Gland no informative data
Adult Heart
 
 4
Adult VirginFemale Spermatheca
 
 8.8
Adult InseminatedFemale Spermatheca
 
 3.4
Adult Ovary
 
 509
Adult Testis
 
 3.1
Adult Male Accessory Gland
 
 4.4
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 65.325
Larval Midgut
 
 1.5
Larval Hindgut
 
 3.5
Larval Malpighian Tubules
 
 4
Larval Fat Body
 
 8.6
Larval Salivary Gland
 
 4.5
Larval Trachea
 
 0.45
Larval Carcass
 
 2.375
Adult Head
 
 5.3
Adult Eye
 
 4.575
Adult Brain
 
 18.2
Adult Thoracic-Abdominal Ganglion
 
 9.2
Adult Crop
 
 11.4
Adult Midgut
 
 1.1
Adult Hindgut
 
 5
Adult Malpighian Tubules
 
 6.7
Adult Fat Body
 
 13
Adult Salivary Gland no informative data
Adult Heart
 
 4
Adult VirginFemale Spermatheca
 
 8.8
Adult InseminatedFemale Spermatheca
 
 3.4
Adult Ovary
 
 509
Adult Testis
 
 3.1
Adult Male Accessory Gland
 
 4.4
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland no informative data
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass no informative data

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 5.3
 
NA 
Eye
 
 4.575
 
NA 
Brain
 
 18.2
 
65.325 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 9.2
 
NA 
Crop
 
 11.4
 
1.5 
Midgut
 
 1.1
 
3.5 
Hindgut
 
 5
 
Malpighian Tubules
 
 6.7
 
8.6 
Fat Body
 
 13
 
4.5 
Salivary Gland
 
 no informative data
 
NA 
Heart
 
 4
 
0.45 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 8.8
 
NA 
InseminatedFemale Spermatheca
 
 3.4
 
NA 
Ovary
 
 509
 
NA 
Testis
 
 3.1
 
NA 
Male Accessory Gland
 
 4.4
 
2.375 
Carcass
 
 no informative data

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 26 )
For All Classical Alleles Show

Allele of stetClassMutagenStocksKnown lesion
stet5-SZ-3468
1 --
stetd006501 --
stetd049581 --
stetd05144b
1 --
stete027681 --
stetEY071081 --
stetEY082011 Yes
stetf059071 --
stetf060181 --
stet10 --
stet1A30 Yes
stet20 Yes
stet30 Yes
stet8710 Yes
stet8A0 Yes
stet8B0 --
stet8F0 --
stet90 --
stetf071120 --
stetunspecified
0 --
stetz3-03690 Yes
stetz3-09190 --
stetz3-22440 --
stetz3-36710 Yes
stetz3-38350 Yes
stetz3-48060 Yes
hide Alleles Carried on Transgenic Constructs ( 9 )
For All Alleles Carried on Transgenic Constructs Show

Allele of stetClassMutagenStocksKnown lesion
stetGD22442 Yes
steta.Scer\UAS.P\T0 Yes
stetAct5C.T:Avic\GFP0 Yes
stetbam.PL0 Yes
stetdsRNA.cUa0 Yes
stetScer\UAS.cGa0 Yes
stetScer\UAS.cSa0 Yes
stetScer\UAS.cUa0 Yes
stetScer\UAS.P\T.cGa0 Yes
hide Aneuploid Aberrations
Disrupted in
Not disrupted in
Partially disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
characterization construct
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap
hide Gene Ontology: Function, Process & Cellular Component ( 7 unique terms )
hide Terms Based on Experimental Evidence ( 0 terms )
hide Terms Based on Predictions or Assertions ( 7 terms )
Molecular Function
CV term
References
non-traceable author statement
Biological Process
CV term
References
inferred from electronic annotation with InterPro:IPR002610
Cellular Component
CV term
References
non-traceable author statement
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
stet allele
Gene
References
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Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
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hide Stocks Listed in FlyBase ( 11 )
Bloomington
Harvard
Kyoto
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 88 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
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Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Source for merge of: rho-2 CG12504
Source for merge of: rhomboid-2 CG12083
Source for merge of: stet rho-2
Additional comments
3' exon of release 2 annotation CG12083 split into a new gene (CG32319) in release 3 of the genome annotation, while the 5' portion of CG12083 corresponds to part of stet (CG33166). In addition, the release 3 annotation for stet (CG33166) contains sequences corresponding to release 2 annotation CG12504.
hide Other Comments
Somatic support cells fail to surround germ cells properly and germ cells accumulate at early stages of differentiation in stet mutants.
Mutations affect the early stages of differentiation in the male germline.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 15 )
Reported As
Symbol Synonym
CG12083
CG12504
 
CG33166
 
Name Synonym
brother of rhomboid
Stem cell tumor
Secondary FlyBase IDs
  • FBgn0035221
  • FBgn0035223
  • FBgn0041725
  • FBgn0053166
hide References ( 47 )
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hide Recent research papers ( 4 )
Jiang et al., 2011, Cell Stem Cell 8(1): 84--95
EGFR/Ras/MAPK Signaling Mediates Adult Midgut Epithelial Homeostasis and Regeneration in Drosophila. [FBrf0212694]
Parrott et al., 2011, PLoS ONE 6(9): e25087
Nucleoporin98-96 Function Is Required for Transit Amplification Divisions in the Germ Line of Drosophila melanogaster. [FBrf0216255]
Kitadate and Kobayashi, 2010, Proc. Natl. Acad. Sci. U.S.A. 107(32): 14241--14246
Notch and Egfr signaling act antagonistically to regulate germ-line stem cell niche formation in Drosophila male embryonic gonads. [FBrf0211513]
Liu et al., 2010, Sci. Signal. 3(132): ra57
The Drosophila Female Germline Stem Cell Lineage Acts to Spatially Restrict DPP Function Within the Niche. [FBrf0211426]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2010