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Gene Dmel\drongo

General Information
Symbol	Dmel\drongo	Species	D. melanogaster
Name	drongo	Annotation symbol	CG3365
Feature type	protein_coding_gene	FlyBase ID	FBgn0020304
Gene Model Status	Current	Stock availability	8 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	21E2-21E2	Sequence location	2L:833,584..851,071 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene drongo is referred to in FlyBase by the symbol Dmel\drongo (CG3365, FBgn0020304). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: ARF GTPase activator activity; zinc ion binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: regulation of ARF GTPase activity. 10 alleles are reported. No phenotypic data is available. It has 5 annotated transcripts and 5 annotated polypeptides. Protein features are: Arf GTPase activating protein. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 and 12-18 hour embryonic stages, during late larval stages, at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult thoracico-abdominal ganglion, adult crop, adult hindgut, adult heart, larval fat body, larval trachea, adult spermathecae, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval/adult central nervous system, larval/adult midgut, larval hindgut, larval/adult Malpighian tubules, adult fat body, larval/adult salivary gland, adult ovary, adult male reproductive system, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1623693_a_at completely aligns to an exonic region of only a subset of 4 of the 5 FlyBase-annotated transcript isoforms of drongo. Gene sequence location is 2L:833584..851071.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03	Controlled Vocabulary Terms cellular_component molecular_function biological_process
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 21E2-21E2   Limits computationally determined from genome sequence between P{lacW}l(2)k09610k09610&P{lacW}Sk09538a and P{PZ}l(2)1068510685&P{lacW}Tango14k00619
Experimentally Determined Cytological Location
Cytogenetic map Notes References 21D-21D     (Harris, 1998.10.5)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\drongo for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47 Annotated transcripts do not represent all supported alternative splices within 5' UTR. Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) drongo-RC FBtr0078037  NM_164392   2672   447 drongo-RF FBtr0302120  NM_001169377   3986   673 drongo-RG FBtr0302121  NM_001169378   3143   603 drongo-RH FBtr0302612  NM_057891   3518   517 drongo-RI FBtr0334763  NM_001144291   2625   514
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein drongo-PC   FBpp0077701   47.9   447   6.99     NP_722660   AAN10487 drongo-PF   FBpp0291330   73.2   673   6.32     NP_001162848   ACZ94140 drongo-PG   FBpp0291331   65.6   603   5.59     NP_001162849   ACZ94141 drongo-PH   FBpp0291768   55.5   517   8.23     NP_477239   AAF51447 drongo-PI   FBpp0306804   55.3   514   8.06     NP_001137763   ACL82970
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Arf GTPase activating protein (IPR001164)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014134 AAF51447   AE014134 AAN10487   AC004546   AE014134 ACL82970   AE014134 ACZ94140   AE014134 ACZ94141   AF097364 AAC71035   AI064515   AI134585   AI259272   AI293136   AI405895   AI519797   AI543873   AW940615   AX094705   AY119526 AAM50180   AZ933404   BF501458   BF503571   BG634392   BG639214   BG639216   BI163191   BI163897   BI166247   BI238849   BI239439   BI356051   BI363727   BI366025   BI370544   BI371268   BI373026   BI375293   BI485696   BI485729   BI564516   BI564971   BI565791   BI578201   BI578242   BI592706   BI593138   BI604930   BI605887   BI606961   BI610100   BI612655   BI613592   BI615209   BI617483   BI618749   BI620721   BI627499   BI628765   BI629558   BT072822   BT099777   BT099783   CA805101   CA807045   CA807440   CA807500   CO263372   CO266938   CO273684   CO282237   CO291832   CO294939   CO295531   CO296818   CO307074   CO308492   CO318280   CO319004   CO339634   CO341158   CZ467896   CZ469934   EC070786   EC078261   EC198049   EC201263   EC201801   EC212824   EC212902   EC226395   EC227400   EC228412   EC242703   EC245428   EC254332   EC258248   GH941937   GH944122   GH947530   GH947831   GH959598   GH959961   GH960080   GH961309   GH962633   GH963825   GH967162   GH967970   GH968045   GH970530   GH970745   GH974813   GH976038   GH977859   GH978669   GH978685   GH978927   GH979138   GH980839   GH981011   GH982986   GH985070
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8MRM4 Q9VPU3 E1JHR0 E1JHR1 O96639 Q9VPU2 B7Z004 B7Z005
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   anlage in statu nascendi   (Fisher et al., 2012) central brain anlage in statu nascendi   (Fisher et al., 2012) dorsal ectoderm anlage   (Fisher et al., 2012) Comment:anlage in statu nascendi ventral ectoderm anlage   (Fisher et al., 2012) Comment:anlage in statu nascendi antennal anlage in statu nascendi   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage in statu nascendi dorsal head epidermis anlage in statu nascendi   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage in statu nascendi visual anlage in statu nascendi   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage in statu nascendi embryonic stage 7 -- 8   antennal anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage central brain anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage dorsal head epidermis anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage visual anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage trunk mesoderm   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) ventral nerve cord primordium   (Fisher et al., 2012) Comment:reported as ventral nerve cord anlage embryonic stage 9 -- 10   antennal primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium central brain primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium visual primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium dorsal head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium lateral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium ventral head epidermis primordium   (Fisher et al., 2012) Comment:reported as procephalic ectoderm primordium head mesoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) ventral nerve cord primordium   (Fisher et al., 2012) embryonic stage 11 -- 12   dorsal epidermis primordium   (Fisher et al., 2012) somatic muscle primordium   (Fisher et al., 2012) Comment:reported as muscle system primordium visceral muscle primordium   (Fisher et al., 2012) Comment:reported as muscle system primordium trunk mesoderm   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic dorsal epidermis   (Fisher et al., 2012) embryonic head epidermis   (Fisher et al., 2012) embryonic/larval dorsal vessel   (Fisher et al., 2012) embryonic/larval somatic muscle   (Fisher et al., 2012) lateral cord neuron   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult thoracico-abdominal ganglion, adult crop, adult hindgut, adult heart, larval fat body, larval trachea, adult spermathecae, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval/adult central nervous system, larval/adult midgut, larval hindgut, larval/adult Malpighian tubules, adult fat body, larval/adult salivary gland, adult ovary, adult male reproductive system, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    215.375 Larval Midgut    162.1 Larval Hindgut    297 Larval Malpighian Tubules    265.7 Larval Fat Body    960.6 Larval Salivary Gland    214.1 Larval Trachea    643.575 Larval Carcass    737.225 Adult Head    409.8 Adult Eye    979.675 Adult Brain    453.5 Adult Thoracic-Abdominal Ganglion    579.9 Adult Crop    1353.9 Adult Midgut    193.5 Adult Hindgut    698.7 Adult Malpighian Tubules    256.4 Adult Fat Body    289.6 Adult Salivary Gland    203.7 Adult Heart    559.225 Adult VirginFemale Spermatheca    753.4 Adult InseminatedFemale Spermatheca    531.3 Adult Ovary    222.9 Adult Testis    146.9 Adult Male Accessory Gland    104.3 Adult Carcass    427.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    215.375 Larval Midgut    162.1 Larval Hindgut    297 Larval Malpighian Tubules    265.7 Larval Fat Body  (960.6) Larval Salivary Gland    214.1 Larval Trachea  (643.575) Larval Carcass  (737.225) Adult Head    409.8 Adult Eye  (979.675) Adult Brain    453.5 Adult Thoracic-Abdominal Ganglion  (579.9) Adult Crop  (1353.9) Adult Midgut    193.5 Adult Hindgut  (698.7) Adult Malpighian Tubules    256.4 Adult Fat Body    289.6 Adult Salivary Gland    203.7 Adult Heart  (559.225) Adult VirginFemale Spermatheca  (753.4) Adult InseminatedFemale Spermatheca  531.3 Adult Ovary    222.9 Adult Testis    146.9 Adult Male Accessory Gland    104.3 Adult Carcass    427.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    215.375 Larval Midgut    162.1 Larval Hindgut    297 Larval Malpighian Tubules    265.7 Larval Fat Body    960.6 Larval Salivary Gland    214.1 Larval Trachea    643.575 Larval Carcass    737.225 Adult Head    409.8 Adult Eye    979.675 Adult Brain    453.5 Adult Thoracic-Abdominal Ganglion    579.9 Adult Crop  (1353.9) Adult Midgut    193.5 Adult Hindgut    698.7 Adult Malpighian Tubules    256.4 Adult Fat Body    289.6 Adult Salivary Gland    203.7 Adult Heart    559.225 Adult VirginFemale Spermatheca    753.4 Adult InseminatedFemale Spermatheca    531.3 Adult Ovary    222.9 Adult Testis    146.9 Adult Male Accessory Gland    104.3 Adult Carcass    427.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    215.375 Larval Midgut    162.1 Larval Hindgut    297 Larval Malpighian Tubules    265.7 Larval Fat Body    960.6 Larval Salivary Gland    214.1 Larval Trachea    643.575 Larval Carcass    737.225 Adult Head    409.8 Adult Eye    979.675 Adult Brain    453.5 Adult Thoracic-Abdominal Ganglion    579.9 Adult Crop    1353.9 Adult Midgut    193.5 Adult Hindgut    698.7 Adult Malpighian Tubules    256.4 Adult Fat Body    289.6 Adult Salivary Gland    203.7 Adult Heart    559.225 Adult VirginFemale Spermatheca    753.4 Adult InseminatedFemale Spermatheca    531.3 Adult Ovary    222.9 Adult Testis    146.9 Adult Male Accessory Gland    104.3 Adult Carcass    427.1 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    215.375 Larval Midgut    162.1 Larval Hindgut    297 Larval Malpighian Tubules    265.7 Larval Fat Body    960.6 Larval Salivary Gland    214.1 Larval Trachea    643.575 Larval Carcass    737.225 Adult Head    409.8 Adult Eye    979.675 Adult Brain    453.5 Adult Thoracic-Abdominal Ganglion    579.9 Adult Crop    1353.9 Adult Midgut    193.5 Adult Hindgut    698.7 Adult Malpighian Tubules    256.4 Adult Fat Body    289.6 Adult Salivary Gland    203.7 Adult Heart    559.225 Adult VirginFemale Spermatheca    753.4 Adult InseminatedFemale Spermatheca    531.3 Adult Ovary    222.9 Adult Testis    146.9 Adult Male Accessory Gland    104.3 Adult Carcass    427.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    215.375 Larval Midgut    162.1 Larval Hindgut    297 Larval Malpighian Tubules    265.7 Larval Fat Body  (960.6) Larval Salivary Gland    214.1 Larval Trachea  643.575 Larval Carcass  737.225 Adult Head    409.8 Adult Eye  (979.675) Adult Brain    453.5 Adult Thoracic-Abdominal Ganglion  579.9 Adult Crop  (1353.9) Adult Midgut    193.5 Adult Hindgut  698.7 Adult Malpighian Tubules    256.4 Adult Fat Body    289.6 Adult Salivary Gland    203.7 Adult Heart  559.225 Adult VirginFemale Spermatheca  753.4 Adult InseminatedFemale Spermatheca  531.3 Adult Ovary    222.9 Adult Testis    146.9 Adult Male Accessory Gland    104.3 Adult Carcass    427.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    215.375 Larval Midgut    162.1 Larval Hindgut    297 Larval Malpighian Tubules    265.7 Larval Fat Body    960.6 Larval Salivary Gland    214.1 Larval Trachea    643.575 Larval Carcass    737.225 Adult Head    409.8 Adult Eye    979.675 Adult Brain    453.5 Adult Thoracic-Abdominal Ganglion    579.9 Adult Crop  1353.9 Adult Midgut    193.5 Adult Hindgut    698.7 Adult Malpighian Tubules    256.4 Adult Fat Body    289.6 Adult Salivary Gland    203.7 Adult Heart    559.225 Adult VirginFemale Spermatheca    753.4 Adult InseminatedFemale Spermatheca    531.3 Adult Ovary    222.9 Adult Testis    146.9 Adult Male Accessory Gland    104.3 Adult Carcass    427.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    215.375 Larval Midgut    162.1 Larval Hindgut    297 Larval Malpighian Tubules    265.7 Larval Fat Body    960.6 Larval Salivary Gland    214.1 Larval Trachea    643.575 Larval Carcass    737.225 Adult Head    409.8 Adult Eye    979.675 Adult Brain    453.5 Adult Thoracic-Abdominal Ganglion    579.9 Adult Crop    1353.9 Adult Midgut    193.5 Adult Hindgut    698.7 Adult Malpighian Tubules    256.4 Adult Fat Body    289.6 Adult Salivary Gland    203.7 Adult Heart    559.225 Adult VirginFemale Spermatheca    753.4 Adult InseminatedFemale Spermatheca    531.3 Adult Ovary    222.9 Adult Testis    146.9 Adult Male Accessory Gland    104.3 Adult Carcass    427.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    409.8   NA  Eye    979.675   NA  Brain    453.5   215.375  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    579.9   NA  Crop    1353.9   162.1  Midgut    193.5   297  Hindgut    698.7   265.7  Malpighian Tubules    256.4   960.6  Fat Body    289.6   214.1  Salivary Gland    203.7   NA  Heart    559.225   643.575  Trachea    NA   NA  VirginFemale Spermatheca    753.4   NA  InseminatedFemale Spermatheca    531.3   NA  Ovary    222.9   NA  Testis    146.9   NA  Male Accessory Gland    104.3   737.225  Carcass    427.1 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    45 central nervous system, larvae L3    33 central nervous system, pupae P8    38 head, virgin 1-day female    51 head, virgin 4-day female    54 head, virgin 20-day female    53 head, mated 1-day female    53 head, mated 4-day female    39 head, mated 20-day female    40 head, mated 1-day male    69 head, mated 4-day male    63 head, mated 20-day male    69 salivary gland, larvae L3 wandering    8 salivary gland, white prepupae    62 digestive system, larvae L3 wandering    56 digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    21 fat body, larvae L3 wandering    30 fat body, white prepupae    184 fat body, pupae P8    94 carcass, larvae L3 wandering    58 carcass, 1-day adult    34 carcass, 4-day adult    31 carcass, 20-day adult    37 ovary, virgin 4-day female    43 ovary, mated 4-day female    45 testis, mated 4-day male    22 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (45) central nervous system, larvae L3  (33) central nervous system, pupae P8  (38) head, virgin 1-day female  (51) head, virgin 4-day female  (54) head, virgin 20-day female  (53) head, mated 1-day female  (53) head, mated 4-day female  (39) head, mated 20-day female  (40) head, mated 1-day male  (69) head, mated 4-day male  (63) head, mated 20-day male  (69) salivary gland, larvae L3 wandering    8 salivary gland, white prepupae  (62) digestive system, larvae L3 wandering  (56) digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    21 fat body, larvae L3 wandering  (30) fat body, white prepupae  (184) fat body, pupae P8  (94) carcass, larvae L3 wandering  (58) carcass, 1-day adult  (34) carcass, 4-day adult  (31) carcass, 20-day adult  (37) ovary, virgin 4-day female  (43) ovary, mated 4-day female  (45) testis, mated 4-day male    22 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    45 central nervous system, larvae L3    33 central nervous system, pupae P8    38 head, virgin 1-day female    51 head, virgin 4-day female    54 head, virgin 20-day female    53 head, mated 1-day female    53 head, mated 4-day female    39 head, mated 20-day female    40 head, mated 1-day male    69 head, mated 4-day male    63 head, mated 20-day male    69 salivary gland, larvae L3 wandering    8 salivary gland, white prepupae    62 digestive system, larvae L3 wandering    56 digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    21 fat body, larvae L3 wandering    30 fat body, white prepupae  (184) fat body, pupae P8    94 carcass, larvae L3 wandering    58 carcass, 1-day adult    34 carcass, 4-day adult    31 carcass, 20-day adult    37 ovary, virgin 4-day female    43 ovary, mated 4-day female    45 testis, mated 4-day male    22 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    45 central nervous system, larvae L3    33 central nervous system, pupae P8    38 head, virgin 1-day female    51 head, virgin 4-day female    54 head, virgin 20-day female    53 head, mated 1-day female    53 head, mated 4-day female    39 head, mated 20-day female    40 head, mated 1-day male    69 head, mated 4-day male    63 head, mated 20-day male    69 salivary gland, larvae L3 wandering    8 salivary gland, white prepupae    62 digestive system, larvae L3 wandering    56 digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    21 fat body, larvae L3 wandering    30 fat body, white prepupae    184 fat body, pupae P8    94 carcass, larvae L3 wandering    58 carcass, 1-day adult    34 carcass, 4-day adult    31 carcass, 20-day adult    37 ovary, virgin 4-day female    43 ovary, mated 4-day female    45 testis, mated 4-day male    22 accessory gland, mated 4-day male    8 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    45 central nervous system, larvae L3    33 central nervous system, pupae P8    38 head, virgin 1-day female    51 head, virgin 4-day female    54 head, virgin 20-day female    53 head, mated 1-day female    53 head, mated 4-day female    39 head, mated 20-day female    40 head, mated 1-day male    69 head, mated 4-day male    63 head, mated 20-day male    69 salivary gland, larvae L3 wandering    8 salivary gland, white prepupae    62 digestive system, larvae L3 wandering    56 digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    21 fat body, larvae L3 wandering    30 fat body, white prepupae    184 fat body, pupae P8    94 carcass, larvae L3 wandering    58 carcass, 1-day adult    34 carcass, 4-day adult    31 carcass, 20-day adult    37 ovary, virgin 4-day female    43 ovary, mated 4-day female    45 testis, mated 4-day male    22 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (45) central nervous system, larvae L3  (33) central nervous system, pupae P8  (38) head, virgin 1-day female  (51) head, virgin 4-day female  (54) head, virgin 20-day female  (53) head, mated 1-day female  (53) head, mated 4-day female  (39) head, mated 20-day female  (40) head, mated 1-day male  (69) head, mated 4-day male  (63) head, mated 20-day male  (69) salivary gland, larvae L3 wandering    8 salivary gland, white prepupae  (62) digestive system, larvae L3 wandering  (56) digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    21 fat body, larvae L3 wandering  30 fat body, white prepupae  (184) fat body, pupae P8  (94) carcass, larvae L3 wandering  (58) carcass, 1-day adult  (34) carcass, 4-day adult  31 carcass, 20-day adult  (37) ovary, virgin 4-day female  (43) ovary, mated 4-day female  (45) testis, mated 4-day male    22 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    45 central nervous system, larvae L3    33 central nervous system, pupae P8    38 head, virgin 1-day female    51 head, virgin 4-day female    54 head, virgin 20-day female    53 head, mated 1-day female    53 head, mated 4-day female    39 head, mated 20-day female    40 head, mated 1-day male    69 head, mated 4-day male    63 head, mated 20-day male    69 salivary gland, larvae L3 wandering    8 salivary gland, white prepupae    62 digestive system, larvae L3 wandering    56 digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    21 fat body, larvae L3 wandering    30 fat body, white prepupae  (184) fat body, pupae P8    94 carcass, larvae L3 wandering    58 carcass, 1-day adult    34 carcass, 4-day adult    31 carcass, 20-day adult    37 ovary, virgin 4-day female    43 ovary, mated 4-day female    45 testis, mated 4-day male    22 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    45 central nervous system, larvae L3    33 central nervous system, pupae P8    38 head, virgin 1-day female    51 head, virgin 4-day female    54 head, virgin 20-day female    53 head, mated 1-day female    53 head, mated 4-day female    39 head, mated 20-day female    40 head, mated 1-day male    69 head, mated 4-day male    63 head, mated 20-day male    69 salivary gland, larvae L3 wandering    8 salivary gland, white prepupae    62 digestive system, larvae L3 wandering    56 digestive system, 1-day adult    14 digestive system, 4-day adult    18 digestive system, 20-day adult    21 fat body, larvae L3 wandering    30 fat body, white prepupae    184 fat body, pupae P8    94 carcass, larvae L3 wandering    58 carcass, 1-day adult    34 carcass, 4-day adult    31 carcass, 20-day adult    37 ovary, virgin 4-day female    43 ovary, mated 4-day female    45 testis, mated 4-day male    22 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 and 12-18 hour embryonic stages, during late larval stages, at stages throughout the pupal period. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    63 embryo 04-06hr    118 embryo 06-08hr    48 embryo 08-10hr    28 embryo 10-12hr    26 embryo 12-14hr    32 embryo 14-16hr    61 embryo 16-18hr    38 embryo 18-20hr    34 embryo 20-22hr    28 embryo 22-24hr    29 larva L1    13 larva L2    15 larva L3 12hr old    18 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    44 larva L3 puffstage 7-9    69 white prepupae new    69 white prepupae 12hr    120 white prepupae 24hr    50 pupae 2d postWPP    96 pupae 3d postWPP    37 pupae 4d postWPP    100 adult male 01day    42 adult male 05day    38 adult male 30day    36 adult female 01day    43 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (38) embryo 02-04hr  (63) embryo 04-06hr  (118) embryo 06-08hr  (48) embryo 08-10hr  (28) embryo 10-12hr  26 embryo 12-14hr  (32) embryo 14-16hr  (61) embryo 16-18hr  (38) embryo 18-20hr  (34) embryo 20-22hr  (28) embryo 22-24hr  (29) larva L1    13 larva L2    15 larva L3 12hr old    18 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6  (44) larva L3 puffstage 7-9  (69) white prepupae new  (69) white prepupae 12hr  (120) white prepupae 24hr  (50) pupae 2d postWPP  (96) pupae 3d postWPP  (37) pupae 4d postWPP  (100) adult male 01day  (42) adult male 05day  (38) adult male 30day  (36) adult female 01day  (43) adult female 05day  (33) adult female 30day  (32) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    63 embryo 04-06hr  (118) embryo 06-08hr    48 embryo 08-10hr    28 embryo 10-12hr    26 embryo 12-14hr    32 embryo 14-16hr    61 embryo 16-18hr    38 embryo 18-20hr    34 embryo 20-22hr    28 embryo 22-24hr    29 larva L1    13 larva L2    15 larva L3 12hr old    18 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    44 larva L3 puffstage 7-9    69 white prepupae new    69 white prepupae 12hr  (120) white prepupae 24hr    50 pupae 2d postWPP    96 pupae 3d postWPP    37 pupae 4d postWPP    100 adult male 01day    42 adult male 05day    38 adult male 30day    36 adult female 01day    43 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    63 embryo 04-06hr    118 embryo 06-08hr    48 embryo 08-10hr    28 embryo 10-12hr    26 embryo 12-14hr    32 embryo 14-16hr    61 embryo 16-18hr    38 embryo 18-20hr    34 embryo 20-22hr    28 embryo 22-24hr    29 larva L1    13 larva L2    15 larva L3 12hr old    18 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    44 larva L3 puffstage 7-9    69 white prepupae new    69 white prepupae 12hr    120 white prepupae 24hr    50 pupae 2d postWPP    96 pupae 3d postWPP    37 pupae 4d postWPP    100 adult male 01day    42 adult male 05day    38 adult male 30day    36 adult female 01day    43 adult female 05day    33 adult female 30day    32 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    63 embryo 04-06hr    118 embryo 06-08hr    48 embryo 08-10hr    28 embryo 10-12hr    26 embryo 12-14hr    32 embryo 14-16hr    61 embryo 16-18hr    38 embryo 18-20hr    34 embryo 20-22hr    28 embryo 22-24hr    29 larva L1    13 larva L2    15 larva L3 12hr old    18 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    44 larva L3 puffstage 7-9    69 white prepupae new    69 white prepupae 12hr    120 white prepupae 24hr    50 pupae 2d postWPP    96 pupae 3d postWPP    37 pupae 4d postWPP    100 adult male 01day    42 adult male 05day    38 adult male 30day    36 adult female 01day    43 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (38) embryo 02-04hr  (63) embryo 04-06hr  (118) embryo 06-08hr  (48) embryo 08-10hr  28 embryo 10-12hr  26 embryo 12-14hr  32 embryo 14-16hr  (61) embryo 16-18hr  (38) embryo 18-20hr  (34) embryo 20-22hr  28 embryo 22-24hr  29 larva L1    13 larva L2    15 larva L3 12hr old    18 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6  (44) larva L3 puffstage 7-9  (69) white prepupae new  (69) white prepupae 12hr  (120) white prepupae 24hr  (50) pupae 2d postWPP  (96) pupae 3d postWPP  (37) pupae 4d postWPP  (100) adult male 01day  (42) adult male 05day  (38) adult male 30day  (36) adult female 01day  (43) adult female 05day  (33) adult female 30day  32 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    63 embryo 04-06hr  118 embryo 06-08hr    48 embryo 08-10hr    28 embryo 10-12hr    26 embryo 12-14hr    32 embryo 14-16hr    61 embryo 16-18hr    38 embryo 18-20hr    34 embryo 20-22hr    28 embryo 22-24hr    29 larva L1    13 larva L2    15 larva L3 12hr old    18 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    44 larva L3 puffstage 7-9    69 white prepupae new    69 white prepupae 12hr  120 white prepupae 24hr    50 pupae 2d postWPP    96 pupae 3d postWPP    37 pupae 4d postWPP    100 adult male 01day    42 adult male 05day    38 adult male 30day    36 adult female 01day    43 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    38 embryo 02-04hr    63 embryo 04-06hr    118 embryo 06-08hr    48 embryo 08-10hr    28 embryo 10-12hr    26 embryo 12-14hr    32 embryo 14-16hr    61 embryo 16-18hr    38 embryo 18-20hr    34 embryo 20-22hr    28 embryo 22-24hr    29 larva L1    13 larva L2    15 larva L3 12hr old    18 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    44 larva L3 puffstage 7-9    69 white prepupae new    69 white prepupae 12hr    120 white prepupae 24hr    50 pupae 2d postWPP    96 pupae 3d postWPP    37 pupae 4d postWPP    100 adult male 01day    42 adult male 05day    38 adult male 30day    36 adult female 01day    43 adult female 05day    33 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    71 Schneider line 2 Sg4    34 embryonic 1182-4H    78 embryonic GM2    84 embryonic Kc167    172 embryonic S1    163 embryonic S3    12 leg disc CME L1    51 wing disc CME-W2    37 wing disc ML-DmD8    31 wing disc ML-DmD9    91 wing disc ML-DmD16-c3    98 wing disc ML-DmD21    38 wing disc ML-DmD32    89 haltere disc ML-DmD17-c3    55 eye-antennal disc ML-DmD11    69 antennal disc ML-DmD20-c5    53 mixed discs ML-DmD4-c1    33 CNS ML-DmBG1-c1    64 CNS ML-DmBG2-c2    50 tumorous blood cells mbn2    65 ovary fGS/OSS    172 ovary OSC    154 ovary OSS    118 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (71) Schneider line 2 Sg4  (34) embryonic 1182-4H  (78) embryonic GM2  (84) embryonic Kc167  (172) embryonic S1  (163) embryonic S3    12 leg disc CME L1  (51) wing disc CME-W2  (37) wing disc ML-DmD8  (31) wing disc ML-DmD9  (91) wing disc ML-DmD16-c3  (98) wing disc ML-DmD21  (38) wing disc ML-DmD32  (89) haltere disc ML-DmD17-c3  (55) eye-antennal disc ML-DmD11  (69) antennal disc ML-DmD20-c5  (53) mixed discs ML-DmD4-c1  (33) CNS ML-DmBG1-c1  (64) CNS ML-DmBG2-c2  (50) tumorous blood cells mbn2  (65) ovary fGS/OSS  (172) ovary OSC  (154) ovary OSS  (118) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    71 Schneider line 2 Sg4    34 embryonic 1182-4H    78 embryonic GM2    84 embryonic Kc167  (172) embryonic S1  (163) embryonic S3    12 leg disc CME L1    51 wing disc CME-W2    37 wing disc ML-DmD8    31 wing disc ML-DmD9    91 wing disc ML-DmD16-c3    98 wing disc ML-DmD21    38 wing disc ML-DmD32    89 haltere disc ML-DmD17-c3    55 eye-antennal disc ML-DmD11    69 antennal disc ML-DmD20-c5    53 mixed discs ML-DmD4-c1    33 CNS ML-DmBG1-c1    64 CNS ML-DmBG2-c2    50 tumorous blood cells mbn2    65 ovary fGS/OSS  (172) ovary OSC  (154) ovary OSS  (118) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    71 Schneider line 2 Sg4    34 embryonic 1182-4H    78 embryonic GM2    84 embryonic Kc167    172 embryonic S1    163 embryonic S3    12 leg disc CME L1    51 wing disc CME-W2    37 wing disc ML-DmD8    31 wing disc ML-DmD9    91 wing disc ML-DmD16-c3    98 wing disc ML-DmD21    38 wing disc ML-DmD32    89 haltere disc ML-DmD17-c3    55 eye-antennal disc ML-DmD11    69 antennal disc ML-DmD20-c5    53 mixed discs ML-DmD4-c1    33 CNS ML-DmBG1-c1    64 CNS ML-DmBG2-c2    50 tumorous blood cells mbn2    65 ovary fGS/OSS    172 ovary OSC    154 ovary OSS    118 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    71 Schneider line 2 Sg4    34 embryonic 1182-4H    78 embryonic GM2    84 embryonic Kc167    172 embryonic S1    163 embryonic S3    12 leg disc CME L1    51 wing disc CME-W2    37 wing disc ML-DmD8    31 wing disc ML-DmD9    91 wing disc ML-DmD16-c3    98 wing disc ML-DmD21    38 wing disc ML-DmD32    89 haltere disc ML-DmD17-c3    55 eye-antennal disc ML-DmD11    69 antennal disc ML-DmD20-c5    53 mixed discs ML-DmD4-c1    33 CNS ML-DmBG1-c1    64 CNS ML-DmBG2-c2    50 tumorous blood cells mbn2    65 ovary fGS/OSS    172 ovary OSC    154 ovary OSS    118 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (71) Schneider line 2 Sg4  (34) embryonic 1182-4H  (78) embryonic GM2  (84) embryonic Kc167  (172) embryonic S1  (163) embryonic S3    12 leg disc CME L1  (51) wing disc CME-W2  (37) wing disc ML-DmD8  31 wing disc ML-DmD9  (91) wing disc ML-DmD16-c3  (98) wing disc ML-DmD21  (38) wing disc ML-DmD32  (89) haltere disc ML-DmD17-c3  (55) eye-antennal disc ML-DmD11  (69) antennal disc ML-DmD20-c5  (53) mixed discs ML-DmD4-c1  (33) CNS ML-DmBG1-c1  (64) CNS ML-DmBG2-c2  (50) tumorous blood cells mbn2  (65) ovary fGS/OSS  (172) ovary OSC  (154) ovary OSS  (118) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    71 Schneider line 2 Sg4    34 embryonic 1182-4H    78 embryonic GM2    84 embryonic Kc167  (172) embryonic S1  (163) embryonic S3    12 leg disc CME L1    51 wing disc CME-W2    37 wing disc ML-DmD8    31 wing disc ML-DmD9    91 wing disc ML-DmD16-c3    98 wing disc ML-DmD21    38 wing disc ML-DmD32    89 haltere disc ML-DmD17-c3    55 eye-antennal disc ML-DmD11    69 antennal disc ML-DmD20-c5    53 mixed discs ML-DmD4-c1    33 CNS ML-DmBG1-c1    64 CNS ML-DmBG2-c2    50 tumorous blood cells mbn2    65 ovary fGS/OSS  (172) ovary OSC  (154) ovary OSS  118 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    71 Schneider line 2 Sg4    34 embryonic 1182-4H    78 embryonic GM2    84 embryonic Kc167    172 embryonic S1    163 embryonic S3    12 leg disc CME L1    51 wing disc CME-W2    37 wing disc ML-DmD8    31 wing disc ML-DmD9    91 wing disc ML-DmD16-c3    98 wing disc ML-DmD21    38 wing disc ML-DmD32    89 haltere disc ML-DmD17-c3    55 eye-antennal disc ML-DmD11    69 antennal disc ML-DmD20-c5    53 mixed discs ML-DmD4-c1    33 CNS ML-DmBG1-c1    64 CNS ML-DmBG2-c2    50 tumorous blood cells mbn2    65 ovary fGS/OSS    172 ovary OSC    154 ovary OSS    118 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    32 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    31 Cadmium 50 mM 48 hrs, 4-day adult    33 Cadmium 100 mM 48 hrs, 4-day adult    56 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    96 Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult    66 Ethanol 2.5% 3 hrs, larvae L3    46 Ethanol 5% 3 hrs, larvae L3    32 Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3    36 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    62 Caffeine 25 mg/ml 48 hrs, 4-day adult    41 Paraquat 5 mM 48 hrs, 4-day adult    48 Paraquat 10 mM 48 hrs, 4-day adult    49 Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (40) cold shock, 4-day adult  (32) heat shock, 4-day adult  (29) Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3  (31) Cadmium 50 mM 48 hrs, 4-day adult  (33) Cadmium 100 mM 48 hrs, 4-day adult  (56) Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult  (96) Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult  (66) Ethanol 2.5% 3 hrs, larvae L3  (46) Ethanol 5% 3 hrs, larvae L3  (32) Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3  (36) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (62) Caffeine 25 mg/ml 48 hrs, 4-day adult  (41) Paraquat 5 mM 48 hrs, 4-day adult  (48) Paraquat 10 mM 48 hrs, 4-day adult  (49) Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    32 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    31 Cadmium 50 mM 48 hrs, 4-day adult    33 Cadmium 100 mM 48 hrs, 4-day adult    56 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    96 Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult    66 Ethanol 2.5% 3 hrs, larvae L3    46 Ethanol 5% 3 hrs, larvae L3    32 Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3    36 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    62 Caffeine 25 mg/ml 48 hrs, 4-day adult    41 Paraquat 5 mM 48 hrs, 4-day adult    48 Paraquat 10 mM 48 hrs, 4-day adult    49 Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    32 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    31 Cadmium 50 mM 48 hrs, 4-day adult    33 Cadmium 100 mM 48 hrs, 4-day adult    56 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    96 Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult    66 Ethanol 2.5% 3 hrs, larvae L3    46 Ethanol 5% 3 hrs, larvae L3    32 Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3    36 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    62 Caffeine 25 mg/ml 48 hrs, 4-day adult    41 Paraquat 5 mM 48 hrs, 4-day adult    48 Paraquat 10 mM 48 hrs, 4-day adult    49 Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    32 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    31 Cadmium 50 mM 48 hrs, 4-day adult    33 Cadmium 100 mM 48 hrs, 4-day adult    56 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    96 Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult    66 Ethanol 2.5% 3 hrs, larvae L3    46 Ethanol 5% 3 hrs, larvae L3    32 Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3    36 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    62 Caffeine 25 mg/ml 48 hrs, 4-day adult    41 Paraquat 5 mM 48 hrs, 4-day adult    48 Paraquat 10 mM 48 hrs, 4-day adult    49 Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (40) cold shock, 4-day adult  32 heat shock, 4-day adult  29 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3  31 Cadmium 50 mM 48 hrs, 4-day adult  (33) Cadmium 100 mM 48 hrs, 4-day adult  (56) Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult  (96) Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult  (66) Ethanol 2.5% 3 hrs, larvae L3  (46) Ethanol 5% 3 hrs, larvae L3  32 Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3  (36) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (62) Caffeine 25 mg/ml 48 hrs, 4-day adult  (41) Paraquat 5 mM 48 hrs, 4-day adult  (48) Paraquat 10 mM 48 hrs, 4-day adult  (49) Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    32 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    31 Cadmium 50 mM 48 hrs, 4-day adult    33 Cadmium 100 mM 48 hrs, 4-day adult    56 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    96 Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult    66 Ethanol 2.5% 3 hrs, larvae L3    46 Ethanol 5% 3 hrs, larvae L3    32 Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3    36 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    62 Caffeine 25 mg/ml 48 hrs, 4-day adult    41 Paraquat 5 mM 48 hrs, 4-day adult    48 Paraquat 10 mM 48 hrs, 4-day adult    49 Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    40 cold shock, 4-day adult    32 heat shock, 4-day adult    29 Cadmium 50 mM 6 hrs, larvae L3    16 Cadmium 50 mM 12 hrs, larvae L3    31 Cadmium 50 mM 48 hrs, 4-day adult    33 Cadmium 100 mM 48 hrs, 4-day adult    56 Copper 0.5 mM 12 hrs, larvae L3    19 Copper 15 mM 48 hrs, 4-day adult    96 Zinc 5 mM 12 hrs, larvae L3    23 Zinc 4.5 mM 48 hrs, 4-day adult    66 Ethanol 2.5% 3 hrs, larvae L3    46 Ethanol 5% 3 hrs, larvae L3    32 Ethanol 10% 3 hrs, larvae L3    18 Caffeine 1.5 mg/ml 4 hrs, larvae L3    36 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    62 Caffeine 25 mg/ml 48 hrs, 4-day adult    41 Paraquat 5 mM 48 hrs, 4-day adult    48 Paraquat 10 mM 48 hrs, 4-day adult    49 Rotenone 2 μg 12 hrs, larvae L3    15 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_27 mE1_20_mRNA_expression_cluster_02
External Data & Images
Linkouts	BDGP expression data • GH16240 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0020304 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3365-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for drongo Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele partially lethal - majority die | pupal stage, with Scer\GAL4pnr-MD237 drongoGD10950 Phenotype manifest in Allele
Classical Alleles ( 6 )
For All Classical Alleles Show
Allele of drongo Class Mutagen Stocks Known lesion drongo5-HA-1013 1 -- drongoBG01320 P-element activity 1 -- drongoc02371 piggyBac transposase 1 -- drongoCB-0901-3 1 -- drongoMI03906 1 -- drongoc05389 piggyBac transposase 0 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of drongo Class Mutagen Stocks Known lesion drongoGD10950 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes drongoHMS01874 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes drongoKK107600 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes drongoNIG.3365R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel6003 (Ryder, 2004.4.26) Df(2L)Exel7005 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10950} NA P{KK107600} NA P{NIG.3365R} NA P{TRiP.HMS01874} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}drongoMI03906 NA P{CaryP}attP29 NA P{GT1}drongoBG01320 NA P{RS3}drongoCB-0901-3 NA P{RS5}drongo5-HA-1013 NA P{UAS-LUC.M}attP29 NA P{wHy}CG4291DG30512 NA PBac{PB}drongoc02371 NA PBac{PB}drongoc05389 NA
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
	There is no information supporting a cellular component term for this gene. (Based on a review of available data on: 2013-03-21)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
ARF GTPase activator activity inferred from electronic annotation with InterPro:IPR001164 (FlyBase Curators et al., 2004-) zinc ion binding inferred from electronic annotation with InterPro:IPR001164 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
regulation of ARF GTPase activity inferred from electronic annotation with InterPro:IPR001164 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
drongo - Arp2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) drongo - Arpc1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) drongo - Arpc2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) drongo - Arpc3A anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) drongo - Arpc4 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) drongo - CG4278 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) drongo - Trap1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions drongo allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 59517 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0020304 DroID - A comprehensive database of gene and protein interactions. • FBgn0020304 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33263
Orthologs
OrthoDB Orthologs (41) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6WSWW7 Dipteran inclusive ortholog search EOG6X3H8Q Insect inclusive ortholog search EOG6QFV8V Arthropod inclusive ortholog search EOG6FBG8G Metazoa inclusive ortholog search EOG686N5P
Orthologs in Drosophila Species (EOG6WSWW7)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\drongo     Drosophila simulans   Dsim\GD22938 Y   Drosophila sechellia   Dsec\GM16640     Drosophila erecta   Dere\GG24625 Y   Drosophila yakuba   Dyak\GE15887 Y   Drosophila ananassae   Dana\GF14821 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA17408 Y   Drosophila persimilis   Dper\GL18630 Y   Drosophila willistoni   Dwil\GK24619 Y   Drosophila virilis   Dvir\GJ19635 Y   Drosophila mojavensis   Dmoj\GI18010 Y   Drosophila grimshawi   Dgri\GH10492 Y
Orthologs in non-Drosophila Dipterans (EOG6X3H8Q)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL004129   Anopheles gambiae Malaria mosquito  Agam\AGAP010189   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ010924
Orthologs in non-Dipteran Insects (EOG6QFV8V)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\drongo   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG008083   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH18269   Atta cephalotes Leafcutter ant  Acep\ACEP19163   Camponotus floridanus Florida carpenter ant  Cflo\CFLO18455   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL19973   Linepithema humile Argentine ant  Lhum\LH13214   Pogonomyrmex barbatus Red harvester ant  Pbar\PB19757   Solenopsis invicta Red fire ant  Sinv\SINV20997   Acyrthosiphon pisum Pea aphid  Apim\ACYPI001110   Pediculus humanus Human body louse  Phum\PHUM137830   Tribolium castaneum Red flour beetle  Tcas\drongo
Orthologs in non-Insect Arthropods (EOG6FBG8G)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_44842   Ixodes scapularis Deer tick  Isca\ISCW009410
Orthologs in non-Arthropod Metazoa (EOG686N5P)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_006651gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_026445gn   Danio rerio Zebrafish  Drer\ENSDARG00000069334   Danio rerio Zebrafish  Drer\agfg1b   Xenopus tropicalis Western clawed frog  Xtro\agfg1   Gallus gallus Domestic chicken  Ggal\AGFG1   Mus musculus House mouse  Mmus\Agfg2   Mus musculus House mouse  Mmus\Agfg1   Rattus norvegicus Norway rat  Rnor\Agfg2   Rattus norvegicus Norway rat  Rnor\Agfg1   Homo sapiens Human  Hsap\AGFG2   Homo sapiens Human  Hsap\AGFG1
Human Orthologs (2)
Gene OMIM HGNC Hsap\AGFG2     Hsap\AGFG1
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD22938 Drosophila erecta Dere\GG24625 Drosophila yakuba Dyak\GE15887 Drosophila ananassae Dana\GF14821 Drosophila pseudoobscura pseudoobscura Dpse\GA17408 Drosophila persimilis Dper\GL18630 Drosophila willistoni Dwil\GK24619 Drosophila virilis Dvir\GJ19635 Drosophila mojavensis Dmoj\GI18010 Drosophila grimshawi Dgri\GH10492
Stocks & Reagents
Stocks Listed in FlyBase ( 8 )
Bloomington	12539 w1118; P{GT1}drongoBG01320 36390 y1 w*; Mi{MIC}drongoMI03906 38960 y1 sc* v1; P{TRiP.HMS01874}attP40
Harvard	- PBac{PB}drongoc02371
Kyoto	123365 w1118; P{RS3}drongoCB-0901-3 125008 w1118; P{RS5}drongo5-HA-1013
VDRC	v43763 w1118; P{GD10950}v43763 v43764 w1118; P{GD10950}v43764
Genomic Clones ( 1 )
	BACR16I01 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 97 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT07355 AT25538 GH16240
Other clones	DPiM_GH16240 MIP02612
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT04779 AT16806 AT30589 GH04964 GH12089 GH26047 LD39584 LD45537 LD47220 LD47243 LP02651 RE02531 RE03423 RE06310 RE35923 RE41936 RE42080 RE48657 RE51457 RE57207 RE58129 RE60238 RE63067 RE69030 RE69065 RE72037 RE72086 RH10469 RH11071 RH14976 RH41590 RH42779 RH44782 RH47837 RH49644 RH51922 RH57509 RH58445 RH61818 RH62575 RH63615 RH68835 RH70432 RH71891 RH73936
Other clones	81689 174870 283716 EK088348 EK111914 EK148002 EK159861 EK198503 EK208020 EK210622 EK215229 EK253446 EK258501 EK271237 EK275839 EP02427 EP11951 ESG016a.E21_A12 ESG017d.E21_H05 ESG018b.E21.1_B04 ESG0116c.B21_B10 RP004204936 RP004209100 RP004214719 RP004236905 RP004237737 RP004242316 RP004244909 RP004253344 RP004254254 RP004257400 RP004258425 RP004260873 RP004276009 RP004328501 RP004355501 RP004423591 RP004425606 RP004460313 RP004460736 RP004470457 RP004511064 RP004522343 RP004536119 RP004549236 RP004550288 RP004555514
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0020304 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33263
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: drongo CG3365 (Li, 1999.11)
Source for database merge of	Source for merge of: drongo BEST:LD45537 (Rana, 2004.7.8)
Additional comments
Other Comments
	Area matching Drosophila Drongo gene. (Davies, 2001.3.15) Isolated via an enhancer trap line expressed in the neurogenic ectoderm. (Pritchard et al., 1997) drongo is also expressed during oogenesis. (Pritchard et al., 1997)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_057891 NM_164392 NM_001144291 NM_001169377 NM_001169378 RefSeq (Proteins) • NP_477239 NP_722660 NP_001137763 NP_001162848 NP_001162849 DDBJ / EMBL / GenBank • AAC71035 AAF51447 AAF51448 AAM50180 AAN10487 AC004546 ACL82970 ACL82971 ACZ94140 ACZ94141 AF097364 AI293136 AW940615 AX094705 AY119526 AZ933404 CZ467896 CZ469934 Entrez Gene - A searchable database of RefSeq genes. • 33263 UniProtKB/TrEMBL • B7Z004 B7Z005 E1JHR0 E1JHR1 O96639 Q8MRM4 Q9VPU2 Q9VPU3
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Arf GTPase activating protein (IPR001164) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GH16240
Linkouts
	BioGRID - A database of protein and genetic interactions • 59517 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0020304 DroID - A comprehensive database of gene and protein interactions. • FBgn0020304 DRSC - Results from RNAi screens. • FBgn0020304 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0020304 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3365-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0020304 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33263 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33263 modMine - Data generated by the modENCODE project. • FBgn0020304
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	CG3365 (Keleman et al., 2009.8.5, Sabri et al., 2007, Ni et al., 2010.12.1) drongo (Panaro et al., 2011, Markstein et al., 2008, Ostrin et al., 2006, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym	drongo (Pritchard et al., 1997, Ostrin et al., 2006)
Secondary FlyBase IDs
References ( 37 )
Generate a list of	All references relating to this gene ( 37 )
List References by type	Research paper  ( 4 ) Supplementary material  ( 5 ) Review  ( 1 ) Personal communication to FlyBase  ( 14 ) Abstract  ( 2 ) FlyBase analysis  ( 4 ) Stock list  ( 1 ) Curated genome annotation  ( 2 ) Patent  ( 1 ) DNA/RNA sequence record  ( 2 ) Website  ( 1 )
Recent research papers ( 1 )
	Panaro et al., 2011, Immunopharmacol. Immunotoxicol. 33(1): 111--123 Organization patterns of the AGFG genes: an evolutionary study. [FBrf0212928] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...