bxd
produces non-coding RNA that may mediate or counteract epigenetic silencing - bxd RNA mediates recruitment of Ash1 to stimulates gene expression
Please see the JBrowse view of Dmel\lncRNA:bxd for information on other features
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Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model based on GenBank accessions for bxd and FBrf0046282
Gene model reviewed during 5.54
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\lncRNA:bxd using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
JBrowse - Visual display of RNA-Seq signals
View Dmel\lncRNA:bxd in JBrowsePlease Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
dsRNA made from templates generated with primers directed against this gene has no effect on Ubx expression.
dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
New annotation (CR31273) in release 3 of the genome annotation.
The transcription unit that produces the noncoding bxd transcript has been identified.
Non-coding RNA regulating Ubx.
The "CG31275" annotation (FBgn0051275) is located within an intron of "bxd" (FBgn0020556). "CG31275" corresponds to the transcript in GenBank accession M27999 described as the "late bithoraxoid transcript" in FBrf0046282.
Source for identity of: lncRNA:bxd bxd