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Gene Dmel\Lcp65Ac

General Information
Symbol	Dmel\Lcp65Ac	Species	D. melanogaster
Name	Lcp65Ac	Annotation symbol	CG6956
Feature type	protein_coding_gene	FlyBase ID	FBgn0020642
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	65A6-65A6	Sequence location	3L:6,137,919..6,138,493 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Lcp65Ac is referred to in FlyBase by the symbol Dmel\Lcp65Ac (CG6956, FBgn0020642). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: structural constituent of chitin-based cuticle; structural constituent of chitin-based larval cuticle. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Insect cuticle protein. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed within 12-24 hour embryonic stages, at stages throughout the larval period. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval hindgut, larval trachea. Comments on Affy2 ProbeSet: ProbeSet 1632693_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Lcp65Ac. Gene sequence location is 3L:6137919..6138493.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 65A6-65A6   Limits computationally determined from genome sequence between P{PZ}loj04026 and P{PZ}l(3)0209402094
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Lcp65Ac for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Lcp65Ac-RA FBtr0076991  NM_057931   505   109
Additional Transcript Data & Comments
Reported size (kB)	0.492 (longest cDNA) (Charles et al., 1997)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Lcp65Ac-PA   FBpp0076700   11.7   109   4.04     NP_477279   AAF50687
Additional Polypeptide Data & Comments
Reported size (kDa)	109 (aa) (Charles et al., 1997)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Insect cuticle protein (IPR000618)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014296 AAF50687   AC004357   AC004767   AY071303 AAL48925   BI236933   BI368565   CO178289   CO291722   EC074976   EC207225   GH748156   GH749732   GH751251   GH751895   GH753116   GH754103   GH756689   GH758340   GH758850   GH770267   GH770547   GH771325   GH772757   GH773310   GH773778   GH775880   GH778657   GH778921   GH780555   GH782355   GH783023   GH784265   GH786929   GH787510   GH787512   GH788216   GH789048   GH789182   GH792272   GH792515   GH793025   GH794742   GH794991   GH795493   GH796413   GH796962   GH797874   GH798885   GH799184   GH799501   GH800773   GH801242   GH801710   GH803943   GH806376   GH806894   GH807660   GH809956   GH810530   GH812560   GH813892   GH814454   GH814645   GH816091   GH818167   GH819152   GH820568   GH820570   GH820585   GH822410   GH824287   GH824748   GH829205   GH830407   GH830749   GH833926   GH836433   GH837074   GH837189   GH837730   GH838545   GH838839   GH839058   GH840228   GH842412   GH843782   GH844868   GH846038   GH847535   GH848304   GH848849   GH850617   GH850742   GH853932   GH854327   GH856428   GH858446   GH860536   GH860878   GH862165   GH863619   GH865176   GH867683   GH869798   GH871691   GH873820   GH874470   GH877077   GH877615   GH884185   GH885469   GH885476   GH885673   GH889103   GH890278   GH890783   GH892367   GH893407   GH897640   GH898868   GH902560   GH902720   GH906296   GH910693   GH910871   GH917368   GH918240   GH918596   GH922722   GH923219   GH924311   GH925171   GH928114   GH928252   GH928433   GH930684   GH933825   GH934698   GH935026   GH942339   GH942485   GH942545   GH942586   GH942598   U84745 AAB88064   U84755 AAB48462
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	P92181
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 13 -- 16   embryonic esophagus   (Fisher et al., 2012) embryonic head epidermis   (Fisher et al., 2012) northern blot Stage Tissue/Position (including subcellular localization) Reference embryonic stage     (Charles et al., 1998) larval stage     (Charles et al., 1998) prepupal stage P4 -- pupal stage P5(i)     (Charles et al., 1998) Comment:reference states 7-13 hr APF
Additional Descriptive Data
	Lcp65Ac transcript is expressed at significant levels during the synthesis of all larval cuticles. Expression is first detected in the embryo during the synthesis of the first instar larval cuticle, declines after ecdysis, and increases again during the synthesis of the cuticles for the second and third larval instars. Levels decline again between 12-18 hr after ecdysis to the third larval instar. The transcript is expressed transiently at 7-13 hr after pupariation, during pupal cuticle deposition. (Charles et al., 1998)
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval hindgut, larval trachea. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    6.575 Larval Midgut    61 Larval Hindgut    266.2 Larval Malpighian Tubules    5.4 Larval Fat Body    2.6 Larval Salivary Gland    11.6 Larval Trachea    145.575 Larval Carcass    919.45 Adult Head    28.3 Adult Eye    4.3 Adult Brain    4 Adult Thoracic-Abdominal Ganglion    5.1 Adult Crop    8.1 Adult Midgut    7.2 Adult Hindgut    5.3 Adult Malpighian Tubules    6.5 Adult Fat Body    9.4 Adult Salivary Gland    13.2 Adult Heart    3.2 Adult VirginFemale Spermatheca    6.4 Adult InseminatedFemale Spermatheca    7.6 Adult Ovary    2.4 Adult Testis    2.2 Adult Male Accessory Gland    6.3 Adult Carcass    7.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    6.575 Larval Midgut    61 Larval Hindgut    266.2 Larval Malpighian Tubules    5.4 Larval Fat Body    2.6 Larval Salivary Gland    11.6 Larval Trachea    145.575 Larval Carcass  (919.45) Adult Head    28.3 Adult Eye    4.3 Adult Brain    4 Adult Thoracic-Abdominal Ganglion    5.1 Adult Crop    8.1 Adult Midgut    7.2 Adult Hindgut    5.3 Adult Malpighian Tubules    6.5 Adult Fat Body    9.4 Adult Salivary Gland    13.2 Adult Heart    3.2 Adult VirginFemale Spermatheca    6.4 Adult InseminatedFemale Spermatheca    7.6 Adult Ovary    2.4 Adult Testis    2.2 Adult Male Accessory Gland    6.3 Adult Carcass    7.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    6.575 Larval Midgut    61 Larval Hindgut    266.2 Larval Malpighian Tubules    5.4 Larval Fat Body    2.6 Larval Salivary Gland    11.6 Larval Trachea    145.575 Larval Carcass    919.45 Adult Head    28.3 Adult Eye    4.3 Adult Brain    4 Adult Thoracic-Abdominal Ganglion    5.1 Adult Crop    8.1 Adult Midgut    7.2 Adult Hindgut    5.3 Adult Malpighian Tubules    6.5 Adult Fat Body    9.4 Adult Salivary Gland    13.2 Adult Heart    3.2 Adult VirginFemale Spermatheca    6.4 Adult InseminatedFemale Spermatheca    7.6 Adult Ovary    2.4 Adult Testis    2.2 Adult Male Accessory Gland    6.3 Adult Carcass    7.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    6.575 Larval Midgut    61 Larval Hindgut    266.2 Larval Malpighian Tubules    5.4 Larval Fat Body    2.6 Larval Salivary Gland    11.6 Larval Trachea    145.575 Larval Carcass    919.45 Adult Head    28.3 Adult Eye    4.3 Adult Brain    4 Adult Thoracic-Abdominal Ganglion    5.1 Adult Crop    8.1 Adult Midgut    7.2 Adult Hindgut    5.3 Adult Malpighian Tubules    6.5 Adult Fat Body    9.4 Adult Salivary Gland    13.2 Adult Heart    3.2 Adult VirginFemale Spermatheca    6.4 Adult InseminatedFemale Spermatheca    7.6 Adult Ovary    2.4 Adult Testis    2.2 Adult Male Accessory Gland    6.3 Adult Carcass    7.6 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    6.575 Larval Midgut    61 Larval Hindgut    266.2 Larval Malpighian Tubules    5.4 Larval Fat Body    2.6 Larval Salivary Gland    11.6 Larval Trachea    145.575 Larval Carcass    919.45 Adult Head    28.3 Adult Eye    4.3 Adult Brain    4 Adult Thoracic-Abdominal Ganglion    5.1 Adult Crop    8.1 Adult Midgut    7.2 Adult Hindgut    5.3 Adult Malpighian Tubules    6.5 Adult Fat Body    9.4 Adult Salivary Gland    13.2 Adult Heart    3.2 Adult VirginFemale Spermatheca    6.4 Adult InseminatedFemale Spermatheca    7.6 Adult Ovary    2.4 Adult Testis    2.2 Adult Male Accessory Gland    6.3 Adult Carcass    7.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    6.575 Larval Midgut    61 Larval Hindgut    266.2 Larval Malpighian Tubules    5.4 Larval Fat Body    2.6 Larval Salivary Gland    11.6 Larval Trachea    145.575 Larval Carcass  (919.45) Adult Head    28.3 Adult Eye    4.3 Adult Brain    4 Adult Thoracic-Abdominal Ganglion    5.1 Adult Crop    8.1 Adult Midgut    7.2 Adult Hindgut    5.3 Adult Malpighian Tubules    6.5 Adult Fat Body    9.4 Adult Salivary Gland    13.2 Adult Heart    3.2 Adult VirginFemale Spermatheca    6.4 Adult InseminatedFemale Spermatheca    7.6 Adult Ovary    2.4 Adult Testis    2.2 Adult Male Accessory Gland    6.3 Adult Carcass    7.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    6.575 Larval Midgut    61 Larval Hindgut    266.2 Larval Malpighian Tubules    5.4 Larval Fat Body    2.6 Larval Salivary Gland    11.6 Larval Trachea    145.575 Larval Carcass    919.45 Adult Head    28.3 Adult Eye    4.3 Adult Brain    4 Adult Thoracic-Abdominal Ganglion    5.1 Adult Crop    8.1 Adult Midgut    7.2 Adult Hindgut    5.3 Adult Malpighian Tubules    6.5 Adult Fat Body    9.4 Adult Salivary Gland    13.2 Adult Heart    3.2 Adult VirginFemale Spermatheca    6.4 Adult InseminatedFemale Spermatheca    7.6 Adult Ovary    2.4 Adult Testis    2.2 Adult Male Accessory Gland    6.3 Adult Carcass    7.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    6.575 Larval Midgut    61 Larval Hindgut    266.2 Larval Malpighian Tubules    5.4 Larval Fat Body    2.6 Larval Salivary Gland    11.6 Larval Trachea    145.575 Larval Carcass    919.45 Adult Head    28.3 Adult Eye    4.3 Adult Brain    4 Adult Thoracic-Abdominal Ganglion    5.1 Adult Crop    8.1 Adult Midgut    7.2 Adult Hindgut    5.3 Adult Malpighian Tubules    6.5 Adult Fat Body    9.4 Adult Salivary Gland    13.2 Adult Heart    3.2 Adult VirginFemale Spermatheca    6.4 Adult InseminatedFemale Spermatheca    7.6 Adult Ovary    2.4 Adult Testis    2.2 Adult Male Accessory Gland    6.3 Adult Carcass    7.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    28.3   NA  Eye    4.3   NA  Brain    4   6.575  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    5.1   NA  Crop    8.1   61  Midgut    7.2   266.2  Hindgut    5.3   5.4  Malpighian Tubules    6.5   2.6  Fat Body    9.4   no informative data  Salivary Gland    no informative data   NA  Heart    3.2   145.575  Trachea    NA   NA  VirginFemale Spermatheca    6.4   NA  InseminatedFemale Spermatheca    7.6   NA  Ovary    2.4   NA  Testis    2.2   NA  Male Accessory Gland    6.3   919.45  Carcass    7.6 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    9 central nervous system, pupae P8    1 head, virgin 1-day female    1 head, virgin 4-day female    1 head, virgin 20-day female    0 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    79 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    9 central nervous system, pupae P8    1 head, virgin 1-day female    1 head, virgin 4-day female    1 head, virgin 20-day female    0 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering  (79) carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    9 central nervous system, pupae P8    1 head, virgin 1-day female    1 head, virgin 4-day female    1 head, virgin 20-day female    0 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    79 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    9 central nervous system, pupae P8    1 head, virgin 1-day female    1 head, virgin 4-day female    1 head, virgin 20-day female    0 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    79 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    9 central nervous system, pupae P8    1 head, virgin 1-day female    1 head, virgin 4-day female    1 head, virgin 20-day female    0 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    79 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    9 central nervous system, pupae P8    1 head, virgin 1-day female    1 head, virgin 4-day female    1 head, virgin 20-day female    0 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering  (79) carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    9 central nervous system, pupae P8    1 head, virgin 1-day female    1 head, virgin 4-day female    1 head, virgin 20-day female    0 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    79 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    9 central nervous system, pupae P8    1 head, virgin 1-day female    1 head, virgin 4-day female    1 head, virgin 20-day female    0 head, mated 1-day female    1 head, mated 4-day female    1 head, mated 20-day female    1 head, mated 1-day male    2 head, mated 4-day male    2 head, mated 20-day male    1 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    0 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    79 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    0 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of very low expression. Peak expression observed within 12-24 hour embryonic stages, at stages throughout the larval period. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    1 embryo 14-16hr    16 embryo 16-18hr    171 embryo 18-20hr    692 embryo 20-22hr    629 embryo 22-24hr    568 larva L1    332 larva L2    65 larva L3 12hr old    1070 larva L3 puffstage 1-2    208 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    23 white prepupae new    1 white prepupae 12hr    24 white prepupae 24hr    1 pupae 2d postWPP    3 pupae 3d postWPP    49 pupae 4d postWPP    5 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    1 embryo 14-16hr    16 embryo 16-18hr  (171) embryo 18-20hr  (692) embryo 20-22hr  (629) embryo 22-24hr  (568) larva L1  (332) larva L2  (65) larva L3 12hr old  (1070) larva L3 puffstage 1-2  (208) larva L3 puffstage 3-6  (73) larva L3 puffstage 7-9    23 white prepupae new    1 white prepupae 12hr    24 white prepupae 24hr    1 pupae 2d postWPP    3 pupae 3d postWPP  (49) pupae 4d postWPP    5 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    1 embryo 14-16hr    16 embryo 16-18hr  (171) embryo 18-20hr  (692) embryo 20-22hr  (629) embryo 22-24hr  (568) larva L1  (332) larva L2    65 larva L3 12hr old  (1070) larva L3 puffstage 1-2  (208) larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    23 white prepupae new    1 white prepupae 12hr    24 white prepupae 24hr    1 pupae 2d postWPP    3 pupae 3d postWPP    49 pupae 4d postWPP    5 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    1 embryo 14-16hr    16 embryo 16-18hr    171 embryo 18-20hr    692 embryo 20-22hr    629 embryo 22-24hr    568 larva L1    332 larva L2    65 larva L3 12hr old    1070 larva L3 puffstage 1-2    208 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    23 white prepupae new    1 white prepupae 12hr    24 white prepupae 24hr    1 pupae 2d postWPP    3 pupae 3d postWPP    49 pupae 4d postWPP    5 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    1 embryo 14-16hr    16 embryo 16-18hr    171 embryo 18-20hr    692 embryo 20-22hr    629 embryo 22-24hr    568 larva L1    332 larva L2    65 larva L3 12hr old    1070 larva L3 puffstage 1-2    208 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    23 white prepupae new    1 white prepupae 12hr    24 white prepupae 24hr    1 pupae 2d postWPP    3 pupae 3d postWPP    49 pupae 4d postWPP    5 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    1 embryo 14-16hr    16 embryo 16-18hr  (171) embryo 18-20hr  (692) embryo 20-22hr  (629) embryo 22-24hr  (568) larva L1  (332) larva L2  (65) larva L3 12hr old  (1070) larva L3 puffstage 1-2  (208) larva L3 puffstage 3-6  (73) larva L3 puffstage 7-9    23 white prepupae new    1 white prepupae 12hr    24 white prepupae 24hr    1 pupae 2d postWPP    3 pupae 3d postWPP  (49) pupae 4d postWPP    5 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    1 embryo 14-16hr    16 embryo 16-18hr  (171) embryo 18-20hr  (692) embryo 20-22hr  (629) embryo 22-24hr  (568) larva L1  (332) larva L2    65 larva L3 12hr old  (1070) larva L3 puffstage 1-2  (208) larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    23 white prepupae new    1 white prepupae 12hr    24 white prepupae 24hr    1 pupae 2d postWPP    3 pupae 3d postWPP    49 pupae 4d postWPP    5 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    1 embryo 14-16hr    16 embryo 16-18hr    171 embryo 18-20hr    692 embryo 20-22hr    629 embryo 22-24hr    568 larva L1    332 larva L2    65 larva L3 12hr old    1070 larva L3 puffstage 1-2    208 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    23 white prepupae new    1 white prepupae 12hr    24 white prepupae 24hr    1 pupae 2d postWPP    3 pupae 3d postWPP    49 pupae 4d postWPP    5 adult male 01day    1 adult male 05day    0 adult male 30day    0 adult female 01day    1 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    5 heat shock, 4-day adult    277 Cadmium 50 mM 6 hrs, larvae L3    689 Cadmium 50 mM 12 hrs, larvae L3    214 Cadmium 50 mM 48 hrs, 4-day adult    369 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    467 Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3    378 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    422 Ethanol 10% 3 hrs, larvae L3    546 Caffeine 1.5 mg/ml 4 hrs, larvae L3    252 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    28 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    387 Rotenone 8 μg 12 hrs, larvae L3    803 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    5 heat shock, 4-day adult  (277) Cadmium 50 mM 6 hrs, larvae L3  (689) Cadmium 50 mM 12 hrs, larvae L3  (214) Cadmium 50 mM 48 hrs, 4-day adult  (369) Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3  (467) Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3  (378) Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3  (422) Ethanol 10% 3 hrs, larvae L3  (546) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (252) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult  (28) Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3  (387) Rotenone 8 μg 12 hrs, larvae L3  (803) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    5 heat shock, 4-day adult  (277) Cadmium 50 mM 6 hrs, larvae L3  (689) Cadmium 50 mM 12 hrs, larvae L3  (214) Cadmium 50 mM 48 hrs, 4-day adult  (369) Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3  (467) Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3  (378) Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3  (422) Ethanol 10% 3 hrs, larvae L3  (546) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (252) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    28 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3  (387) Rotenone 8 μg 12 hrs, larvae L3  (803) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    5 heat shock, 4-day adult    277 Cadmium 50 mM 6 hrs, larvae L3    689 Cadmium 50 mM 12 hrs, larvae L3    214 Cadmium 50 mM 48 hrs, 4-day adult    369 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    467 Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3    378 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    422 Ethanol 10% 3 hrs, larvae L3    546 Caffeine 1.5 mg/ml 4 hrs, larvae L3    252 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    28 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    387 Rotenone 8 μg 12 hrs, larvae L3    803 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    5 heat shock, 4-day adult    277 Cadmium 50 mM 6 hrs, larvae L3    689 Cadmium 50 mM 12 hrs, larvae L3    214 Cadmium 50 mM 48 hrs, 4-day adult    369 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    467 Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3    378 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    422 Ethanol 10% 3 hrs, larvae L3    546 Caffeine 1.5 mg/ml 4 hrs, larvae L3    252 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    28 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    387 Rotenone 8 μg 12 hrs, larvae L3    803 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    5 heat shock, 4-day adult  (277) Cadmium 50 mM 6 hrs, larvae L3  (689) Cadmium 50 mM 12 hrs, larvae L3  (214) Cadmium 50 mM 48 hrs, 4-day adult  (369) Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3  (467) Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3  (378) Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3  (422) Ethanol 10% 3 hrs, larvae L3  (546) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (252) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult  28 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3  (387) Rotenone 8 μg 12 hrs, larvae L3  (803) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    5 heat shock, 4-day adult  (277) Cadmium 50 mM 6 hrs, larvae L3  (689) Cadmium 50 mM 12 hrs, larvae L3  (214) Cadmium 50 mM 48 hrs, 4-day adult  (369) Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3  (467) Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3  (378) Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3  (422) Ethanol 10% 3 hrs, larvae L3  (546) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (252) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    28 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3  (387) Rotenone 8 μg 12 hrs, larvae L3  (803) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    5 heat shock, 4-day adult    277 Cadmium 50 mM 6 hrs, larvae L3    689 Cadmium 50 mM 12 hrs, larvae L3    214 Cadmium 50 mM 48 hrs, 4-day adult    369 Cadmium 100 mM 48 hrs, 4-day adult    2 Copper 0.5 mM 12 hrs, larvae L3    467 Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3    378 Zinc 4.5 mM 48 hrs, 4-day adult    17 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    422 Ethanol 10% 3 hrs, larvae L3    546 Caffeine 1.5 mg/ml 4 hrs, larvae L3    252 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    28 Paraquat 5 mM 48 hrs, 4-day adult    7 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    387 Rotenone 8 μg 12 hrs, larvae L3    803 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_32
External Data & Images
Linkouts	BDGP expression data • RE33063 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0020642 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6956-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Lcp65Ac Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele partially lethal - majority die | pupal stage, with Scer\GAL4pnr-MD237 Lcp65AcGD509 viable, with Scer\GAL4pnr-MD237 Lcp65AcGD15410 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Lcp65Ac Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Lcp65Ac Class Mutagen Stocks Known lesion Lcp65AcGD15410 in vitro construct - RNAi in vitro construct - regulatory fusion 3 Yes Lcp65AcGD509 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Lcp65AcKK112424 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel8101 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD509} NA P{GD15410} NA P{KK112424} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
structural constituent of chitin-based cuticle inferred from sequence or structural similarity with InterPro:IPR000618 (Willis, 2007.1.3) inferred from sequence or structural similarity with Pfam:PF00379 (Willis, 2007.1.3) structural constituent of chitin-based larval cuticle inferred from sequence or structural similarity (Charles et al., 1997) inferred from sequence or structural similarity with EMBL:AF026266 (FlyBase, 1992-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Lcp65Ac allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 64161 DroID - A comprehensive database of gene and protein interactions. • FBgn0020642 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38708
Orthologs
OrthoDB Orthologs (238) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6Q85J9 Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search EOG6KKX13 Arthropod inclusive ortholog search EOG63R24R Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6Q85J9)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Lcp65Ac     Drosophila simulans   Dsim\GD13939 Y   Drosophila sechellia   Dsec\GM14760 Y   Drosophila sechellia   Dsec\GM19678     Drosophila erecta   Dere\GG15326     Drosophila erecta   Dere\GG14079     Drosophila ananassae   Dana\GF23521 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA19982 Y   Drosophila persimilis   Dper\GL15557 Y   Drosophila willistoni   Dwil\GK17269 Y   Drosophila virilis   Dvir\GJ12740 Y   Drosophila mojavensis   Dmoj\GI12618     Drosophila grimshawi   Dgri\GH15836
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (EOG6KKX13)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB47906 Y Apis mellifera Western honey bee  Amel\LOC724649 Y Apis mellifera Western honey bee  Amel\CPR12 Y Apis mellifera Western honey bee  Amel\GB46298 Y Apis mellifera Western honey bee  Amel\GB52161 Y Apis mellifera Western honey bee  Amel\CPR13 Y Apis mellifera Western honey bee  Amel\GB47903 Y Apis mellifera Western honey bee  Amel\GB42612 Y Apis mellifera Western honey bee  Amel\GB43670 Y Apis mellifera Western honey bee  Amel\GB46297 Y Apis mellifera Western honey bee  Amel\GB47902 Y Apis mellifera Western honey bee  Amel\GB46312 Y Apis mellifera Western honey bee  Amel\GB46299 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006503 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006859 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG005393 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006863 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG013411 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG013416 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006864 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG010389 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG010007 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006867 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG016022 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG013414 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG013417 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG007522 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006861 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG010008 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006862 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG013413 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH22753 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH22751 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH17027 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH17029 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH21414 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH19798 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH22756 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH17028 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH22755 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH21415 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH21416 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH22752 Y Atta cephalotes Leafcutter ant  Acep\ACEP25267 Y Atta cephalotes Leafcutter ant  Acep\ACEP27437 Y Atta cephalotes Leafcutter ant  Acep\ACEP24251 Y Atta cephalotes Leafcutter ant  Acep\ACEP17449 Y Atta cephalotes Leafcutter ant  Acep\ACEP27431 Y Atta cephalotes Leafcutter ant  Acep\ACEP25266 Y Atta cephalotes Leafcutter ant  Acep\ACEP24250 Y Atta cephalotes Leafcutter ant  Acep\ACEP27444 Y Atta cephalotes Leafcutter ant  Acep\ACEP27432 Y Atta cephalotes Leafcutter ant  Acep\ACEP25277 Y Atta cephalotes Leafcutter ant  Acep\ACEP24236 Y Atta cephalotes Leafcutter ant  Acep\ACEP25265 Y Atta cephalotes Leafcutter ant  Acep\ACEP27427 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO21033 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO14804 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO21024 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO21020 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO20940 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO15374 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO20939 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO21032 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO21025 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO20958 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO21019 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO21021 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO14803 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO14802 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL21887 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL21889 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL20594 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL20587 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL19362 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL20586 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL19363 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL20593 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL20772 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL19364 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL21888 Y Linepithema humile Argentine ant  Lhum\LH23807 Y Linepithema humile Argentine ant  Lhum\LH19211 Y Linepithema humile Argentine ant  Lhum\LH16388 Y Linepithema humile Argentine ant  Lhum\LH16391 Y Linepithema humile Argentine ant  Lhum\LH19218 Y Linepithema humile Argentine ant  Lhum\LH16383 Y Linepithema humile Argentine ant  Lhum\LH10870 Y Linepithema humile Argentine ant  Lhum\LH24581 Y Linepithema humile Argentine ant  Lhum\LH24582 Y Linepithema humile Argentine ant  Lhum\LH16382 Y Linepithema humile Argentine ant  Lhum\LH24583 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB20785 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB14690 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB18423 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB14691 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB18425 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB14673 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB20784 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB14688 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB20800 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB24199 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB14682 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB20794 Y Solenopsis invicta Red fire ant  Sinv\SINV25632 Y Solenopsis invicta Red fire ant  Sinv\SINV21745 Y Solenopsis invicta Red fire ant  Sinv\SINV21730 Y Solenopsis invicta Red fire ant  Sinv\SINV25026 Y Solenopsis invicta Red fire ant  Sinv\SINV16553 Y Solenopsis invicta Red fire ant  Sinv\SINV21768 Y Solenopsis invicta Red fire ant  Sinv\SINV25020 Y Solenopsis invicta Red fire ant  Sinv\SINV25023 Y Solenopsis invicta Red fire ant  Sinv\SINV16530 Y Solenopsis invicta Red fire ant  Sinv\SINV21761 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI009006 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI066082 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI003649 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI001610 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI005591 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI001775 Y Bombyx mori Silkmoth  Bmor\BmorCPR23 Y Bombyx mori Silkmoth  Bmor\BmorCPR39 Y Bombyx mori Silkmoth  Bmor\BmorCPR6 Y Bombyx mori Silkmoth  Bmor\BmorCPR33 Y Bombyx mori Silkmoth  Bmor\BGIBMGA000340 Y Bombyx mori Silkmoth  Bmor\BmorCPR26 Y Bombyx mori Silkmoth  Bmor\BmorCPR37 Y Bombyx mori Silkmoth  Bmor\BGIBMGA007015 Y Bombyx mori Silkmoth  Bmor\BmorCPR7 Y Bombyx mori Silkmoth  Bmor\BmorCPR24 Y Bombyx mori Silkmoth  Bmor\BmorCPR4 Y Bombyx mori Silkmoth  Bmor\BGIBMGA000341 Y Bombyx mori Silkmoth  Bmor\BmorCPR34 Y Bombyx mori Silkmoth  Bmor\BmorCPR27 Y Bombyx mori Silkmoth  Bmor\BmorCPR18 Y Bombyx mori Silkmoth  Bmor\BGIBMGA002549 Y Bombyx mori Silkmoth  Bmor\BmorCPR38 Y Bombyx mori Silkmoth  Bmor\BmorCPR43 Y Bombyx mori Silkmoth  Bmor\BmorCPR42 Y Bombyx mori Silkmoth  Bmor\BmorCPR32 Y Bombyx mori Silkmoth  Bmor\BmorCPR49 Y Bombyx mori Silkmoth  Bmor\BmorCPR13 Y Bombyx mori Silkmoth  Bmor\BmorCPR9 Y Bombyx mori Silkmoth  Bmor\BGIBMGA005277 Y Bombyx mori Silkmoth  Bmor\BmorCPR19 Y Pediculus humanus Human body louse  Phum\PHUM392770 Y Pediculus humanus Human body louse  Phum\PHUM605650 Y Pediculus humanus Human body louse  Phum\PHUM392750 Y Pediculus humanus Human body louse  Phum\PHUM605980 Y Pediculus humanus Human body louse  Phum\PHUM601840 Y Pediculus humanus Human body louse  Phum\PHUM606390 Y Pediculus humanus Human body louse  Phum\PHUM392730 Y Tribolium castaneum Red flour beetle  Tcas\TC013127 Y Tribolium castaneum Red flour beetle  Tcas\TC014500 Y Tribolium castaneum Red flour beetle  Tcas\TC014499 Y Tribolium castaneum Red flour beetle  Tcas\TC013131 Y Tribolium castaneum Red flour beetle  Tcas\TC014685 Y Tribolium castaneum Red flour beetle  Tcas\TC003831 Y Tribolium castaneum Red flour beetle  Tcas\TC013307 Y Tribolium castaneum Red flour beetle  Tcas\TC003834 Y Tribolium castaneum Red flour beetle  Tcas\TC013129 Y Tribolium castaneum Red flour beetle  Tcas\TC003832 Y Tribolium castaneum Red flour beetle  Tcas\TC014497 Y Tribolium castaneum Red flour beetle  Tcas\TC014770 Y Tribolium castaneum Red flour beetle  Tcas\TC013139 Y Tribolium castaneum Red flour beetle  Tcas\TC014771 Y Tribolium castaneum Red flour beetle  Tcas\TC013128 Y Tribolium castaneum Red flour beetle  Tcas\TC014498 Y Tribolium castaneum Red flour beetle  Tcas\TC014686 Y Tribolium castaneum Red flour beetle  Tcas\TC003830 Y Tribolium castaneum Red flour beetle  Tcas\TC003835 Y Tribolium castaneum Red flour beetle  Tcas\TC013138 Y Tribolium castaneum Red flour beetle  Tcas\TC004547 Y Tribolium castaneum Red flour beetle  Tcas\TC013130 Y Tribolium castaneum Red flour beetle  Tcas\TC013135 Y Tribolium castaneum Red flour beetle  Tcas\TC014720 Y Tribolium castaneum Red flour beetle  Tcas\TC002595 Y Tribolium castaneum Red flour beetle  Tcas\TC013126 Y Tribolium castaneum Red flour beetle  Tcas\TC004548 Y
Orthologs in non-Insect Arthropods (EOG63R24R)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\Map1d Y Daphnia pulex Water flea  Dpux\JGI_V11_253508 Y Daphnia pulex Water flea  Dpux\JGI_V11_58106 Y Daphnia pulex Water flea  Dpux\JGI_V11_263371 Y Daphnia pulex Water flea  Dpux\EF-1 alpha Y Daphnia pulex Water flea  Dpux\Psma3 Y Daphnia pulex Water flea  Dpux\MESK4 Y Daphnia pulex Water flea  Dpux\JGI_V11_60605 Y Daphnia pulex Water flea  Dpux\JGI_V11_303748 Y Daphnia pulex Water flea  Dpux\ycf9 Y Daphnia pulex Water flea  Dpux\Nktr Y Daphnia pulex Water flea  Dpux\JGI_V11_60650 Y Daphnia pulex Water flea  Dpux\JGI_V11_302740 Y Daphnia pulex Water flea  Dpux\JGI_V11_325416 Y Daphnia pulex Water flea  Dpux\PB2 Y Daphnia pulex Water flea  Dpux\JGI_V11_229448 Y Daphnia pulex Water flea  Dpux\JGI_V11_263370 Y Daphnia pulex Water flea  Dpux\JGI_V11_303733 Y Daphnia pulex Water flea  Dpux\JGI_V11_332302 Y Daphnia pulex Water flea  Dpux\JGI_V11_224365 Y Daphnia pulex Water flea  Dpux\JGI_V11_301237 Y Daphnia pulex Water flea  Dpux\Wbp4 Y Daphnia pulex Water flea  Dpux\JGI_V11_229447 Y Daphnia pulex Water flea  Dpux\CLDN25 Y Daphnia pulex Water flea  Dpux\ND1 Y Daphnia pulex Water flea  Dpux\JGI_V11_302183 Y Daphnia pulex Water flea  Dpux\JGI_V11_110014 Y Daphnia pulex Water flea  Dpux\mp20 Y Daphnia pulex Water flea  Dpux\JGI_V11_325539 Y Daphnia pulex Water flea  Dpux\JGI_V11_302739 Y Daphnia pulex Water flea  Dpux\JGI_V11_219079 Y Daphnia pulex Water flea  Dpux\Prc1 Y Daphnia pulex Water flea  Dpux\JGI_V11_109945 Y Daphnia pulex Water flea  Dpux\PB1-F2 Y Daphnia pulex Water flea  Dpux\JGI_V11_64995 Y Daphnia pulex Water flea  Dpux\JGI_V11_332314 Y Ixodes scapularis Deer tick  Isca\ISCW003132 Y Ixodes scapularis Deer tick  Isca\ISCW003791 Y Ixodes scapularis Deer tick  Isca\ISCW020944 Y Ixodes scapularis Deer tick  Isca\ISCW019775 Y Ixodes scapularis Deer tick  Isca\ISCW002954 Y Ixodes scapularis Deer tick  Isca\ISCW020943 Y Ixodes scapularis Deer tick  Isca\ISCW016302 Y Ixodes scapularis Deer tick  Isca\ISCW013798 Y Ixodes scapularis Deer tick  Isca\ISCW016310 Y Ixodes scapularis Deer tick  Isca\ISCW007107 Y
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (7) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD13939 Drosophila sechellia Dsec\GM14760 Drosophila ananassae Dana\GF23521 Drosophila pseudoobscura pseudoobscura Dpse\GA19982 Drosophila persimilis Dper\GL15557 Drosophila willistoni Dwil\GK17269 Drosophila virilis Dvir\GJ12740
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
VDRC	v102780 P{KK112424}VIE-260B v7548 w1118 P{GD509}v7548 v43375 w1118; P{GD15410}v43375 v48747 w1118; P{GD15410}v48747 v43376 w1118; P{GD15410}v43376/TM3
Genomic Clones ( 1 )
	BACR09G21 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 140 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE33063
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	RE54556
Other clones	70309 CK01.70D.G3 EK056326 EK198037 RP003015722 RP003024164 RP003029725 RP003033390 RP003037028 RP003041068 RP003046434 RP003049495 RP003055010 RP003055510 RP003055943 RP003060476 RP003083237 RP003083620 RP003087592 RP003096922 RP003097571 RP003105825 RP003106713 RP003109255 RP003116853 RP003119600 RP003120375 RP003126852 RP003142036 RP003143751 RP003146843 RP003150831 RP003153828 RP003161584 RP003163352 RP003170639 RP003172917 RP003173537 RP003174087 RP003174244 RP003190164 RP003201547 RP003201600 RP003232334 RP003242645 RP003250497 RP003253713 RP003257172 RP003260820 RP003263516 RP003269136 RP003270979 RP003271847 RP003275102 RP003276624 RP003279547 RP003280549 RP003281698 RP003283158 RP003295159 RP003306047 RP003315417 RP003315958 RP003322687 RP003328203 RP003329287 RP003332300 RP003340899 RP003345520 RP003350012 RP003358110 RP003362376 RP003362676 RP003370123 RP003373440 RP003377437 RP003394609 RP003411365 RP003416085 RP003416490 RP003425665 RP003427747 RP003429634 RP003432083 RP003436527 RP003436554 RP003446279 RP003453980 RP003455935 RP003463760 RP003480659 RP003489614 RP003491082 RP003491419 RP003491522 RP003491525 RP003498975 RP003499311 RP003499767 RP003506919 RP003508053 RP003511343 RP003515647 RP003521916 RP003524259 RP003525854 RP003526280 RP003536418 RP003543489 RP003548424 RP003553271 RP003553744 RP003557771 RP003564577 RP003565898 RP003574874 RP003580117 RP003581686 RP003582542 RP003586881 RP003590945 RP003595048 RP003598898 RP003600571 RP003601042 RP003608658 RP003612559 RP003617358 RP003619857 RP003623877 RP003637989 RP003643146 RP003643313 RP003644971 RP003654569 RP003670966 RP003680822 RP003681406
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0020642 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38708
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Lcp65Ac CG6956 (Gabrielian, 1999.11)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_057931 RefSeq (Proteins) • NP_477279 DDBJ / EMBL / GenBank • AAB48462 AAB88064 AAF50687 AAL48925 AC004357 AC004767 AY071303 BI236933 U84745 U84755 Entrez Gene - A searchable database of RefSeq genes. • 38708 UniProtKB/TrEMBL • P92181
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Insect cuticle protein (IPR000618) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE33063
Linkouts
	BioGRID - A database of protein and genetic interactions • 64161 DroID - A comprehensive database of gene and protein interactions. • FBgn0020642 DRSC - Results from RNAi screens. • FBgn0020642 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0020642 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6956-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0020642 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38708 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38708 modMine - Data generated by the modENCODE project. • FBgn0020642
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	CG6956 (Keleman et al., 2009.8.5) DCP2 (Charles, 1997.1.6, ) DMLCP65c (Iconomidou et al., 1999) Lcp65Ac (Willis, 2007.1.3, Karouzou et al., 2007, Karouzou et al., 2007, Blanco et al., 2008) LCP65Ac (Karouzou et al., 2007) Lcp-c (Charles et al., 1998)
Name Synonym	Lcp65Ac
Secondary FlyBase IDs
References ( 27 )
Generate a list of	All references relating to this gene ( 27 )
List References by type	Research paper  ( 6 ) Supplementary material  ( 5 ) Review  ( 1 ) Erratum  ( 1 ) Personal communication to FlyBase  ( 7 ) FlyBase analysis  ( 2 ) DNA/RNA sequence record  ( 1 ) Curated genome annotation  ( 3 ) Website  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...