Gene Dmel\Lcp65AΨ

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General Information

Symbol

Dmel\Lcp65AΨ

Species

D. melanogaster

Name

Lcp65AΨ

Annotation symbol

CR18775

Feature type

pseudogene_attribute

FlyBase ID

FBgn0020646

Gene Model Status

Current

Stock availability

None publicly available

Also Known As

Lcp-a^Ψ

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

65A6-65A6

Sequence location

3L:6,141,453..6,141,715 [+]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

The gene Lcp65AΨ is referred to in FlyBase by the symbol Dmel\Lcp65AΨ (CR18775, FBgn0020646). It is a pseudogene_attribute from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has one annotated transcript. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very low expression to a trough of no expression detected. Peak expression observed within 18-24 hour embryonic stages, at stages throughout the larval period. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1631002_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Lcp65APsi. Gene sequence location is 3L:6141453..6141715.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

65A6-65A6

Limits computationally determined from genome sequence between P{PZ}loj⁰⁴⁰²⁶ and P{PZ}l(3)02094⁰²⁰⁹⁴

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\Lcp65AΨ for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Pseudogene similar to Lcp65Aa; proximate; created by 2kb tandem duplication.

Gene model reviewed during 5.46

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Lcp65AΨ-RA

FBtr0076993

NR_001423

263

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Name

BT099966

U84748

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		7.925
Larval Midgut		67.1
Larval Hindgut		9.3
Larval Malpighian Tubules		10.7
Larval Fat Body		12.7
Larval Salivary Gland		13.7
Larval Trachea		6.75
Larval Carcass		8.75
Adult Head		11.6
Adult Eye		4
Adult Brain		7.5
Adult Thoracic-Abdominal Ganglion		10.9
Adult Crop		7.6
Adult Midgut		34.2
Adult Hindgut		9.7
Adult Malpighian Tubules		6.1
Adult Fat Body		12.1
Adult Salivary Gland		20.8
Adult Heart		3.275
Adult VirginFemale Spermatheca		6.2
Adult InseminatedFemale Spermatheca		7.1
Adult Ovary		8.8
Adult Testis		3.7
Adult Male Accessory Gland		23.4
Adult Carcass		7.4
Expression Level Scale		None Low

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		7.925
Larval Midgut		67.1
Larval Hindgut		9.3
Larval Malpighian Tubules		10.7
Larval Fat Body		12.7
Larval Salivary Gland		13.7
Larval Trachea		6.75
Larval Carcass		8.75
Adult Head		11.6
Adult Eye		4
Adult Brain		7.5
Adult Thoracic-Abdominal Ganglion		10.9
Adult Crop		7.6
Adult Midgut		34.2
Adult Hindgut		9.7
Adult Malpighian Tubules		6.1
Adult Fat Body		12.1
Adult Salivary Gland		20.8
Adult Heart		3.275
Adult VirginFemale Spermatheca		6.2
Adult InseminatedFemale Spermatheca		7.1
Adult Ovary		8.8
Adult Testis		3.7
Adult Male Accessory Gland		23.4
Adult Carcass		7.4
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		7.925
Larval Midgut		67.1
Larval Hindgut		9.3
Larval Malpighian Tubules		10.7
Larval Fat Body		12.7
Larval Salivary Gland		13.7
Larval Trachea		6.75
Larval Carcass		8.75
Adult Head		11.6
Adult Eye		4
Adult Brain		7.5
Adult Thoracic-Abdominal Ganglion		10.9
Adult Crop		7.6
Adult Midgut		34.2
Adult Hindgut		9.7
Adult Malpighian Tubules		6.1
Adult Fat Body		12.1
Adult Salivary Gland		20.8
Adult Heart		3.275
Adult VirginFemale Spermatheca		6.2
Adult InseminatedFemale Spermatheca		7.1
Adult Ovary		8.8
Adult Testis		3.7
Adult Male Accessory Gland		23.4
Adult Carcass		7.4
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		7.925
Larval Midgut		67.1
Larval Hindgut		9.3
Larval Malpighian Tubules		10.7
Larval Fat Body		12.7
Larval Salivary Gland		13.7
Larval Trachea		6.75
Larval Carcass		8.75
Adult Head		11.6
Adult Eye		4
Adult Brain		7.5
Adult Thoracic-Abdominal Ganglion		10.9
Adult Crop		7.6
Adult Midgut		34.2
Adult Hindgut		9.7
Adult Malpighian Tubules		6.1
Adult Fat Body		12.1
Adult Salivary Gland		20.8
Adult Heart		3.275
Adult VirginFemale Spermatheca		6.2
Adult InseminatedFemale Spermatheca		7.1
Adult Ovary		8.8
Adult Testis		3.7
Adult Male Accessory Gland		23.4
Adult Carcass		7.4
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		7.925
Larval Midgut		67.1
Larval Hindgut		9.3
Larval Malpighian Tubules		10.7
Larval Fat Body		12.7
Larval Salivary Gland		13.7
Larval Trachea		6.75
Larval Carcass		8.75
Adult Head		11.6
Adult Eye		4
Adult Brain		7.5
Adult Thoracic-Abdominal Ganglion		10.9
Adult Crop		7.6
Adult Midgut		34.2
Adult Hindgut		9.7
Adult Malpighian Tubules		6.1
Adult Fat Body		12.1
Adult Salivary Gland		20.8
Adult Heart		3.275
Adult VirginFemale Spermatheca		6.2
Adult InseminatedFemale Spermatheca		7.1
Adult Ovary		8.8
Adult Testis		3.7
Adult Male Accessory Gland		23.4
Adult Carcass		7.4
Expression Level Scale		None Low Moderate

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		7.925
Larval Midgut		67.1
Larval Hindgut		9.3
Larval Malpighian Tubules		10.7
Larval Fat Body		12.7
Larval Salivary Gland		13.7
Larval Trachea		6.75
Larval Carcass		8.75
Adult Head		11.6
Adult Eye		4
Adult Brain		7.5
Adult Thoracic-Abdominal Ganglion		10.9
Adult Crop		7.6
Adult Midgut		34.2
Adult Hindgut		9.7
Adult Malpighian Tubules		6.1
Adult Fat Body		12.1
Adult Salivary Gland		20.8
Adult Heart		3.275
Adult VirginFemale Spermatheca		6.2
Adult InseminatedFemale Spermatheca		7.1
Adult Ovary		8.8
Adult Testis		3.7
Adult Male Accessory Gland		23.4
Adult Carcass		7.4
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		7.925
Larval Midgut		67.1
Larval Hindgut		9.3
Larval Malpighian Tubules		10.7
Larval Fat Body		12.7
Larval Salivary Gland		13.7
Larval Trachea		6.75
Larval Carcass		8.75
Adult Head		11.6
Adult Eye		4
Adult Brain		7.5
Adult Thoracic-Abdominal Ganglion		10.9
Adult Crop		7.6
Adult Midgut		34.2
Adult Hindgut		9.7
Adult Malpighian Tubules		6.1
Adult Fat Body		12.1
Adult Salivary Gland		20.8
Adult Heart		3.275
Adult VirginFemale Spermatheca		6.2
Adult InseminatedFemale Spermatheca		7.1
Adult Ovary		8.8
Adult Testis		3.7
Adult Male Accessory Gland		23.4
Adult Carcass		7.4
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		7.925
Larval Midgut		67.1
Larval Hindgut		9.3
Larval Malpighian Tubules		10.7
Larval Fat Body		12.7
Larval Salivary Gland		13.7
Larval Trachea		6.75
Larval Carcass		8.75
Adult Head		11.6
Adult Eye		4
Adult Brain		7.5
Adult Thoracic-Abdominal Ganglion		10.9
Adult Crop		7.6
Adult Midgut		34.2
Adult Hindgut		9.7
Adult Malpighian Tubules		6.1
Adult Fat Body		12.1
Adult Salivary Gland		20.8
Adult Heart		3.275
Adult VirginFemale Spermatheca		6.2
Adult InseminatedFemale Spermatheca		7.1
Adult Ovary		8.8
Adult Testis		3.7
Adult Male Accessory Gland		23.4
Adult Carcass		7.4
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	no informative data
NA	Eye	4
NA	Brain	7.5
7.925	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	no informative data
NA	Crop	7.6
67.1	Midgut	no informative data
9.3	Hindgut	9.7
no informative data	Malpighian Tubules	6.1
no informative data	Fat Body	no informative data
13.7	Salivary Gland	no informative data
NA	Heart	3.275
6.75	Trachea	NA
NA	VirginFemale Spermatheca	6.2
NA	InseminatedFemale Spermatheca	7.1
NA	Ovary	8.8
NA	Testis	3.7
NA	Male Accessory Gland	no informative data
8.75	Carcass	7.4

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very low expression to a trough of no expression detected. Peak expression observed within 18-24 hour embryonic stages, at stages throughout the larval period.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		0
white prepupae 24hr		0
pupae 2d postWPP		0
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		0
white prepupae 24hr		0
pupae 2d postWPP		0
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		0
white prepupae 24hr		0
pupae 2d postWPP		0
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		0
white prepupae 24hr		0
pupae 2d postWPP		0
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		0
white prepupae 24hr		0
pupae 2d postWPP		0
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		0
white prepupae 24hr		0
pupae 2d postWPP		0
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		0
white prepupae 24hr		0
pupae 2d postWPP		0
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		0
embryo 08-10hr		0
embryo 10-12hr		0
embryo 12-14hr		0
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		0
larva L3 12hr old		1
larva L3 puffstage 1-2		1
larva L3 puffstage 3-6		0
larva L3 puffstage 7-9		0
white prepupae new		0
white prepupae 12hr		0
white prepupae 24hr		0
pupae 2d postWPP		0
pupae 3d postWPP		0
pupae 4d postWPP		0
adult male 01day		0
adult male 05day		0
adult male 30day		0
adult female 01day		0
adult female 05day		0
adult female 30day		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Treatments RNA-Seq

Expression Clusters

External Data & Images

Linkouts

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of Lcp65AΨ	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 0 )

For All Alleles Carried on Transgenic Constructs Show

Allele of Lcp65AΨ	Class	Mutagen	Stocks	Known lesion

Aneuploid Aberrations

Disrupted in

Df(3L)Exel8101

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

non_protein_coding_gene

(FlyBase Genome Annotators, 2012)

nuclear_gene

(Charles et al., 1997)

pseudogene_attribute

(Charles et al., 1997)

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

Lcp65AΨ allele

Gene

References

External Data

Linkouts

Orthologs

OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

No orthologs identified

Dipteran inclusive ortholog search

No orthologs identified

Insect inclusive ortholog search

No orthologs identified

Arthropod inclusive ortholog search

No orthologs identified

Metazoa inclusive ortholog search

No orthologs identified

Orthologs in Drosophila Species (None identified)

No orthologies identified

Orthologs in non-Drosophila Dipterans (None identified)

No non-Drosophilid orthologies identified

Orthologs in non-Dipteran Insects (None identified)

No non-Dipteran orthologies identified

Orthologs in non-Insect Arthropods (None identified)

No non-Insect Arthropod orthologies identified

Orthologs in non-Arthropod Metazoa (None identified)

No non-Arthropod Metazoa orthologies identified

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (0) based on analysis using Dmel annotation version 4.3

No orthologs identified

Stocks & Reagents

Stocks Listed in FlyBase ( 0 )

Genomic Clones ( 1 )

BACR09G21

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 1 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

RT02902

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0020646

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

3771993

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Source for merge of: Lcp65AΨ CG18775

(FlyBase, 1996-)

Additional comments

Source for merge of Lcp65AΨ CG18775 was sequence comparison (date:010920).

(FlyBase, 1996-)

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NR_001423

DDBJ / EMBL / GenBank

•

U84748

Other Crossreferences

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0020646

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0020646

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

3771993

modMine - Data generated by the modENCODE project.

•

FBgn0020646

Synonyms & Secondary IDs ( 9 )

Reported As

Symbol Synonym

CG18775

CR18775

DCP4^Ψ

LCP65Aapsi

(Charles, 1997.1.3)

Lcp65APsi

(Bellen et al., 2004)

Lcp65AΨ

(FlyBase Genome Annotators, 2012)

Lcp-a^Ψ

(Balakirev and Ayala, 2003, Charles et al., 1998)

Lcp-Psi

(Comeron and Kreitman, 2000)

Name Synonym

Larval cuticle protein Ψ

(Petrov, 2002)

Lcp65AΨ

Secondary FlyBase IDs

FBgn0042116

References ( 13 )

Research paper

Bellen et al., 2004, Genetics 167(2): 761--781: The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes. [FBrf0179132]
Petrov, 2002, Genetica 115(1): 81--91: DNA loss and evolution of genome size in Drosophila. [FBrf0152022]
Comeron and Kreitman, 2000, Genetics 156(3): 1175--1190: The correlation between intron length and recombination in Drosophila. Dynamic equilibrium between mutational and selective forces. [FBrf0131278]
Charles et al., 1998, Insect Biochem. Mol. Biol. 28(3): 131--138: Identification of proteins and developmental expression of RNAs encoded by the 65A cuticle protein gene cluster in Drosophila melanogaster. [FBrf0102898]
Charles et al., 1997, Genetics 147(3): 1213--1224: A cluster of cuticle protein genes of Drosophila melanogaster at 65A: sequence, structure and evolution. [FBrf0099152]

Review

Balakirev and Ayala, 2003, A. Rev. Genet. 37: 123--151: Pseudogenes: are they 'junk' or functional DNA? [FBrf0167265]

Erratum

Charles et al., 1998, Genetics 148(2): 921: A cluster of cuticle protein genes of Drosophila melanogaster at 65A: sequence, structure and evolution. [FBrf0102191]

Personal communication to FlyBase

Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]
Chihara, 1997.7.31, Lcp genes again again.: Lcp genes again again. [FBrf0094427]
Riddiford, 1997.7.7, Cuticle gene nomenclature.: Cuticle gene nomenclature. [FBrf0096156]

FlyBase analysis

FlyBase Genome Annotators, 2012, Changes affecting gene model number or type in release 5.47 of the annotated D.melanogaster genome.: Changes affecting gene model number or type in release 5.47 of the annotated D.melanogaster genome. [FBrf0218597]
FlyBase, 1996-, FlyBase inference based on genome sequence analysis.: FlyBase inference based on genome sequence analysis. [FBrf0104946]

DNA/RNA sequence record

Charles, 1997.1.3, GenBank/EMBL/DDBJ: U84748: Drosophila melanogaster cuticle protein LCP65Aapsi pseudogene. [FBrf0113732]