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Gene Dsim\pm

General Information
Symbol	Dsim\pm	Species	D. simulans
Name	plum	Annotation symbol
Feature type	gene	FlyBase ID	FBgn0021113
Gene Model Status	Unannotated	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)		Recombination map
Cytogenetic map		Sequence location
Summary Information
Automatically generated summary See sections below for more information	The gene plum is referred to in FlyBase by the symbol Dsim\pm (FBgn0021113). It is a gene from Drosophila simulans. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. The phenotype of this allele is annotated with: pigment cell. It has no annotated transcripts. Gene has not been localized to the genome sequence.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location	2-103 (Sturtevant, 1929) 2- (Coyne, 1997.1.2) 2-143.9 (Barker and Moth, 2001)
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa)
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
Mapped Features
Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
modENCODE Anatomy RNA-Seq
modENCODE Development RNA-Seq
modENCODE Cell Lines RNA-Seq
modENCODE Treatments RNA-Seq
Expression Clusters
External Data & Images
Linkouts
Alleles & Phenotypes
Summary of Allele Phenotypes
Other Phenotypes Allele eye color defective Dsim\pm1 visible | recessive Dsim\pm1 Phenotype manifest in Allele pigment cell Dsim\pm1
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of Dsim\pm Class Mutagen Stocks Known lesion Dsim\pm1 spontaneous 5 --
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Dsim\pm Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Dsim\pm allele Gene References
External Data
Linkouts
Orthologs
OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search No orthologs identified Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Ortholog(s) in Drosophila melanogaster (None identified)
No D. melanogaster orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
UC San Diego	14021-0251.027 net1 pm1 14021-0251.114 py1 Clr1 pm1 14021-0251.042 net1 pm1; st1 e1 14021-0251.031 net1 b1 py1 sd1 pm1 14021-0251.041 f2; net1 pm1; st1 e1
Genomic Clones ( 0 )
cDNA Clones ( 0 )
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	Mutant alleles were used in the analysis of the chromosomal complement of the D.simulans/D.sechellia hybrids. (Coyne, 1996) Genetic analysis of hybrids between D.sechellia and D.simulans show that each of the five major chromosome arms carries at least one gene affecting the ratio of the 6- and 7- tricosene isomers, with the right arm of the third chromosome having the largest effect. (Coyne, 1996) Dsim\pm mutants fail to complement Pu mutants in hybrids. (Sugaya and Fuyama, 1995)
External Crossreferences & Linkouts
Sequence Crossreferences
Other Crossreferences
Linkouts
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	Dsim\pm   Dsim\Pu   pm (Joly et al., 1997)
Name Synonym	plum (Joly et al., 1997)
Secondary FlyBase IDs
	FBgn0012889
References ( 13 )
Research paper	Gleason et al., 2005, Genetics 171(4): 1789--1798 Quantitative trait loci for cuticular hydrocarbons associated with sexual isolation between Drosophila simulans and D. sechellia. [FBrf0190723] Gleason and Ritchie, 2004, Genetics 166(3): 1303--1311 Do quantitative trait loci (QTL) for a courtship song difference between Drosophila simulans and D. sechellia coincide with candidate genes and intraspecific QTL? [FBrf0174687] Barker and Moth, 2001, D. I. S. 84: 205--206 Linkage maps of D. simulans: An update of Sturtevant (1929) with additional loci. [FBrf0150749] Joly et al., 1997, Heredity 78(4): 354--362 Genetic basis of sperm and testis length differences and epistatic effect on hybrid inviability and sperm motility between Drosophila simulans and D. sechellia. [FBrf0093531] Yamamoto et al., 1997, Genes & Genet. Systems 72(5): 297--301 Cytogenetic mapping of the lethal hybrid rescue gene of Drosophila simulans. [FBrf0103069] Coyne, 1996, Genetics 143(4): 1689--1698 Genetics of a difference in male cuticular hydrocarbons between two sibling species, Drosophila simulans and D. sechellia. [FBrf0089623] Hollocher and Wu, 1996, Genetics 143(3): 1243--1255 The genetics of reproductive isolation in the Drosophila simulans clade: X vs. autosomal effects and male vs. female effects. [FBrf0088212] Sugaya and Fuyama, 1995, D. I. S. 76: 81 plum of D. simulans is homologous to Punch of D. melanogaster. [FBrf0082667] Sawamura et al., 1993, Genetics 133(2): 299--305 Hybrid lethal systems in the Drosophila melanogaster species complex. [FBrf0058560] Sturtevant, 1929, Publs Carnegie Instn 399: 1--62 Contributions to the genetics of Drosophila simulans and Drosophila melanogaster. [FBrf0001865] Sturtevant, 1921, Genetics 6: 179--207 Genetic studies on Drosophila simulans. [FBrf0001082]
Stock list	Coyne, 1997.1.2, [title not yet available] [title not yet available] [FBrf0098117] Drosophila Species Resource Center, 1996, D. I. S. 77: 1--44 Stock list. [FBrf0090158]