A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\Hira

General Information
SymbolDmel\HiraSpeciesD. melanogaster
NameHiraAnnotation symbolCG12153
Feature typeprotein_coding_geneFlyBase IDFBgn0022786
Gene Model StatusCurrent Stock availability 4 publicly available
Also Known Asssm, dHira, Dhh
Genomic Location
Chromosome (arm)XRecombination map
Cytogenetic map7B7-7B7Sequence locationX:7,616,167..7,619,942 [+]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene Hira is referred to in FlyBase by the symbol Dmel\Hira (CG12153, FBgn0022786). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: chromatin binding. There is experimental evidence that it is involved in the biological process: fertilization, exchange of chromosomal proteins; sperm chromatin decondensation; DNA replication-independent nucleosome assembly; chromatin remodeling. 10 alleles are reported. The phenotype of these alleles is annotated with: male pronucleus. It has one annotated transcript and one annotated polypeptide. Protein features are: G-protein beta WD-40 repeat; HIRA B motif; Quinonprotein alcohol dehydrogenase-like; TUP1-like enhancer of split; WD40 repeat; WD40 repeat 2; WD40 repeat, conserved site; WD40 repeat, subgroup; WD40 repeat-like-containing domain; WD40-repeat-containing domain; WD40/YVTN repeat-like-containing domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval/adult Malpighian tubules, larval salivary gland, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1640173_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Hira. Gene sequence location is X:7616167..7619942.

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Description
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FB2011_10
Transgenic Constructs
FB2012_01
Sequence features
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
7B7-7B7  
Limits computationally determined from genome sequence between P{EP}CHES-1-likeEP1453 and P{EP}EP1209  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
7B3-7B3  
7B2-7B3  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\Hira for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0071070 FBtr0071077 FBpp0071028 FBpp0071034
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0071070
  3397
  1047
Additional Transcript Data & Comments
Reported size (kB)
4.1 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0071028  
113.4  
1047  
6.64  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Hira transcripts are detected at all stages of development on northern blots but are strongest in adult females, unfertilized eggs, and 0-3hr embryos. Transcripts are ubiquitously distributed in blastoderm embryos. By cellularization, transcript levels decrease significantly. In ovaries, Hira transcripts are first detected in mid stage nurse cells. Later they are detected at high levels in oocytes.
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view Hira-RA NELF-B-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0022786


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0022786
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0022786 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 2899
embryo 02-04hr
 
 412
embryo 04-06hr
 
 566
embryo 06-08hr
 
 944
embryo 08-10hr
 
 801
embryo 10-12hr
 
 737
embryo 12-14hr
 
 404
embryo 14-16hr
 
 306
embryo 16-18hr
 
 218
embryo 18-20hr
 
 116
embryo 20-22hr
 
 103
embryo 22-24hr
 
 122
larva L1
 
 342
larva L2
 
 358
larva L3 12hr old
 
 342
larva L3 puffstage 1-2
 
 385
larva L3 puffstage 3-6
 
 470
larva L3 puffstage 7-9
 
 500
white prepupae new
 
 518
white prepupae 12hr
 
 628
white prepupae 24hr
 
 676
pupae 2d postWPP
 
 421
pupae 3d postWPP
 
 243
pupae 4d postWPP
 
 204
adult male 01day
 
 342
adult male 05day
 
 492
adult male 30day
 
 452
adult female 01day
 
 845
adult female 05day
 
 1694
adult female 30day
 
 1720
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2899)
embryo 02-04hr
 (412)
embryo 04-06hr
 (566)
embryo 06-08hr
 (944)
embryo 08-10hr
 (801)
embryo 10-12hr
 (737)
embryo 12-14hr
 (404)
embryo 14-16hr
 (306)
embryo 16-18hr
 (218)
embryo 18-20hr
 (116)
embryo 20-22hr
 103
embryo 22-24hr
 (122)
larva L1
 (342)
larva L2
 (358)
larva L3 12hr old
 (342)
larva L3 puffstage 1-2
 (385)
larva L3 puffstage 3-6
 (470)
larva L3 puffstage 7-9
 (500)
white prepupae new
 (518)
white prepupae 12hr
 (628)
white prepupae 24hr
 (676)
pupae 2d postWPP
 (421)
pupae 3d postWPP
 (243)
pupae 4d postWPP
 (204)
adult male 01day
 (342)
adult male 05day
 (492)
adult male 30day
 (452)
adult female 01day
 (845)
adult female 05day
 (1694)
adult female 30day
 (1720)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2899)
embryo 02-04hr
 
 412
embryo 04-06hr
 
 566
embryo 06-08hr
 
 944
embryo 08-10hr
 
 801
embryo 10-12hr
 
 737
embryo 12-14hr
 
 404
embryo 14-16hr
 
 306
embryo 16-18hr
 
 218
embryo 18-20hr
 
 116
embryo 20-22hr
 
 103
embryo 22-24hr
 
 122
larva L1
 
 342
larva L2
 
 358
larva L3 12hr old
 
 342
larva L3 puffstage 1-2
 
 385
larva L3 puffstage 3-6
 
 470
larva L3 puffstage 7-9
 
 500
white prepupae new
 
 518
white prepupae 12hr
 
 628
white prepupae 24hr
 
 676
pupae 2d postWPP
 
 421
pupae 3d postWPP
 
 243
pupae 4d postWPP
 
 204
adult male 01day
 
 342
adult male 05day
 
 492
adult male 30day
 
 452
adult female 01day
 
 845
adult female 05day
 (1694)
adult female 30day
 (1720)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2899
embryo 02-04hr
 
 412
embryo 04-06hr
 
 566
embryo 06-08hr
 
 944
embryo 08-10hr
 
 801
embryo 10-12hr
 
 737
embryo 12-14hr
 
 404
embryo 14-16hr
 
 306
embryo 16-18hr
 
 218
embryo 18-20hr
 
 116
embryo 20-22hr
 
 103
embryo 22-24hr
 
 122
larva L1
 
 342
larva L2
 
 358
larva L3 12hr old
 
 342
larva L3 puffstage 1-2
 
 385
larva L3 puffstage 3-6
 
 470
larva L3 puffstage 7-9
 
 500
white prepupae new
 
 518
white prepupae 12hr
 
 628
white prepupae 24hr
 
 676
pupae 2d postWPP
 
 421
pupae 3d postWPP
 
 243
pupae 4d postWPP
 
 204
adult male 01day
 
 342
adult male 05day
 
 492
adult male 30day
 
 452
adult female 01day
 
 845
adult female 05day
 
 1694
adult female 30day
 
 1720
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2899
embryo 02-04hr
 
 412
embryo 04-06hr
 
 566
embryo 06-08hr
 
 944
embryo 08-10hr
 
 801
embryo 10-12hr
 
 737
embryo 12-14hr
 
 404
embryo 14-16hr
 
 306
embryo 16-18hr
 
 218
embryo 18-20hr
 
 116
embryo 20-22hr
 
 103
embryo 22-24hr
 
 122
larva L1
 
 342
larva L2
 
 358
larva L3 12hr old
 
 342
larva L3 puffstage 1-2
 
 385
larva L3 puffstage 3-6
 
 470
larva L3 puffstage 7-9
 
 500
white prepupae new
 
 518
white prepupae 12hr
 
 628
white prepupae 24hr
 
 676
pupae 2d postWPP
 
 421
pupae 3d postWPP
 
 243
pupae 4d postWPP
 
 204
adult male 01day
 
 342
adult male 05day
 
 492
adult male 30day
 
 452
adult female 01day
 
 845
adult female 05day
 
 1694
adult female 30day
 
 1720
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0022786 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 2899
embryo 02-04hr
 
 412
embryo 04-06hr
 
 566
embryo 06-08hr
 
 944
embryo 08-10hr
 
 801
embryo 10-12hr
 
 737
embryo 12-14hr
 
 404
embryo 14-16hr
 
 306
embryo 16-18hr
 
 218
embryo 18-20hr
 
 116
embryo 20-22hr
 
 103
embryo 22-24hr
 
 122
larva L1
 
 342
larva L2
 
 358
larva L3 12hr old
 
 342
larva L3 puffstage 1-2
 
 385
larva L3 puffstage 3-6
 
 470
larva L3 puffstage 7-9
 
 500
white prepupae new
 
 518
white prepupae 12hr
 
 628
white prepupae 24hr
 
 676
pupae 2d postWPP
 
 421
pupae 3d postWPP
 
 243
pupae 4d postWPP
 
 204
adult male 01day
 
 342
adult male 05day
 
 492
adult male 30day
 
 452
adult female 01day
 
 845
adult female 05day
 
 1694
adult female 30day
 
 1720
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2899)
embryo 02-04hr
 (412)
embryo 04-06hr
 (566)
embryo 06-08hr
 (944)
embryo 08-10hr
 (801)
embryo 10-12hr
 (737)
embryo 12-14hr
 (404)
embryo 14-16hr
 (306)
embryo 16-18hr
 (218)
embryo 18-20hr
 116
embryo 20-22hr
 103
embryo 22-24hr
 122
larva L1
 (342)
larva L2
 (358)
larva L3 12hr old
 (342)
larva L3 puffstage 1-2
 (385)
larva L3 puffstage 3-6
 (470)
larva L3 puffstage 7-9
 (500)
white prepupae new
 (518)
white prepupae 12hr
 (628)
white prepupae 24hr
 (676)
pupae 2d postWPP
 (421)
pupae 3d postWPP
 (243)
pupae 4d postWPP
 (204)
adult male 01day
 (342)
adult male 05day
 (492)
adult male 30day
 (452)
adult female 01day
 (845)
adult female 05day
 (1694)
adult female 30day
 (1720)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2899)
embryo 02-04hr
 
 412
embryo 04-06hr
 
 566
embryo 06-08hr
 
 944
embryo 08-10hr
 
 801
embryo 10-12hr
 
 737
embryo 12-14hr
 
 404
embryo 14-16hr
 
 306
embryo 16-18hr
 
 218
embryo 18-20hr
 
 116
embryo 20-22hr
 
 103
embryo 22-24hr
 
 122
larva L1
 
 342
larva L2
 
 358
larva L3 12hr old
 
 342
larva L3 puffstage 1-2
 
 385
larva L3 puffstage 3-6
 
 470
larva L3 puffstage 7-9
 
 500
white prepupae new
 
 518
white prepupae 12hr
 
 628
white prepupae 24hr
 
 676
pupae 2d postWPP
 
 421
pupae 3d postWPP
 
 243
pupae 4d postWPP
 
 204
adult male 01day
 
 342
adult male 05day
 
 492
adult male 30day
 
 452
adult female 01day
 
 845
adult female 05day
 1694
adult female 30day
 1720
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2899
embryo 02-04hr
 
 412
embryo 04-06hr
 
 566
embryo 06-08hr
 
 944
embryo 08-10hr
 
 801
embryo 10-12hr
 
 737
embryo 12-14hr
 
 404
embryo 14-16hr
 
 306
embryo 16-18hr
 
 218
embryo 18-20hr
 
 116
embryo 20-22hr
 
 103
embryo 22-24hr
 
 122
larva L1
 
 342
larva L2
 
 358
larva L3 12hr old
 
 342
larva L3 puffstage 1-2
 
 385
larva L3 puffstage 3-6
 
 470
larva L3 puffstage 7-9
 
 500
white prepupae new
 
 518
white prepupae 12hr
 
 628
white prepupae 24hr
 
 676
pupae 2d postWPP
 
 421
pupae 3d postWPP
 
 243
pupae 4d postWPP
 
 204
adult male 01day
 
 342
adult male 05day
 
 492
adult male 30day
 
 452
adult female 01day
 
 845
adult female 05day
 
 1694
adult female 30day
 
 1720
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2899
embryo 02-04hr
 
 412
embryo 04-06hr
 
 566
embryo 06-08hr
 
 944
embryo 08-10hr
 
 801
embryo 10-12hr
 
 737
embryo 12-14hr
 
 404
embryo 14-16hr
 
 306
embryo 16-18hr
 
 218
embryo 18-20hr
 
 116
embryo 20-22hr
 
 103
embryo 22-24hr
 
 122
larva L1
 
 342
larva L2
 
 358
larva L3 12hr old
 
 342
larva L3 puffstage 1-2
 
 385
larva L3 puffstage 3-6
 
 470
larva L3 puffstage 7-9
 
 500
white prepupae new
 
 518
white prepupae 12hr
 
 628
white prepupae 24hr
 
 676
pupae 2d postWPP
 
 421
pupae 3d postWPP
 
 243
pupae 4d postWPP
 
 204
adult male 01day
 
 342
adult male 05day
 
 492
adult male 30day
 
 452
adult female 01day
 
 845
adult female 05day
 
 1694
adult female 30day
 
 1720
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0022786


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0022786
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval/adult Malpighian tubules, larval salivary gland, adult ovary.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0022786 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 145.15
Larval Midgut
 
 83.4
Larval Hindgut
 
 70.2
Larval Malpighian Tubules
 
 110.7
Larval Fat Body
 
 76.7
Larval Salivary Gland
 
 101
Larval Trachea
 
 61.275
Larval Carcass
 
 74.125
Adult Head
 
 37.3
Adult Eye
 
 22.85
Adult Brain
 
 63.1
Adult Thoracic-Abdominal Ganglion
 
 51.2
Adult Crop
 
 51.7
Adult Midgut
 
 86.8
Adult Hindgut
 
 49.4
Adult Malpighian Tubules
 
 200.9
Adult Fat Body
 
 51.3
Adult Salivary Gland no informative data
Adult Heart
 
 24.65
Adult VirginFemale Spermatheca
 
 72.1
Adult InseminatedFemale Spermatheca
 
 66.6
Adult Ovary
 
 243.9
Adult Testis
 
 65.2
Adult Male Accessory Gland
 
 73.8
Adult Carcass
 
 45
Expression Level Scale
 None 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 145.15
Larval Midgut
 
 83.4
Larval Hindgut
 
 70.2
Larval Malpighian Tubules
 
 110.7
Larval Fat Body
 
 76.7
Larval Salivary Gland
 
 101
Larval Trachea
 
 61.275
Larval Carcass
 
 74.125
Adult Head
 
 37.3
Adult Eye
 
 22.85
Adult Brain
 
 63.1
Adult Thoracic-Abdominal Ganglion
 
 51.2
Adult Crop
 
 51.7
Adult Midgut
 
 86.8
Adult Hindgut
 
 49.4
Adult Malpighian Tubules
 
 200.9
Adult Fat Body
 
 51.3
Adult Salivary Gland no informative data
Adult Heart
 
 24.65
Adult VirginFemale Spermatheca
 
 72.1
Adult InseminatedFemale Spermatheca
 
 66.6
Adult Ovary
 
 243.9
Adult Testis
 
 65.2
Adult Male Accessory Gland
 
 73.8
Adult Carcass
 
 45
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 145.15
Larval Midgut
 
 83.4
Larval Hindgut
 
 70.2
Larval Malpighian Tubules
 
 110.7
Larval Fat Body
 
 76.7
Larval Salivary Gland
 
 101
Larval Trachea
 
 61.275
Larval Carcass
 
 74.125
Adult Head
 
 37.3
Adult Eye
 
 22.85
Adult Brain
 
 63.1
Adult Thoracic-Abdominal Ganglion
 
 51.2
Adult Crop
 
 51.7
Adult Midgut
 
 86.8
Adult Hindgut
 
 49.4
Adult Malpighian Tubules
 
 200.9
Adult Fat Body
 
 51.3
Adult Salivary Gland no informative data
Adult Heart
 
 24.65
Adult VirginFemale Spermatheca
 
 72.1
Adult InseminatedFemale Spermatheca
 
 66.6
Adult Ovary
 
 243.9
Adult Testis
 
 65.2
Adult Male Accessory Gland
 
 73.8
Adult Carcass
 
 45
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 145.15
Larval Midgut
 
 83.4
Larval Hindgut
 
 70.2
Larval Malpighian Tubules
 
 110.7
Larval Fat Body
 
 76.7
Larval Salivary Gland
 
 101
Larval Trachea
 
 61.275
Larval Carcass
 
 74.125
Adult Head
 
 37.3
Adult Eye
 
 22.85
Adult Brain
 
 63.1
Adult Thoracic-Abdominal Ganglion
 
 51.2
Adult Crop
 
 51.7
Adult Midgut
 
 86.8
Adult Hindgut
 
 49.4
Adult Malpighian Tubules
 
 200.9
Adult Fat Body
 
 51.3
Adult Salivary Gland no informative data
Adult Heart
 
 24.65
Adult VirginFemale Spermatheca
 
 72.1
Adult InseminatedFemale Spermatheca
 
 66.6
Adult Ovary
 
 243.9
Adult Testis
 
 65.2
Adult Male Accessory Gland
 
 73.8
Adult Carcass
 
 45
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0022786 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 145.15
Larval Midgut
 
 83.4
Larval Hindgut
 
 70.2
Larval Malpighian Tubules
 
 110.7
Larval Fat Body
 
 76.7
Larval Salivary Gland
 
 101
Larval Trachea
 
 61.275
Larval Carcass
 
 74.125
Adult Head
 
 37.3
Adult Eye
 
 22.85
Adult Brain
 
 63.1
Adult Thoracic-Abdominal Ganglion
 
 51.2
Adult Crop
 
 51.7
Adult Midgut
 
 86.8
Adult Hindgut
 
 49.4
Adult Malpighian Tubules
 
 200.9
Adult Fat Body
 
 51.3
Adult Salivary Gland no informative data
Adult Heart
 
 24.65
Adult VirginFemale Spermatheca
 
 72.1
Adult InseminatedFemale Spermatheca
 
 66.6
Adult Ovary
 
 243.9
Adult Testis
 
 65.2
Adult Male Accessory Gland
 
 73.8
Adult Carcass
 
 45
Expression Level Scale
 None 
 Low 
 Moderate 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 145.15
Larval Midgut
 
 83.4
Larval Hindgut
 
 70.2
Larval Malpighian Tubules
 
 110.7
Larval Fat Body
 
 76.7
Larval Salivary Gland
 
 101
Larval Trachea
 
 61.275
Larval Carcass
 
 74.125
Adult Head
 
 37.3
Adult Eye
 
 22.85
Adult Brain
 
 63.1
Adult Thoracic-Abdominal Ganglion
 
 51.2
Adult Crop
 
 51.7
Adult Midgut
 
 86.8
Adult Hindgut
 
 49.4
Adult Malpighian Tubules
 
 200.9
Adult Fat Body
 
 51.3
Adult Salivary Gland no informative data
Adult Heart
 
 24.65
Adult VirginFemale Spermatheca
 
 72.1
Adult InseminatedFemale Spermatheca
 
 66.6
Adult Ovary
 
 243.9
Adult Testis
 
 65.2
Adult Male Accessory Gland
 
 73.8
Adult Carcass
 
 45
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 145.15
Larval Midgut
 
 83.4
Larval Hindgut
 
 70.2
Larval Malpighian Tubules
 
 110.7
Larval Fat Body
 
 76.7
Larval Salivary Gland
 
 101
Larval Trachea
 
 61.275
Larval Carcass
 
 74.125
Adult Head
 
 37.3
Adult Eye
 
 22.85
Adult Brain
 
 63.1
Adult Thoracic-Abdominal Ganglion
 
 51.2
Adult Crop
 
 51.7
Adult Midgut
 
 86.8
Adult Hindgut
 
 49.4
Adult Malpighian Tubules
 
 200.9
Adult Fat Body
 
 51.3
Adult Salivary Gland no informative data
Adult Heart
 
 24.65
Adult VirginFemale Spermatheca
 
 72.1
Adult InseminatedFemale Spermatheca
 
 66.6
Adult Ovary
 
 243.9
Adult Testis
 
 65.2
Adult Male Accessory Gland
 
 73.8
Adult Carcass
 
 45
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 145.15
Larval Midgut
 
 83.4
Larval Hindgut
 
 70.2
Larval Malpighian Tubules
 
 110.7
Larval Fat Body
 
 76.7
Larval Salivary Gland
 
 101
Larval Trachea
 
 61.275
Larval Carcass
 
 74.125
Adult Head
 
 37.3
Adult Eye
 
 22.85
Adult Brain
 
 63.1
Adult Thoracic-Abdominal Ganglion
 
 51.2
Adult Crop
 
 51.7
Adult Midgut
 
 86.8
Adult Hindgut
 
 49.4
Adult Malpighian Tubules
 
 200.9
Adult Fat Body
 
 51.3
Adult Salivary Gland no informative data
Adult Heart
 
 24.65
Adult VirginFemale Spermatheca
 
 72.1
Adult InseminatedFemale Spermatheca
 
 66.6
Adult Ovary
 
 243.9
Adult Testis
 
 65.2
Adult Male Accessory Gland
 
 73.8
Adult Carcass
 
 45
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland no informative data
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 37.3
 
NA 
Eye
 
 22.85
 
NA 
Brain
 
 63.1
 
145.15 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 51.2
 
NA 
Crop
 
 51.7
 
83.4 
Midgut
 
 86.8
 
70.2 
Hindgut
 
 49.4
 
110.7 
Malpighian Tubules
 
 200.9
 
76.7 
Fat Body
 
 51.3
 
101 
Salivary Gland
 
 no informative data
 
NA 
Heart
 
 24.65
 
61.275 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 72.1
 
NA 
InseminatedFemale Spermatheca
 
 66.6
 
NA 
Ovary
 
 243.9
 
NA 
Testis
 
 65.2
 
NA 
Male Accessory Gland
 
 73.8
 
74.125 
Carcass
 
 45

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
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Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
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hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
male pronucleus & nuclear membrane | non-rescuable maternal effect
hide Classical Alleles ( 2 )
For All Classical Alleles Show

Allele of HiraClassMutagenStocksKnown lesion
Hira185bloss of function allele0 Yes
HiraHR10 Yes
hide Alleles Carried on Transgenic Constructs ( 8 )
For All Alleles Carried on Transgenic Constructs Show

Allele of HiraClassMutagenStocksKnown lesion
HiraGD42722 Yes
HiraGL002571 Yes
HiraKK1008141 Yes
Hira+tLa0 Yes
HiraHR1.T:Zzzz\FLAG0 Yes
Hirassm.T:Zzzz\FLAG0 Yes
HiraT:Zzzz\FLAG0 Yes
HiratLb0 Yes
hide Aneuploid Aberrations
Disrupted in
Not disrupted in
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Transgenic Constructs
Type of construct
Name
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Insertions
Type of insertions
Name
Expression data
hide Gene Ontology: Function, Process & Cellular Component ( 9 unique terms )
hide Terms Based on Experimental Evidence ( 7 terms )
Molecular Function
CV term
References
inferred from direct assay
(assigned by UniProtKB)
Biological Process
CV term
References
inferred from mutant phenotype
Cellular Component
CV term
References
inferred from direct assay
(assigned by UniProtKB)
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity with Saccharomyces HIR1
Biological Process
CV term
References
Cellular Component
CV term
References
non-traceable author statement
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Interacts with
Please look at the allele data for full details of the genetic interactions
Hira allele
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References
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InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 4 )
Bloomington
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 16 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
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Linkouts
DRSC - Results from RNAi screens.
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Called sesame (ssm) for Sperm Escaping Syngamy, A Maternal Effect.
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Source for database identity of
Source for database merge of
Source for merge of: Hira ssm
Additional comments
hide Other Comments
Wolbachia-induced cytoplasmic incompatibility (CI) is associated with decreased expression of Hira in male Drosophila and males mutated for Hira mimic the CI phenotype.
Mutation in Hira affects maternal histone incorporation in the male pronucleus.
Maternally provided Hira is required for a late stage of sperm chromatin re-modelling.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 11 )
Reported As
Symbol Synonym
Name Synonym
Drosophila hira homolog
 
Drosophila homolog of HIRA
Secondary FlyBase IDs
  • FBgn0027940
hide References ( 42 )
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hide Recent research papers ( 1 )
Zheng et al., 2011, PLoS ONE 6(4): e19512
Wolbachia-induced cytoplasmic incompatibility is associated with decreased hira expression in male Drosophila. [FBrf0213694]
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All reviews listed in FlyBase were published before 2010