FB2025_01 , released February 20, 2025
Gene: Dmel\Df31
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General Information
Symbol
Dmel\Df31
Species
D. melanogaster
Name
Decondensation factor 31
Annotation Symbol
CG2207
Feature Type
protein_coding_gene
FlyBase ID
FBgn0022893
Gene Model Status
Current
Stock Availability
17 publicly available
Gene Summary
Decondensation factor 31 (Df31) encodes a histone binding protein involved in nucleosome assembly. [Date last reviewed: 2019-09-12] (FlyBase Gene Snapshot)
All Summaries
Also Known As

anon1A4, DF 31, anon- EST:Posey126

Key Links
Genomic Location
Cytogenetic map
39E3-39E3
Sequence location
Recombination map
2-54
RefSeq locus
NT_033779 REGION:21626309..21629932
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
Gene Ontology (GO) Annotations (7 terms)
Molecular Function (1 term)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
enables histone binding
inferred from direct assay
(Crevel and Cotterill, 1995)
Terms Based on Predictions or Assertions (0 terms)
Biological Process (2 terms)
Terms Based on Experimental Evidence (2 terms)
CV Term
Evidence
References
involved_in chromatin organization
inferred from mutant phenotype
(Crevel et al., 2001)
involved_in nucleosome assembly
inferred from direct assay
(Crevel and Cotterill, 1995)
Terms Based on Predictions or Assertions (0 terms)
Cellular Component (4 terms)
Terms Based on Experimental Evidence (4 terms)
CV Term
Evidence
References
located_in chromatin
inferred from direct assay
(Crevel et al., 2001)
located_in cytoplasm
inferred from high throughput direct assay
(Lee et al., 2014)
located_in nucleus
inferred from high throughput direct assay
(Lee et al., 2014)
inferred from direct assay
(Rohrbaugh et al., 2013)
colocalizes_with polytene chromosome
inferred from direct assay
(Rohrbaugh et al., 2013)
Terms Based on Predictions or Assertions (0 terms)
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
    -
    Summaries
    Gene Snapshot
    Decondensation factor 31 (Df31) encodes a histone binding protein involved in nucleosome assembly. [Date last reviewed: 2019-09-12]
    Gene Model and Products
    Number of Transcripts
    3
    Number of Unique Polypeptides
    1

    Please see the JBrowse view of Dmel\Df31 for information on other features

    To submit a correction to a gene model please use the Contact FlyBase form

    Protein Domains (via Pfam)
    Isoform displayed:
    Pfam protein domains
    InterPro name
    classification
    start
    end
    Protein Domains (via SMART)
    Isoform displayed:
    SMART protein domains
    InterPro name
    classification
    start
    end
    Structure
    Protein 3D structure   (Predicted by AlphaFold)   (AlphaFold entry O16043)

    If you don't see a structure in the viewer, refresh your browser.
    Model Confidence:
    • Very high (pLDDT > 90)
    • Confident (90 > pLDDT > 70)
    • Low (70 > pLDDT > 50)
    • Very low (pLDDT < 50)

    AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

    Experimentally Determined Structures
    Crossreferences
    Comments on Gene Model

    Low-frequency RNA-Seq exon junction(s) not annotated.

    Gene model reviewed during 5.46

    Transcript Data
    Annotated Transcripts
    Name
    FlyBase ID
    RefSeq ID
    Length (nt)
    Assoc. CDS (aa)
    Df31-RA
    FBtr0085919
    NM_078890
    1532
    183
    Df31-RB
    FBtr0085920
    NM_165388
    1424
    183
    Df31-RF
    FBtr0100293
    NM_001032217
    2083
    183
    Additional Transcript Data and Comments
    Reported size (kB)
    Comments
    External Data
    Crossreferences
    Polypeptide Data
    Annotated Polypeptides
    Name
    FlyBase ID
    Predicted MW (kDa)
    Length (aa)
    Theoretical pI
    UniProt
    RefSeq ID
    GenBank
    Df31-PA
    FBpp0085273
    18.8
    183
    3.90
    O16043
    NP_523614
    AAF57222
    Df31-PB
    FBpp0085274
    18.8
    183
    3.90
    O16043
    NP_724350
    AAN11130
    Df31-PF
    FBpp0099688
    18.8
    183
    3.90
    O16043
    NP_001027388
    AAZ66584
    Polypeptides with Identical Sequences

    The group(s) of polypeptides indicated below share identical sequence to each other.

    183 aa isoforms: Df31-PA, Df31-PB, Df31-PF
    Additional Polypeptide Data and Comments
    Reported size (kDa)

    31 (kD observed)

    (Crevel and Cotterill, 1995)
    Comments
    External Data
    Crossreferences
    Linkouts
    Sequences Consistent with the Gene Model
    Nucleotide / Polypeptide Records
     
    UniProt
    Mapped Features

    Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Df31 using the Feature Mapper tool.

    External Data
    Crossreferences
    Linkouts
    Expression Data
    Testis-specificity index

    The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

    -0.60

    Transcript Expression
    Polypeptide Expression
    Additional Descriptive Data
    Marker for
     
    Subcellular Localization
    CV Term
    Evidence
    References
    located_in chromatin
    inferred from direct assay
    (Crevel et al., 2001)
    located_in cytoplasm
    inferred from high throughput direct assay
    (Lee et al., 2014)
    located_in nucleus
    inferred from high throughput direct assay
    (Lee et al., 2014)
    inferred from direct assay
    (Rohrbaugh et al., 2013)
    colocalizes_with polytene chromosome
    inferred from direct assay
    (Rohrbaugh et al., 2013)
    Expression Deduced from Reporters
    High-Throughput Expression Data
    Associated Tools

    JBrowse - Visual display of RNA-Seq signals

    View Dmel\Df31 in JBrowse
    RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
    Bulk Downloads
    RNA-Seq RPKM values for all genes
    Reference
    See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
    Developmental Proteome: Life Cycle
    Developmental Proteome: Embryogenesis
    External Data and Images
    Linkouts
    BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
    DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
    EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
    FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
    FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
    Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
    Flygut - An atlas of the Drosophila adult midgut
    Images
    FlyExpress - Embryonic expression images (BDGP data)
    • Stages(s) 7-8
    • Stages(s) 11-12
    • Stages(s) 13-16
    FlyBase Wiki
    Image Based Resources
    Alleles, Insertions, Transgenic Constructs, and Aberrations
    Classical and Insertion Alleles ( 17 )
    For All Classical and Insertion Alleles Show
     
    Other relevant insertions
    Transgenic Constructs ( 10 )
    For All Alleles Carried on Transgenic Constructs Show
    Transgenic constructs containing/affecting coding region of Df31
    Transgenic constructs containing regulatory region of Df31
    Aberrations (Deficiencies and Duplications) ( 8 )
    Variants
    Variant Molecular Consequences
    Alleles Representing Disease-Implicated Variants
    Phenotypes
    Orthologs
    Downloads
    Download All DIOPT Orthologs
    Human Orthologs (via DIOPT v9.1)
    Species\Gene Symbol
    Score
    Best Score
    Best Reverse Score
    Source
    Compara
    Domainoid
    eggNOG
    Hieranoid
    Homologene
    Inparanoid
    OMA
    OrthoDB
    OrthoFinder
    OrthoInspector
    orthoMCL
    Panther
    Phylome
    SonicParanoid
    Alignment
    Complementation?
    Transgene?
    Homo sapiens (Human) (0)
    Model Organism Orthologs (via DIOPT v9.1)
    Species\Gene Symbol
    Score
    Best Score
    Best Reverse Score
    Source
    Compara
    Domainoid
    eggNOG
    Hieranoid
    Homologene
    Inparanoid
    OMA
    OrthoDB
    OrthoFinder
    OrthoInspector
    orthoMCL
    Panther
    Phylome
    SonicParanoid
    Alignment
    Complementation?
    Transgene?
    Rattus norvegicus (Norway rat) (0)
    Mus musculus (laboratory mouse) (0)
    Xenopus tropicalis (Western clawed frog) (0)
    Danio rerio (Zebrafish) (0)
    Caenorhabditis elegans (Nematode, roundworm) (0)
    Anopheles gambiae (African malaria mosquito) (0)
    Arabidopsis thaliana (thale-cress) (0)
    Saccharomyces cerevisiae (Brewer's yeast) (0)
    Schizosaccharomyces pombe (Fission yeast) (0)
    Escherichia coli (enterobacterium) (0)
    Other Organism Orthologs (via OrthoDB)
    Data provided directly from OrthoDB:Df31. Refer to their site for version information.
    Paralogs
    Downloads
    Download All DIOPT Paralogs
    Paralogs (via DIOPT v9.1)
    Human Disease Associations
    FlyBase Human Disease Model Reports
      Disease Ontology (DO) Annotations
      Models Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Evidence
      References
      Potential Models Based on Orthology ( 0 )
      Human Ortholog
      Disease
      Evidence
      References
      Modifiers Based on Experimental Evidence ( 0 )
      Allele
      Disease
      Interaction
      References
      Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)
      Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
      Homo sapiens (Human)
      Gene name
      Score
      OMIM
      OMIM Phenotype
      DO term
      Complementation?
      Transgene?
      Functional Complementation Data
      Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
      Interactions
      Summary of Physical Interactions
      esyN Network Diagram
      Show neighbor-neighbor interactions:
      Show/hide secondary interactors 
      (data from AllianceMine provided by esyN)
      Select Layout:
      Legend:
      Protein
      RNA
      Selected Interactor(s)
      Other Interaction Browsers
      View in FlyBase Interactions Browser   View in MIST tool (external link)
      Please see the Physical Interaction reports below for full details
      protein-protein
      Physical Interaction
      Assay
      References
      Df31 - 14-3-3ε
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - ATPsynβ
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Act57B
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Akap200
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Ald1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - AnxB10
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Ar1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Ar2
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Arfrp1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Asciz
      anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
      (Rhee et al., 2014)
      Df31 - Bacc
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG10214
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG10265
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG10657
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG11267
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG11771
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG1236
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG1309
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG13887
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG13893
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG13983
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG14715
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG1532
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG17124
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG18787
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG1910
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG2004
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG2852
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG30339
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG4119
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG4598
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG5174
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG7049
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG7054
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG8117
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG8891
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - CG8993
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Calr
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Chd64
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Cyp1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Dim1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Dronc
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - ERp60
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Eno
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Fim
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Fkbp12
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Fkbp14
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - GstO3
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Gtpx
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - HINT1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Hen1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Hsp110
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Hsp60A
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Hsp83
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Inos
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Mdh2
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Moe
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Nacα
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Nlp
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Nt5b
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Ntf-2
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - PCNA
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - PHDP
      anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
      (Rhee et al., 2014)
      Df31 - Pdi
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Pgam1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Pgd
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Prx6c
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Rae1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - RhoGDI
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Sh3β
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Snx3
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Sod1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Ssb-c31a
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Stip1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Sumo
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - TER94
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Tctp
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Tkt
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - TpnC25D
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Trx2
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Trxr1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - Uch
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - awd
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - cPges
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - capt
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - chic
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - cib
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - dod
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - dpn
      anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
      (Rhee et al., 2014)
      Df31 - eEF1δ
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - eEF2
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - eEF5
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - fabp
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - loqs
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - regucalcin
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - scf
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - scu
      experimental knowledge based
      (Guruharsha et al., 2011)
      Df31 - twi
      anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
      (Rhee et al., 2014)
      Df31 - zip
      experimental knowledge based
      (Guruharsha et al., 2011)
      RNA-protein
      Physical Interaction
      Assay
      References
      Df31 - snoRNA:CD30b
      anti tag coimmunoprecipitation, reverse transcription pcr, microscale thermophoresis
      (Schubert et al., 2012)
      Df31 - snoRNA:CD44
      microscale thermophoresis, anti tag coimmunoprecipitation, reverse transcription pcr
      (Schubert et al., 2012)
      Summary of Genetic Interactions
      esyN Network Diagram
      Other Interaction Browsers
      Starting gene(s)
      Interaction type
      Interacting gene(s)
      Reference
      Starting gene(s)
      Interaction type
      Interacting gene(s)
      Reference
      External Data
      Linkouts
      BioGRID - A database of protein and genetic interactions.
      DroID - A comprehensive database of gene and protein interactions.
      MIST (protein-protein) - An integrated Molecular Interaction Database
      Pathways
      Signaling Pathways (FlyBase)
      Metabolic Pathways
      FlyBase
      External Links
      External Data
      Linkouts
      Class of Gene
      Genomic Location and Detailed Mapping Data
      Chromosome (arm)
      2L
      Recombination map
      2-54
      Cytogenetic map
      39E3-39E3
      Sequence location
      FlyBase Computed Cytological Location
      Cytogenetic map
      Evidence for location
      39E3-39E3
      Limits computationally determined from genome sequence between P{PZ}l(2)05095a05095a and P{lacW}Df31k05815
      Experimentally Determined Cytological Location
      Cytogenetic map
      Notes
      References
      39E-39E
      (determined by in situ hybridisation)
      (Crevel et al., 2001)
      39E3-39E4
      (determined by in situ hybridisation)
      (Spradling et al., 1999)
      39E3-39E4
      (BDGP Project Members, 1994-1999)
      Experimentally Determined Recombination Data
      Location

      2-54

      (FlyBase, 2016)

      2-54.6

      (Comeron et al., 2012)
      Left of (cM)
      Right of (cM)
      Notes
      Stocks and Reagents
      Stocks (17)
      Genomic Clones (19)
      cDNA Clones (468)
       

      Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

      cDNA clones, fully sequenced
      BDGP DGC clones
      Other clones
      Drosophila Genomics Resource Center cDNA clones

      For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

      cDNA Clones, End Sequenced (ESTs)
      BDGP DGC clones
      Other clones
      RNAi and Array Information
      Linkouts
      DRSC - Results frm RNAi screens
      Antibody Information
      Laboratory Generated Antibodies
       

      polyclonal

      (Rohrbaugh et al., 2013)

      monoclonal

      (Schubert et al., 2012)
      Commercially Available Antibodies
       
      Cell Line Information
      Publicly Available Cell Lines
       
        Other Stable Cell Lines
         
          Other Comments

          Host gene for maternally inherited stable intronic sequence RNA (sisRNA).

          (Tay and Pek, 2017)

          Three candidate stable intronic sequence RNAs (sisRNAs) identified within CDS of this gene.

          (Pek et al., 2015)

          DNA-protein interactions: genome-wide binding profile assayed for Df31 protein in Kc167 cells; see Chromatin_types_NKI collection report. Individual protein-binding experiments listed under "Samples" at GEO_GSE22069 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22069).

          (Filion et al., 2010)

          Expression is enriched in embryonic gonads.

          (Shigenobu et al., 2006)

          Df31 protein is involved in chromatin remodeling.

          (Berrios and Fisher, 1995)

          A heat stable phosphoprotein that decondenses sperm DNA by displacement of sperm-specific proteins and is able to facilitate nucleosome loading on decondensed sperm DNA.

          (Crevel and Cotterill, 1995)
          Relationship to Other Genes
          Source for database merge of

          Source for merge of: anon- EST:fe1A4 l(2)k05815

          (Spradling et al., 1999)

          Source for merge of: l(2)k05815 BEST:LD04967

          (Bayraktaroglu, 2000.11.2)

          Source for merge of: Df31 anon- EST:Posey126

          (FlyBase Genome Annotators, 2005)

          Source for merge of: Df31 anon- EST:Liang-1.46

          (FlyBase, 1996-)

          Source for merge of: Df31 anon-WO0153538.53

          (FlyBase, 1996-)
          Additional comments

          Source for merge of Df31 anon- EST:Liang-1.46 was sequence comparison ( date:030722 ).

          (FlyBase, 1996-)

          Source for merge of Df31 anon-WO0153538.53 was sequence comparison ( date:051113 ).

          (FlyBase, 1996-)
          Nomenclature History
          Source for database identify of

          Source for identity of: l(2)k05815 CG2207

          (Deng, 1999.11)
          Nomenclature comments
          Etymology
          Synonyms and Secondary IDs (16)
          Reported As
          Symbol Synonym
          BEST:LD04967
          CG2207
          (National Institute of Genetics Fly Stocks, 2022-, Tay and Pek, 2017, Pek et al., 2015, Ni et al., 2011.7.19, Anholt and Williams, 2010, Ni et al., 2010.12.1, Keleman et al., 2009.8.5, Perkins et al., 2009, Haussmann et al., 2008, Szöllösi et al., 2008, Quinones-Coello, 2007, Han et al., 2003, Brody et al., 2002, Stempfl et al., 2002, Morin et al., 2001, Seong et al., 2001)
          DF 31
          (Ridgway and Almouzni, 2001, Ridgway and Almouzni, 2000)
          DF31
          (Känel et al., 2022, Filion et al., 2010, Szöllösi et al., 2008, Ito et al., 1997, Crevel and Cotterill, 1995)
          Df31
          (Heigwer et al., 2023, Känel et al., 2022, National Institute of Genetics Fly Stocks, 2022-, Hall et al., 2021, Lauria Sneideman and Meller, 2021, Hung et al., 2020, Overton et al., 2020, Wang and Spradling, 2020, Zhang et al., 2018, Hsu and Drummond-Barbosa, 2017, Tay and Pek, 2017, Transgenic RNAi Project members, 2017-, Ables et al., 2016, Sarov et al., 2016, Dent et al., 2015, Pek et al., 2015, Ashwal-Fluss et al., 2014, Lee et al., 2014, Kwon et al., 2013, Rohrbaugh et al., 2013, Japanese National Institute of Genetics, 2012.5.21, Ardehali et al., 2011, Franco et al., 2011, Morris and Spradling, 2011, Singer and Gall, 2011, Kong et al., 2010, Tan et al., 2009, McElroy et al., 2008, Szöllösi et al., 2008, Buszczak et al., 2007, Guillebault and Cotterill, 2007, Magalhaes et al., 2007, Quinones-Coello, 2007, Shigenobu et al., 2006, Domazet-Loso and Tautz, 2003)
          LD04967
          (Toba et al., 1999)
          anon-EST:Liang-1.46
          anon-EST:Posey126
          (Ashburner, 2004.6.30)
          anon-EST:fe1A4
          anon-WO0153538.53
          anon1A4
          (Brody et al., 2002, Stempfl et al., 2002, Spradling et al., 1999, Schmid, 1997.5.30)
          clone 1.46
          (Liang and Biggin, 1998)
          l(2)k05815
          Name Synonyms
          Chromatin decondensation factor 31
          (Sabino et al., 2015)
          Decondensation factor 31
          (Rohrbaugh et al., 2013, Morris and Spradling, 2011, Singer and Gall, 2011, Carpenter et al., 2009, Szöllösi et al., 2008, Crevel and Cotterill, 1995)
          anon-fast-evolving-1A4
          Secondary FlyBase IDs
          • FBgn0015041
          • FBgn0022155
          • FBgn0022348
          • FBgn0025987
          • FBgn0026586
          • FBgn0027759
          • FBgn0045899
          Datasets (1)
          Study focus (1)
          Experimental Role
          Project
          Project Type
          Title
          • transgene_used
          FBGSE22069
          Protein profiling reveals five principal chromatin types in Drosophila cells.
          Study result (0)
          Result
          Result Type
          Title
          External Crossreferences and Linkouts ( 50 )
          Sequence Crossreferences
          NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
          GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
          GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
          RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
          UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.
          UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
          Other crossreferences
          AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.
          BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
          DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
          EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
          FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
          FlyMine - An integrated database for Drosophila genomics
          KEGG Genes - Molecular building blocks of life in the genomic space.
          MARRVEL_MODEL - MARRVEL (model organism gene)
          Linkouts
          BioGRID - A database of protein and genetic interactions.
          Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
          DroID - A comprehensive database of gene and protein interactions.
          DRSC - Results frm RNAi screens
          FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
          FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
          Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
          Flygut - An atlas of the Drosophila adult midgut
          MIST (protein-protein) - An integrated Molecular Interaction Database
          References (101)