Gene Dmel\Df31

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General Information

Symbol

Dmel\Df31

Species

D. melanogaster

Name

Decondensation factor 31

Annotation symbol

CG2207

Feature type

protein_coding_gene

FlyBase ID

FBgn0022893

Gene Model Status

Current

Stock availability

11 publicly available

Also Known As

anon1A4, DF 31

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

39E3-39E3

Sequence location

2L:21,626,309..21,629,932 [-]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

The gene Decondensation factor 31 is referred to in FlyBase by the symbol Dmel\Df31 (CG2207, FBgn0022893). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: histone binding. There is experimental evidence that it is involved in the biological process: chromatin organization; nucleosome assembly. 21 alleles are reported. The phenotype of these alleles is annotated with: chromatin. It has 3 annotated transcripts and 3 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval/adult hindgut, larval fat body, larval salivary gland, larval trachea, adult ovary, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult thoracico-abdominal ganglion, larval/adult midgut, larval/adult Malpighian tubules, adult heart, adult fat body, adult salivary gland, adult spermathecae, adult testis, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1641153_a_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of Df31. Gene sequence location is 2L:21626309..21629932.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

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Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

39E3-39E3

Limits computationally determined from genome sequence between P{PZ}l(2)05095a^05095a and P{lacW}Df31^k05815

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

39E-39E

(determined by in situ hybridisation)

(Crevel et al., 2001)

39E3-39E4

(determined by in situ hybridisation)

(Spradling et al., 1999)

39E3-39E4

(BDGP Project Members, 1994-1999)

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\Df31 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.46

Low-frequency RNA-Seq exon junction(s) not annotated.

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

Df31-RA

FBtr0085919

NM_078890

1532

183

Df31-RB

FBtr0085920

NM_165388

1424

183

Df31-RF

FBtr0100293

NM_001032217

2083

183

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

Df31-PA

FBpp0085273

18.8

183

3.90

NP_523614

AAF57222

Df31-PB

FBpp0085274

18.8

183

3.90

NP_724350

AAN11130

Df31-PF

FBpp0099688

18.8

183

3.90

NP_001027388

AAZ66584

Additional Polypeptide Data & Comments

Reported size (kDa)

31 (kD observed)

(Crevel and Cotterill, 1995)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

O16043

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 3

organism

(Fisher et al., 2012)

Comment:maternally deposited

embryonic stage 11 -- 12

central brain primordium

(Fisher et al., 2012)

organism | ubiquitous

(Fisher et al., 2012)

ventral nerve cord primordium

(Fisher et al., 2012)

embryonic stage 13 -- 16

embryonic brain

(Fisher et al., 2012)

embryonic/larval nervous system

(Fisher et al., 2012)

organism | ubiquitous

(Fisher et al., 2012)

sensory nervous system primordium

(Fisher et al., 2012)

ventral nerve cord

(Fisher et al., 2012)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

chromatin

inferred from direct assay

(Crevel et al., 2001)

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval/adult hindgut, larval fat body, larval salivary gland, larval trachea, adult ovary, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult thoracico-abdominal ganglion, larval/adult midgut, larval/adult Malpighian tubules, adult heart, adult fat body, adult salivary gland, adult spermathecae, adult testis, adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		2676.525
Larval Midgut		431.5
Larval Hindgut		1787
Larval Malpighian Tubules		352.9
Larval Fat Body		920.1
Larval Salivary Gland		922
Larval Trachea		2414.575
Larval Carcass		1624.525
Adult Head		384.4
Adult Eye		286.55
Adult Brain		558.6
Adult Thoracic-Abdominal Ganglion		290.1
Adult Crop		939.5
Adult Midgut		292.2
Adult Hindgut		501.3
Adult Malpighian Tubules		139.2
Adult Fat Body		158.4
Adult Salivary Gland		145.2
Adult Heart		195.625
Adult VirginFemale Spermatheca		214.2
Adult InseminatedFemale Spermatheca		224.9
Adult Ovary		2556.4
Adult Testis		101.8
Adult Male Accessory Gland		92.2
Adult Carcass		241.1
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		(2676.525)
Larval Midgut		431.5
Larval Hindgut		(1787)
Larval Malpighian Tubules		352.9
Larval Fat Body		(920.1)
Larval Salivary Gland		(922)
Larval Trachea		(2414.575)
Larval Carcass		(1624.525)
Adult Head		384.4
Adult Eye		286.55
Adult Brain		(558.6)
Adult Thoracic-Abdominal Ganglion		290.1
Adult Crop		(939.5)
Adult Midgut		292.2
Adult Hindgut		501.3
Adult Malpighian Tubules		139.2
Adult Fat Body		158.4
Adult Salivary Gland		145.2
Adult Heart		195.625
Adult VirginFemale Spermatheca		214.2
Adult InseminatedFemale Spermatheca		224.9
Adult Ovary		(2556.4)
Adult Testis		101.8
Adult Male Accessory Gland		92.2
Adult Carcass		241.1
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		(2676.525)
Larval Midgut		431.5
Larval Hindgut		(1787)
Larval Malpighian Tubules		352.9
Larval Fat Body		920.1
Larval Salivary Gland		922
Larval Trachea		(2414.575)
Larval Carcass		(1624.525)
Adult Head		384.4
Adult Eye		286.55
Adult Brain		558.6
Adult Thoracic-Abdominal Ganglion		290.1
Adult Crop		939.5
Adult Midgut		292.2
Adult Hindgut		501.3
Adult Malpighian Tubules		139.2
Adult Fat Body		158.4
Adult Salivary Gland		145.2
Adult Heart		195.625
Adult VirginFemale Spermatheca		214.2
Adult InseminatedFemale Spermatheca		224.9
Adult Ovary		(2556.4)
Adult Testis		101.8
Adult Male Accessory Gland		92.2
Adult Carcass		241.1
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		2676.525
Larval Midgut		431.5
Larval Hindgut		1787
Larval Malpighian Tubules		352.9
Larval Fat Body		920.1
Larval Salivary Gland		922
Larval Trachea		2414.575
Larval Carcass		1624.525
Adult Head		384.4
Adult Eye		286.55
Adult Brain		558.6
Adult Thoracic-Abdominal Ganglion		290.1
Adult Crop		939.5
Adult Midgut		292.2
Adult Hindgut		501.3
Adult Malpighian Tubules		139.2
Adult Fat Body		158.4
Adult Salivary Gland		145.2
Adult Heart		195.625
Adult VirginFemale Spermatheca		214.2
Adult InseminatedFemale Spermatheca		224.9
Adult Ovary		2556.4
Adult Testis		101.8
Adult Male Accessory Gland		92.2
Adult Carcass		241.1
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		2676.525
Larval Midgut		431.5
Larval Hindgut		1787
Larval Malpighian Tubules		352.9
Larval Fat Body		920.1
Larval Salivary Gland		922
Larval Trachea		2414.575
Larval Carcass		1624.525
Adult Head		384.4
Adult Eye		286.55
Adult Brain		558.6
Adult Thoracic-Abdominal Ganglion		290.1
Adult Crop		939.5
Adult Midgut		292.2
Adult Hindgut		501.3
Adult Malpighian Tubules		139.2
Adult Fat Body		158.4
Adult Salivary Gland		145.2
Adult Heart		195.625
Adult VirginFemale Spermatheca		214.2
Adult InseminatedFemale Spermatheca		224.9
Adult Ovary		2556.4
Adult Testis		101.8
Adult Male Accessory Gland		92.2
Adult Carcass		241.1
Expression Level Scale		None Low Moderate High Very high

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		(2676.525)
Larval Midgut		431.5
Larval Hindgut		(1787)
Larval Malpighian Tubules		352.9
Larval Fat Body		(920.1)
Larval Salivary Gland		(922)
Larval Trachea		(2414.575)
Larval Carcass		(1624.525)
Adult Head		384.4
Adult Eye		286.55
Adult Brain		558.6
Adult Thoracic-Abdominal Ganglion		290.1
Adult Crop		(939.5)
Adult Midgut		292.2
Adult Hindgut		501.3
Adult Malpighian Tubules		139.2
Adult Fat Body		158.4
Adult Salivary Gland		145.2
Adult Heart		195.625
Adult VirginFemale Spermatheca		214.2
Adult InseminatedFemale Spermatheca		224.9
Adult Ovary		(2556.4)
Adult Testis		101.8
Adult Male Accessory Gland		92.2
Adult Carcass		241.1
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		(2676.525)
Larval Midgut		431.5
Larval Hindgut		(1787)
Larval Malpighian Tubules		352.9
Larval Fat Body		920.1
Larval Salivary Gland		922
Larval Trachea		(2414.575)
Larval Carcass		1624.525
Adult Head		384.4
Adult Eye		286.55
Adult Brain		558.6
Adult Thoracic-Abdominal Ganglion		290.1
Adult Crop		939.5
Adult Midgut		292.2
Adult Hindgut		501.3
Adult Malpighian Tubules		139.2
Adult Fat Body		158.4
Adult Salivary Gland		145.2
Adult Heart		195.625
Adult VirginFemale Spermatheca		214.2
Adult InseminatedFemale Spermatheca		224.9
Adult Ovary		(2556.4)
Adult Testis		101.8
Adult Male Accessory Gland		92.2
Adult Carcass		241.1
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		2676.525
Larval Midgut		431.5
Larval Hindgut		1787
Larval Malpighian Tubules		352.9
Larval Fat Body		920.1
Larval Salivary Gland		922
Larval Trachea		2414.575
Larval Carcass		1624.525
Adult Head		384.4
Adult Eye		286.55
Adult Brain		558.6
Adult Thoracic-Abdominal Ganglion		290.1
Adult Crop		939.5
Adult Midgut		292.2
Adult Hindgut		501.3
Adult Malpighian Tubules		139.2
Adult Fat Body		158.4
Adult Salivary Gland		145.2
Adult Heart		195.625
Adult VirginFemale Spermatheca		214.2
Adult InseminatedFemale Spermatheca		224.9
Adult Ovary		2556.4
Adult Testis		101.8
Adult Male Accessory Gland		92.2
Adult Carcass		241.1
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	384.4
NA	Eye	286.55
NA	Brain	558.6
2676.525	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	290.1
NA	Crop	939.5
431.5	Midgut	292.2
1787	Hindgut	501.3
352.9	Malpighian Tubules	139.2
920.1	Fat Body	158.4
922	Salivary Gland	145.2
NA	Heart	195.625
2414.575	Trachea	NA
NA	VirginFemale Spermatheca	214.2
NA	InseminatedFemale Spermatheca	224.9
NA	Ovary	2556.4
NA	Testis	101.8
NA	Male Accessory Gland	92.2
1624.525	Carcass	241.1

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		794
central nervous system, larvae L3		1204
central nervous system, pupae P8		339
head, virgin 1-day female		44
head, virgin 4-day female		33
head, virgin 20-day female		18
head, mated 1-day female		40
head, mated 4-day female		25
head, mated 20-day female		30
head, mated 1-day male		48
head, mated 4-day male		42
head, mated 20-day male		36
salivary gland, larvae L3 wandering		18
salivary gland, white prepupae		75
digestive system, larvae L3 wandering		134
digestive system, 1-day adult		30
digestive system, 4-day adult		53
digestive system, 20-day adult		35
fat body, larvae L3 wandering		41
fat body, white prepupae		146
fat body, pupae P8		210
carcass, larvae L3 wandering		744
carcass, 1-day adult		38
carcass, 4-day adult		71
carcass, 20-day adult		49
ovary, virgin 4-day female		694
ovary, mated 4-day female		739
testis, mated 4-day male		14
accessory gland, mated 4-day male		33
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(794)
central nervous system, larvae L3		(1204)
central nervous system, pupae P8		(339)
head, virgin 1-day female		(44)
head, virgin 4-day female		(33)
head, virgin 20-day female		18
head, mated 1-day female		(40)
head, mated 4-day female		25
head, mated 20-day female		(30)
head, mated 1-day male		(48)
head, mated 4-day male		(42)
head, mated 20-day male		(36)
salivary gland, larvae L3 wandering		18
salivary gland, white prepupae		(75)
digestive system, larvae L3 wandering		(134)
digestive system, 1-day adult		(30)
digestive system, 4-day adult		(53)
digestive system, 20-day adult		(35)
fat body, larvae L3 wandering		(41)
fat body, white prepupae		(146)
fat body, pupae P8		(210)
carcass, larvae L3 wandering		(744)
carcass, 1-day adult		(38)
carcass, 4-day adult		(71)
carcass, 20-day adult		(49)
ovary, virgin 4-day female		(694)
ovary, mated 4-day female		(739)
testis, mated 4-day male		14
accessory gland, mated 4-day male		(33)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(794)
central nervous system, larvae L3		(1204)
central nervous system, pupae P8		(339)
head, virgin 1-day female		44
head, virgin 4-day female		33
head, virgin 20-day female		18
head, mated 1-day female		40
head, mated 4-day female		25
head, mated 20-day female		30
head, mated 1-day male		48
head, mated 4-day male		42
head, mated 20-day male		36
salivary gland, larvae L3 wandering		18
salivary gland, white prepupae		75
digestive system, larvae L3 wandering		(134)
digestive system, 1-day adult		30
digestive system, 4-day adult		53
digestive system, 20-day adult		35
fat body, larvae L3 wandering		41
fat body, white prepupae		(146)
fat body, pupae P8		(210)
carcass, larvae L3 wandering		(744)
carcass, 1-day adult		38
carcass, 4-day adult		71
carcass, 20-day adult		49
ovary, virgin 4-day female		(694)
ovary, mated 4-day female		(739)
testis, mated 4-day male		14
accessory gland, mated 4-day male		33
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		794
central nervous system, larvae L3		1204
central nervous system, pupae P8		339
head, virgin 1-day female		44
head, virgin 4-day female		33
head, virgin 20-day female		18
head, mated 1-day female		40
head, mated 4-day female		25
head, mated 20-day female		30
head, mated 1-day male		48
head, mated 4-day male		42
head, mated 20-day male		36
salivary gland, larvae L3 wandering		18
salivary gland, white prepupae		75
digestive system, larvae L3 wandering		134
digestive system, 1-day adult		30
digestive system, 4-day adult		53
digestive system, 20-day adult		35
fat body, larvae L3 wandering		41
fat body, white prepupae		146
fat body, pupae P8		210
carcass, larvae L3 wandering		744
carcass, 1-day adult		38
carcass, 4-day adult		71
carcass, 20-day adult		49
ovary, virgin 4-day female		694
ovary, mated 4-day female		739
testis, mated 4-day male		14
accessory gland, mated 4-day male		33
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		794
central nervous system, larvae L3		1204
central nervous system, pupae P8		339
head, virgin 1-day female		44
head, virgin 4-day female		33
head, virgin 20-day female		18
head, mated 1-day female		40
head, mated 4-day female		25
head, mated 20-day female		30
head, mated 1-day male		48
head, mated 4-day male		42
head, mated 20-day male		36
salivary gland, larvae L3 wandering		18
salivary gland, white prepupae		75
digestive system, larvae L3 wandering		134
digestive system, 1-day adult		30
digestive system, 4-day adult		53
digestive system, 20-day adult		35
fat body, larvae L3 wandering		41
fat body, white prepupae		146
fat body, pupae P8		210
carcass, larvae L3 wandering		744
carcass, 1-day adult		38
carcass, 4-day adult		71
carcass, 20-day adult		49
ovary, virgin 4-day female		694
ovary, mated 4-day female		739
testis, mated 4-day male		14
accessory gland, mated 4-day male		33
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(794)
central nervous system, larvae L3		(1204)
central nervous system, pupae P8		(339)
head, virgin 1-day female		(44)
head, virgin 4-day female		(33)
head, virgin 20-day female		18
head, mated 1-day female		(40)
head, mated 4-day female		25
head, mated 20-day female		30
head, mated 1-day male		(48)
head, mated 4-day male		(42)
head, mated 20-day male		(36)
salivary gland, larvae L3 wandering		18
salivary gland, white prepupae		(75)
digestive system, larvae L3 wandering		(134)
digestive system, 1-day adult		30
digestive system, 4-day adult		(53)
digestive system, 20-day adult		(35)
fat body, larvae L3 wandering		(41)
fat body, white prepupae		(146)
fat body, pupae P8		(210)
carcass, larvae L3 wandering		(744)
carcass, 1-day adult		(38)
carcass, 4-day adult		(71)
carcass, 20-day adult		(49)
ovary, virgin 4-day female		(694)
ovary, mated 4-day female		(739)
testis, mated 4-day male		14
accessory gland, mated 4-day male		(33)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		(794)
central nervous system, larvae L3		(1204)
central nervous system, pupae P8		(339)
head, virgin 1-day female		44
head, virgin 4-day female		33
head, virgin 20-day female		18
head, mated 1-day female		40
head, mated 4-day female		25
head, mated 20-day female		30
head, mated 1-day male		48
head, mated 4-day male		42
head, mated 20-day male		36
salivary gland, larvae L3 wandering		18
salivary gland, white prepupae		75
digestive system, larvae L3 wandering		134
digestive system, 1-day adult		30
digestive system, 4-day adult		53
digestive system, 20-day adult		35
fat body, larvae L3 wandering		41
fat body, white prepupae		(146)
fat body, pupae P8		(210)
carcass, larvae L3 wandering		(744)
carcass, 1-day adult		38
carcass, 4-day adult		71
carcass, 20-day adult		49
ovary, virgin 4-day female		(694)
ovary, mated 4-day female		(739)
testis, mated 4-day male		14
accessory gland, mated 4-day male		33
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		794
central nervous system, larvae L3		1204
central nervous system, pupae P8		339
head, virgin 1-day female		44
head, virgin 4-day female		33
head, virgin 20-day female		18
head, mated 1-day female		40
head, mated 4-day female		25
head, mated 20-day female		30
head, mated 1-day male		48
head, mated 4-day male		42
head, mated 20-day male		36
salivary gland, larvae L3 wandering		18
salivary gland, white prepupae		75
digestive system, larvae L3 wandering		134
digestive system, 1-day adult		30
digestive system, 4-day adult		53
digestive system, 20-day adult		35
fat body, larvae L3 wandering		41
fat body, white prepupae		146
fat body, pupae P8		210
carcass, larvae L3 wandering		744
carcass, 1-day adult		38
carcass, 4-day adult		71
carcass, 20-day adult		49
ovary, virgin 4-day female		694
ovary, mated 4-day female		739
testis, mated 4-day male		14
accessory gland, mated 4-day male		33
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		555
embryo 02-04hr		1044
embryo 04-06hr		1169
embryo 06-08hr		987
embryo 08-10hr		805
embryo 10-12hr		455
embryo 12-14hr		329
embryo 14-16hr		197
embryo 16-18hr		209
embryo 18-20hr		100
embryo 20-22hr		268
embryo 22-24hr		220
larva L1		62
larva L2		83
larva L3 12hr old		77
larva L3 puffstage 1-2		146
larva L3 puffstage 3-6		242
larva L3 puffstage 7-9		287
white prepupae new		281
white prepupae 12hr		307
white prepupae 24hr		385
pupae 2d postWPP		140
pupae 3d postWPP		39
pupae 4d postWPP		30
adult male 01day		17
adult male 05day		15
adult male 30day		9
adult female 01day		116
adult female 05day		324
adult female 30day		303
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		(555)
embryo 02-04hr		(1044)
embryo 04-06hr		(1169)
embryo 06-08hr		(987)
embryo 08-10hr		(805)
embryo 10-12hr		(455)
embryo 12-14hr		(329)
embryo 14-16hr		(197)
embryo 16-18hr		(209)
embryo 18-20hr		(100)
embryo 20-22hr		(268)
embryo 22-24hr		(220)
larva L1		(62)
larva L2		(83)
larva L3 12hr old		(77)
larva L3 puffstage 1-2		(146)
larva L3 puffstage 3-6		(242)
larva L3 puffstage 7-9		(287)
white prepupae new		(281)
white prepupae 12hr		(307)
white prepupae 24hr		(385)
pupae 2d postWPP		(140)
pupae 3d postWPP		(39)
pupae 4d postWPP		(30)
adult male 01day		17
adult male 05day		15
adult male 30day		9
adult female 01day		(116)
adult female 05day		(324)
adult female 30day		(303)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		(555)
embryo 02-04hr		(1044)
embryo 04-06hr		(1169)
embryo 06-08hr		(987)
embryo 08-10hr		(805)
embryo 10-12hr		(455)
embryo 12-14hr		(329)
embryo 14-16hr		(197)
embryo 16-18hr		(209)
embryo 18-20hr		100
embryo 20-22hr		(268)
embryo 22-24hr		(220)
larva L1		62
larva L2		83
larva L3 12hr old		77
larva L3 puffstage 1-2		(146)
larva L3 puffstage 3-6		(242)
larva L3 puffstage 7-9		(287)
white prepupae new		(281)
white prepupae 12hr		(307)
white prepupae 24hr		(385)
pupae 2d postWPP		(140)
pupae 3d postWPP		39
pupae 4d postWPP		30
adult male 01day		17
adult male 05day		15
adult male 30day		9
adult female 01day		(116)
adult female 05day		(324)
adult female 30day		(303)
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		555
embryo 02-04hr		1044
embryo 04-06hr		1169
embryo 06-08hr		987
embryo 08-10hr		805
embryo 10-12hr		455
embryo 12-14hr		329
embryo 14-16hr		197
embryo 16-18hr		209
embryo 18-20hr		100
embryo 20-22hr		268
embryo 22-24hr		220
larva L1		62
larva L2		83
larva L3 12hr old		77
larva L3 puffstage 1-2		146
larva L3 puffstage 3-6		242
larva L3 puffstage 7-9		287
white prepupae new		281
white prepupae 12hr		307
white prepupae 24hr		385
pupae 2d postWPP		140
pupae 3d postWPP		39
pupae 4d postWPP		30
adult male 01day		17
adult male 05day		15
adult male 30day		9
adult female 01day		116
adult female 05day		324
adult female 30day		303
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		555
embryo 02-04hr		1044
embryo 04-06hr		1169
embryo 06-08hr		987
embryo 08-10hr		805
embryo 10-12hr		455
embryo 12-14hr		329
embryo 14-16hr		197
embryo 16-18hr		209
embryo 18-20hr		100
embryo 20-22hr		268
embryo 22-24hr		220
larva L1		62
larva L2		83
larva L3 12hr old		77
larva L3 puffstage 1-2		146
larva L3 puffstage 3-6		242
larva L3 puffstage 7-9		287
white prepupae new		281
white prepupae 12hr		307
white prepupae 24hr		385
pupae 2d postWPP		140
pupae 3d postWPP		39
pupae 4d postWPP		30
adult male 01day		17
adult male 05day		15
adult male 30day		9
adult female 01day		116
adult female 05day		324
adult female 30day		303
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		(555)
embryo 02-04hr		(1044)
embryo 04-06hr		(1169)
embryo 06-08hr		(987)
embryo 08-10hr		(805)
embryo 10-12hr		(455)
embryo 12-14hr		(329)
embryo 14-16hr		(197)
embryo 16-18hr		(209)
embryo 18-20hr		(100)
embryo 20-22hr		(268)
embryo 22-24hr		(220)
larva L1		(62)
larva L2		(83)
larva L3 12hr old		(77)
larva L3 puffstage 1-2		(146)
larva L3 puffstage 3-6		(242)
larva L3 puffstage 7-9		(287)
white prepupae new		(281)
white prepupae 12hr		(307)
white prepupae 24hr		(385)
pupae 2d postWPP		(140)
pupae 3d postWPP		(39)
pupae 4d postWPP		30
adult male 01day		17
adult male 05day		15
adult male 30day		9
adult female 01day		(116)
adult female 05day		(324)
adult female 30day		(303)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		(555)
embryo 02-04hr		(1044)
embryo 04-06hr		(1169)
embryo 06-08hr		(987)
embryo 08-10hr		(805)
embryo 10-12hr		(455)
embryo 12-14hr		(329)
embryo 14-16hr		(197)
embryo 16-18hr		(209)
embryo 18-20hr		100
embryo 20-22hr		(268)
embryo 22-24hr		(220)
larva L1		62
larva L2		83
larva L3 12hr old		77
larva L3 puffstage 1-2		(146)
larva L3 puffstage 3-6		(242)
larva L3 puffstage 7-9		(287)
white prepupae new		(281)
white prepupae 12hr		(307)
white prepupae 24hr		(385)
pupae 2d postWPP		140
pupae 3d postWPP		39
pupae 4d postWPP		30
adult male 01day		17
adult male 05day		15
adult male 30day		9
adult female 01day		116
adult female 05day		(324)
adult female 30day		(303)
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		555
embryo 02-04hr		1044
embryo 04-06hr		1169
embryo 06-08hr		987
embryo 08-10hr		805
embryo 10-12hr		455
embryo 12-14hr		329
embryo 14-16hr		197
embryo 16-18hr		209
embryo 18-20hr		100
embryo 20-22hr		268
embryo 22-24hr		220
larva L1		62
larva L2		83
larva L3 12hr old		77
larva L3 puffstage 1-2		146
larva L3 puffstage 3-6		242
larva L3 puffstage 7-9		287
white prepupae new		281
white prepupae 12hr		307
white prepupae 24hr		385
pupae 2d postWPP		140
pupae 3d postWPP		39
pupae 4d postWPP		30
adult male 01day		17
adult male 05day		15
adult male 30day		9
adult female 01day		116
adult female 05day		324
adult female 30day		303
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		2106
Schneider line 2 Sg4		838
embryonic 1182-4H		952
embryonic GM2		553
embryonic Kc167		1275
embryonic S1		1158
embryonic S3		1035
leg disc CME L1		735
wing disc CME-W2		660
wing disc ML-DmD8		849
wing disc ML-DmD9		638
wing disc ML-DmD16-c3		898
wing disc ML-DmD21		1460
wing disc ML-DmD32		785
haltere disc ML-DmD17-c3		887
eye-antennal disc ML-DmD11		542
antennal disc ML-DmD20-c5		954
mixed discs ML-DmD4-c1		651
CNS ML-DmBG1-c1		786
CNS ML-DmBG2-c2		669
tumorous blood cells mbn2		1332
ovary fGS/OSS		754
ovary OSC		511
ovary OSS		641
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(2106)
Schneider line 2 Sg4		(838)
embryonic 1182-4H		(952)
embryonic GM2		(553)
embryonic Kc167		(1275)
embryonic S1		(1158)
embryonic S3		(1035)
leg disc CME L1		(735)
wing disc CME-W2		(660)
wing disc ML-DmD8		(849)
wing disc ML-DmD9		(638)
wing disc ML-DmD16-c3		(898)
wing disc ML-DmD21		(1460)
wing disc ML-DmD32		(785)
haltere disc ML-DmD17-c3		(887)
eye-antennal disc ML-DmD11		(542)
antennal disc ML-DmD20-c5		(954)
mixed discs ML-DmD4-c1		(651)
CNS ML-DmBG1-c1		(786)
CNS ML-DmBG2-c2		(669)
tumorous blood cells mbn2		(1332)
ovary fGS/OSS		(754)
ovary OSC		(511)
ovary OSS		(641)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		(2106)
Schneider line 2 Sg4		(838)
embryonic 1182-4H		(952)
embryonic GM2		(553)
embryonic Kc167		(1275)
embryonic S1		(1158)
embryonic S3		(1035)
leg disc CME L1		(735)
wing disc CME-W2		(660)
wing disc ML-DmD8		(849)
wing disc ML-DmD9		(638)
wing disc ML-DmD16-c3		(898)
wing disc ML-DmD21		(1460)
wing disc ML-DmD32		(785)
haltere disc ML-DmD17-c3		(887)
eye-antennal disc ML-DmD11		(542)
antennal disc ML-DmD20-c5		(954)
mixed discs ML-DmD4-c1		(651)
CNS ML-DmBG1-c1		(786)
CNS ML-DmBG2-c2		(669)
tumorous blood cells mbn2		(1332)
ovary fGS/OSS		(754)
ovary OSC		(511)
ovary OSS		(641)
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		2106
Schneider line 2 Sg4		838
embryonic 1182-4H		952
embryonic GM2		553
embryonic Kc167		1275
embryonic S1		1158
embryonic S3		1035
leg disc CME L1		735
wing disc CME-W2		660
wing disc ML-DmD8		849
wing disc ML-DmD9		638
wing disc ML-DmD16-c3		898
wing disc ML-DmD21		1460
wing disc ML-DmD32		785
haltere disc ML-DmD17-c3		887
eye-antennal disc ML-DmD11		542
antennal disc ML-DmD20-c5		954
mixed discs ML-DmD4-c1		651
CNS ML-DmBG1-c1		786
CNS ML-DmBG2-c2		669
tumorous blood cells mbn2		1332
ovary fGS/OSS		754
ovary OSC		511
ovary OSS		641
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		2106
Schneider line 2 Sg4		838
embryonic 1182-4H		952
embryonic GM2		553
embryonic Kc167		1275
embryonic S1		1158
embryonic S3		1035
leg disc CME L1		735
wing disc CME-W2		660
wing disc ML-DmD8		849
wing disc ML-DmD9		638
wing disc ML-DmD16-c3		898
wing disc ML-DmD21		1460
wing disc ML-DmD32		785
haltere disc ML-DmD17-c3		887
eye-antennal disc ML-DmD11		542
antennal disc ML-DmD20-c5		954
mixed discs ML-DmD4-c1		651
CNS ML-DmBG1-c1		786
CNS ML-DmBG2-c2		669
tumorous blood cells mbn2		1332
ovary fGS/OSS		754
ovary OSC		511
ovary OSS		641
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		(2106)
Schneider line 2 Sg4		(838)
embryonic 1182-4H		(952)
embryonic GM2		(553)
embryonic Kc167		(1275)
embryonic S1		(1158)
embryonic S3		(1035)
leg disc CME L1		(735)
wing disc CME-W2		(660)
wing disc ML-DmD8		(849)
wing disc ML-DmD9		(638)
wing disc ML-DmD16-c3		(898)
wing disc ML-DmD21		(1460)
wing disc ML-DmD32		(785)
haltere disc ML-DmD17-c3		(887)
eye-antennal disc ML-DmD11		(542)
antennal disc ML-DmD20-c5		(954)
mixed discs ML-DmD4-c1		(651)
CNS ML-DmBG1-c1		(786)
CNS ML-DmBG2-c2		(669)
tumorous blood cells mbn2		(1332)
ovary fGS/OSS		(754)
ovary OSC		(511)
ovary OSS		(641)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		(2106)
Schneider line 2 Sg4		(838)
embryonic 1182-4H		(952)
embryonic GM2		(553)
embryonic Kc167		(1275)
embryonic S1		(1158)
embryonic S3		(1035)
leg disc CME L1		(735)
wing disc CME-W2		(660)
wing disc ML-DmD8		(849)
wing disc ML-DmD9		(638)
wing disc ML-DmD16-c3		(898)
wing disc ML-DmD21		(1460)
wing disc ML-DmD32		(785)
haltere disc ML-DmD17-c3		(887)
eye-antennal disc ML-DmD11		(542)
antennal disc ML-DmD20-c5		(954)
mixed discs ML-DmD4-c1		(651)
CNS ML-DmBG1-c1		(786)
CNS ML-DmBG2-c2		(669)
tumorous blood cells mbn2		(1332)
ovary fGS/OSS		(754)
ovary OSC		(511)
ovary OSS		(641)
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		2106
Schneider line 2 Sg4		838
embryonic 1182-4H		952
embryonic GM2		553
embryonic Kc167		1275
embryonic S1		1158
embryonic S3		1035
leg disc CME L1		735
wing disc CME-W2		660
wing disc ML-DmD8		849
wing disc ML-DmD9		638
wing disc ML-DmD16-c3		898
wing disc ML-DmD21		1460
wing disc ML-DmD32		785
haltere disc ML-DmD17-c3		887
eye-antennal disc ML-DmD11		542
antennal disc ML-DmD20-c5		954
mixed discs ML-DmD4-c1		651
CNS ML-DmBG1-c1		786
CNS ML-DmBG2-c2		669
tumorous blood cells mbn2		1332
ovary fGS/OSS		754
ovary OSC		511
ovary OSS		641
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		213
cold shock, 4-day adult		177
heat shock, 4-day adult		230
Cadmium 50 mM 6 hrs, larvae L3		178
Cadmium 50 mM 12 hrs, larvae L3		326
Cadmium 50 mM 48 hrs, 4-day adult		267
Cadmium 100 mM 48 hrs, 4-day adult		574
Copper 0.5 mM 12 hrs, larvae L3		300
Copper 15 mM 48 hrs, 4-day adult		683
Zinc 5 mM 12 hrs, larvae L3		204
Zinc 4.5 mM 48 hrs, 4-day adult		172
Ethanol 2.5% 3 hrs, larvae L3		393
Ethanol 5% 3 hrs, larvae L3		184
Ethanol 10% 3 hrs, larvae L3		159
Caffeine 1.5 mg/ml 4 hrs, larvae L3		137
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		547
Caffeine 25 mg/ml 48 hrs, 4-day adult		206
Paraquat 5 mM 48 hrs, 4-day adult		366
Paraquat 10 mM 48 hrs, 4-day adult		222
Rotenone 2 μg 12 hrs, larvae L3		206
Rotenone 8 μg 12 hrs, larvae L3		144
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		(213)
cold shock, 4-day adult		(177)
heat shock, 4-day adult		(230)
Cadmium 50 mM 6 hrs, larvae L3		(178)
Cadmium 50 mM 12 hrs, larvae L3		(326)
Cadmium 50 mM 48 hrs, 4-day adult		(267)
Cadmium 100 mM 48 hrs, 4-day adult		(574)
Copper 0.5 mM 12 hrs, larvae L3		(300)
Copper 15 mM 48 hrs, 4-day adult		(683)
Zinc 5 mM 12 hrs, larvae L3		(204)
Zinc 4.5 mM 48 hrs, 4-day adult		(172)
Ethanol 2.5% 3 hrs, larvae L3		(393)
Ethanol 5% 3 hrs, larvae L3		(184)
Ethanol 10% 3 hrs, larvae L3		(159)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(137)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		(547)
Caffeine 25 mg/ml 48 hrs, 4-day adult		(206)
Paraquat 5 mM 48 hrs, 4-day adult		(366)
Paraquat 10 mM 48 hrs, 4-day adult		(222)
Rotenone 2 μg 12 hrs, larvae L3		(206)
Rotenone 8 μg 12 hrs, larvae L3		(144)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		(213)
cold shock, 4-day adult		(177)
heat shock, 4-day adult		(230)
Cadmium 50 mM 6 hrs, larvae L3		(178)
Cadmium 50 mM 12 hrs, larvae L3		(326)
Cadmium 50 mM 48 hrs, 4-day adult		(267)
Cadmium 100 mM 48 hrs, 4-day adult		(574)
Copper 0.5 mM 12 hrs, larvae L3		(300)
Copper 15 mM 48 hrs, 4-day adult		(683)
Zinc 5 mM 12 hrs, larvae L3		(204)
Zinc 4.5 mM 48 hrs, 4-day adult		(172)
Ethanol 2.5% 3 hrs, larvae L3		(393)
Ethanol 5% 3 hrs, larvae L3		(184)
Ethanol 10% 3 hrs, larvae L3		(159)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(137)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		(547)
Caffeine 25 mg/ml 48 hrs, 4-day adult		(206)
Paraquat 5 mM 48 hrs, 4-day adult		(366)
Paraquat 10 mM 48 hrs, 4-day adult		(222)
Rotenone 2 μg 12 hrs, larvae L3		(206)
Rotenone 8 μg 12 hrs, larvae L3		(144)
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		213
cold shock, 4-day adult		177
heat shock, 4-day adult		230
Cadmium 50 mM 6 hrs, larvae L3		178
Cadmium 50 mM 12 hrs, larvae L3		326
Cadmium 50 mM 48 hrs, 4-day adult		267
Cadmium 100 mM 48 hrs, 4-day adult		574
Copper 0.5 mM 12 hrs, larvae L3		300
Copper 15 mM 48 hrs, 4-day adult		683
Zinc 5 mM 12 hrs, larvae L3		204
Zinc 4.5 mM 48 hrs, 4-day adult		172
Ethanol 2.5% 3 hrs, larvae L3		393
Ethanol 5% 3 hrs, larvae L3		184
Ethanol 10% 3 hrs, larvae L3		159
Caffeine 1.5 mg/ml 4 hrs, larvae L3		137
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		547
Caffeine 25 mg/ml 48 hrs, 4-day adult		206
Paraquat 5 mM 48 hrs, 4-day adult		366
Paraquat 10 mM 48 hrs, 4-day adult		222
Rotenone 2 μg 12 hrs, larvae L3		206
Rotenone 8 μg 12 hrs, larvae L3		144
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		213
cold shock, 4-day adult		177
heat shock, 4-day adult		230
Cadmium 50 mM 6 hrs, larvae L3		178
Cadmium 50 mM 12 hrs, larvae L3		326
Cadmium 50 mM 48 hrs, 4-day adult		267
Cadmium 100 mM 48 hrs, 4-day adult		574
Copper 0.5 mM 12 hrs, larvae L3		300
Copper 15 mM 48 hrs, 4-day adult		683
Zinc 5 mM 12 hrs, larvae L3		204
Zinc 4.5 mM 48 hrs, 4-day adult		172
Ethanol 2.5% 3 hrs, larvae L3		393
Ethanol 5% 3 hrs, larvae L3		184
Ethanol 10% 3 hrs, larvae L3		159
Caffeine 1.5 mg/ml 4 hrs, larvae L3		137
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		547
Caffeine 25 mg/ml 48 hrs, 4-day adult		206
Paraquat 5 mM 48 hrs, 4-day adult		366
Paraquat 10 mM 48 hrs, 4-day adult		222
Rotenone 2 μg 12 hrs, larvae L3		206
Rotenone 8 μg 12 hrs, larvae L3		144
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		(213)
cold shock, 4-day adult		(177)
heat shock, 4-day adult		(230)
Cadmium 50 mM 6 hrs, larvae L3		(178)
Cadmium 50 mM 12 hrs, larvae L3		(326)
Cadmium 50 mM 48 hrs, 4-day adult		(267)
Cadmium 100 mM 48 hrs, 4-day adult		(574)
Copper 0.5 mM 12 hrs, larvae L3		(300)
Copper 15 mM 48 hrs, 4-day adult		(683)
Zinc 5 mM 12 hrs, larvae L3		(204)
Zinc 4.5 mM 48 hrs, 4-day adult		(172)
Ethanol 2.5% 3 hrs, larvae L3		(393)
Ethanol 5% 3 hrs, larvae L3		(184)
Ethanol 10% 3 hrs, larvae L3		(159)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(137)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		(547)
Caffeine 25 mg/ml 48 hrs, 4-day adult		(206)
Paraquat 5 mM 48 hrs, 4-day adult		(366)
Paraquat 10 mM 48 hrs, 4-day adult		(222)
Rotenone 2 μg 12 hrs, larvae L3		(206)
Rotenone 8 μg 12 hrs, larvae L3		(144)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		(213)
cold shock, 4-day adult		(177)
heat shock, 4-day adult		(230)
Cadmium 50 mM 6 hrs, larvae L3		(178)
Cadmium 50 mM 12 hrs, larvae L3		(326)
Cadmium 50 mM 48 hrs, 4-day adult		(267)
Cadmium 100 mM 48 hrs, 4-day adult		(574)
Copper 0.5 mM 12 hrs, larvae L3		(300)
Copper 15 mM 48 hrs, 4-day adult		(683)
Zinc 5 mM 12 hrs, larvae L3		(204)
Zinc 4.5 mM 48 hrs, 4-day adult		(172)
Ethanol 2.5% 3 hrs, larvae L3		(393)
Ethanol 5% 3 hrs, larvae L3		(184)
Ethanol 10% 3 hrs, larvae L3		(159)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		137
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		(547)
Caffeine 25 mg/ml 48 hrs, 4-day adult		(206)
Paraquat 5 mM 48 hrs, 4-day adult		(366)
Paraquat 10 mM 48 hrs, 4-day adult		(222)
Rotenone 2 μg 12 hrs, larvae L3		(206)
Rotenone 8 μg 12 hrs, larvae L3		(144)
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		213
cold shock, 4-day adult		177
heat shock, 4-day adult		230
Cadmium 50 mM 6 hrs, larvae L3		178
Cadmium 50 mM 12 hrs, larvae L3		326
Cadmium 50 mM 48 hrs, 4-day adult		267
Cadmium 100 mM 48 hrs, 4-day adult		574
Copper 0.5 mM 12 hrs, larvae L3		300
Copper 15 mM 48 hrs, 4-day adult		683
Zinc 5 mM 12 hrs, larvae L3		204
Zinc 4.5 mM 48 hrs, 4-day adult		172
Ethanol 2.5% 3 hrs, larvae L3		393
Ethanol 5% 3 hrs, larvae L3		184
Ethanol 10% 3 hrs, larvae L3		159
Caffeine 1.5 mg/ml 4 hrs, larvae L3		137
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		547
Caffeine 25 mg/ml 48 hrs, 4-day adult		206
Paraquat 5 mM 48 hrs, 4-day adult		366
Paraquat 10 mM 48 hrs, 4-day adult		222
Rotenone 2 μg 12 hrs, larvae L3		206
Rotenone 8 μg 12 hrs, larvae L3		144
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010, Graveley et al., 2011)

External Data & Images

Linkouts

BDGP expression data

•

LD21289

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0022893

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG2207-RA

FlyExpress - Embryonic expression images (BDGP data)

•

Show all FlyExpress processed images for Df31

Stages(s) 7-8

Stages(s) 11-12

Stages(s) 13-16

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

lethal | recessive

partially lethal - majority die, with Scer\GAL4^hs.2sev

Df31^GS2138

viable

Df31^CB02104

viable, with Scer\GAL4^pnr-MD237

Df31^GD9752

Other Phenotypes

Allele

long lived, with Scer\GAL4^hs.PB

Df31^GS2138

wild-type, with Scer\GAL4^29BD

Df31^GS2138

wild-type, with Scer\GAL4^c355

Df31^GS2138

wild-type, with Scer\GAL4^dpp.blk1

Df31^GS2138

Phenotype manifest in

Allele

chromatin

Classical Alleles ( 14 )

For All Classical Alleles Show

Allele of Df31	Mutagen	Stocks	Known lesion
Df31^k05815	P-element activity	2	--
Df31^5-HA-1496		1	--
Df31^5-SZ-3363		1	--
Df31^d03273	P-element activity	1	--
Df31^e02932	piggyBac transposase	1	--
Df31^NP1533		1	--
Df31^CB02104	P-element activity	0	Yes
Df31^d03489	P-element activity	0	--
Df31^d09401	P-element activity	0	--
Df31^DG29103	P-element activity	0	--
Df31^G196	P-element activity	0	Yes
Df31^GS2138	Delta2-3 P-element activity	0	Yes
Df31^k05501b	P-element activity	0	--
Df31^SH1004		0	--

Alleles Carried on Transgenic Constructs ( 7 )

For All Alleles Carried on Transgenic Constructs Show

Allele of Df31	Mutagen	Stocks	Known lesion
Df31^GD9752	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
Df31^GL01529	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
Df31^GLV21083	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
Df31^KK112252	in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
Df31^a.C	in vitro construct	0	Yes
Df31^a.N	in vitro construct	0	Yes
Df31^NIG.2207R	in vitro construct - RNAi in vitro construct - regulatory fusion	0	Yes