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Gene Dmel\yps

General Information
Symbol	Dmel\yps	Species	D. melanogaster
Name	ypsilon schachtel	Annotation symbol	CG5654
Feature type	protein_coding_gene	FlyBase ID	FBgn0022959
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	68F4-68F4	Sequence location	3L:12,114,374..12,118,250 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene ypsilon schachtel is referred to in FlyBase by the symbol Dmel\yps (CG5654, FBgn0022959). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: nucleic acid binding. It is reported to be involved in the biological process: mRNA splicing, via spliceosome; oogenesis. 8 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Cold shock protein; Cold-shock conserved site; Cold-shock protein, DNA-binding; Nucleic acid-binding, OB-fold. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-18 hour embryonic stages, during early larval stages, at stages throughout the pupal period, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult hindgut, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult thoracico-abdominal ganglion, larval/adult midgut, larval/adult Malpighian tubules, larval fat body, virgin spermatheca. Comments on Affy2 ProbeSet: ProbeSet 1633798_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of yps. Gene sequence location is 3L:12114374..12118250.
User Contributed Data
	Beta version, feedback welcome
External Summaries
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 68F4-68F4   Limits computationally determined from genome sequence between P{PZ}rols08232&P{lacW}l(3)j2D3j2D3 and P{PZ}l(3)0508805088
Experimentally Determined Cytological Location
Cytogenetic map Notes References 68F3-68F7   (determined by in situ hybridisation)   (Mansfield et al., 2002) 68F3-68F7   (determined by in situ hybridisation)   (Mansfield et al., 2000) 70A-70F     (Thieringer, 1996.2.13) 69-70   (determined by in situ hybridisation)   (Thieringer et al., 1997)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\yps for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46 Low-frequency RNA-Seq exon junction(s) not annotated. DGC clone appears problematic: incomplete CDS(GH18372) DGC clone appears problematic: unspliced intron (GH18372)
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) yps-RA FBtr0076027  NM_079309   1750   352 yps-RB FBtr0305992  NM_001259801   2677   340
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein yps-PA   FBpp0075759   38.2   352   10.44     NP_524033   AAF49961 yps-PB   FBpp0297134   37.0   340   10.63     NP_001246730   AFH04401
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Cold-shock protein, DNA-binding (IPR002059) Cold shock protein (IPR011129) Nucleic acid-binding, OB-fold (IPR012340) Cold-shock conserved site (IPR019844)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA538785   AA695283   AA735177   AA802074   AA803706   AA816464   AA820529   AA820785   AA948974   AA951020   AA952185   AA952207   AA978753   AA979170   AA979349   AA979400   AA979477   AA990772   AE014296 AAF49961   AE014296 AFH04401   AI113428   AI135601   AI238302   AI258059   AI258613   AI259079   AI296065   AI296341   AI297725   AI387736   AI404324   AI405562   AI405943   AI406056   AI456828   AI456923   AI511923   AI514877   AI515024   AI518147   AI519835   AI533868   AI533873   AI544363   AI546501   AI945643   AW940702   AW943389   AY060315 AAL25354   AY061440 AAL28988   BE976299   BF491216   BF499211   BG635247   BG636469   BI161972   BI162531   BI162532   BI162914   BI164237   BI169788   BI172060   BI227789   BI228864   BI230774   BI231713   BI232085   BI232310   BI234053   BI235698   BI235788   BI236013   BI240805   BI242271   BI353681   BI362684   BI363158   BI375291   BI482311   BI486389   BI579815   BI583005   BI583817   BI585393   BI591205   BI591451   BI593153   BI593207   BI605655   BI607572   BI608705   BI613906   BI620483   BI622755   BI628705   BI629898   BI631172   BI633045   BI633320   BI633579   BI633603   BI633741   BI638505   BI639373   BP546853   BP549495   BP554559   BP554560   BQ102900   CA807136   CK445223   CO177380   CO179265   CO186896   CO187670   CO188803   CO263488   CO267997   CO275186   CO278578   CO278642   CO278714   CO283641   CO286284   CO286335   CO287755   CO289112   CO289163   CO296094   CO297585   CO299976   CO307750   CO309094   CO309795   CO312159   CO313029   CO314967   CO316655   CO316888   CO321523   CO326249   CO329731   CO336734   CZ467010   EC059535   EC061166   EC062248   EC065116   EC066536   EC067159   EC067395   EC072649   EC072674   EC075695   EC076055   EC077584   EC079132   EC081223   EC081626   EC085151   EC085873   EC086848   EC088402   EC196055   EC196111   EC196897   EC204716   EC206411   EC211122   EC213318   EC218843   EC219429   EC219928   EC228085   EC230112   EC231325   EC234324   EC235900   EC236192   EC241003   EC241168   EC249880   EC260085   EC263994   EC264223   EC267011   EL883378   ES692955   ES692965   EV586757   EV588795   EV588957   EV590310   EV590721   EV591285   EV593748   EV599935   GH752180   GH755020   GH757612   GH770423   GH771552   GH775625   GH777900   GH785308   GH786344   GH788087   GH790044   GH790900   GH792461   GH794158   GH796016   GH796042   GH798412   GH801448   GH802431   GH811825   GH811865   GH814894   GH815930   GH818629   GH823921   GH826238   GH828635   GH828972   GH829063   GH831090   GH831604   GH832372   GH834566   GH838230   GH844454   GH847866   GH850847   GH851342   GH855914   GH856162   GH860022   GH860389   GH860887   GH864105   GH871822   GH874539   GH875021   GH875135   GH875745   GH876893   GH879001   GH880118   GH880171   GH882171   GH884121   GH885787   GH892224   GH893675   GH894502   GH894865   GH895309   GH895605   GH896351   GH896996   GH897336   GH897413   GH903169   GH903313   GH905499   GH907567   GH907733   GH909931   GH910747   GH911077   GH911267   GH912835   GH913121   GH919456   GH919942   GH922938   GH924477   GH925542   GH932120   GH932518   GH932611   GH932914   GH933321   GH935373   GH937098   GH939201   GH939779   GH939896   GH939957   U49120 AAB94634
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q95RE4 Q95T63 O46173
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
immunolocalization Stage Tissue/Position (including subcellular localization) Reference adult stage | female & oogenesis   oocyte   • cytoplasm | granular (Nakamura et al., 2001) nurse cell   • cytoplasm | granular (Nakamura et al., 2001) oogenesis stage S1 -- S10   nurse cell   • pole plasm (Wilhelm et al., 2000) oogenesis stage S1 -- S14   follicle cell   (Wilhelm et al., 2000) oogenesis stage S9 -- S14   oocyte | posterior   • perinuclear region of cytoplasm (Wilhelm et al., 2000) mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
catalytic step 2 spliceosome inferred from direct assay (Herold et al., 2009) precatalytic spliceosome inferred from direct assay (Herold et al., 2009)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult hindgut, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult thoracico-abdominal ganglion, larval/adult midgut, larval/adult Malpighian tubules, larval fat body, virgin spermatheca. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    1739.5 Larval Midgut    347.7 Larval Hindgut    884.7 Larval Malpighian Tubules    327.9 Larval Fat Body    430 Larval Salivary Gland    1122.5 Larval Trachea    1106.525 Larval Carcass    1060.05 Adult Head    1198.1 Adult Eye    2548.1 Adult Brain    723.5 Adult Thoracic-Abdominal Ganglion    471.1 Adult Crop    927.1 Adult Midgut    309.8 Adult Hindgut    706.1 Adult Malpighian Tubules    263.5 Adult Fat Body    632.1 Adult Salivary Gland    645.1 Adult Heart    508.725 Adult VirginFemale Spermatheca    475.6 Adult InseminatedFemale Spermatheca    601.3 Adult Ovary    1095.8 Adult Testis    908 Adult Male Accessory Gland    1306.3 Adult Carcass    580.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (1739.5) Larval Midgut    347.7 Larval Hindgut  (884.7) Larval Malpighian Tubules    327.9 Larval Fat Body    430 Larval Salivary Gland  (1122.5) Larval Trachea  (1106.525) Larval Carcass  (1060.05) Adult Head  (1198.1) Adult Eye  (2548.1) Adult Brain  (723.5) Adult Thoracic-Abdominal Ganglion    471.1 Adult Crop  (927.1) Adult Midgut    309.8 Adult Hindgut  (706.1) Adult Malpighian Tubules    263.5 Adult Fat Body  (632.1) Adult Salivary Gland  (645.1) Adult Heart  508.725 Adult VirginFemale Spermatheca    475.6 Adult InseminatedFemale Spermatheca  (601.3) Adult Ovary  (1095.8) Adult Testis  (908) Adult Male Accessory Gland  (1306.3) Adult Carcass  (580.3) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (1739.5) Larval Midgut    347.7 Larval Hindgut    884.7 Larval Malpighian Tubules    327.9 Larval Fat Body    430 Larval Salivary Gland  (1122.5) Larval Trachea  (1106.525) Larval Carcass  1060.05 Adult Head  (1198.1) Adult Eye  (2548.1) Adult Brain    723.5 Adult Thoracic-Abdominal Ganglion    471.1 Adult Crop    927.1 Adult Midgut    309.8 Adult Hindgut    706.1 Adult Malpighian Tubules    263.5 Adult Fat Body    632.1 Adult Salivary Gland    645.1 Adult Heart    508.725 Adult VirginFemale Spermatheca    475.6 Adult InseminatedFemale Spermatheca    601.3 Adult Ovary  (1095.8) Adult Testis    908 Adult Male Accessory Gland  (1306.3) Adult Carcass    580.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    1739.5 Larval Midgut    347.7 Larval Hindgut    884.7 Larval Malpighian Tubules    327.9 Larval Fat Body    430 Larval Salivary Gland    1122.5 Larval Trachea    1106.525 Larval Carcass    1060.05 Adult Head    1198.1 Adult Eye    2548.1 Adult Brain    723.5 Adult Thoracic-Abdominal Ganglion    471.1 Adult Crop    927.1 Adult Midgut    309.8 Adult Hindgut    706.1 Adult Malpighian Tubules    263.5 Adult Fat Body    632.1 Adult Salivary Gland    645.1 Adult Heart    508.725 Adult VirginFemale Spermatheca    475.6 Adult InseminatedFemale Spermatheca    601.3 Adult Ovary    1095.8 Adult Testis    908 Adult Male Accessory Gland    1306.3 Adult Carcass    580.3 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    1739.5 Larval Midgut    347.7 Larval Hindgut    884.7 Larval Malpighian Tubules    327.9 Larval Fat Body    430 Larval Salivary Gland    1122.5 Larval Trachea    1106.525 Larval Carcass    1060.05 Adult Head    1198.1 Adult Eye    2548.1 Adult Brain    723.5 Adult Thoracic-Abdominal Ganglion    471.1 Adult Crop    927.1 Adult Midgut    309.8 Adult Hindgut    706.1 Adult Malpighian Tubules    263.5 Adult Fat Body    632.1 Adult Salivary Gland    645.1 Adult Heart    508.725 Adult VirginFemale Spermatheca    475.6 Adult InseminatedFemale Spermatheca    601.3 Adult Ovary    1095.8 Adult Testis    908 Adult Male Accessory Gland    1306.3 Adult Carcass    580.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (1739.5) Larval Midgut    347.7 Larval Hindgut  (884.7) Larval Malpighian Tubules    327.9 Larval Fat Body    430 Larval Salivary Gland  (1122.5) Larval Trachea  (1106.525) Larval Carcass  (1060.05) Adult Head  (1198.1) Adult Eye  (2548.1) Adult Brain  723.5 Adult Thoracic-Abdominal Ganglion    471.1 Adult Crop  (927.1) Adult Midgut    309.8 Adult Hindgut  706.1 Adult Malpighian Tubules    263.5 Adult Fat Body  632.1 Adult Salivary Gland  645.1 Adult Heart  508.725 Adult VirginFemale Spermatheca    475.6 Adult InseminatedFemale Spermatheca  601.3 Adult Ovary  (1095.8) Adult Testis  (908) Adult Male Accessory Gland  (1306.3) Adult Carcass  580.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (1739.5) Larval Midgut    347.7 Larval Hindgut    884.7 Larval Malpighian Tubules    327.9 Larval Fat Body    430 Larval Salivary Gland  1122.5 Larval Trachea  1106.525 Larval Carcass  1060.05 Adult Head  1198.1 Adult Eye  (2548.1) Adult Brain    723.5 Adult Thoracic-Abdominal Ganglion    471.1 Adult Crop    927.1 Adult Midgut    309.8 Adult Hindgut    706.1 Adult Malpighian Tubules    263.5 Adult Fat Body    632.1 Adult Salivary Gland    645.1 Adult Heart    508.725 Adult VirginFemale Spermatheca    475.6 Adult InseminatedFemale Spermatheca    601.3 Adult Ovary  1095.8 Adult Testis    908 Adult Male Accessory Gland  1306.3 Adult Carcass    580.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    1739.5 Larval Midgut    347.7 Larval Hindgut    884.7 Larval Malpighian Tubules    327.9 Larval Fat Body    430 Larval Salivary Gland    1122.5 Larval Trachea    1106.525 Larval Carcass    1060.05 Adult Head    1198.1 Adult Eye    2548.1 Adult Brain    723.5 Adult Thoracic-Abdominal Ganglion    471.1 Adult Crop    927.1 Adult Midgut    309.8 Adult Hindgut    706.1 Adult Malpighian Tubules    263.5 Adult Fat Body    632.1 Adult Salivary Gland    645.1 Adult Heart    508.725 Adult VirginFemale Spermatheca    475.6 Adult InseminatedFemale Spermatheca    601.3 Adult Ovary    1095.8 Adult Testis    908 Adult Male Accessory Gland    1306.3 Adult Carcass    580.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    1198.1   NA  Eye    2548.1   NA  Brain    723.5   1739.5  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    471.1   NA  Crop    927.1   347.7  Midgut    309.8   884.7  Hindgut    706.1   327.9  Malpighian Tubules    263.5   430  Fat Body    632.1   1122.5  Salivary Gland    645.1   NA  Heart    508.725   1106.525  Trachea    NA   NA  VirginFemale Spermatheca    475.6   NA  InseminatedFemale Spermatheca    601.3   NA  Ovary    1095.8   NA  Testis    908   NA  Male Accessory Gland    1306.3   1060.05  Carcass    580.3 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    268 central nervous system, larvae L3    396 central nervous system, pupae P8    160 head, virgin 1-day female    67 head, virgin 4-day female    119 head, virgin 20-day female    95 head, mated 1-day female    74 head, mated 4-day female    126 head, mated 20-day female    108 head, mated 1-day male    71 head, mated 4-day male    163 head, mated 20-day male    175 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    19 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    36 digestive system, 4-day adult    72 digestive system, 20-day adult    42 fat body, larvae L3 wandering    26 fat body, white prepupae    66 fat body, pupae P8    71 carcass, larvae L3 wandering    136 carcass, 1-day adult    72 carcass, 4-day adult    96 carcass, 20-day adult    80 ovary, virgin 4-day female    158 ovary, mated 4-day female    163 testis, mated 4-day male    185 accessory gland, mated 4-day male    78 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (268) central nervous system, larvae L3  (396) central nervous system, pupae P8  (160) head, virgin 1-day female  (67) head, virgin 4-day female  (119) head, virgin 20-day female  (95) head, mated 1-day female  (74) head, mated 4-day female  (126) head, mated 20-day female  (108) head, mated 1-day male  (71) head, mated 4-day male  (163) head, mated 20-day male  (175) salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    19 digestive system, larvae L3 wandering  (45) digestive system, 1-day adult  (36) digestive system, 4-day adult  (72) digestive system, 20-day adult  (42) fat body, larvae L3 wandering  26 fat body, white prepupae  (66) fat body, pupae P8  (71) carcass, larvae L3 wandering  (136) carcass, 1-day adult  (72) carcass, 4-day adult  (96) carcass, 20-day adult  (80) ovary, virgin 4-day female  (158) ovary, mated 4-day female  (163) testis, mated 4-day male  (185) accessory gland, mated 4-day male  (78) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (268) central nervous system, larvae L3  (396) central nervous system, pupae P8  (160) head, virgin 1-day female    67 head, virgin 4-day female  (119) head, virgin 20-day female    95 head, mated 1-day female    74 head, mated 4-day female  (126) head, mated 20-day female  (108) head, mated 1-day male    71 head, mated 4-day male  (163) head, mated 20-day male  (175) salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    19 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    36 digestive system, 4-day adult    72 digestive system, 20-day adult    42 fat body, larvae L3 wandering    26 fat body, white prepupae    66 fat body, pupae P8    71 carcass, larvae L3 wandering  (136) carcass, 1-day adult    72 carcass, 4-day adult    96 carcass, 20-day adult    80 ovary, virgin 4-day female  (158) ovary, mated 4-day female  (163) testis, mated 4-day male  (185) accessory gland, mated 4-day male    78 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    268 central nervous system, larvae L3    396 central nervous system, pupae P8    160 head, virgin 1-day female    67 head, virgin 4-day female    119 head, virgin 20-day female    95 head, mated 1-day female    74 head, mated 4-day female    126 head, mated 20-day female    108 head, mated 1-day male    71 head, mated 4-day male    163 head, mated 20-day male    175 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    19 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    36 digestive system, 4-day adult    72 digestive system, 20-day adult    42 fat body, larvae L3 wandering    26 fat body, white prepupae    66 fat body, pupae P8    71 carcass, larvae L3 wandering    136 carcass, 1-day adult    72 carcass, 4-day adult    96 carcass, 20-day adult    80 ovary, virgin 4-day female    158 ovary, mated 4-day female    163 testis, mated 4-day male    185 accessory gland, mated 4-day male    78 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    268 central nervous system, larvae L3    396 central nervous system, pupae P8    160 head, virgin 1-day female    67 head, virgin 4-day female    119 head, virgin 20-day female    95 head, mated 1-day female    74 head, mated 4-day female    126 head, mated 20-day female    108 head, mated 1-day male    71 head, mated 4-day male    163 head, mated 20-day male    175 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    19 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    36 digestive system, 4-day adult    72 digestive system, 20-day adult    42 fat body, larvae L3 wandering    26 fat body, white prepupae    66 fat body, pupae P8    71 carcass, larvae L3 wandering    136 carcass, 1-day adult    72 carcass, 4-day adult    96 carcass, 20-day adult    80 ovary, virgin 4-day female    158 ovary, mated 4-day female    163 testis, mated 4-day male    185 accessory gland, mated 4-day male    78 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (268) central nervous system, larvae L3  (396) central nervous system, pupae P8  (160) head, virgin 1-day female  (67) head, virgin 4-day female  (119) head, virgin 20-day female  (95) head, mated 1-day female  (74) head, mated 4-day female  (126) head, mated 20-day female  (108) head, mated 1-day male  (71) head, mated 4-day male  (163) head, mated 20-day male  (175) salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    19 digestive system, larvae L3 wandering  (45) digestive system, 1-day adult  (36) digestive system, 4-day adult  (72) digestive system, 20-day adult  (42) fat body, larvae L3 wandering  26 fat body, white prepupae  (66) fat body, pupae P8  (71) carcass, larvae L3 wandering  (136) carcass, 1-day adult  (72) carcass, 4-day adult  (96) carcass, 20-day adult  (80) ovary, virgin 4-day female  (158) ovary, mated 4-day female  (163) testis, mated 4-day male  (185) accessory gland, mated 4-day male  (78) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (268) central nervous system, larvae L3  (396) central nervous system, pupae P8  (160) head, virgin 1-day female    67 head, virgin 4-day female  119 head, virgin 20-day female    95 head, mated 1-day female    74 head, mated 4-day female  126 head, mated 20-day female  108 head, mated 1-day male    71 head, mated 4-day male  (163) head, mated 20-day male  (175) salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    19 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    36 digestive system, 4-day adult    72 digestive system, 20-day adult    42 fat body, larvae L3 wandering    26 fat body, white prepupae    66 fat body, pupae P8    71 carcass, larvae L3 wandering  136 carcass, 1-day adult    72 carcass, 4-day adult    96 carcass, 20-day adult    80 ovary, virgin 4-day female  (158) ovary, mated 4-day female  (163) testis, mated 4-day male  (185) accessory gland, mated 4-day male    78 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    268 central nervous system, larvae L3    396 central nervous system, pupae P8    160 head, virgin 1-day female    67 head, virgin 4-day female    119 head, virgin 20-day female    95 head, mated 1-day female    74 head, mated 4-day female    126 head, mated 20-day female    108 head, mated 1-day male    71 head, mated 4-day male    163 head, mated 20-day male    175 salivary gland, larvae L3 wandering    7 salivary gland, white prepupae    19 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    36 digestive system, 4-day adult    72 digestive system, 20-day adult    42 fat body, larvae L3 wandering    26 fat body, white prepupae    66 fat body, pupae P8    71 carcass, larvae L3 wandering    136 carcass, 1-day adult    72 carcass, 4-day adult    96 carcass, 20-day adult    80 ovary, virgin 4-day female    158 ovary, mated 4-day female    163 testis, mated 4-day male    185 accessory gland, mated 4-day male    78 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-18 hour embryonic stages, during early larval stages, at stages throughout the pupal period, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    113 embryo 02-04hr    118 embryo 04-06hr    118 embryo 06-08hr    180 embryo 08-10hr    155 embryo 10-12hr    149 embryo 12-14hr    163 embryo 14-16hr    124 embryo 16-18hr    97 embryo 18-20hr    77 embryo 20-22hr    52 embryo 22-24hr    40 larva L1    92 larva L2    99 larva L3 12hr old    108 larva L3 puffstage 1-2    60 larva L3 puffstage 3-6    92 larva L3 puffstage 7-9    82 white prepupae new    83 white prepupae 12hr    82 white prepupae 24hr    111 pupae 2d postWPP    100 pupae 3d postWPP    120 pupae 4d postWPP    68 adult male 01day    74 adult male 05day    93 adult male 30day    91 adult female 01day    82 adult female 05day    102 adult female 30day    108 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (113) embryo 02-04hr  (118) embryo 04-06hr  (118) embryo 06-08hr  (180) embryo 08-10hr  (155) embryo 10-12hr  (149) embryo 12-14hr  (163) embryo 14-16hr  (124) embryo 16-18hr  (97) embryo 18-20hr  (77) embryo 20-22hr  (52) embryo 22-24hr  (40) larva L1  (92) larva L2  (99) larva L3 12hr old  (108) larva L3 puffstage 1-2  (60) larva L3 puffstage 3-6  (92) larva L3 puffstage 7-9  (82) white prepupae new  (83) white prepupae 12hr  (82) white prepupae 24hr  (111) pupae 2d postWPP  (100) pupae 3d postWPP  (120) pupae 4d postWPP  (68) adult male 01day  (74) adult male 05day  (93) adult male 30day  (91) adult female 01day  (82) adult female 05day  (102) adult female 30day  (108) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (113) embryo 02-04hr  (118) embryo 04-06hr  (118) embryo 06-08hr  (180) embryo 08-10hr  (155) embryo 10-12hr  (149) embryo 12-14hr  (163) embryo 14-16hr  (124) embryo 16-18hr    97 embryo 18-20hr    77 embryo 20-22hr    52 embryo 22-24hr    40 larva L1    92 larva L2    99 larva L3 12hr old  (108) larva L3 puffstage 1-2    60 larva L3 puffstage 3-6    92 larva L3 puffstage 7-9    82 white prepupae new    83 white prepupae 12hr    82 white prepupae 24hr  (111) pupae 2d postWPP    100 pupae 3d postWPP  (120) pupae 4d postWPP    68 adult male 01day    74 adult male 05day    93 adult male 30day    91 adult female 01day    82 adult female 05day  102 adult female 30day  (108) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    113 embryo 02-04hr    118 embryo 04-06hr    118 embryo 06-08hr    180 embryo 08-10hr    155 embryo 10-12hr    149 embryo 12-14hr    163 embryo 14-16hr    124 embryo 16-18hr    97 embryo 18-20hr    77 embryo 20-22hr    52 embryo 22-24hr    40 larva L1    92 larva L2    99 larva L3 12hr old    108 larva L3 puffstage 1-2    60 larva L3 puffstage 3-6    92 larva L3 puffstage 7-9    82 white prepupae new    83 white prepupae 12hr    82 white prepupae 24hr    111 pupae 2d postWPP    100 pupae 3d postWPP    120 pupae 4d postWPP    68 adult male 01day    74 adult male 05day    93 adult male 30day    91 adult female 01day    82 adult female 05day    102 adult female 30day    108 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    113 embryo 02-04hr    118 embryo 04-06hr    118 embryo 06-08hr    180 embryo 08-10hr    155 embryo 10-12hr    149 embryo 12-14hr    163 embryo 14-16hr    124 embryo 16-18hr    97 embryo 18-20hr    77 embryo 20-22hr    52 embryo 22-24hr    40 larva L1    92 larva L2    99 larva L3 12hr old    108 larva L3 puffstage 1-2    60 larva L3 puffstage 3-6    92 larva L3 puffstage 7-9    82 white prepupae new    83 white prepupae 12hr    82 white prepupae 24hr    111 pupae 2d postWPP    100 pupae 3d postWPP    120 pupae 4d postWPP    68 adult male 01day    74 adult male 05day    93 adult male 30day    91 adult female 01day    82 adult female 05day    102 adult female 30day    108 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (113) embryo 02-04hr  (118) embryo 04-06hr  (118) embryo 06-08hr  (180) embryo 08-10hr  (155) embryo 10-12hr  (149) embryo 12-14hr  (163) embryo 14-16hr  (124) embryo 16-18hr  (97) embryo 18-20hr  (77) embryo 20-22hr  (52) embryo 22-24hr  (40) larva L1  (92) larva L2  (99) larva L3 12hr old  (108) larva L3 puffstage 1-2  (60) larva L3 puffstage 3-6  (92) larva L3 puffstage 7-9  (82) white prepupae new  (83) white prepupae 12hr  (82) white prepupae 24hr  (111) pupae 2d postWPP  (100) pupae 3d postWPP  (120) pupae 4d postWPP  (68) adult male 01day  (74) adult male 05day  (93) adult male 30day  (91) adult female 01day  (82) adult female 05day  (102) adult female 30day  (108) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  113 embryo 02-04hr  118 embryo 04-06hr  118 embryo 06-08hr  (180) embryo 08-10hr  (155) embryo 10-12hr  (149) embryo 12-14hr  (163) embryo 14-16hr  124 embryo 16-18hr    97 embryo 18-20hr    77 embryo 20-22hr    52 embryo 22-24hr    40 larva L1    92 larva L2    99 larva L3 12hr old  108 larva L3 puffstage 1-2    60 larva L3 puffstage 3-6    92 larva L3 puffstage 7-9    82 white prepupae new    83 white prepupae 12hr    82 white prepupae 24hr  111 pupae 2d postWPP    100 pupae 3d postWPP  120 pupae 4d postWPP    68 adult male 01day    74 adult male 05day    93 adult male 30day    91 adult female 01day    82 adult female 05day  102 adult female 30day  108 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    113 embryo 02-04hr    118 embryo 04-06hr    118 embryo 06-08hr    180 embryo 08-10hr    155 embryo 10-12hr    149 embryo 12-14hr    163 embryo 14-16hr    124 embryo 16-18hr    97 embryo 18-20hr    77 embryo 20-22hr    52 embryo 22-24hr    40 larva L1    92 larva L2    99 larva L3 12hr old    108 larva L3 puffstage 1-2    60 larva L3 puffstage 3-6    92 larva L3 puffstage 7-9    82 white prepupae new    83 white prepupae 12hr    82 white prepupae 24hr    111 pupae 2d postWPP    100 pupae 3d postWPP    120 pupae 4d postWPP    68 adult male 01day    74 adult male 05day    93 adult male 30day    91 adult female 01day    82 adult female 05day    102 adult female 30day    108 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    151 Schneider line 2 Sg4    149 embryonic 1182-4H    129 embryonic GM2    147 embryonic Kc167    174 embryonic S1    135 embryonic S3    157 leg disc CME L1    151 wing disc CME-W2    217 wing disc ML-DmD8    232 wing disc ML-DmD9    215 wing disc ML-DmD16-c3    169 wing disc ML-DmD21    194 wing disc ML-DmD32    193 haltere disc ML-DmD17-c3    238 eye-antennal disc ML-DmD11    123 antennal disc ML-DmD20-c5    96 mixed discs ML-DmD4-c1    128 CNS ML-DmBG1-c1    254 CNS ML-DmBG2-c2    100 tumorous blood cells mbn2    86 ovary fGS/OSS    201 ovary OSC    255 ovary OSS    197 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (151) Schneider line 2 Sg4  (149) embryonic 1182-4H  (129) embryonic GM2  (147) embryonic Kc167  (174) embryonic S1  (135) embryonic S3  (157) leg disc CME L1  (151) wing disc CME-W2  (217) wing disc ML-DmD8  (232) wing disc ML-DmD9  (215) wing disc ML-DmD16-c3  (169) wing disc ML-DmD21  (194) wing disc ML-DmD32  (193) haltere disc ML-DmD17-c3  (238) eye-antennal disc ML-DmD11  (123) antennal disc ML-DmD20-c5  (96) mixed discs ML-DmD4-c1  (128) CNS ML-DmBG1-c1  (254) CNS ML-DmBG2-c2  (100) tumorous blood cells mbn2  (86) ovary fGS/OSS  (201) ovary OSC  (255) ovary OSS  (197) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (151) Schneider line 2 Sg4  (149) embryonic 1182-4H  (129) embryonic GM2  (147) embryonic Kc167  (174) embryonic S1  (135) embryonic S3  (157) leg disc CME L1  (151) wing disc CME-W2  (217) wing disc ML-DmD8  (232) wing disc ML-DmD9  (215) wing disc ML-DmD16-c3  (169) wing disc ML-DmD21  (194) wing disc ML-DmD32  (193) haltere disc ML-DmD17-c3  (238) eye-antennal disc ML-DmD11  (123) antennal disc ML-DmD20-c5    96 mixed discs ML-DmD4-c1  (128) CNS ML-DmBG1-c1  (254) CNS ML-DmBG2-c2    100 tumorous blood cells mbn2    86 ovary fGS/OSS  (201) ovary OSC  (255) ovary OSS  (197) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    151 Schneider line 2 Sg4    149 embryonic 1182-4H    129 embryonic GM2    147 embryonic Kc167    174 embryonic S1    135 embryonic S3    157 leg disc CME L1    151 wing disc CME-W2    217 wing disc ML-DmD8    232 wing disc ML-DmD9    215 wing disc ML-DmD16-c3    169 wing disc ML-DmD21    194 wing disc ML-DmD32    193 haltere disc ML-DmD17-c3    238 eye-antennal disc ML-DmD11    123 antennal disc ML-DmD20-c5    96 mixed discs ML-DmD4-c1    128 CNS ML-DmBG1-c1    254 CNS ML-DmBG2-c2    100 tumorous blood cells mbn2    86 ovary fGS/OSS    201 ovary OSC    255 ovary OSS    197 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    151 Schneider line 2 Sg4    149 embryonic 1182-4H    129 embryonic GM2    147 embryonic Kc167    174 embryonic S1    135 embryonic S3    157 leg disc CME L1    151 wing disc CME-W2    217 wing disc ML-DmD8    232 wing disc ML-DmD9    215 wing disc ML-DmD16-c3    169 wing disc ML-DmD21    194 wing disc ML-DmD32    193 haltere disc ML-DmD17-c3    238 eye-antennal disc ML-DmD11    123 antennal disc ML-DmD20-c5    96 mixed discs ML-DmD4-c1    128 CNS ML-DmBG1-c1    254 CNS ML-DmBG2-c2    100 tumorous blood cells mbn2    86 ovary fGS/OSS    201 ovary OSC    255 ovary OSS    197 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (151) Schneider line 2 Sg4  (149) embryonic 1182-4H  (129) embryonic GM2  (147) embryonic Kc167  (174) embryonic S1  (135) embryonic S3  (157) leg disc CME L1  (151) wing disc CME-W2  (217) wing disc ML-DmD8  (232) wing disc ML-DmD9  (215) wing disc ML-DmD16-c3  (169) wing disc ML-DmD21  (194) wing disc ML-DmD32  (193) haltere disc ML-DmD17-c3  (238) eye-antennal disc ML-DmD11  (123) antennal disc ML-DmD20-c5  (96) mixed discs ML-DmD4-c1  (128) CNS ML-DmBG1-c1  (254) CNS ML-DmBG2-c2  (100) tumorous blood cells mbn2  (86) ovary fGS/OSS  (201) ovary OSC  (255) ovary OSS  (197) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (151) Schneider line 2 Sg4  (149) embryonic 1182-4H  129 embryonic GM2  (147) embryonic Kc167  (174) embryonic S1  135 embryonic S3  (157) leg disc CME L1  (151) wing disc CME-W2  (217) wing disc ML-DmD8  (232) wing disc ML-DmD9  (215) wing disc ML-DmD16-c3  (169) wing disc ML-DmD21  (194) wing disc ML-DmD32  (193) haltere disc ML-DmD17-c3  (238) eye-antennal disc ML-DmD11  123 antennal disc ML-DmD20-c5    96 mixed discs ML-DmD4-c1  128 CNS ML-DmBG1-c1  (254) CNS ML-DmBG2-c2    100 tumorous blood cells mbn2    86 ovary fGS/OSS  (201) ovary OSC  (255) ovary OSS  (197) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    151 Schneider line 2 Sg4    149 embryonic 1182-4H    129 embryonic GM2    147 embryonic Kc167    174 embryonic S1    135 embryonic S3    157 leg disc CME L1    151 wing disc CME-W2    217 wing disc ML-DmD8    232 wing disc ML-DmD9    215 wing disc ML-DmD16-c3    169 wing disc ML-DmD21    194 wing disc ML-DmD32    193 haltere disc ML-DmD17-c3    238 eye-antennal disc ML-DmD11    123 antennal disc ML-DmD20-c5    96 mixed discs ML-DmD4-c1    128 CNS ML-DmBG1-c1    254 CNS ML-DmBG2-c2    100 tumorous blood cells mbn2    86 ovary fGS/OSS    201 ovary OSC    255 ovary OSS    197 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    90 cold shock, 4-day adult    77 heat shock, 4-day adult    121 Cadmium 50 mM 6 hrs, larvae L3    89 Cadmium 50 mM 12 hrs, larvae L3    61 Cadmium 50 mM 48 hrs, 4-day adult    116 Cadmium 100 mM 48 hrs, 4-day adult    136 Copper 0.5 mM 12 hrs, larvae L3    87 Copper 15 mM 48 hrs, 4-day adult    225 Zinc 5 mM 12 hrs, larvae L3    97 Zinc 4.5 mM 48 hrs, 4-day adult    167 Ethanol 2.5% 3 hrs, larvae L3    124 Ethanol 5% 3 hrs, larvae L3    71 Ethanol 10% 3 hrs, larvae L3    82 Caffeine 1.5 mg/ml 4 hrs, larvae L3    56 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    133 Caffeine 25 mg/ml 48 hrs, 4-day adult    96 Paraquat 5 mM 48 hrs, 4-day adult    141 Paraquat 10 mM 48 hrs, 4-day adult    129 Rotenone 2 μg 12 hrs, larvae L3    69 Rotenone 8 μg 12 hrs, larvae L3    70 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (90) cold shock, 4-day adult  (77) heat shock, 4-day adult  (121) Cadmium 50 mM 6 hrs, larvae L3  (89) Cadmium 50 mM 12 hrs, larvae L3  (61) Cadmium 50 mM 48 hrs, 4-day adult  (116) Cadmium 100 mM 48 hrs, 4-day adult  (136) Copper 0.5 mM 12 hrs, larvae L3  (87) Copper 15 mM 48 hrs, 4-day adult  (225) Zinc 5 mM 12 hrs, larvae L3  (97) Zinc 4.5 mM 48 hrs, 4-day adult  (167) Ethanol 2.5% 3 hrs, larvae L3  (124) Ethanol 5% 3 hrs, larvae L3  (71) Ethanol 10% 3 hrs, larvae L3  (82) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (56) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (133) Caffeine 25 mg/ml 48 hrs, 4-day adult  (96) Paraquat 5 mM 48 hrs, 4-day adult  (141) Paraquat 10 mM 48 hrs, 4-day adult  (129) Rotenone 2 μg 12 hrs, larvae L3  (69) Rotenone 8 μg 12 hrs, larvae L3  (70) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    90 cold shock, 4-day adult    77 heat shock, 4-day adult  (121) Cadmium 50 mM 6 hrs, larvae L3    89 Cadmium 50 mM 12 hrs, larvae L3    61 Cadmium 50 mM 48 hrs, 4-day adult  (116) Cadmium 100 mM 48 hrs, 4-day adult  (136) Copper 0.5 mM 12 hrs, larvae L3    87 Copper 15 mM 48 hrs, 4-day adult  (225) Zinc 5 mM 12 hrs, larvae L3    97 Zinc 4.5 mM 48 hrs, 4-day adult  (167) Ethanol 2.5% 3 hrs, larvae L3  (124) Ethanol 5% 3 hrs, larvae L3    71 Ethanol 10% 3 hrs, larvae L3    82 Caffeine 1.5 mg/ml 4 hrs, larvae L3    56 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (133) Caffeine 25 mg/ml 48 hrs, 4-day adult    96 Paraquat 5 mM 48 hrs, 4-day adult  (141) Paraquat 10 mM 48 hrs, 4-day adult  (129) Rotenone 2 μg 12 hrs, larvae L3    69 Rotenone 8 μg 12 hrs, larvae L3    70 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    90 cold shock, 4-day adult    77 heat shock, 4-day adult    121 Cadmium 50 mM 6 hrs, larvae L3    89 Cadmium 50 mM 12 hrs, larvae L3    61 Cadmium 50 mM 48 hrs, 4-day adult    116 Cadmium 100 mM 48 hrs, 4-day adult    136 Copper 0.5 mM 12 hrs, larvae L3    87 Copper 15 mM 48 hrs, 4-day adult    225 Zinc 5 mM 12 hrs, larvae L3    97 Zinc 4.5 mM 48 hrs, 4-day adult    167 Ethanol 2.5% 3 hrs, larvae L3    124 Ethanol 5% 3 hrs, larvae L3    71 Ethanol 10% 3 hrs, larvae L3    82 Caffeine 1.5 mg/ml 4 hrs, larvae L3    56 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    133 Caffeine 25 mg/ml 48 hrs, 4-day adult    96 Paraquat 5 mM 48 hrs, 4-day adult    141 Paraquat 10 mM 48 hrs, 4-day adult    129 Rotenone 2 μg 12 hrs, larvae L3    69 Rotenone 8 μg 12 hrs, larvae L3    70 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    90 cold shock, 4-day adult    77 heat shock, 4-day adult    121 Cadmium 50 mM 6 hrs, larvae L3    89 Cadmium 50 mM 12 hrs, larvae L3    61 Cadmium 50 mM 48 hrs, 4-day adult    116 Cadmium 100 mM 48 hrs, 4-day adult    136 Copper 0.5 mM 12 hrs, larvae L3    87 Copper 15 mM 48 hrs, 4-day adult    225 Zinc 5 mM 12 hrs, larvae L3    97 Zinc 4.5 mM 48 hrs, 4-day adult    167 Ethanol 2.5% 3 hrs, larvae L3    124 Ethanol 5% 3 hrs, larvae L3    71 Ethanol 10% 3 hrs, larvae L3    82 Caffeine 1.5 mg/ml 4 hrs, larvae L3    56 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    133 Caffeine 25 mg/ml 48 hrs, 4-day adult    96 Paraquat 5 mM 48 hrs, 4-day adult    141 Paraquat 10 mM 48 hrs, 4-day adult    129 Rotenone 2 μg 12 hrs, larvae L3    69 Rotenone 8 μg 12 hrs, larvae L3    70 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (90) cold shock, 4-day adult  (77) heat shock, 4-day adult  (121) Cadmium 50 mM 6 hrs, larvae L3  (89) Cadmium 50 mM 12 hrs, larvae L3  (61) Cadmium 50 mM 48 hrs, 4-day adult  (116) Cadmium 100 mM 48 hrs, 4-day adult  (136) Copper 0.5 mM 12 hrs, larvae L3  (87) Copper 15 mM 48 hrs, 4-day adult  (225) Zinc 5 mM 12 hrs, larvae L3  (97) Zinc 4.5 mM 48 hrs, 4-day adult  (167) Ethanol 2.5% 3 hrs, larvae L3  (124) Ethanol 5% 3 hrs, larvae L3  (71) Ethanol 10% 3 hrs, larvae L3  (82) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (56) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (133) Caffeine 25 mg/ml 48 hrs, 4-day adult  (96) Paraquat 5 mM 48 hrs, 4-day adult  (141) Paraquat 10 mM 48 hrs, 4-day adult  (129) Rotenone 2 μg 12 hrs, larvae L3  (69) Rotenone 8 μg 12 hrs, larvae L3  (70) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    90 cold shock, 4-day adult    77 heat shock, 4-day adult  121 Cadmium 50 mM 6 hrs, larvae L3    89 Cadmium 50 mM 12 hrs, larvae L3    61 Cadmium 50 mM 48 hrs, 4-day adult  116 Cadmium 100 mM 48 hrs, 4-day adult  136 Copper 0.5 mM 12 hrs, larvae L3    87 Copper 15 mM 48 hrs, 4-day adult  (225) Zinc 5 mM 12 hrs, larvae L3    97 Zinc 4.5 mM 48 hrs, 4-day adult  (167) Ethanol 2.5% 3 hrs, larvae L3  124 Ethanol 5% 3 hrs, larvae L3    71 Ethanol 10% 3 hrs, larvae L3    82 Caffeine 1.5 mg/ml 4 hrs, larvae L3    56 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  133 Caffeine 25 mg/ml 48 hrs, 4-day adult    96 Paraquat 5 mM 48 hrs, 4-day adult  141 Paraquat 10 mM 48 hrs, 4-day adult  129 Rotenone 2 μg 12 hrs, larvae L3    69 Rotenone 8 μg 12 hrs, larvae L3    70 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    90 cold shock, 4-day adult    77 heat shock, 4-day adult    121 Cadmium 50 mM 6 hrs, larvae L3    89 Cadmium 50 mM 12 hrs, larvae L3    61 Cadmium 50 mM 48 hrs, 4-day adult    116 Cadmium 100 mM 48 hrs, 4-day adult    136 Copper 0.5 mM 12 hrs, larvae L3    87 Copper 15 mM 48 hrs, 4-day adult    225 Zinc 5 mM 12 hrs, larvae L3    97 Zinc 4.5 mM 48 hrs, 4-day adult    167 Ethanol 2.5% 3 hrs, larvae L3    124 Ethanol 5% 3 hrs, larvae L3    71 Ethanol 10% 3 hrs, larvae L3    82 Caffeine 1.5 mg/ml 4 hrs, larvae L3    56 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    133 Caffeine 25 mg/ml 48 hrs, 4-day adult    96 Paraquat 5 mM 48 hrs, 4-day adult    141 Paraquat 10 mM 48 hrs, 4-day adult    129 Rotenone 2 μg 12 hrs, larvae L3    69 Rotenone 8 μg 12 hrs, larvae L3    70 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_03 mE1_20_mRNA_expression_cluster_10
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0022959 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5654-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal ypsCA06791 viable ypsJM2 viable, with Scer\GAL4pnr-MD237 ypsGD11722 viable (with Df(3L)BK9) ypsJM2 Sterility Allele female fertile ypsJM2 female fertile (with Df(3L)BK9) ypsJM2 fertile ypsJM2 Phenotype manifest in Allele
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of yps Class Mutagen Stocks Known lesion ypsc01240 piggyBac transposase 1 -- ypsCA06791 P-element activity 0 Yes ypsJM2 loss of function allele P-element activity Delta2-3 0 Yes
Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Allele of yps Class Mutagen Stocks Known lesion ypsGD11722 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes ypsGL00675 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes ypsHM05225 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes ypsHMS01694 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes ypsNIG.5654R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel6116 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD11722} NA P{NIG.5654R} NA P{TRiP.GL00675} NA P{TRiP.HM05225} NA P{TRiP.HMS01694} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}EP3078 NA P{EPgy2}EY00511 NA miscellaneous insertions P{PTT-GA}ypsCA06791 NA PBac{PB}ypsc01240 NA
Gene Ontology: Function, Process & Cellular Component ( 9 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
catalytic step 2 spliceosome inferred from direct assay (Herold et al., 2009) precatalytic spliceosome inferred from direct assay (Herold et al., 2009)
Terms Based on Predictions or Assertions ( 7 terms )
Molecular Function
CV term Evidence References
DNA binding inferred from electronic annotation with InterPro:IPR002059 (FlyBase Curators et al., 2004-) mRNA binding traceable author statement (Johnstone and Lasko, 2001) nucleic acid binding inferred from sequence or structural similarity with EMBL:M80257 AND inferred from sequence or structural similarity with NCBI:NP_003642 (Mi et al., 2001.12.13)
Biological Process
CV term Evidence References
mRNA splicing, via spliceosome inferred by curator from GO:0071011|GO:0071013 (Herold et al., 2009) oogenesis non-traceable author statement (Johnstone and Lasko, 2001) regulation of transcription, DNA-dependent inferred from electronic annotation with InterPro:IPR002059 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
nucleus inferred from sequence or structural similarity with EMBL:L35549 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
yps - exu anti tag coimmunoprecipitation, anti tag western blot, pull down, autoradiography, edman degradation (Wilhelm et al., 2000)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions yps allele Gene References ypsJM2 orb (Mansfield et al., 2002, Martin et al., 2003)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 64734 DroID - A comprehensive database of gene and protein interactions. • FBgn0022959 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39377
Orthologs
OrthoDB Orthologs (61) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6PK2VG Dipteran inclusive ortholog search EOG61G3DH Insect inclusive ortholog search EOG6B5N2P Arthropod inclusive ortholog search EOG60P2Q9 Metazoa inclusive ortholog search EOG6ZPSQF
Orthologs in Drosophila Species (EOG6PK2VG)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\yps     Drosophila simulans   Dsim\GD12750 Y   Drosophila erecta   Dere\GG13856 Y   Drosophila yakuba   Dyak\GE20150 Y   Drosophila ananassae   Dana\GF10852 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA23502 Y   Drosophila persimilis   Dper\GL15684 Y   Drosophila willistoni   Dwil\GK16710 Y   Drosophila virilis   Dvir\GJ14010 Y   Drosophila mojavensis   Dmoj\GI13673 Y   Drosophila grimshawi   Dgri\GH16919 Y
Orthologs in non-Drosophila Dipterans (EOG61G3DH)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL002060   Aedes aegypti Yellow fever mosquito  Aaeg\AAEL001375   Anopheles gambiae Malaria mosquito  Agam\AGAP006108   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ002248   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ001978
Orthologs in non-Dipteran Insects (EOG6B5N2P)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\yps   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH16075   Atta cephalotes Leafcutter ant  Acep\ACEP12641   Camponotus floridanus Florida carpenter ant  Cflo\CFLO11498   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14541   Linepithema humile Argentine ant  Lhum\LH24618   Pogonomyrmex barbatus Red harvester ant  Pbar\PB23566   Solenopsis invicta Red fire ant  Sinv\SINV21160   Acyrthosiphon pisum Pea aphid  Apim\ACYPI003867   Bombyx mori Silkmoth  Bmor\BGIBMGA000526   Pediculus humanus Human body louse  Phum\PHUM156720   Tribolium castaneum Red flour beetle  Tcas\TC013925
Orthologs in non-Insect Arthropods (EOG60P2Q9)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\OFD1   Ixodes scapularis Deer tick  Isca\ISCW011804   Ixodes scapularis Deer tick  Isca\ISCW022953   Ixodes scapularis Deer tick  Isca\ISCW021689   Ixodes scapularis Deer tick  Isca\ISCW001402   Ixodes scapularis Deer tick  Isca\ISCW005281
Orthologs in non-Arthropod Metazoa (EOG6ZPSQF)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\cey-3   Caenorhabditis elegans Nematode  Cele\cey-4   Caenorhabditis elegans Nematode  Cele\cey-1   Caenorhabditis elegans Nematode  Cele\cey-2   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_003107gn   Danio rerio Zebrafish  Drer\ybx1   Xenopus tropicalis Western clawed frog  Xtro\ybx1   Xenopus tropicalis Western clawed frog  Xtro\ybx2   Xenopus tropicalis Western clawed frog  Xtro\csda   Gallus gallus Domestic chicken  Ggal\ENSGALG00000014763   Gallus gallus Domestic chicken  Ggal\YBX1   Mus musculus House mouse  Mmus\Ybx1   Mus musculus House mouse  Mmus\Ybx2   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000038693   Rattus norvegicus Norway rat  Rnor\LOC100366210   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000011939   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000023786   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000030807   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000023294   Rattus norvegicus Norway rat  Rnor\Ybx2   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000006596   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000028740   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000043268   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000008483   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000032902   Homo sapiens Human  Hsap\YBX2   Homo sapiens Human  Hsap\YBX1
Human Orthologs (2)
Gene OMIM HGNC Hsap\YBX2     Hsap\YBX1
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD12750 Drosophila erecta Dere\GG13856 Drosophila yakuba Dyak\GE20150 Drosophila ananassae Dana\GF10852 Drosophila pseudoobscura pseudoobscura Dpse\GA23502 Drosophila persimilis Dper\GL15684 Drosophila willistoni Dwil\GK16710 Drosophila virilis Dvir\GJ14010 Drosophila mojavensis Dmoj\GI13673 Drosophila grimshawi Dgri\GH16919
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	30810 y1 sc* v1; P{TRiP.HM05225}attP2 38904 y1 sc* v1; P{TRiP.GL00675}attP2 38250 y1 sc* v1; P{TRiP.HMS01694}attP40
Harvard	- PBac{PB}ypsc01240
VDRC	v27472 w1118; P{GD11722}v27472 v27473 w1118; P{GD11722}v27473
Genomic Clones ( 2 )
	BACR05P17 BACR14K14 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 278 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH18372 LD37574
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT13728 AT27910 GH09111 GH13417 GH14325 GH23979 GH25594 GH26096 GH26242 GM02535 GM03816 GM14045 GM24717 LD01538 LD01826 LD18388 LD24311 LD24668 LD27691 LD29271 LD29296 LD31263 LD32908 LD33457 LD33862 LD33950 LD34073 LD34636 LD36969 LD37090 LD39656 LD41314 LD43501 LD46683 LD48093 LP01147 LP01845 LP02408 LP09868 LP10207 LP12090 LP14196 RE01420 RE02188 RE03868 RE11061 RE13988 RE15212 RE23333 RE25031 RE26518 RE28094 RE28358 RE29683 RE31614 RE31714 RE31994 RE37734 RE39559 RE47307 RE47908 RE63065 RE64987 RE69814 RE73903 RH04937 RH05229 RH11092 RH11171 RH13363 RH21437 RH22513 RH24943 RH43166 RH51641 RH54669 RH57228 RH58835 RH60592 RH71495 RH74663 SD05840 SD05846 SD10895 SD14190 SD20807 SD21940 SD27013 SD27381 SD27707 SD27733 SD27891
Other clones	17954 17984 18428 47307 50350 51218 52957 60891 76105 76303 80153 80339 97010 99078 105716 119002 149803 161909 162299 178670 180147 191442 214481.42 273086 273371 527868 558172 569228 AT31767 bs15b05 bs49b03 CK01.28C.E11 CK01.36D.E11 CK01.51B.F8 CK01.65C.D5 CK01.75B.D11 CK01.80C.D8 CK01.80D.D3 CK01.83C.H2 CK01.89B.A6 CK01.98C.E7 CK01.106B.C10 CK01.118B.C9 CK01.120B.A10 Dmel_neb_005230_0179_3611 Dmel_neb_013045_0185_2247 Dmel_neb_013154_0175_1573 Dmel_neb_013743_0924_2297 Dmel_neb_013769_0384_3323 Dmel_neb_013842_0335_1294 Dmel_neb_014183_0584_1972 Dmel_neb_015073_0391_1442 EK024618 EK031220 EK041956 EK053315 EK058916 EK062348 EK062514 EK066661 EK070127 EK070302 EK088643 EK089911 EK116705 EK130454 EK130710 EK131317 EK163936 EK170131 EK177136 EK185836 EK212657 EK219335 EK227960 EK230953 EK238624 EK255455 EK260306 EK265562 EK266093 EK293627 EN13134 EP03519 ESG016b.E21_G08 FGH110G09 FGM101G10 FGM230E06 IP13058 RE01821 RP003066331 RP003076209 RP003079889 RP003085913 RP003099112 RP003112801 RP003113239 RP003116732 RP003130474 RP003133833 RP003136295 RP003137184 RP003139346 RP003140594 RP003156163 RP003157077 RP003157584 RP003164227 RP003164581 RP003177115 RP003181138 RP003182232 RP003182724 RP003202164 RP003205054 RP003206711 RP003207219 RP003211046 RP003223307 RP003271642 RP003272161 RP003287677 RP003289260 RP003294442 RP003304794 RP003318256 RP003327502 RP003331400 RP003333306 RP003336170 RP003339877 RP003343176 RP003348593 RP003349415 RP003354642 RP003362700 RP003375051 RP003380349 RP003386429 RP003400632 RP003403945 RP003405549 RP003412306 RP003415498 RP003441435 RP003443109 RP003473586 RP003475342 RP003480204 RP003483856 RP003484040 RP003488249 RP003490395 RP003499580 RP003501208 RP003504575 RP003517878 RP003523624 RP003534681 RP003541596 RP003557118 RP003566514 RP003570475 RP003595090 RP003598019 RP003598728 RP003603245 RP003605751 RP003618422 RP003620736 RP003622955 RP003633202 RP003633255 RP003636974 RP003644764 RP003645424 RP003646155 RP003652475 RP003654085 RP003657210 RP003665538 RP003668791 RP003673306 UUGC0294
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0022959 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39377
Antibody Information
	polyclonal (Wilhelm et al., 2000)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: yps CG5654 (Zhang, 1999.11)
Source for database merge of
Additional comments
Other Comments
	yps acts antagonistically to orb. (Mansfield et al., 2002) Identification: identified as a protein that coimmunoprecipitates specifically with exu protein. (Wilhelm et al., 2000) yps has been cloned and sequenced, and its expression pattern has been analysed. (Thieringer et al., 1997)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_079309 NM_001259801 RefSeq (Proteins) • NP_524033 NP_001246730 DDBJ / EMBL / GenBank • AAB94634 AAF49961 AAL25354 AAL28988 AFH04401 AI387736 AI404324 AI518147 AI945643 AW940702 AW943389 AY060315 AY061440 CZ467010 U49120 Entrez Gene - A searchable database of RefSeq genes. • 39377 UniProtKB/TrEMBL • O46173 Q95RE4 Q95T63
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Cold-shock protein, DNA-binding (IPR002059) Cold shock protein (IPR011129) Nucleic acid-binding, OB-fold (IPR012340) Cold-shock conserved site (IPR019844)
Linkouts
	BioGRID - A database of protein and genetic interactions • 64734 DroID - A comprehensive database of gene and protein interactions. • FBgn0022959 DRSC - Results from RNAi screens. • FBgn0022959 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0022959 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5654-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0022959 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 39377 Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution • /torstoll/ypschtl1.htm InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 39377 modMine - Data generated by the modENCODE project. • FBgn0022959
Synonyms & Secondary IDs ( 10 )
Reported As
Symbol Synonym	CG5654 (Duncan et al., 2006, Labourier et al., 2002, Mount, 2001.8.14, Perkins et al., 2009, Pisa et al., 2009, Herold et al., 2009, Cammarato et al., 2011, Ni et al., 2010.12.1) p45 (Wilhelm et al., 2000) p57 (Wilhelm et al., 2000) Yps (Wilhelm et al., 2003, Lipshitz and Smibert, 2000, Mansfield et al., 2000, Lin et al., 2006, Wilhelm et al., 2005, Boylan et al., 2008, Pisa et al., 2009, Dienstbier et al., 2009, Gonsalvez et al., 2010, Temme et al., 2010) YPS (Matsumoto and Wolffe, 1998, Forler et al., 2004) yps (Mack et al., 2006, Buszczak et al., 2007, Herold et al., 2009, Djiane et al., 2011, Thomsen et al., 2010, Abruzzi et al., 2011, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym	Ypsilon Schachtel (Serbus et al., 2001, Mansfield et al., 2000, Gouw et al., 2009) ypsilon schachtel (Thieringer et al., 1997, Cammarato et al., 2011) Ypsilon schachtel (Boylan et al., 2008, Pisa et al., 2009, Temme et al., 2010) Ypsilon Schactel (Wilhelm et al., 2005)
Secondary FlyBase IDs
References ( 63 )
Generate a list of	All references relating to this gene ( 63 )
List References by type	Research paper  ( 24 ) Supplementary material  ( 5 ) Review  ( 5 ) Personal communication to FlyBase  ( 12 ) Abstract  ( 11 ) FlyBase analysis  ( 1 ) Stock list  ( 1 ) Curated genome annotation  ( 2 ) DNA/RNA sequence record  ( 1 )
Recent research papers ( 3 )
	Abruzzi et al., 2011, Genes Dev. 25(22): 2374--2386 Drosophila CLOCK target gene characterization: implications for circadian tissue-specific gene expression. [FBrf0216798] Djiane et al., 2011, J. Cell Biol. 192(1): 189--200 Su(dx) E3 ubiquitin ligase-dependent and -independent functions of Polychaetoid, the Drosophila ZO-1 homologue. [FBrf0212737] Shimada et al., 2011, Dev. Biol. 355(2): 250--262 Reversible response of protein localization and microtubule organization to nutrient stress during Drosophila early oogenesis. [FBrf0213933] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...