FB2020_06, released Dec 22, 2020

Gene: Dmel\qkr54B

Open Close
General Information
Symbol
Dmel\qkr54B
Species
D. melanogaster
Name
quaking related 54B
Annotation Symbol
CG4816
Feature Type
protein_coding_gene
FlyBase ID
FBgn0022987
Gene Model Status
Current
Stock Availability
6 publicly available
Gene Snapshot
Contributions welcome
Other Summaries
Also Known As

Sam50

Key Links
Genomic Location
Cytogenetic map
54B16-54B16
Sequence location
2R:17,469,624..17,475,129 [+]
Recombination map

2-82

RefSeq locus
NT_033778 REGION:17469624..17475129
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Gene Ontology (GO) Annotations (5 terms)
Molecular Function (2 terms)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
enables RNA binding
inferred from direct assay
(Di Fruscio et al., 1998)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
enables mRNA binding
inferred from biological aspect of ancestor with PANTHER:PTN000129548
(assigned by GO_Central )
(Gaudet et al., 2011)
Biological Process (1 term)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
involved_in regulation of alternative mRNA splicing, via spliceosome
inferred from biological aspect of ancestor with PANTHER:PTN000129548
(assigned by GO_Central )
(Gaudet et al., 2011)
Cellular Component (2 terms)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
located_in cytoplasm
inferred from direct assay
(Di Fruscio et al., 1998)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
located_in nucleus
inferred from biological aspect of ancestor with PANTHER:PTN000129548
(assigned by GO_Central )
(Gaudet et al., 2011)
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
Summaries
Gene Model and Products
Number of Transcripts
4
Number of Unique Polypeptides
2

Please see the JBrowse view of Dmel\qkr54B for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model

gene_with_stop_codon_read_through ; SO:0000697

Stop-codon suppression (UGA) postulated (FBrf0219254, FlyBase analysis, supported by preponderance of gene model predictions.

Gene model reviewed during 5.44

Gene model reviewed during 5.48

Tissue-specific extension of 3' UTRs observed during later stages (FBrf0218523, FBrf0219848); all variants may not be annotated

Sequence Ontology: Class of Gene
gene_with_stop_codon_read_through
(FlyBase Genome Annotators, 2012)
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
qkr54B-RA
FBtr0086923
NM_166230
2201
428
qkr54B-RB
FBtr0086925
NM_079048
2551
428
qkr54B-RD
FBtr0306248
NM_166231
3482
428
qkr54B-RE
FBtr0331464
NM_001274121
3963
617
Additional Transcript Data and Comments
Reported size (kB)

4.6, 4.0, 2.8, 2.5 (northern blot)

(Di Fruscio et al., 1998)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
qkr54B-PA
FBpp0086079
46.5
428
8.23
NP_725679
AAF57857
qkr54B-PB
FBpp0086081
46.5
428
8.23
NP_523772
AAM70876
qkr54B-PD
FBpp0297358
46.5
428
8.23
NP_725680
AAM70877
qkr54B-PE
FBpp0303881
66.7
617
8.99
NP_001261050
AGB93582
Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

428 aa isoforms: qkr54B-PA, qkr54B-PB, qkr54B-PD
Additional Polypeptide Data and Comments
Reported size (kDa)

428 (aa)

(Di Fruscio et al., 1998)
Comments

A Myc-epitope-tagged qkr54B protein expressed in HeLa cells migrates with a molecular mass of approximately 50 kD. qkr54B protein binds homopolymeric RNA in vitro (poly(A) and poly(U)), and the GSG domain is necessary but not sufficient for RNA binding. qkr54B protein can associate into homomultimers, and the GSG domain is necessary for this self-association. A GFPFBtr0091350:pb-XRqkr54B fusion protein activates apoptotic pathways in mouse NIH 3T3 and Drosophila S2 cells.

(Di Fruscio et al., 1998)
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\qkr54B using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage 1 -- 3
organism

Comment: maternally deposited

(Fisher et al., 2012)
embryonic stage 4 -- 6
organism
(Fisher et al., 2012)
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
oogenesis & adult stage | female
ovary
(Di Fruscio et al., 1998)
adult stage | female
(Di Fruscio et al., 1998)
embryonic stage -- adult stage
(Di Fruscio et al., 1998)
embryonic stage 1 -- 9

Comment: reference states 0-4 hr AEL

(Di Fruscio et al., 1998)
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data

A GFPFBtr0091350:pb-XRqkr54B fusion protein localizes to the cytoplasm of mouse NIH 3T3 and Drosophila S2 cells.

(Di Fruscio et al., 1998)
Marker for
 
Subcellular Localization
CV Term
Evidence
References
located_in cytoplasm
inferred from direct assay
(Di Fruscio et al., 1998)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\qkr54B in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyBase Wiki
Image Based Resources
Alleles, Insertions, and Transgenic Constructs
Classical and Insertion Alleles ( 1 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of qkr54B
Transgenic constructs containing regulatory region of qkr54B
Deletions and Duplications ( 1 )
Phenotypes
For more details about a specific phenotype click on the relevant allele symbol.
Lethality
Allele
viable, with Dcr-2UAS.cDa, Scer\GAL4elav.PLu
viable, with Scer\GAL4Mef2.PR
viable, with Scer\GAL4pnr-MD237
viable, with Scer\GAL4tin.CΔ4
Phenotype manifest in
Allele
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v8.0)
Homo sapiens (Human) (6)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\KHDRBS3
12 of 15
Yes
Yes
Hsap\KHDRBS1
11 of 15
No
Yes
Hsap\KHDRBS2
11 of 15
No
Yes
Hsap\QKI
2 of 15
No
No
Hsap\MTRNR2L9
1 of 15
No
Yes
Hsap\SF1
1 of 15
No
No
Model Organism Orthologs (via DIOPT v8.0)
Mus musculus (laboratory mouse) (5)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Khdrbs3
12 of 15
Yes
Yes
Mmus\Khdrbs1
11 of 15
No
Yes
Mmus\Khdrbs2
11 of 15
No
Yes
Mmus\Qk
2 of 15
No
No
Mmus\Sf1
1 of 15
No
No
Rattus norvegicus (Norway rat) (5)
Rnor\Khdrbs3
12 of 13
Yes
Yes
Rnor\Khdrbs2
11 of 13
No
Yes
Rnor\Khdrbs1
9 of 13
No
Yes
Rnor\Qk
1 of 13
No
No
Rnor\Sf1
1 of 13
No
No
Xenopus tropicalis (Western clawed frog) (5)
Xtro\khdrbs2
11 of 12
Yes
Yes
Xtro\khdrbs3
8 of 12
No
Yes
Xtro\khdrbs1
7 of 12
No
Yes
Xtro\qki
2 of 12
No
No
Xtro\sf1
1 of 12
No
No
Danio rerio (Zebrafish) (8)
Drer\khdrbs2
12 of 15
Yes
Yes
Drer\khdrbs1b
10 of 15
No
Yes
Drer\khdrbs1a
9 of 15
No
Yes
Drer\khdrbs3
5 of 15
No
Yes
Drer\qki2
2 of 15
No
No
Drer\qkia
2 of 15
No
No
Drer\qkib
2 of 15
No
No
Drer\sf1
1 of 15
No
No
Caenorhabditis elegans (Nematode, roundworm) (9)
Cele\E02D9.1
3 of 15
Yes
Yes
Cele\asd-2
1 of 15
No
No
Cele\B0280.17
1 of 15
No
No
Cele\F54D1.1
1 of 15
No
No
Cele\gld-1
1 of 15
No
No
Cele\K07H8.9
1 of 15
No
No
Cele\sfa-1
1 of 15
No
No
Cele\vamp-7
1 of 15
No
No
Cele\Y69A2AR.32
1 of 15
No
No
Arabidopsis thaliana (thale-cress) (5)
Atha\AT2G38610
2 of 9
Yes
No
Atha\AT1G09660
1 of 9
No
No
Atha\AT3G08620
1 of 9
No
No
Atha\AT4G26480
1 of 9
No
No
Atha\AT5G56140
1 of 9
No
No
Saccharomyces cerevisiae (Brewer's yeast) (1)
Scer\MSL5
1 of 15
Yes
No
Schizosaccharomyces pombe (Fission yeast) (0)
No records found.
Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( EOG09190D83 )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00003571
Drosophila simulans
Dsim\GD11271
Drosophila sechellia
Dsec\GM21780
Drosophila sechellia
Dsec\GM24584
Drosophila erecta
Dere\GG20683
Drosophila yakuba
Dyak\GE11667
Drosophila ananassae
Dana\GF13124
Drosophila pseudoobscura pseudoobscura
Dpse\GA18453
Drosophila persimilis
Dper\GL11428
Drosophila willistoni
Dwil\GK22901
Drosophila virilis
Dvir\GJ20374
Drosophila mojavensis
Dmoj\GI18580
Drosophila grimshawi
Dgri\GH21401
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091508L0 )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17016627
Musca domestica
House fly
Mdoa\17016626
Musca domestica
House fly
Mdoa\17016630
Glossina morsitans
Tsetse fly
Gmor\GMOY002396
Glossina morsitans
Tsetse fly
Gmor\GMOY002390
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_12461
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_12465
Mayetiola destructor
Hessian fly
Mdes\Mdes013137
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL005358
Anopheles darlingi
American malaria mosquito
Adar\ADAC006146
Anopheles gambiae
Malaria mosquito
Agam\AGAP003356
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ014324
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W09AJ )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA014153
Bombyx mori
Silkmoth
Bmor\BGIBMGA014155
Bombyx mori
Silkmoth
Bmor\BGIBMGA014152
Danaus plexippus
Monarch butterfly
Dple\DPOGS216167-PA
Danaus plexippus
Monarch butterfly
Dple\DPOGS216170-PA
Heliconius melpomene
Postman butterfly
Hmel\HMEL002747
Heliconius melpomene
Postman butterfly
Hmel\HMEL012737
Apis florea
Little honeybee
Aflo\2291386356
Apis mellifera
Western honey bee
Amel\GB50757
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP25482
Bombus terrestris
Buff-tailed bumblebee
Bter\15217118
Linepithema humile
Argentine ant
Lhum\LH19664
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:0007fb
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG011603
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG011589
Tribolium castaneum
Red flour beetle
Tcas\TC009970
Tribolium castaneum
Red flour beetle
Tcas\qkr
Pediculus humanus
Human body louse
Phum\PHUM363880
Rhodnius prolixus
Kissing bug
Rpro\RPRC001420
Rhodnius prolixus
Kissing bug
Rpro\RPRC013412
Cimex lectularius
Bed bug
Clec\CLEC002069
Cimex lectularius
Bed bug
Clec\CLEC002068
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI004115
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI006047
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_06098
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_18703
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_06095
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X096V )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strigamia maritima
European centipede
Smar\SMAR005986
Strigamia maritima
European centipede
Smar\SMAR010424
Stegodyphus mimosarum
African social velvet spider
Smim\KFM57102.1
Tetranychus urticae
Two-spotted spider mite
Turt\tetur05g09240
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_7657
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G0EED )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Khdrbh2
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Qki
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000002548
Ciona intestinalis
Vase tunicate
Cint\LOC100179888
Gallus gallus
Domestic chicken
Ggal\QKI
Gallus gallus
Domestic chicken
Ggal\KHDRBS3
Gallus gallus
Domestic chicken
Ggal\KHDRBS2
Gallus gallus
Domestic chicken
Ggal\KHDRBS1
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v8.0)
Drosophila melanogaster (Fruit fly) (9)
Gene Symbol
Score
Source
Compara
eggNOG
Homologene
Inparanoid
Isobase
OrthoDB
OrthoFinder
orthoMCL
Panther
RoundUp
Alignment
qkr58E-1
8 of 10
qkr58E-2
5 of 10
CG3927
4 of 10
CG4021
4 of 10
nsr
4 of 10
qkr58E-3
4 of 10
CG10384
3 of 10
how
3 of 10
SF1
3 of 10
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Model Summary Ribbon
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 0 )
    Human Ortholog
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    KHDRBS3; KH RNA binding domain containing, signal transduction associated 3
    12 of 15
    610421
        KHDRBS1; KH RNA binding domain containing, signal transduction associated 1
        11 of 15
        602489
            KHDRBS2; KH RNA binding domain containing, signal transduction associated 2
            11 of 15
            610487
                Functional Complementation Data
                Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
                Interactions
                Summary of Physical Interactions
                Summary of Genetic Interactions
                esyN Network Diagram
                esyN Network Key:
                Suppression
                Enhancement
                View in Interactions Browser
                Please look at the allele data for full details of the genetic interactions
                Starting gene(s)
                Interaction type
                Interacting gene(s)
                Reference
                Starting gene(s)
                Interaction type
                Interacting gene(s)
                Reference
                H
                enhanceable
                CG14478|Tes|qkr54B
                (Coumailleau and Schweisguth, 2014)
                H
                enhanceable
                CG14478|Tes|insb|qkr54B
                (Coumailleau and Schweisguth, 2014)
                H|insv
                enhanceable
                CG14478|Tes|insb|qkr54B
                (Coumailleau and Schweisguth, 2014)
                External Data
                Linkouts
                BioGRID - A database of protein and genetic interactions.
                DroID - A comprehensive database of gene and protein interactions.
                InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
                MIST (protein-protein) - An integrated Molecular Interaction Database
                Pathways
                Signaling Pathways (FlyBase)
                Metabolic Pathways
                External Data
                Linkouts
                Genomic Location and Detailed Mapping Data
                Chromosome (arm)
                2R
                Recombination map

                2-82

                Cytogenetic map
                54B16-54B16
                Sequence location
                2R:17,469,624..17,475,129 [+]
                FlyBase Computed Cytological Location
                Cytogenetic map
                Evidence for location
                54B16-54B16
                Limits computationally determined from genome sequence between P{EP}l(2)k01209EP2177&P{lacW}k11012a and P{lacW}l(2)k07433k07433
                Experimentally Determined Cytological Location
                Cytogenetic map
                Notes
                References
                54B-54B
                (Fyrberg, 1997.12.16)
                54C-54C
                (Di Fruscio, 1998.10.1)
                54B-54B
                (determined by in situ hybridisation)
                (Fyrberg et al., 1998)
                Experimentally Determined Recombination Data
                Location

                2-82

                (FlyBase, 2016)

                2-86.2

                (Comeron et al., 2012)
                Left of (cM)
                Right of (cM)
                Notes
                Stocks and Reagents
                Stocks (6)
                Genomic Clones (8)
                 

                Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

                cDNA Clones (69)
                 

                Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

                cDNA clones, fully sequenced
                BDGP DGC clones
                Other clones
                Drosophila Genomics Resource Center cDNA clones

                For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

                cDNA Clones, End Sequenced (ESTs)
                BDGP DGC clones
                Other clones
                RNAi and Array Information
                Linkouts
                DRSC - Results frm RNAi screens
                GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
                Antibody Information
                Laboratory Generated Antibodies
                 
                Commercially Available Antibodies
                 
                Other Information
                Relationship to Other Genes
                Source for database identify of
                Source for database merge of

                Source for merge of: qkr54B Sam50

                (FlyBase, 1996-)
                Additional comments

                Source for merge of qkr54B Sam50 was sequence comparison ( date:000114 ).

                (FlyBase, 1996-)
                Other Comments
                Origin and Etymology
                Discoverer
                Etymology
                Identification
                External Crossreferences and Linkouts ( 48 )
                Sequence Crossreferences
                NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
                GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
                GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
                RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
                UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
                Other crossreferences
                BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
                Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
                Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
                Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
                Flygut - An atlas of the Drosophila adult midgut
                GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
                iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
                InterPro - A database of protein families, domains and functional sites
                KEGG Genes - Molecular building blocks of life in the genomic space.
                modMine - A data warehouse for the modENCODE project
                Linkouts
                BioGRID - A database of protein and genetic interactions.
                DPiM - Drosophila Protein interaction map
                DroID - A comprehensive database of gene and protein interactions.
                DRSC - Results frm RNAi screens
                FLIGHT - Cell culture data for RNAi and other high-throughput technologies
                FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
                FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
                FlyMine - An integrated database for Drosophila genomics
                InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
                MIST (protein-protein) - An integrated Molecular Interaction Database
                Synonyms and Secondary IDs (11)
                Datasets (0)
                Study focus (0)
                Experimental Role
                Project
                Project Type
                Title
                References (48)