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Gene Dmel\Nmd3

General Information
Symbol	Dmel\Nmd3	Species	D. melanogaster
Name	Nonsense-mediated mRNA 3	Annotation symbol	CG3460
Feature type	protein_coding_gene	FlyBase ID	FBgn0023542
Gene Model Status	Current	Stock availability	4 publicly available
Also Known As	EG:152A3.1, TcD12
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	2E1-2E1	Sequence location	X:2,076,851..2,078,688 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Nonsense-mediated mRNA 3 is referred to in FlyBase by the symbol Dmel\Nmd3 (CG3460, FBgn0023542). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: mRNA binding. There is experimental evidence that it is involved in the biological process: neurogenesis. 4 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has one annotated transcript and one annotated polypeptide. Protein features are: NMD3. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 06-12 and 18-24 hour embryonic stages, during early larval stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1623733_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Nmd3. Gene sequence location is X:2076851..2078688.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10	References Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593
FB2012_01	Sequence features BKN20744 HFA18687
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 2E1-2E1   Limits computationally determined from genome sequence between P{EP}ActnEP1193&P{EP}CG4322EP1631 and P{EP}EP1460&P{EP}CG2924EP1596
Experimentally Determined Cytological Location
Cytogenetic map Notes References 2E-2E     (Alatortsev, 1999.4.29)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Nmd3 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.39
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Nmd3-RA FBtr0070425  NM_057984   1778   521
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Nmd3-PA   FBpp0070409   59.1   521   5.97     NP_477332   AAF45744
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • NMD3 (IPR007064)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA439239   AA802724   AA821149   AE014298 AAF45744   AI114390   AI387841   AI519019   AI534971   AI543429   AJ238705 CAB42049   AY058494 AAL13723   BG632606   BI164008   BI166739   BI243339   BI354050   BI354667   BI354772   BI355046   BI355722   BI483687   BI579137   BI580062   BI617833   BI617889   BI626665   BI640659   BI641170   CO189208   CO190731   CO292355   EC068797   EC068798   EC075080   EC229818   GH747755   GH748611   GH751269   GH754691   GH755227   GH758283   GH759936   GH770214   GH772956   GH777856   GH785906   GH787049   GH794661   GH800266   GH806897   GH808915   GH810001   GH823739   GH824742   GH831303   GH833407   GH837132   GH837789   GH837931   GH839122   GH845166   GH845234   GH847280   GH854384   GH873706   GH878137   GH880004   GH881585   GH885470   GH885831   GH896463   GH896868   GH901242   GH901406   GH906656   GH906880   GH909449   GH910076   GH913026   GH914425   GH926526
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	O46050 Q9UB80
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0023542    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0023542 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 06-12 and 18-24 hour embryonic stages, during early larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0023542 expression level Developmental Stage   Expression Level embryo 00-02hr    2953 embryo 02-04hr    1390 embryo 04-06hr    3269 embryo 06-08hr    4323 embryo 08-10hr    4052 embryo 10-12hr    3711 embryo 12-14hr    2592 embryo 14-16hr    2115 embryo 16-18hr    1906 embryo 18-20hr    2022 embryo 20-22hr    4220 embryo 22-24hr    3513 larva L1    6693 larva L2    3121 larva L3 12hr old    2094 larva L3 puffstage 1-2    1292 larva L3 puffstage 3-6    1249 larva L3 puffstage 7-9    1318 white prepupae new    1100 white prepupae 12hr    1096 white prepupae 24hr    929 pupae 2d postWPP    941 pupae 3d postWPP    727 pupae 4d postWPP    970 adult male 01day    1122 adult male 05day    1230 adult male 30day    1338 adult female 01day    3319 adult female 05day    3470 adult female 30day    3588 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2953) embryo 02-04hr  (1390) embryo 04-06hr  (3269) embryo 06-08hr  (4323) embryo 08-10hr  (4052) embryo 10-12hr  (3711) embryo 12-14hr  (2592) embryo 14-16hr  (2115) embryo 16-18hr  (1906) embryo 18-20hr  (2022) embryo 20-22hr  (4220) embryo 22-24hr  (3513) larva L1  (6693) larva L2  (3121) larva L3 12hr old  (2094) larva L3 puffstage 1-2  (1292) larva L3 puffstage 3-6  (1249) larva L3 puffstage 7-9  (1318) white prepupae new  (1100) white prepupae 12hr  (1096) white prepupae 24hr  (929) pupae 2d postWPP  (941) pupae 3d postWPP  (727) pupae 4d postWPP  (970) adult male 01day  (1122) adult male 05day  (1230) adult male 30day  (1338) adult female 01day  (3319) adult female 05day  (3470) adult female 30day  (3588) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2953) embryo 02-04hr    1390 embryo 04-06hr  (3269) embryo 06-08hr  (4323) embryo 08-10hr  (4052) embryo 10-12hr  (3711) embryo 12-14hr  (2592) embryo 14-16hr  (2115) embryo 16-18hr  (1906) embryo 18-20hr  (2022) embryo 20-22hr  (4220) embryo 22-24hr  (3513) larva L1  (6693) larva L2  (3121) larva L3 12hr old  (2094) larva L3 puffstage 1-2    1292 larva L3 puffstage 3-6    1249 larva L3 puffstage 7-9    1318 white prepupae new    1100 white prepupae 12hr    1096 white prepupae 24hr    929 pupae 2d postWPP    941 pupae 3d postWPP    727 pupae 4d postWPP    970 adult male 01day    1122 adult male 05day    1230 adult male 30day    1338 adult female 01day  (3319) adult female 05day  (3470) adult female 30day  (3588) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2953 embryo 02-04hr    1390 embryo 04-06hr    3269 embryo 06-08hr    4323 embryo 08-10hr    4052 embryo 10-12hr    3711 embryo 12-14hr    2592 embryo 14-16hr    2115 embryo 16-18hr    1906 embryo 18-20hr    2022 embryo 20-22hr    4220 embryo 22-24hr    3513 larva L1    6693 larva L2    3121 larva L3 12hr old    2094 larva L3 puffstage 1-2    1292 larva L3 puffstage 3-6    1249 larva L3 puffstage 7-9    1318 white prepupae new    1100 white prepupae 12hr    1096 white prepupae 24hr    929 pupae 2d postWPP    941 pupae 3d postWPP    727 pupae 4d postWPP    970 adult male 01day    1122 adult male 05day    1230 adult male 30day    1338 adult female 01day    3319 adult female 05day    3470 adult female 30day    3588 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2953 embryo 02-04hr    1390 embryo 04-06hr    3269 embryo 06-08hr    4323 embryo 08-10hr    4052 embryo 10-12hr    3711 embryo 12-14hr    2592 embryo 14-16hr    2115 embryo 16-18hr    1906 embryo 18-20hr    2022 embryo 20-22hr    4220 embryo 22-24hr    3513 larva L1    6693 larva L2    3121 larva L3 12hr old    2094 larva L3 puffstage 1-2    1292 larva L3 puffstage 3-6    1249 larva L3 puffstage 7-9    1318 white prepupae new    1100 white prepupae 12hr    1096 white prepupae 24hr    929 pupae 2d postWPP    941 pupae 3d postWPP    727 pupae 4d postWPP    970 adult male 01day    1122 adult male 05day    1230 adult male 30day    1338 adult female 01day    3319 adult female 05day    3470 adult female 30day    3588 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0023542 expression level Developmental Stage   Expression Level embryo 00-02hr    2953 embryo 02-04hr    1390 embryo 04-06hr    3269 embryo 06-08hr    4323 embryo 08-10hr    4052 embryo 10-12hr    3711 embryo 12-14hr    2592 embryo 14-16hr    2115 embryo 16-18hr    1906 embryo 18-20hr    2022 embryo 20-22hr    4220 embryo 22-24hr    3513 larva L1    6693 larva L2    3121 larva L3 12hr old    2094 larva L3 puffstage 1-2    1292 larva L3 puffstage 3-6    1249 larva L3 puffstage 7-9    1318 white prepupae new    1100 white prepupae 12hr    1096 white prepupae 24hr    929 pupae 2d postWPP    941 pupae 3d postWPP    727 pupae 4d postWPP    970 adult male 01day    1122 adult male 05day    1230 adult male 30day    1338 adult female 01day    3319 adult female 05day    3470 adult female 30day    3588 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2953) embryo 02-04hr  (1390) embryo 04-06hr  (3269) embryo 06-08hr  (4323) embryo 08-10hr  (4052) embryo 10-12hr  (3711) embryo 12-14hr  (2592) embryo 14-16hr  (2115) embryo 16-18hr  (1906) embryo 18-20hr  (2022) embryo 20-22hr  (4220) embryo 22-24hr  (3513) larva L1  (6693) larva L2  (3121) larva L3 12hr old  (2094) larva L3 puffstage 1-2  (1292) larva L3 puffstage 3-6  (1249) larva L3 puffstage 7-9  (1318) white prepupae new  (1100) white prepupae 12hr  (1096) white prepupae 24hr  (929) pupae 2d postWPP  (941) pupae 3d postWPP  (727) pupae 4d postWPP  (970) adult male 01day  (1122) adult male 05day  (1230) adult male 30day  (1338) adult female 01day  (3319) adult female 05day  (3470) adult female 30day  (3588) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2953) embryo 02-04hr    1390 embryo 04-06hr  (3269) embryo 06-08hr  (4323) embryo 08-10hr  (4052) embryo 10-12hr  (3711) embryo 12-14hr  (2592) embryo 14-16hr  2115 embryo 16-18hr  1906 embryo 18-20hr  2022 embryo 20-22hr  (4220) embryo 22-24hr  (3513) larva L1  (6693) larva L2  (3121) larva L3 12hr old  2094 larva L3 puffstage 1-2    1292 larva L3 puffstage 3-6    1249 larva L3 puffstage 7-9    1318 white prepupae new    1100 white prepupae 12hr    1096 white prepupae 24hr    929 pupae 2d postWPP    941 pupae 3d postWPP    727 pupae 4d postWPP    970 adult male 01day    1122 adult male 05day    1230 adult male 30day    1338 adult female 01day  (3319) adult female 05day  (3470) adult female 30day  (3588) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2953 embryo 02-04hr    1390 embryo 04-06hr    3269 embryo 06-08hr    4323 embryo 08-10hr    4052 embryo 10-12hr    3711 embryo 12-14hr    2592 embryo 14-16hr    2115 embryo 16-18hr    1906 embryo 18-20hr    2022 embryo 20-22hr    4220 embryo 22-24hr    3513 larva L1    6693 larva L2    3121 larva L3 12hr old    2094 larva L3 puffstage 1-2    1292 larva L3 puffstage 3-6    1249 larva L3 puffstage 7-9    1318 white prepupae new    1100 white prepupae 12hr    1096 white prepupae 24hr    929 pupae 2d postWPP    941 pupae 3d postWPP    727 pupae 4d postWPP    970 adult male 01day    1122 adult male 05day    1230 adult male 30day    1338 adult female 01day    3319 adult female 05day    3470 adult female 30day    3588 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2953 embryo 02-04hr    1390 embryo 04-06hr    3269 embryo 06-08hr    4323 embryo 08-10hr    4052 embryo 10-12hr    3711 embryo 12-14hr    2592 embryo 14-16hr    2115 embryo 16-18hr    1906 embryo 18-20hr    2022 embryo 20-22hr    4220 embryo 22-24hr    3513 larva L1    6693 larva L2    3121 larva L3 12hr old    2094 larva L3 puffstage 1-2    1292 larva L3 puffstage 3-6    1249 larva L3 puffstage 7-9    1318 white prepupae new    1100 white prepupae 12hr    1096 white prepupae 24hr    929 pupae 2d postWPP    941 pupae 3d postWPP    727 pupae 4d postWPP    970 adult male 01day    1122 adult male 05day    1230 adult male 30day    1338 adult female 01day    3319 adult female 05day    3470 adult female 30day    3588 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0023542    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0023542 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0023542 expression level Tissue   Expression Level Larval Central Nervous System    201.375 Larval Midgut    93.6 Larval Hindgut    184.3 Larval Malpighian Tubules    136.3 Larval Fat Body    127.7 Larval Salivary Gland    185.9 Larval Trachea    317.125 Larval Carcass    203.625 Adult Head    193.2 Adult Eye    172 Adult Brain    130.6 Adult Thoracic-Abdominal Ganglion    127.5 Adult Crop    239.9 Adult Midgut    164.4 Adult Hindgut    221 Adult Malpighian Tubules    323.3 Adult Fat Body    338.5 Adult Salivary Gland    197.3 Adult Heart    307.6 Adult VirginFemale Spermatheca    364.3 Adult InseminatedFemale Spermatheca    424.8 Adult Ovary    342.4 Adult Testis    35.9 Adult Male Accessory Gland    385.1 Adult Carcass    264.5 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    201.375 Larval Midgut    93.6 Larval Hindgut    184.3 Larval Malpighian Tubules    136.3 Larval Fat Body    127.7 Larval Salivary Gland    185.9 Larval Trachea    317.125 Larval Carcass    203.625 Adult Head    193.2 Adult Eye    172 Adult Brain    130.6 Adult Thoracic-Abdominal Ganglion    127.5 Adult Crop    239.9 Adult Midgut    164.4 Adult Hindgut    221 Adult Malpighian Tubules    323.3 Adult Fat Body    338.5 Adult Salivary Gland    197.3 Adult Heart    307.6 Adult VirginFemale Spermatheca    364.3 Adult InseminatedFemale Spermatheca    424.8 Adult Ovary    342.4 Adult Testis    35.9 Adult Male Accessory Gland    385.1 Adult Carcass    264.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    201.375 Larval Midgut    93.6 Larval Hindgut    184.3 Larval Malpighian Tubules    136.3 Larval Fat Body    127.7 Larval Salivary Gland    185.9 Larval Trachea    317.125 Larval Carcass    203.625 Adult Head    193.2 Adult Eye    172 Adult Brain    130.6 Adult Thoracic-Abdominal Ganglion    127.5 Adult Crop    239.9 Adult Midgut    164.4 Adult Hindgut    221 Adult Malpighian Tubules    323.3 Adult Fat Body    338.5 Adult Salivary Gland    197.3 Adult Heart    307.6 Adult VirginFemale Spermatheca    364.3 Adult InseminatedFemale Spermatheca    424.8 Adult Ovary    342.4 Adult Testis    35.9 Adult Male Accessory Gland    385.1 Adult Carcass    264.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    201.375 Larval Midgut    93.6 Larval Hindgut    184.3 Larval Malpighian Tubules    136.3 Larval Fat Body    127.7 Larval Salivary Gland    185.9 Larval Trachea    317.125 Larval Carcass    203.625 Adult Head    193.2 Adult Eye    172 Adult Brain    130.6 Adult Thoracic-Abdominal Ganglion    127.5 Adult Crop    239.9 Adult Midgut    164.4 Adult Hindgut    221 Adult Malpighian Tubules    323.3 Adult Fat Body    338.5 Adult Salivary Gland    197.3 Adult Heart    307.6 Adult VirginFemale Spermatheca    364.3 Adult InseminatedFemale Spermatheca    424.8 Adult Ovary    342.4 Adult Testis    35.9 Adult Male Accessory Gland    385.1 Adult Carcass    264.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0023542 expression level Tissue   Expression Level Larval Central Nervous System    201.375 Larval Midgut    93.6 Larval Hindgut    184.3 Larval Malpighian Tubules    136.3 Larval Fat Body    127.7 Larval Salivary Gland    185.9 Larval Trachea    317.125 Larval Carcass    203.625 Adult Head    193.2 Adult Eye    172 Adult Brain    130.6 Adult Thoracic-Abdominal Ganglion    127.5 Adult Crop    239.9 Adult Midgut    164.4 Adult Hindgut    221 Adult Malpighian Tubules    323.3 Adult Fat Body    338.5 Adult Salivary Gland    197.3 Adult Heart    307.6 Adult VirginFemale Spermatheca    364.3 Adult InseminatedFemale Spermatheca    424.8 Adult Ovary    342.4 Adult Testis    35.9 Adult Male Accessory Gland    385.1 Adult Carcass    264.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    201.375 Larval Midgut    93.6 Larval Hindgut    184.3 Larval Malpighian Tubules    136.3 Larval Fat Body    127.7 Larval Salivary Gland    185.9 Larval Trachea    317.125 Larval Carcass    203.625 Adult Head    193.2 Adult Eye    172 Adult Brain    130.6 Adult Thoracic-Abdominal Ganglion    127.5 Adult Crop    239.9 Adult Midgut    164.4 Adult Hindgut    221 Adult Malpighian Tubules    323.3 Adult Fat Body    338.5 Adult Salivary Gland    197.3 Adult Heart    307.6 Adult VirginFemale Spermatheca    364.3 Adult InseminatedFemale Spermatheca    424.8 Adult Ovary    342.4 Adult Testis    35.9 Adult Male Accessory Gland    385.1 Adult Carcass    264.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    201.375 Larval Midgut    93.6 Larval Hindgut    184.3 Larval Malpighian Tubules    136.3 Larval Fat Body    127.7 Larval Salivary Gland    185.9 Larval Trachea    317.125 Larval Carcass    203.625 Adult Head    193.2 Adult Eye    172 Adult Brain    130.6 Adult Thoracic-Abdominal Ganglion    127.5 Adult Crop    239.9 Adult Midgut    164.4 Adult Hindgut    221 Adult Malpighian Tubules    323.3 Adult Fat Body    338.5 Adult Salivary Gland    197.3 Adult Heart    307.6 Adult VirginFemale Spermatheca    364.3 Adult InseminatedFemale Spermatheca    424.8 Adult Ovary    342.4 Adult Testis    35.9 Adult Male Accessory Gland    385.1 Adult Carcass    264.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    201.375 Larval Midgut    93.6 Larval Hindgut    184.3 Larval Malpighian Tubules    136.3 Larval Fat Body    127.7 Larval Salivary Gland    185.9 Larval Trachea    317.125 Larval Carcass    203.625 Adult Head    193.2 Adult Eye    172 Adult Brain    130.6 Adult Thoracic-Abdominal Ganglion    127.5 Adult Crop    239.9 Adult Midgut    164.4 Adult Hindgut    221 Adult Malpighian Tubules    323.3 Adult Fat Body    338.5 Adult Salivary Gland    197.3 Adult Heart    307.6 Adult VirginFemale Spermatheca    364.3 Adult InseminatedFemale Spermatheca    424.8 Adult Ovary    342.4 Adult Testis    35.9 Adult Male Accessory Gland    385.1 Adult Carcass    264.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    193.2   NA  Eye    172   NA  Brain    130.6   201.375  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    127.5   NA  Crop    239.9   93.6  Midgut    164.4   184.3  Hindgut    221   136.3  Malpighian Tubules    323.3   127.7  Fat Body    338.5   185.9  Salivary Gland    197.3   NA  Heart    307.6   317.125  Trachea    NA   NA  VirginFemale Spermatheca    364.3   NA  InseminatedFemale Spermatheca    424.8   NA  Ovary    342.4   NA  Testis    35.9   NA  Male Accessory Gland    385.1   203.625  Carcass    264.5 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_08
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0023542 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3460-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Nmd3 Stages(s) 1-3 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL41407 Nmd3GD10975 semi-lethal | pupal stage, with Scer\GAL4pnr-MD237 Nmd3GD10975 Other Phenotypes Allele neuroanatomy defective | larval stage, with Scer\GAL41407 Nmd3GD10975 visible, with Scer\GAL4pnr-MD237 Nmd3GD10975 Phenotype manifest in Allele embryonic/larval neuroblast | larval stage, with Scer\GAL41407 Nmd3GD10975 ganglion mother cell | larval stage, with Scer\GAL41407 Nmd3GD10975 mesothoracic tergum, with Scer\GAL4pnr-MD237 Nmd3GD10975
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of Nmd3 Class Mutagen Stocks Known lesion Nmd35-SZ-4064 1 -- Nmd3G17502 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Nmd3 Class Mutagen Stocks Known lesion Nmd3GD10975 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Nmd3KK100648 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(1)Exel6289 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10975} NA P{KK100648} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{RS5}Nmd35-SZ-4064 NA insertion of mobile activating element P{EP}Nmd3G17502 NA
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
mRNA binding inferred from sequence or structural similarity with Saccharomyces NMD3 (FlyBase, 1992-)
Biological Process
CV term Evidence References
ribosomal large subunit export from nucleus inferred from sequence or structural similarity with Saccharomyces NMD3 (FlyBase, 1992-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Nmd3 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 57735 DroID - A comprehensive database of gene and protein interactions. • FBgn0023542 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31195
Orthologs
Genome-wide drosophilid orthologs	Dana\GF21978 Dere\GG12643 Dgri\GH17705 Dmoj\GI11082 Dper\GL13399 Dpse\GA17465 Dsec\GM18910 Dsim\GD13524 Dvir\GJ15765 Dwil\GK17003 Dyak\GE16971
Curated drosophilid orthologs	Dpse\GA17465
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL003039-PA Aedes aegypti (mosquito) AGAP005375-PA Anopheles gambiae (mosquito) XP_624393.1 Apis mellifera (honey bee) XP_001952313.1 Acyrthosiphon pisum (pea aphid) At2g03820.1 Arabidopsis thaliana (wall cress) 8015 Batrachochytrium dendrobatidis (chytrid fungus) 133093 Branchiostoma floridae (lancelet) XP_001896961.1 Brugia malayi (roundworm nematode) BGIBMGA012547-PA Bombyx mori (silk worm) ENSBTAP00000021594 Bos taurus (bovine) CAL0001704 Candida albicans (a form of yeast) CN19709 Caenorhabditis brenneri (small nematode) CN30545 Caenorhabditis brenneri (small nematode) CBP02897 Caenorhabditis briggsae (nematode) CE30306 Caenorhabditis elegans (worm) ENSCAFP00000021181 Canis familiaris (dog) CAGL0I02398g Candida glabrata (haploid yeast) Chro.30166 Cryptosporidium hominis (obligate parasite) JA14649 Caenorhabditis japonica (nematode) CMT194C Cyanidioschyzon merolae (red alga) cn11196 Cryptococcus neoformans (yeast-like fungus) cgd3_1340 Cryptosporidium parvum (protozoan parasite) CPIJ012889 Culex pipens (mosquito) CPIJ014885 Culex pipens (mosquito) ENSCPOP00000005373 Cavia porcellus (guinea pig) 194349 Chlamidomonas reinhardtii (green alga) RP03465 Caenorhabditis remanei (nematode) ENSCSAVP00000001923 Ciona savignyi (sedentary tunicate) 174567 Capitella spl (polychaete worm) DDB0302495 Dictyostelium discoideum (amoeba) DEHA2G23496g Debaryomyces Hansenii (yeast) 194355 Daphnia pulex (daphnia) ENSDARP00000012858 Danio rerio (zebra fish) ENSECAP00000000221 Equus caballus (horse) XP_648084 Entamoeba histolytica (anaerobic protozoan) XP_655041 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000013321 Gymnopilus aculeatus (mushroom) ENSGALP00000015500 Gallus gallus (chicken) GL50803_24860 Giardia lamblia (flagellated protozoan) 187554 Hypsipyla robusta (cedar shoot borer) ENSP00000307525 Homo sapiens (human) ISCW014702-PA Ixodes scapularis (deer tick) KLLA0A05159g Kluyveromyces lactis (yeast) 206277 Lottia gigantea (owl limpet) LmjF26.0970 Leishmania major (virus) 34439 Monocosta brevicollis (choanoflagellate) ENSMODP00000022149 Monodelphis domestica (gray opossum) ENSMMUP00000012502 Macaca mulatta (rhesus monkey) ENSMUSP00000029358 Mus musculus (house mouse) 144377 Nematostella vectensis (starlet anemone) XP_001603805.1 Nasonia vitripennis (wasp) ENSORLP00000007886 Oryzias latipes (japanese killifish) LOC_Os10g42320.1 Oryza sativa (asian rice) 37111 Ostreococcus tauri (green alga) PHUM003622-PA Pediculus humanus (human body louse) 132997 Physcomitrella patens (moss) ENSPPYP00000015946 Pongo pygmaeus (orangutan) 85227 Phytophthora ramorum (sudden oak death pathogen) 109580 Phytophthora sojae (root rot pathogen) 555983 Populus trichocarpa (black cottonwood) 800704 Populus trichocarpa (black cottonwood) ENSPTRP00000026821 Pan troglodytes (chimpanzee) ENSRNOP00000012417 Rattus norvegicus (norway rat) 147335 Sorghum bicolor (sorghum) YHR170W Saccharomyces cerevisiae (budding yeast) Smp_076630.2 Schistosoma mansoni (trematode parasite) SPAC16C9.03 Schizosaccharomyces pombe (fission yeast) XP_788633.2 Strongylocentrotus purpuratus (purple sea urchin) 27425 Trichoplax adhaerens (metazoa) TA05875 Theileria annulata (apicomplexan parasite) XP_967150.1 Tribolium castaneum (red flour beetle) Tc00.1047053506729.90 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000010529 Tetraodon nigroviridis (green spotted pufferfish) TP01_0828 Theileria parva (parasitic protozoan) 29018 Thalassiosira pseudonana (marine diatom) ENSTRUP00000014488 Takifugu rubripes (pufferfish Takifugu) 3686.m00014 Tetrahymena thermophila (ciliate protozoa) 92145.m00157 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000057710 Xenopus tropicalis (frog) YALI0F08151g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB12125 NV17707 LH23605 ISCW014702 FBgn0234458 FBgn0219002 FBgn0202953 FBgn0185235 FBgn0173813 JGI_V11_194355 FBgn0077476 FBgn0151005 FBgn0133844 FBgn0125175 FBgn0104931 FBgn0098977 CPIJ014132 BGIBMGA012547 ACYPI005321 GB16635 AGAP005375 AAEL003039 PHUM372100 GLEAN_11038
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	33315 P{EP}Nmd3G17502 w*
Kyoto	126320 P{RS5}Nmd35-SZ-4064 w1118
VDRC	v105619 P{KK100648}VIE-260B v46165 w1118; P{GD10975}v46165/CyO
Genomic Clones ( 2 )
	BACR32O19 BACR48O22 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 75 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM14705
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH18510 GM06217 GM26104 GM27813 GM28231 GM29328 GM32104 LD13746 RE03562 RE06947 RE40947 RE66610 RE73121 RE74190 RH48283 RH48355 RH67669 SD01275 SD10173 SD23617 SD24378
Other clones	71707 CK01.21A.F1 CK01.53D.G5 EK043427 EK049421 EK199915 GH11261 RP003036412 RP003039596 RP003040143 RP003044136 RP003054153 RP003070065 RP003087277 RP003090094 RP003116819 RP003118746 RP003137704 RP003157991 RP003166123 RP003175226 RP003206165 RP003206674 RP003214527 RP003221724 RP003226859 RP003264871 RP003283116 RP003290442 RP003309488 RP003342302 RP003380036 RP003383774 RP003387391 RP003398603 RP003400521 RP003409436 RP003420494 RP003431540 RP003436797 RP003480075 RP003482965 RP003484534 RP003491429 RP003502790 RP003511911 RP003547480 RP003593727 RP003611878 RP003636246 RP003637176 RP003662725 RP003663345
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0023542 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31195
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: EG:152A3.1 anon-2Eb (Gatt and Ashburner, 2000.2.3)
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_057984 RefSeq (Proteins) • NP_477332 DDBJ / EMBL / GenBank • AA439239 AA821149 AAF45744 AAL13723 AI519019 AJ238705 AL009194 AY058494 CAB42049 Entrez Gene - A searchable database of RefSeq genes. • 31195 UniProtKB/TrEMBL • O46050 Q9UB80
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • NMD3 (IPR007064)
Linkouts
	BioGRID - A database of protein and genetic interactions • 57735 DroID - A comprehensive database of gene and protein interactions. • FBgn0023542 DRSC - Results from RNAi screens. • FBgn0023542 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0023542 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3460-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0023542 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31195 InParanoid A subset of ortholog calls from InParanoid. • AAEL003039-PA Aedes aegypti (mosquito) AGAP005375-PA Anopheles gambiae (mosquito) XP_624393.1 Apis mellifera (honey bee) XP_001952313.1 Acyrthosiphon pisum (pea aphid) At2g03820.1 Arabidopsis thaliana (wall cress) 8015 Batrachochytrium dendrobatidis (chytrid fungus) 133093 Branchiostoma floridae (lancelet) XP_001896961.1 Brugia malayi (roundworm nematode) BGIBMGA012547-PA Bombyx mori (silk worm) ENSBTAP00000021594 Bos taurus (bovine) CAL0001704 Candida albicans (a form of yeast) CN19709 Caenorhabditis brenneri (small nematode) CN30545 Caenorhabditis brenneri (small nematode) CBP02897 Caenorhabditis briggsae (nematode) CE30306 Caenorhabditis elegans (worm) ENSCAFP00000021181 Canis familiaris (dog) CAGL0I02398g Candida glabrata (haploid yeast) Chro.30166 Cryptosporidium hominis (obligate parasite) JA14649 Caenorhabditis japonica (nematode) CMT194C Cyanidioschyzon merolae (red alga) cn11196 Cryptococcus neoformans (yeast-like fungus) cgd3_1340 Cryptosporidium parvum (protozoan parasite) CPIJ012889 Culex pipens (mosquito) CPIJ014885 Culex pipens (mosquito) ENSCPOP00000005373 Cavia porcellus (guinea pig) 194349 Chlamidomonas reinhardtii (green alga) RP03465 Caenorhabditis remanei (nematode) ENSCSAVP00000001923 Ciona savignyi (sedentary tunicate) 174567 Capitella spl (polychaete worm) DDB0302495 Dictyostelium discoideum (amoeba) DEHA2G23496g Debaryomyces Hansenii (yeast) 194355 Daphnia pulex (daphnia) ENSDARP00000012858 Danio rerio (zebra fish) ENSECAP00000000221 Equus caballus (horse) XP_648084 Entamoeba histolytica (anaerobic protozoan) XP_655041 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000013321 Gymnopilus aculeatus (mushroom) ENSGALP00000015500 Gallus gallus (chicken) GL50803_24860 Giardia lamblia (flagellated protozoan) 187554 Hypsipyla robusta (cedar shoot borer) ENSP00000307525 Homo sapiens (human) ISCW014702-PA Ixodes scapularis (deer tick) KLLA0A05159g Kluyveromyces lactis (yeast) 206277 Lottia gigantea (owl limpet) LmjF26.0970 Leishmania major (virus) 34439 Monocosta brevicollis (choanoflagellate) ENSMODP00000022149 Monodelphis domestica (gray opossum) ENSMMUP00000012502 Macaca mulatta (rhesus monkey) ENSMUSP00000029358 Mus musculus (house mouse) 144377 Nematostella vectensis (starlet anemone) XP_001603805.1 Nasonia vitripennis (wasp) ENSORLP00000007886 Oryzias latipes (japanese killifish) LOC_Os10g42320.1 Oryza sativa (asian rice) 37111 Ostreococcus tauri (green alga) PHUM003622-PA Pediculus humanus (human body louse) 132997 Physcomitrella patens (moss) ENSPPYP00000015946 Pongo pygmaeus (orangutan) 85227 Phytophthora ramorum (sudden oak death pathogen) 109580 Phytophthora sojae (root rot pathogen) 555983 Populus trichocarpa (black cottonwood) 800704 Populus trichocarpa (black cottonwood) ENSPTRP00000026821 Pan troglodytes (chimpanzee) ENSRNOP00000012417 Rattus norvegicus (norway rat) 147335 Sorghum bicolor (sorghum) YHR170W Saccharomyces cerevisiae (budding yeast) Smp_076630.2 Schistosoma mansoni (trematode parasite) SPAC16C9.03 Schizosaccharomyces pombe (fission yeast) XP_788633.2 Strongylocentrotus purpuratus (purple sea urchin) 27425 Trichoplax adhaerens (metazoa) TA05875 Theileria annulata (apicomplexan parasite) XP_967150.1 Tribolium castaneum (red flour beetle) Tc00.1047053506729.90 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000010529 Tetraodon nigroviridis (green spotted pufferfish) TP01_0828 Theileria parva (parasitic protozoan) 29018 Thalassiosira pseudonana (marine diatom) ENSTRUP00000014488 Takifugu rubripes (pufferfish Takifugu) 3686.m00014 Tetrahymena thermophila (ciliate protozoa) 92145.m00157 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000057710 Xenopus tropicalis (frog) YALI0F08151g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31195 modMine - Data generated by the modENCODE project. • FBgn0023542 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB12125 NV17707 LH23605 ISCW014702 FBgn0234458 FBgn0219002 FBgn0202953 FBgn0185235 FBgn0173813 JGI_V11_194355 FBgn0077476 FBgn0151005 FBgn0133844 FBgn0125175 FBgn0104931 FBgn0098977 CPIJ014132 BGIBMGA012547 ACYPI005321 GB16635 AGAP005375 AAEL003039 PHUM372100 GLEAN_11038
Synonyms & Secondary IDs ( 10 )
Reported As
Symbol Synonym	anon-2Eb   CG3460 (Benos, 2000.12.13, Legube et al., 2006, Larschan et al., 2007, Keleman et al., 2009.8.5) dNmd3   EG:152A3.1 (Benos et al., 2001, Benos, 2000.12.13, ) II (Teng et al., 1991) Nmd3 (Neumüller et al., 2011) TcD12 (Gandhi et al., 1992, Teng et al., 1991) TcD13 (Teng et al., 1991)
Name Synonym	Nonsense-mediated mRNA 3   transcription unit III (Teng et al., 1991)
Secondary FlyBase IDs
	FBgn0014089
References ( 26 )
Generate a list of	All references relating to this gene ( 26 )
List References by type	Research paper  ( 9 ) Supplementary material  ( 5 ) Personal communication to FlyBase  ( 7 ) FlyBase analysis  ( 3 ) DNA/RNA sequence record  ( 1 ) Computer file  ( 1 )
Recent research papers ( 1 )
	Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593 Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi. [FBrf0213621] Show all research papers ...