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Gene Dmel\bbx

General Information
Symbol	Dmel\bbx	Species	D. melanogaster
Name	bobby sox	Annotation symbol	CG1414
Feature type	protein_coding_gene	FlyBase ID	FBgn0024251
Gene Model Status	Current	Stock availability	8 publicly available
Also Known As	CG32527
Genomic Location
Chromosome (arm)	X	Recombination map	1-
Cytogenetic map	19F5-19F6	Sequence location	X:21,234,055..21,244,175 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene bobby sox is referred to in FlyBase by the symbol Dmel\bbx (CG1414, FBgn0024251). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: sequence-specific DNA binding transcription factor activity; DNA binding. Based on sequence similarity, it is predicted to be involved in the biological process: regulation of transcription, DNA-dependent. 11 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: High mobility group (HMG) box domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 and 18-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. This gene is annotated by FlyBase as a dicistronic gene, meaning that some or all of its transcripts encode two or more polypeptide-coding open reading frames (ORFs) , with each ORF assigned to a different gene. The distribution of RNA-Seq coverage data amongst the different encoded genes cannot be determined. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult central nervous system, adult Malpighian tubules, larval/adult salivary gland, adult ovary, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval trachea, adult spermathecae, adult male accessory gland. Comments on Affy2 ProbeSet: ProbeSet 1627668_s_at aligns to a genomic region shared by exons of 2 FlyBase-annotated genes; hence it is impossible to interpret the expression pattern and levels of waw expression signal. See the GBrowse view of waw to determine the overlapping gene(s). Gene sequence location is X:21234055..21244175.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 19F5-19F6   Limits computationally determined from genome sequence between P{EP}CG1702EP1525 and P{EP}EP1465&P{EP}CG1486EP1192
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location	1-
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\bbx for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	gene_with_dicistronic_mRNA ; SO:0000722 Gene model reviewed during 5.45
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) bbx-RB FBtr0100598  NM_001031917   5453   769 bbx-RC FBtr0100599  NM_001031916   3369   769 bbx-RD FBtr0331744  NM_001272841   3337   769 bbx-RE FBtr0331745  NM_001272842   3619   769
Additional Transcript Data & Comments
Reported size (kB)	3.5 (northern blot) (Hayward et al., 1993)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein bbx-PB   FBpp0100055   83.8   769   6.92     NP_001027088   AAF50823 bbx-PC   FBpp0100056   83.8   769   6.92     NP_001027087   AAN09678 bbx-PD   FBpp0304133   83.8   769   6.92     NP_001259770   AGB95608 bbx-PE   FBpp0304134   83.8   769   6.92     NP_001259771   AGB95609
Additional Polypeptide Data & Comments
Reported size (kDa)	769 (aa) (Maleszka et al., 1998)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • High mobility group (HMG) box domain (IPR009071)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA696372   AE014298 AAF50823   AE014298 AAN09678   AF017777 AAC28404   AE014298 AGB95608   AE014298 AGB95609   AI136005   AI297994   AI533783   AI544397   AQ254769   AW944674   AY094952 AAM11305   BF492628   BF492638   BF492639   BF503138   BF506514   BG633726   BG635617   BH011546   BI237345   BI371668   BI564674   BI579185   BI620292   BI622039   BI627743   BI627925   BI630823   BI637029   BT003601 AAO39604   BT132996   CL528175   CO179983   CO185455   CO188512   CO268971   CO299172   CO299311   CO304780   CO307244   CO313089   CO314796   CO317202   CO319072   CO320932   CO321669   CO329205   CO332907   CO333715   CO342256   EC057792   EC066986   EC067980   EC068494   EC078064   EC090425   EC200464   EC202484   EC202957   EC205472   EC208582   EC225657   EC239293   EC249394   EC250643   EC265245   EV587274   EV587319   EV588341   EV588916   EV589037   EV589261   EV590228   EV590467   EV591264
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	O61348 Q86NW8
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   organism | faint & ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult central nervous system, adult Malpighian tubules, larval/adult salivary gland, adult ovary, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval trachea, adult spermathecae, adult male accessory gland. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    236.35 Larval Midgut    365.8 Larval Hindgut    360.5 Larval Malpighian Tubules    444.9 Larval Fat Body    349.8 Larval Salivary Gland    814 Larval Trachea    194.9 Larval Carcass    521.35 Adult Head    336.8 Adult Eye    390.7 Adult Brain    692.2 Adult Thoracic-Abdominal Ganglion    617.8 Adult Crop    309.2 Adult Midgut    200.9 Adult Hindgut    399.9 Adult Malpighian Tubules    522.1 Adult Fat Body    343.6 Adult Salivary Gland    639.7 Adult Heart    246.1 Adult VirginFemale Spermatheca    394.3 Adult InseminatedFemale Spermatheca    357.9 Adult Ovary    503.2 Adult Testis    66.1 Adult Male Accessory Gland    359.9 Adult Carcass    504.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    236.35 Larval Midgut    365.8 Larval Hindgut    360.5 Larval Malpighian Tubules    444.9 Larval Fat Body    349.8 Larval Salivary Gland  (814) Larval Trachea    194.9 Larval Carcass  521.35 Adult Head    336.8 Adult Eye    390.7 Adult Brain  (692.2) Adult Thoracic-Abdominal Ganglion  (617.8) Adult Crop    309.2 Adult Midgut    200.9 Adult Hindgut    399.9 Adult Malpighian Tubules  522.1 Adult Fat Body    343.6 Adult Salivary Gland  (639.7) Adult Heart    246.1 Adult VirginFemale Spermatheca    394.3 Adult InseminatedFemale Spermatheca    357.9 Adult Ovary  503.2 Adult Testis    66.1 Adult Male Accessory Gland    359.9 Adult Carcass  504.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    236.35 Larval Midgut    365.8 Larval Hindgut    360.5 Larval Malpighian Tubules    444.9 Larval Fat Body    349.8 Larval Salivary Gland    814 Larval Trachea    194.9 Larval Carcass    521.35 Adult Head    336.8 Adult Eye    390.7 Adult Brain    692.2 Adult Thoracic-Abdominal Ganglion    617.8 Adult Crop    309.2 Adult Midgut    200.9 Adult Hindgut    399.9 Adult Malpighian Tubules    522.1 Adult Fat Body    343.6 Adult Salivary Gland    639.7 Adult Heart    246.1 Adult VirginFemale Spermatheca    394.3 Adult InseminatedFemale Spermatheca    357.9 Adult Ovary    503.2 Adult Testis    66.1 Adult Male Accessory Gland    359.9 Adult Carcass    504.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    236.35 Larval Midgut    365.8 Larval Hindgut    360.5 Larval Malpighian Tubules    444.9 Larval Fat Body    349.8 Larval Salivary Gland    814 Larval Trachea    194.9 Larval Carcass    521.35 Adult Head    336.8 Adult Eye    390.7 Adult Brain    692.2 Adult Thoracic-Abdominal Ganglion    617.8 Adult Crop    309.2 Adult Midgut    200.9 Adult Hindgut    399.9 Adult Malpighian Tubules    522.1 Adult Fat Body    343.6 Adult Salivary Gland    639.7 Adult Heart    246.1 Adult VirginFemale Spermatheca    394.3 Adult InseminatedFemale Spermatheca    357.9 Adult Ovary    503.2 Adult Testis    66.1 Adult Male Accessory Gland    359.9 Adult Carcass    504.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    236.35 Larval Midgut    365.8 Larval Hindgut    360.5 Larval Malpighian Tubules    444.9 Larval Fat Body    349.8 Larval Salivary Gland    814 Larval Trachea    194.9 Larval Carcass    521.35 Adult Head    336.8 Adult Eye    390.7 Adult Brain    692.2 Adult Thoracic-Abdominal Ganglion    617.8 Adult Crop    309.2 Adult Midgut    200.9 Adult Hindgut    399.9 Adult Malpighian Tubules    522.1 Adult Fat Body    343.6 Adult Salivary Gland    639.7 Adult Heart    246.1 Adult VirginFemale Spermatheca    394.3 Adult InseminatedFemale Spermatheca    357.9 Adult Ovary    503.2 Adult Testis    66.1 Adult Male Accessory Gland    359.9 Adult Carcass    504.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    236.35 Larval Midgut    365.8 Larval Hindgut    360.5 Larval Malpighian Tubules    444.9 Larval Fat Body    349.8 Larval Salivary Gland  814 Larval Trachea    194.9 Larval Carcass  521.35 Adult Head    336.8 Adult Eye    390.7 Adult Brain  692.2 Adult Thoracic-Abdominal Ganglion  617.8 Adult Crop    309.2 Adult Midgut    200.9 Adult Hindgut    399.9 Adult Malpighian Tubules  522.1 Adult Fat Body    343.6 Adult Salivary Gland  639.7 Adult Heart    246.1 Adult VirginFemale Spermatheca    394.3 Adult InseminatedFemale Spermatheca    357.9 Adult Ovary  503.2 Adult Testis    66.1 Adult Male Accessory Gland    359.9 Adult Carcass  504.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    236.35 Larval Midgut    365.8 Larval Hindgut    360.5 Larval Malpighian Tubules    444.9 Larval Fat Body    349.8 Larval Salivary Gland    814 Larval Trachea    194.9 Larval Carcass    521.35 Adult Head    336.8 Adult Eye    390.7 Adult Brain    692.2 Adult Thoracic-Abdominal Ganglion    617.8 Adult Crop    309.2 Adult Midgut    200.9 Adult Hindgut    399.9 Adult Malpighian Tubules    522.1 Adult Fat Body    343.6 Adult Salivary Gland    639.7 Adult Heart    246.1 Adult VirginFemale Spermatheca    394.3 Adult InseminatedFemale Spermatheca    357.9 Adult Ovary    503.2 Adult Testis    66.1 Adult Male Accessory Gland    359.9 Adult Carcass    504.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    236.35 Larval Midgut    365.8 Larval Hindgut    360.5 Larval Malpighian Tubules    444.9 Larval Fat Body    349.8 Larval Salivary Gland    814 Larval Trachea    194.9 Larval Carcass    521.35 Adult Head    336.8 Adult Eye    390.7 Adult Brain    692.2 Adult Thoracic-Abdominal Ganglion    617.8 Adult Crop    309.2 Adult Midgut    200.9 Adult Hindgut    399.9 Adult Malpighian Tubules    522.1 Adult Fat Body    343.6 Adult Salivary Gland    639.7 Adult Heart    246.1 Adult VirginFemale Spermatheca    394.3 Adult InseminatedFemale Spermatheca    357.9 Adult Ovary    503.2 Adult Testis    66.1 Adult Male Accessory Gland    359.9 Adult Carcass    504.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    336.8   NA  Eye    390.7   NA  Brain    692.2   236.35  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    617.8   NA  Crop    309.2   365.8  Midgut    200.9   360.5  Hindgut    399.9   444.9  Malpighian Tubules    522.1   349.8  Fat Body    343.6   814  Salivary Gland    639.7   NA  Heart    246.1   194.9  Trachea    NA   NA  VirginFemale Spermatheca    394.3   NA  InseminatedFemale Spermatheca    357.9   NA  Ovary    503.2   NA  Testis    66.1   NA  Male Accessory Gland    359.9   521.35  Carcass    504.5 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    10 central nervous system, pupae P8    5 head, virgin 1-day female    30 head, virgin 4-day female    24 head, virgin 20-day female    14 head, mated 1-day female    27 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male    38 head, mated 4-day male    30 head, mated 20-day male    29 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    14 digestive system, 4-day adult    14 digestive system, 20-day adult    13 fat body, larvae L3 wandering    19 fat body, white prepupae    9 fat body, pupae P8    4 carcass, larvae L3 wandering    27 carcass, 1-day adult    32 carcass, 4-day adult    26 carcass, 20-day adult    20 ovary, virgin 4-day female    43 ovary, mated 4-day female    52 testis, mated 4-day male    9 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    10 central nervous system, pupae P8    5 head, virgin 1-day female  (30) head, virgin 4-day female    24 head, virgin 20-day female    14 head, mated 1-day female  (27) head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male  (38) head, mated 4-day male  (30) head, mated 20-day male  (29) salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    14 digestive system, 4-day adult    14 digestive system, 20-day adult    13 fat body, larvae L3 wandering    19 fat body, white prepupae    9 fat body, pupae P8    4 carcass, larvae L3 wandering  (27) carcass, 1-day adult  (32) carcass, 4-day adult  26 carcass, 20-day adult    20 ovary, virgin 4-day female  (43) ovary, mated 4-day female  (52) testis, mated 4-day male    9 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    10 central nervous system, pupae P8    5 head, virgin 1-day female    30 head, virgin 4-day female    24 head, virgin 20-day female    14 head, mated 1-day female    27 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male    38 head, mated 4-day male    30 head, mated 20-day male    29 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    14 digestive system, 4-day adult    14 digestive system, 20-day adult    13 fat body, larvae L3 wandering    19 fat body, white prepupae    9 fat body, pupae P8    4 carcass, larvae L3 wandering    27 carcass, 1-day adult    32 carcass, 4-day adult    26 carcass, 20-day adult    20 ovary, virgin 4-day female    43 ovary, mated 4-day female    52 testis, mated 4-day male    9 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    10 central nervous system, pupae P8    5 head, virgin 1-day female    30 head, virgin 4-day female    24 head, virgin 20-day female    14 head, mated 1-day female    27 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male    38 head, mated 4-day male    30 head, mated 20-day male    29 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    14 digestive system, 4-day adult    14 digestive system, 20-day adult    13 fat body, larvae L3 wandering    19 fat body, white prepupae    9 fat body, pupae P8    4 carcass, larvae L3 wandering    27 carcass, 1-day adult    32 carcass, 4-day adult    26 carcass, 20-day adult    20 ovary, virgin 4-day female    43 ovary, mated 4-day female    52 testis, mated 4-day male    9 accessory gland, mated 4-day male    9 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    10 central nervous system, pupae P8    5 head, virgin 1-day female    30 head, virgin 4-day female    24 head, virgin 20-day female    14 head, mated 1-day female    27 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male    38 head, mated 4-day male    30 head, mated 20-day male    29 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    14 digestive system, 4-day adult    14 digestive system, 20-day adult    13 fat body, larvae L3 wandering    19 fat body, white prepupae    9 fat body, pupae P8    4 carcass, larvae L3 wandering    27 carcass, 1-day adult    32 carcass, 4-day adult    26 carcass, 20-day adult    20 ovary, virgin 4-day female    43 ovary, mated 4-day female    52 testis, mated 4-day male    9 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    10 central nervous system, pupae P8    5 head, virgin 1-day female  30 head, virgin 4-day female    24 head, virgin 20-day female    14 head, mated 1-day female  27 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male  (38) head, mated 4-day male  30 head, mated 20-day male  29 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    14 digestive system, 4-day adult    14 digestive system, 20-day adult    13 fat body, larvae L3 wandering    19 fat body, white prepupae    9 fat body, pupae P8    4 carcass, larvae L3 wandering  27 carcass, 1-day adult  32 carcass, 4-day adult  26 carcass, 20-day adult    20 ovary, virgin 4-day female  (43) ovary, mated 4-day female  (52) testis, mated 4-day male    9 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    10 central nervous system, pupae P8    5 head, virgin 1-day female    30 head, virgin 4-day female    24 head, virgin 20-day female    14 head, mated 1-day female    27 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male    38 head, mated 4-day male    30 head, mated 20-day male    29 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    14 digestive system, 4-day adult    14 digestive system, 20-day adult    13 fat body, larvae L3 wandering    19 fat body, white prepupae    9 fat body, pupae P8    4 carcass, larvae L3 wandering    27 carcass, 1-day adult    32 carcass, 4-day adult    26 carcass, 20-day adult    20 ovary, virgin 4-day female    43 ovary, mated 4-day female    52 testis, mated 4-day male    9 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    10 central nervous system, pupae P8    5 head, virgin 1-day female    30 head, virgin 4-day female    24 head, virgin 20-day female    14 head, mated 1-day female    27 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male    38 head, mated 4-day male    30 head, mated 20-day male    29 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    14 digestive system, 4-day adult    14 digestive system, 20-day adult    13 fat body, larvae L3 wandering    19 fat body, white prepupae    9 fat body, pupae P8    4 carcass, larvae L3 wandering    27 carcass, 1-day adult    32 carcass, 4-day adult    26 carcass, 20-day adult    20 ovary, virgin 4-day female    43 ovary, mated 4-day female    52 testis, mated 4-day male    9 accessory gland, mated 4-day male    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 and 18-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. This gene is annotated by FlyBase as a dicistronic gene, meaning that some or all of its transcripts encode two or more polypeptide-coding open reading frames (ORFs) , with each ORF assigned to a different gene. The distribution of RNA-Seq coverage data amongst the different encoded genes cannot be determined. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    43 embryo 02-04hr    8 embryo 04-06hr    12 embryo 06-08hr    16 embryo 08-10hr    18 embryo 10-12hr    18 embryo 12-14hr    16 embryo 14-16hr    17 embryo 16-18hr    17 embryo 18-20hr    17 embryo 20-22hr    14 embryo 22-24hr    14 larva L1    21 larva L2    17 larva L3 12hr old    17 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    18 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    10 pupae 2d postWPP    11 pupae 3d postWPP    10 pupae 4d postWPP    33 adult male 01day    26 adult male 05day    23 adult male 30day    19 adult female 01day    39 adult female 05day    43 adult female 30day    42 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (43) embryo 02-04hr    8 embryo 04-06hr    12 embryo 06-08hr    16 embryo 08-10hr    18 embryo 10-12hr    18 embryo 12-14hr    16 embryo 14-16hr    17 embryo 16-18hr    17 embryo 18-20hr    17 embryo 20-22hr    14 embryo 22-24hr    14 larva L1    21 larva L2    17 larva L3 12hr old    17 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    18 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    10 pupae 2d postWPP    11 pupae 3d postWPP    10 pupae 4d postWPP  (33) adult male 01day  26 adult male 05day    23 adult male 30day    19 adult female 01day  (39) adult female 05day  (43) adult female 30day  (42) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    43 embryo 02-04hr    8 embryo 04-06hr    12 embryo 06-08hr    16 embryo 08-10hr    18 embryo 10-12hr    18 embryo 12-14hr    16 embryo 14-16hr    17 embryo 16-18hr    17 embryo 18-20hr    17 embryo 20-22hr    14 embryo 22-24hr    14 larva L1    21 larva L2    17 larva L3 12hr old    17 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    18 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    10 pupae 2d postWPP    11 pupae 3d postWPP    10 pupae 4d postWPP    33 adult male 01day    26 adult male 05day    23 adult male 30day    19 adult female 01day    39 adult female 05day    43 adult female 30day    42 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    43 embryo 02-04hr    8 embryo 04-06hr    12 embryo 06-08hr    16 embryo 08-10hr    18 embryo 10-12hr    18 embryo 12-14hr    16 embryo 14-16hr    17 embryo 16-18hr    17 embryo 18-20hr    17 embryo 20-22hr    14 embryo 22-24hr    14 larva L1    21 larva L2    17 larva L3 12hr old    17 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    18 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    10 pupae 2d postWPP    11 pupae 3d postWPP    10 pupae 4d postWPP    33 adult male 01day    26 adult male 05day    23 adult male 30day    19 adult female 01day    39 adult female 05day    43 adult female 30day    42 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    43 embryo 02-04hr    8 embryo 04-06hr    12 embryo 06-08hr    16 embryo 08-10hr    18 embryo 10-12hr    18 embryo 12-14hr    16 embryo 14-16hr    17 embryo 16-18hr    17 embryo 18-20hr    17 embryo 20-22hr    14 embryo 22-24hr    14 larva L1    21 larva L2    17 larva L3 12hr old    17 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    18 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    10 pupae 2d postWPP    11 pupae 3d postWPP    10 pupae 4d postWPP    33 adult male 01day    26 adult male 05day    23 adult male 30day    19 adult female 01day    39 adult female 05day    43 adult female 30day    42 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (43) embryo 02-04hr    8 embryo 04-06hr    12 embryo 06-08hr    16 embryo 08-10hr    18 embryo 10-12hr    18 embryo 12-14hr    16 embryo 14-16hr    17 embryo 16-18hr    17 embryo 18-20hr    17 embryo 20-22hr    14 embryo 22-24hr    14 larva L1    21 larva L2    17 larva L3 12hr old    17 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    18 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    10 pupae 2d postWPP    11 pupae 3d postWPP    10 pupae 4d postWPP  (33) adult male 01day  26 adult male 05day    23 adult male 30day    19 adult female 01day  (39) adult female 05day  (43) adult female 30day  (42) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    43 embryo 02-04hr    8 embryo 04-06hr    12 embryo 06-08hr    16 embryo 08-10hr    18 embryo 10-12hr    18 embryo 12-14hr    16 embryo 14-16hr    17 embryo 16-18hr    17 embryo 18-20hr    17 embryo 20-22hr    14 embryo 22-24hr    14 larva L1    21 larva L2    17 larva L3 12hr old    17 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    18 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    10 pupae 2d postWPP    11 pupae 3d postWPP    10 pupae 4d postWPP    33 adult male 01day    26 adult male 05day    23 adult male 30day    19 adult female 01day    39 adult female 05day    43 adult female 30day    42 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    43 embryo 02-04hr    8 embryo 04-06hr    12 embryo 06-08hr    16 embryo 08-10hr    18 embryo 10-12hr    18 embryo 12-14hr    16 embryo 14-16hr    17 embryo 16-18hr    17 embryo 18-20hr    17 embryo 20-22hr    14 embryo 22-24hr    14 larva L1    21 larva L2    17 larva L3 12hr old    17 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    18 white prepupae new    14 white prepupae 12hr    19 white prepupae 24hr    10 pupae 2d postWPP    11 pupae 3d postWPP    10 pupae 4d postWPP    33 adult male 01day    26 adult male 05day    23 adult male 30day    19 adult female 01day    39 adult female 05day    43 adult female 30day    42 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    7 embryonic 1182-4H    20 embryonic GM2    13 embryonic Kc167    30 embryonic S1    20 embryonic S3    11 leg disc CME L1    10 wing disc CME-W2    7 wing disc ML-DmD8    10 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    29 wing disc ML-DmD21    11 wing disc ML-DmD32    10 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11    27 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    11 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    16 ovary fGS/OSS    22 ovary OSC    22 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (28) Schneider line 2 Sg4    7 embryonic 1182-4H    20 embryonic GM2    13 embryonic Kc167  (30) embryonic S1    20 embryonic S3    11 leg disc CME L1    10 wing disc CME-W2    7 wing disc ML-DmD8    10 wing disc ML-DmD9    20 wing disc ML-DmD16-c3  (29) wing disc ML-DmD21    11 wing disc ML-DmD32    10 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11  (27) antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    11 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    16 ovary fGS/OSS    22 ovary OSC    22 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    7 embryonic 1182-4H    20 embryonic GM2    13 embryonic Kc167    30 embryonic S1    20 embryonic S3    11 leg disc CME L1    10 wing disc CME-W2    7 wing disc ML-DmD8    10 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    29 wing disc ML-DmD21    11 wing disc ML-DmD32    10 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11    27 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    11 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    16 ovary fGS/OSS    22 ovary OSC    22 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    7 embryonic 1182-4H    20 embryonic GM2    13 embryonic Kc167    30 embryonic S1    20 embryonic S3    11 leg disc CME L1    10 wing disc CME-W2    7 wing disc ML-DmD8    10 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    29 wing disc ML-DmD21    11 wing disc ML-DmD32    10 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11    27 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    11 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    16 ovary fGS/OSS    22 ovary OSC    22 ovary OSS    13 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    7 embryonic 1182-4H    20 embryonic GM2    13 embryonic Kc167    30 embryonic S1    20 embryonic S3    11 leg disc CME L1    10 wing disc CME-W2    7 wing disc ML-DmD8    10 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    29 wing disc ML-DmD21    11 wing disc ML-DmD32    10 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11    27 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    11 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    16 ovary fGS/OSS    22 ovary OSC    22 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  28 Schneider line 2 Sg4    7 embryonic 1182-4H    20 embryonic GM2    13 embryonic Kc167  30 embryonic S1    20 embryonic S3    11 leg disc CME L1    10 wing disc CME-W2    7 wing disc ML-DmD8    10 wing disc ML-DmD9    20 wing disc ML-DmD16-c3  29 wing disc ML-DmD21    11 wing disc ML-DmD32    10 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11  27 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    11 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    16 ovary fGS/OSS    22 ovary OSC    22 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    7 embryonic 1182-4H    20 embryonic GM2    13 embryonic Kc167    30 embryonic S1    20 embryonic S3    11 leg disc CME L1    10 wing disc CME-W2    7 wing disc ML-DmD8    10 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    29 wing disc ML-DmD21    11 wing disc ML-DmD32    10 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11    27 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    11 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    16 ovary fGS/OSS    22 ovary OSC    22 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    7 embryonic 1182-4H    20 embryonic GM2    13 embryonic Kc167    30 embryonic S1    20 embryonic S3    11 leg disc CME L1    10 wing disc CME-W2    7 wing disc ML-DmD8    10 wing disc ML-DmD9    20 wing disc ML-DmD16-c3    29 wing disc ML-DmD21    11 wing disc ML-DmD32    10 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11    27 antennal disc ML-DmD20-c5    13 mixed discs ML-DmD4-c1    11 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    9 tumorous blood cells mbn2    16 ovary fGS/OSS    22 ovary OSC    22 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    29 cold shock, 4-day adult    19 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    12 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    43 Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    39 Caffeine 25 mg/ml 48 hrs, 4-day adult    26 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (29) cold shock, 4-day adult    19 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    12 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult  (43) Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3  (37) Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (39) Caffeine 25 mg/ml 48 hrs, 4-day adult  26 Paraquat 5 mM 48 hrs, 4-day adult  (35) Paraquat 10 mM 48 hrs, 4-day adult  (34) Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    29 cold shock, 4-day adult    19 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    12 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    43 Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    39 Caffeine 25 mg/ml 48 hrs, 4-day adult    26 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    29 cold shock, 4-day adult    19 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    12 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    43 Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    39 Caffeine 25 mg/ml 48 hrs, 4-day adult    26 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    29 cold shock, 4-day adult    19 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    12 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    43 Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    39 Caffeine 25 mg/ml 48 hrs, 4-day adult    26 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  29 cold shock, 4-day adult    19 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    12 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult  (43) Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3  (37) Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (39) Caffeine 25 mg/ml 48 hrs, 4-day adult  26 Paraquat 5 mM 48 hrs, 4-day adult  (35) Paraquat 10 mM 48 hrs, 4-day adult  (34) Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    29 cold shock, 4-day adult    19 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    12 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    43 Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    39 Caffeine 25 mg/ml 48 hrs, 4-day adult    26 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    29 cold shock, 4-day adult    19 heat shock, 4-day adult    23 Cadmium 50 mM 6 hrs, larvae L3    12 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    43 Copper 0.5 mM 12 hrs, larvae L3    24 Copper 15 mM 48 hrs, 4-day adult    22 Zinc 5 mM 12 hrs, larvae L3    20 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    12 Ethanol 10% 3 hrs, larvae L3    15 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    39 Caffeine 25 mg/ml 48 hrs, 4-day adult    26 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    34 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_26
External Data & Images
Linkouts	BDGP expression data • RH69145 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0024251 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1685-RA;CG32527-RC
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable bbxEY09604 Sterility Allele fertile bbxEY09604 Phenotype manifest in Allele
Classical Alleles ( 9 )
For All Classical Alleles Show
Allele of bbx Class Mutagen Stocks Known lesion bbxBG02635 P-element activity 1 Yes bbxe00010 1 -- bbxe03338 1 -- bbxEY09604 P-element activity 1 Yes bbxEY16057 1 -- bbxf06082 1 -- bbxf07798 1 -- bbxEP1389 P-element activity 0 Yes bbxGG01135 0 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of bbx Class Mutagen Stocks Known lesion bbxJF02113 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes bbxtMa in vitro construct - genomic fragment 0 Yes
Aneuploid Aberrations
Disrupted in	Df(1)2/19B (Hayward et al., 1993)
Not disrupted in	Df(1)JC77 (Hayward et al., 1993)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{TRiP.JF02113} NA characterization construct P{slgA+GL2} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}wawEP1389 NA P{EPgy2}bbxEY16057 NA P{EPgy2}EY00330 NA P{EPgy2}wawEY09604 NA P{Mae-UAS.6.11}bbxGG01135 NA miscellaneous insertions P{GT1}wawBG02635 NA PBac{RB}bbxe00010 NA PBac{RB}bbxe03338 NA PBac{WH}bbxf06082 NA PBac{WH}bbxf07798 NA
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
DNA binding inferred from sequence or structural similarity with mouse Sox18 (FlyBase, 1992-) sequence-specific DNA binding transcription factor activity inferred from sequence or structural similarity with mouse Sox18 (FlyBase, 1992-)
Biological Process
CV term Evidence References
regulation of transcription, DNA-dependent inferred from sequence or structural similarity with mouse Sox18 (FlyBase, 1992-)
Cellular Component
CV term Evidence References
nucleus inferred by curator from GO:0003677|GO:0003700 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	gene_with_dicistronic_mRNA (FlyBase Genome Annotators, 2002-2003) nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
bbx - Br140 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) bbx - CG4730 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions bbx allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 534267 DroID - A comprehensive database of gene and protein interactions. • FBgn0024251 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 3772670
Orthologs
OrthoDB Orthologs (37) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG63R469 Dipteran inclusive ortholog search EOG6CNR14 Insect inclusive ortholog search EOG6000DP Arthropod inclusive ortholog search EOG65HQCS Metazoa inclusive ortholog search EOG628DV3
Orthologs in Drosophila Species (EOG63R469)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\bbx     Drosophila simulans   Dsim\GD17533 Y   Drosophila sechellia   Dsec\GM23082 Y   Drosophila erecta   Dere\GG19727 Y   Drosophila yakuba   Dyak\GE17925 Y   Drosophila ananassae   Dana\GF20922 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA16961 Y   Drosophila persimilis   Dper\GL20956     Drosophila persimilis   Dper\GL20955     Drosophila willistoni   Dwil\GK25081 Y   Drosophila virilis   Dvir\GJ16014 Y   Drosophila mojavensis   Dmoj\GI21541     Drosophila grimshawi   Dgri\GH24815 Y   Drosophila grimshawi   Dgri\GH23191
Orthologs in non-Drosophila Dipterans (EOG6CNR14)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL011161   Anopheles gambiae Malaria mosquito  Agam\AGAP003897   Anopheles gambiae Malaria mosquito  Agam\AGAP003896   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ005582
Orthologs in non-Dipteran Insects (EOG6000DP)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB48450   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG014481   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH10812   Atta cephalotes Leafcutter ant  Acep\ACEP13490   Camponotus floridanus Florida carpenter ant  Cflo\CFLO21936   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12856   Linepithema humile Argentine ant  Lhum\LH22467   Pogonomyrmex barbatus Red harvester ant  Pbar\PB20531   Solenopsis invicta Red fire ant  Sinv\SINV12425   Bombyx mori Silkmoth  Bmor\BGIBMGA008274   Pediculus humanus Human body louse  Phum\PHUM230960   Tribolium castaneum Red flour beetle  Tcas\GLEAN_07499
Orthologs in non-Insect Arthropods (EOG65HQCS)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Ixodes scapularis Deer tick  Isca\ISCW010061
Orthologs in non-Arthropod Metazoa (EOG628DV3)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Danio rerio Zebrafish  Drer\OTTDARG00000025048   Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000016131   Gallus gallus Domestic chicken  Ggal\BBX   Mus musculus House mouse  Mmus\Bbx   Rattus norvegicus Norway rat  Rnor\Bbx   Homo sapiens Human  Hsap\ENSG00000114439
Human Orthologs (1)
Gene OMIM HGNC Hsap\ENSG00000114439
AAA Orthologs (9) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD17533 Drosophila sechellia Dsec\GM23082 Drosophila erecta Dere\GG19727 Drosophila yakuba Dyak\GE17925 Drosophila ananassae Dana\GF20922 Drosophila pseudoobscura pseudoobscura Dpse\GA16961 Drosophila willistoni Dwil\GK25081 Drosophila virilis Dvir\GJ16014 Drosophila grimshawi Dgri\GH24815
Stocks & Reagents
Stocks Listed in FlyBase ( 8 )
Bloomington	26215 y1 v1; P{TRiP.JF02113}attP2 12722 w1118 P{GT1}wawBG02635 bbxBG02635 16940 y1 w67c23 P{EPgy2}wawEY09604 bbxEY09604 21184 y1 w67c23 P{EPgy2}bbxEY16057 wawEY16057
Harvard	- PBac{RB}bbxe00010 - PBac{RB}bbxe03338 - PBac{WH}bbxf06082 - PBac{WH}bbxf07798
Genomic Clones ( 2 )
	BACR09F10 BACR23I18 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 65 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM07552 LP12382 RH69145
Other clones	MIP33726
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT01102 AT09006 AT19052 AT29438 GH11982 RE33561 RE58601 RE73174 RH51380 RH53850 RH60136 RH62043 RH69410 SD05744 SD10940 SD13075 SD18916
Other clones	61178 104768 107078 118535 148333 162934 174767 184156 190114 194175 282384 283669 569672 AT01110 CK01.6C.G4 CK01.50C.H4 CK01.122A.D7 Dmel_neb_013347_0113_1249 Dmel_neb_013570_0081_1870 Dmel_neb_013711_0397_1129 Dmel_neb_013726_0434_0740 Dmel_neb_013895_0154_1765 Dmel_neb_013910_0438_2401 Dmel_neb_014134_0376_1620 Dmel_neb_014331_0423_2617 Dmel_neb_015062_0142_2499 EC00716 EK009544 EK040562 EK093216 EK174658 EK175056 EK186134 EK231309 EK237822 EK246205 EK254058 EK267325 EK276147 EK288830 EK292246 EK305109 EK307757 EP14308
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0024251 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 3772670
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: bbx CG1414 (Li, 1999.11)
Source for database merge of
Additional comments	Dicistronic annotation CG32527 split out into separate annotations for each open reading frame, CG1410 and CG1414, in release 4.2 of the genome annotation. CG1410 corresponds to waw and CG1414 corresponds to bbx. (FlyBase Genome Annotators, 2005) One or more of the processed transcripts for this gene contain(s) two non-overlapping open reading frames (ORFs). The non-overlapping ORFs are represented by waw and bbx. (FlyBase Genome Annotators, 2002-2003)
Other Comments
	Defined as a transcription unit discovered by Northern blots, neighbouring slgA gene. (Hayward et al., 1993)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_001031916 NM_001031917 NM_001272841 NM_001272842 RefSeq (Proteins) • NP_001027087 NP_001027088 NP_001259770 NP_001259771 DDBJ / EMBL / GenBank • AA696372 AAC28404 AAF50823 AAF50823.1 AAF50824.2 AAM11305 AAN09678 AAN09678.1 AAO39604 AF017777 AGB95608 AGB95609 AI297994 AQ254769 AW944674 AY094952 BH011546 BI627743 BT003552 BT003601 CL528175 Entrez Gene - A searchable database of RefSeq genes. • 12 3772670 UniProtKB/TrEMBL • O61348 Q86NW8
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • High mobility group (HMG) box domain (IPR009071) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RH69145
Linkouts
	BioGRID - A database of protein and genetic interactions • 534267 DroID - A comprehensive database of gene and protein interactions. • FBgn0024251 DRSC - Results from RNAi screens. • FBgn0024251 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0024251 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1685-RA;CG32527-RC FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0024251 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 3772670 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 3772670 modMine - Data generated by the modENCODE project. • FBgn0024251
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	anon-19Fb   bbx (Sessa and Bianchi, 2007, FlyBase Curators, 2008) CG1414 (Perkins et al., 2009.3.31) CG32527 (Giot et al., 2003, Burgler and Macdonald, 2005) tu2 (Hayward et al., 1993)
Name Synonym	bobby sox
Secondary FlyBase IDs
	FBgn0014083 FBgn0052527 FBpp0076899 FBpp0076900 FBpp0076901 FBtr0077200 FBtr0077201 FBtr0077202
References ( 21 )
Generate a list of	All references relating to this gene ( 21 )
List References by type	Research paper  ( 4 ) Supplementary material  ( 3 ) Personal communication to FlyBase  ( 5 ) FlyBase analysis  ( 5 ) DNA/RNA sequence record  ( 1 ) Curated genome annotation  ( 2 ) Website  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...