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Gene Dmel\Trn

General Information
Symbol	Dmel\Trn	Species	D. melanogaster
Name	Transportin	Annotation symbol	CG7398
Feature type	protein_coding_gene	FlyBase ID	FBgn0024921
Gene Model Status	Current	Stock availability	6 publicly available
Also Known As	dTRN
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	65A8-65A8	Sequence location	3L:6,186,580..6,193,485 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Transportin is referred to in FlyBase by the symbol Dmel\Trn (CG7398, FBgn0024921). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: protein transmembrane transporter activity. There is experimental evidence that it is involved in the biological process: neurogenesis; phagocytosis, engulfment. 6 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: Armadillo-like helical; Armadillo-type fold; HEAT; Importin-beta, N-terminal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval/adult hindgut, larval Malpighian tubules, larval salivary gland, adult ovary, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult midgut, adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, larval trachea, adult spermathecae, adult male reproductive system, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1624080_s_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of Trn. Gene sequence location is 3L:6186580..6193485.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 65A8-65A8   Limits computationally determined from genome sequence between P{PZ}l(3)0209402094 and P{lacW}l(3)L4060L4060
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Trn for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46 Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Trn-RA FBtr0077000  NM_058020   5496   893 Trn-RB FBtr0077001  NM_168160   4704   893 Trn-RC FBtr0077002  NM_168161   4666   893 Trn-RD FBtr0333059  NM_001274543   5414   893
Additional Transcript Data & Comments
Reported size (kB)	2.788 (longest cDNA) (Siomi et al., 1998)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Trn-PA   FBpp0076708   101.5   893   4.70     NP_477368   AAF50674 Trn-PB   FBpp0076709   101.5   893   4.70     NP_729154   AAN12089 Trn-PC   FBpp0076710   101.5   893   4.70     NP_729155   AAN12090 Trn-PD   FBpp0305273   101.5   893   4.70     NP_001261472   AGB94167
Additional Polypeptide Data & Comments
Reported size (kDa)	893 (aa) (Siomi et al., 1998)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Importin-beta, N-terminal (IPR001494) Armadillo-like helical (IPR011989) Armadillo-type fold (IPR016024) HEAT (IPR000357)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201572   AA202234   AA202375   AA246323   AA391031   AA391593   AA438535   AA439463   AA439994   AA440255   AA440406   AA539805   AA696647   AA802564   AA816515   AA817036   AA820108   AA951061   AA951886   AE014296 AAF50674   AE014296 AAN12089   AE014296 AAN12090   AC004357   AC004767   AF059613 AAC25708   AE014296 AGB94167   AI108515   AI109566   AI113715   AI134273   AI455294   AI456539   AI514767   AI516235   AI518838   AI519635   AI544254   AW942229   AW942513   AY094781 AAM11134   AY118523 AAM49892   BI169807   BI170463   BI214929   BI234056   BI235767   BI240876   BI242057   BI356411   BI356945   BI369722   BI370023   BI371473   BI372656   BI580250   BP540599   BP546580   BP557128   BT003191 AAO24946   CA805350   CK657239   CO178977   CO183867   CO194175   CO196238   CO196553   CO263102   CO265492   CO275670   CO279526   CO279677   CO283777   CO284591   CO284652   CO287224   CO288274   CO289489   CO289846   CO290577   CO290638   CO293934   CO304890   CO304892   CO309436   CO312941   CO317703   CO323657   CO324060   CO329128   CO330132   CO330493   EC056827   EC057457   EC060776   EC061092   EC068263   EC070142   EC070721   EC074969   EC076905   EC079730   EC080260   EC081603   EC083666   EC084556   EC088281   EC088599   EC088661   EC196308   EC196447   EC198270   EC200800   EC204158   EC205717   EC206217   EC207831   EC214565   EC221568   EC227286   EC230582   EC233009   EC240122   EC240123   EC241591   EC242097   EC242295   EC242647   EC245940   EC247812   EC250803   EC260009   EC267247   EV575270   EV575622   EV576430   EV579050   EV579425   EV594800   EV599669   GH941941   GH943003   GH943903   GH944416   GH944593   GH944794   GH945120   GH945324   GH945668   GH947987   GH948342   GH949765   GH950429   GH950965   GH952317   GH952540   GH953401   GH953471   GH953541   GH955934   GH956276   GH957081   GH957982   GH958438   GH958602   GH958677   GH959000   GH960305   GH963596   GH963855   GH964242   GH964661   GH965201   GH968119   GH968864   GH974614   GH975279   GH976422   GH976455   GH978399   GH978574   GH979025   GH979266   GH980418   GH980914   GH981125   GH982864   GH984133
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VRV8 Q86PD5 O76331 Q8MSW8 Q8SX88
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval/adult hindgut, larval Malpighian tubules, larval salivary gland, adult ovary, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult midgut, adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, larval trachea, adult spermathecae, adult male reproductive system, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    720.775 Larval Midgut    357.1 Larval Hindgut    515.9 Larval Malpighian Tubules    725.1 Larval Fat Body    302.3 Larval Salivary Gland    883.8 Larval Trachea    443.25 Larval Carcass    545.85 Adult Head    407.4 Adult Eye    293.75 Adult Brain    760.4 Adult Thoracic-Abdominal Ganglion    635.7 Adult Crop    540.6 Adult Midgut    386.9 Adult Hindgut    570.2 Adult Malpighian Tubules    412.2 Adult Fat Body    449.6 Adult Salivary Gland    279.5 Adult Heart    408.95 Adult VirginFemale Spermatheca    325.9 Adult InseminatedFemale Spermatheca    348.4 Adult Ovary    961.9 Adult Testis    106.5 Adult Male Accessory Gland    398.2 Adult Carcass    303.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (720.775) Larval Midgut    357.1 Larval Hindgut  515.9 Larval Malpighian Tubules  (725.1) Larval Fat Body    302.3 Larval Salivary Gland  (883.8) Larval Trachea    443.25 Larval Carcass  (545.85) Adult Head    407.4 Adult Eye    293.75 Adult Brain  (760.4) Adult Thoracic-Abdominal Ganglion  (635.7) Adult Crop  (540.6) Adult Midgut    386.9 Adult Hindgut  (570.2) Adult Malpighian Tubules    412.2 Adult Fat Body    449.6 Adult Salivary Gland    279.5 Adult Heart    408.95 Adult VirginFemale Spermatheca    325.9 Adult InseminatedFemale Spermatheca    348.4 Adult Ovary  (961.9) Adult Testis    106.5 Adult Male Accessory Gland    398.2 Adult Carcass    303.8 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    720.775 Larval Midgut    357.1 Larval Hindgut    515.9 Larval Malpighian Tubules    725.1 Larval Fat Body    302.3 Larval Salivary Gland    883.8 Larval Trachea    443.25 Larval Carcass    545.85 Adult Head    407.4 Adult Eye    293.75 Adult Brain    760.4 Adult Thoracic-Abdominal Ganglion    635.7 Adult Crop    540.6 Adult Midgut    386.9 Adult Hindgut    570.2 Adult Malpighian Tubules    412.2 Adult Fat Body    449.6 Adult Salivary Gland    279.5 Adult Heart    408.95 Adult VirginFemale Spermatheca    325.9 Adult InseminatedFemale Spermatheca    348.4 Adult Ovary    961.9 Adult Testis    106.5 Adult Male Accessory Gland    398.2 Adult Carcass    303.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    720.775 Larval Midgut    357.1 Larval Hindgut    515.9 Larval Malpighian Tubules    725.1 Larval Fat Body    302.3 Larval Salivary Gland    883.8 Larval Trachea    443.25 Larval Carcass    545.85 Adult Head    407.4 Adult Eye    293.75 Adult Brain    760.4 Adult Thoracic-Abdominal Ganglion    635.7 Adult Crop    540.6 Adult Midgut    386.9 Adult Hindgut    570.2 Adult Malpighian Tubules    412.2 Adult Fat Body    449.6 Adult Salivary Gland    279.5 Adult Heart    408.95 Adult VirginFemale Spermatheca    325.9 Adult InseminatedFemale Spermatheca    348.4 Adult Ovary    961.9 Adult Testis    106.5 Adult Male Accessory Gland    398.2 Adult Carcass    303.8 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    720.775 Larval Midgut    357.1 Larval Hindgut    515.9 Larval Malpighian Tubules    725.1 Larval Fat Body    302.3 Larval Salivary Gland    883.8 Larval Trachea    443.25 Larval Carcass    545.85 Adult Head    407.4 Adult Eye    293.75 Adult Brain    760.4 Adult Thoracic-Abdominal Ganglion    635.7 Adult Crop    540.6 Adult Midgut    386.9 Adult Hindgut    570.2 Adult Malpighian Tubules    412.2 Adult Fat Body    449.6 Adult Salivary Gland    279.5 Adult Heart    408.95 Adult VirginFemale Spermatheca    325.9 Adult InseminatedFemale Spermatheca    348.4 Adult Ovary    961.9 Adult Testis    106.5 Adult Male Accessory Gland    398.2 Adult Carcass    303.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  720.775 Larval Midgut    357.1 Larval Hindgut  515.9 Larval Malpighian Tubules  725.1 Larval Fat Body    302.3 Larval Salivary Gland  (883.8) Larval Trachea    443.25 Larval Carcass  545.85 Adult Head    407.4 Adult Eye    293.75 Adult Brain  760.4 Adult Thoracic-Abdominal Ganglion  635.7 Adult Crop  540.6 Adult Midgut    386.9 Adult Hindgut  570.2 Adult Malpighian Tubules    412.2 Adult Fat Body    449.6 Adult Salivary Gland    279.5 Adult Heart    408.95 Adult VirginFemale Spermatheca    325.9 Adult InseminatedFemale Spermatheca    348.4 Adult Ovary  (961.9) Adult Testis    106.5 Adult Male Accessory Gland    398.2 Adult Carcass    303.8 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    720.775 Larval Midgut    357.1 Larval Hindgut    515.9 Larval Malpighian Tubules    725.1 Larval Fat Body    302.3 Larval Salivary Gland    883.8 Larval Trachea    443.25 Larval Carcass    545.85 Adult Head    407.4 Adult Eye    293.75 Adult Brain    760.4 Adult Thoracic-Abdominal Ganglion    635.7 Adult Crop    540.6 Adult Midgut    386.9 Adult Hindgut    570.2 Adult Malpighian Tubules    412.2 Adult Fat Body    449.6 Adult Salivary Gland    279.5 Adult Heart    408.95 Adult VirginFemale Spermatheca    325.9 Adult InseminatedFemale Spermatheca    348.4 Adult Ovary    961.9 Adult Testis    106.5 Adult Male Accessory Gland    398.2 Adult Carcass    303.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    720.775 Larval Midgut    357.1 Larval Hindgut    515.9 Larval Malpighian Tubules    725.1 Larval Fat Body    302.3 Larval Salivary Gland    883.8 Larval Trachea    443.25 Larval Carcass    545.85 Adult Head    407.4 Adult Eye    293.75 Adult Brain    760.4 Adult Thoracic-Abdominal Ganglion    635.7 Adult Crop    540.6 Adult Midgut    386.9 Adult Hindgut    570.2 Adult Malpighian Tubules    412.2 Adult Fat Body    449.6 Adult Salivary Gland    279.5 Adult Heart    408.95 Adult VirginFemale Spermatheca    325.9 Adult InseminatedFemale Spermatheca    348.4 Adult Ovary    961.9 Adult Testis    106.5 Adult Male Accessory Gland    398.2 Adult Carcass    303.8 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    407.4   NA  Eye    293.75   NA  Brain    760.4   720.775  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    635.7   NA  Crop    540.6   357.1  Midgut    386.9   515.9  Hindgut    570.2   725.1  Malpighian Tubules    412.2   302.3  Fat Body    449.6   883.8  Salivary Gland    279.5   NA  Heart    408.95   443.25  Trachea    NA   NA  VirginFemale Spermatheca    325.9   NA  InseminatedFemale Spermatheca    348.4   NA  Ovary    961.9   NA  Testis    106.5   NA  Male Accessory Gland    398.2   545.85  Carcass    303.8 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3    37 central nervous system, pupae P8    25 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    12 head, mated 1-day female    12 head, mated 4-day female    12 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    20 head, mated 20-day male    22 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    23 digestive system, larvae L3 wandering    18 digestive system, 1-day adult    8 digestive system, 4-day adult    13 digestive system, 20-day adult    10 fat body, larvae L3 wandering    4 fat body, white prepupae    13 fat body, pupae P8    10 carcass, larvae L3 wandering    30 carcass, 1-day adult    12 carcass, 4-day adult    13 carcass, 20-day adult    11 ovary, virgin 4-day female    98 ovary, mated 4-day female    80 testis, mated 4-day male    6 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3  (37) central nervous system, pupae P8    25 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    12 head, mated 1-day female    12 head, mated 4-day female    12 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    20 head, mated 20-day male    22 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    23 digestive system, larvae L3 wandering    18 digestive system, 1-day adult    8 digestive system, 4-day adult    13 digestive system, 20-day adult    10 fat body, larvae L3 wandering    4 fat body, white prepupae    13 fat body, pupae P8    10 carcass, larvae L3 wandering  (30) carcass, 1-day adult    12 carcass, 4-day adult    13 carcass, 20-day adult    11 ovary, virgin 4-day female  (98) ovary, mated 4-day female  (80) testis, mated 4-day male    6 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3    37 central nervous system, pupae P8    25 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    12 head, mated 1-day female    12 head, mated 4-day female    12 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    20 head, mated 20-day male    22 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    23 digestive system, larvae L3 wandering    18 digestive system, 1-day adult    8 digestive system, 4-day adult    13 digestive system, 20-day adult    10 fat body, larvae L3 wandering    4 fat body, white prepupae    13 fat body, pupae P8    10 carcass, larvae L3 wandering    30 carcass, 1-day adult    12 carcass, 4-day adult    13 carcass, 20-day adult    11 ovary, virgin 4-day female    98 ovary, mated 4-day female    80 testis, mated 4-day male    6 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3    37 central nervous system, pupae P8    25 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    12 head, mated 1-day female    12 head, mated 4-day female    12 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    20 head, mated 20-day male    22 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    23 digestive system, larvae L3 wandering    18 digestive system, 1-day adult    8 digestive system, 4-day adult    13 digestive system, 20-day adult    10 fat body, larvae L3 wandering    4 fat body, white prepupae    13 fat body, pupae P8    10 carcass, larvae L3 wandering    30 carcass, 1-day adult    12 carcass, 4-day adult    13 carcass, 20-day adult    11 ovary, virgin 4-day female    98 ovary, mated 4-day female    80 testis, mated 4-day male    6 accessory gland, mated 4-day male    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3    37 central nervous system, pupae P8    25 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    12 head, mated 1-day female    12 head, mated 4-day female    12 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    20 head, mated 20-day male    22 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    23 digestive system, larvae L3 wandering    18 digestive system, 1-day adult    8 digestive system, 4-day adult    13 digestive system, 20-day adult    10 fat body, larvae L3 wandering    4 fat body, white prepupae    13 fat body, pupae P8    10 carcass, larvae L3 wandering    30 carcass, 1-day adult    12 carcass, 4-day adult    13 carcass, 20-day adult    11 ovary, virgin 4-day female    98 ovary, mated 4-day female    80 testis, mated 4-day male    6 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3  (37) central nervous system, pupae P8    25 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    12 head, mated 1-day female    12 head, mated 4-day female    12 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    20 head, mated 20-day male    22 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    23 digestive system, larvae L3 wandering    18 digestive system, 1-day adult    8 digestive system, 4-day adult    13 digestive system, 20-day adult    10 fat body, larvae L3 wandering    4 fat body, white prepupae    13 fat body, pupae P8    10 carcass, larvae L3 wandering  30 carcass, 1-day adult    12 carcass, 4-day adult    13 carcass, 20-day adult    11 ovary, virgin 4-day female  (98) ovary, mated 4-day female  (80) testis, mated 4-day male    6 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3    37 central nervous system, pupae P8    25 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    12 head, mated 1-day female    12 head, mated 4-day female    12 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    20 head, mated 20-day male    22 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    23 digestive system, larvae L3 wandering    18 digestive system, 1-day adult    8 digestive system, 4-day adult    13 digestive system, 20-day adult    10 fat body, larvae L3 wandering    4 fat body, white prepupae    13 fat body, pupae P8    10 carcass, larvae L3 wandering    30 carcass, 1-day adult    12 carcass, 4-day adult    13 carcass, 20-day adult    11 ovary, virgin 4-day female    98 ovary, mated 4-day female    80 testis, mated 4-day male    6 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    21 central nervous system, larvae L3    37 central nervous system, pupae P8    25 head, virgin 1-day female    17 head, virgin 4-day female    14 head, virgin 20-day female    12 head, mated 1-day female    12 head, mated 4-day female    12 head, mated 20-day female    12 head, mated 1-day male    19 head, mated 4-day male    20 head, mated 20-day male    22 salivary gland, larvae L3 wandering    10 salivary gland, white prepupae    23 digestive system, larvae L3 wandering    18 digestive system, 1-day adult    8 digestive system, 4-day adult    13 digestive system, 20-day adult    10 fat body, larvae L3 wandering    4 fat body, white prepupae    13 fat body, pupae P8    10 carcass, larvae L3 wandering    30 carcass, 1-day adult    12 carcass, 4-day adult    13 carcass, 20-day adult    11 ovary, virgin 4-day female    98 ovary, mated 4-day female    80 testis, mated 4-day male    6 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    70 embryo 02-04hr    79 embryo 04-06hr    30 embryo 06-08hr    27 embryo 08-10hr    39 embryo 10-12hr    24 embryo 12-14hr    29 embryo 14-16hr    24 embryo 16-18hr    25 embryo 18-20hr    14 embryo 20-22hr    17 embryo 22-24hr    24 larva L1    12 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    27 white prepupae new    31 white prepupae 12hr    27 white prepupae 24hr    21 pupae 2d postWPP    17 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    11 adult male 30day    9 adult female 01day    25 adult female 05day    49 adult female 30day    44 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (70) embryo 02-04hr  (79) embryo 04-06hr  (30) embryo 06-08hr  (27) embryo 08-10hr  (39) embryo 10-12hr    24 embryo 12-14hr  (29) embryo 14-16hr    24 embryo 16-18hr    25 embryo 18-20hr    14 embryo 20-22hr    17 embryo 22-24hr    24 larva L1    12 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9  (27) white prepupae new  (31) white prepupae 12hr  (27) white prepupae 24hr    21 pupae 2d postWPP    17 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    11 adult male 30day    9 adult female 01day    25 adult female 05day  (49) adult female 30day  (44) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    70 embryo 02-04hr    79 embryo 04-06hr    30 embryo 06-08hr    27 embryo 08-10hr    39 embryo 10-12hr    24 embryo 12-14hr    29 embryo 14-16hr    24 embryo 16-18hr    25 embryo 18-20hr    14 embryo 20-22hr    17 embryo 22-24hr    24 larva L1    12 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    27 white prepupae new    31 white prepupae 12hr    27 white prepupae 24hr    21 pupae 2d postWPP    17 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    11 adult male 30day    9 adult female 01day    25 adult female 05day    49 adult female 30day    44 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    70 embryo 02-04hr    79 embryo 04-06hr    30 embryo 06-08hr    27 embryo 08-10hr    39 embryo 10-12hr    24 embryo 12-14hr    29 embryo 14-16hr    24 embryo 16-18hr    25 embryo 18-20hr    14 embryo 20-22hr    17 embryo 22-24hr    24 larva L1    12 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    27 white prepupae new    31 white prepupae 12hr    27 white prepupae 24hr    21 pupae 2d postWPP    17 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    11 adult male 30day    9 adult female 01day    25 adult female 05day    49 adult female 30day    44 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    70 embryo 02-04hr    79 embryo 04-06hr    30 embryo 06-08hr    27 embryo 08-10hr    39 embryo 10-12hr    24 embryo 12-14hr    29 embryo 14-16hr    24 embryo 16-18hr    25 embryo 18-20hr    14 embryo 20-22hr    17 embryo 22-24hr    24 larva L1    12 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    27 white prepupae new    31 white prepupae 12hr    27 white prepupae 24hr    21 pupae 2d postWPP    17 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    11 adult male 30day    9 adult female 01day    25 adult female 05day    49 adult female 30day    44 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (70) embryo 02-04hr  (79) embryo 04-06hr  30 embryo 06-08hr  27 embryo 08-10hr  (39) embryo 10-12hr    24 embryo 12-14hr  29 embryo 14-16hr    24 embryo 16-18hr    25 embryo 18-20hr    14 embryo 20-22hr    17 embryo 22-24hr    24 larva L1    12 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9  27 white prepupae new  31 white prepupae 12hr  27 white prepupae 24hr    21 pupae 2d postWPP    17 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    11 adult male 30day    9 adult female 01day    25 adult female 05day  (49) adult female 30day  (44) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    70 embryo 02-04hr    79 embryo 04-06hr    30 embryo 06-08hr    27 embryo 08-10hr    39 embryo 10-12hr    24 embryo 12-14hr    29 embryo 14-16hr    24 embryo 16-18hr    25 embryo 18-20hr    14 embryo 20-22hr    17 embryo 22-24hr    24 larva L1    12 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    27 white prepupae new    31 white prepupae 12hr    27 white prepupae 24hr    21 pupae 2d postWPP    17 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    11 adult male 30day    9 adult female 01day    25 adult female 05day    49 adult female 30day    44 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    70 embryo 02-04hr    79 embryo 04-06hr    30 embryo 06-08hr    27 embryo 08-10hr    39 embryo 10-12hr    24 embryo 12-14hr    29 embryo 14-16hr    24 embryo 16-18hr    25 embryo 18-20hr    14 embryo 20-22hr    17 embryo 22-24hr    24 larva L1    12 larva L2    11 larva L3 12hr old    9 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    27 white prepupae new    31 white prepupae 12hr    27 white prepupae 24hr    21 pupae 2d postWPP    17 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    11 adult male 30day    9 adult female 01day    25 adult female 05day    49 adult female 30day    44 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    18 embryonic 1182-4H    27 embryonic GM2    37 embryonic Kc167    28 embryonic S1    27 embryonic S3    29 leg disc CME L1    18 wing disc CME-W2    31 wing disc ML-DmD8    21 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    4 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3    32 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    23 tumorous blood cells mbn2    31 ovary fGS/OSS    18 ovary OSC    23 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (28) Schneider line 2 Sg4    18 embryonic 1182-4H  (27) embryonic GM2  (37) embryonic Kc167  (28) embryonic S1  (27) embryonic S3  (29) leg disc CME L1    18 wing disc CME-W2  (31) wing disc ML-DmD8    21 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    4 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3  (32) eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    23 tumorous blood cells mbn2  (31) ovary fGS/OSS    18 ovary OSC    23 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    18 embryonic 1182-4H    27 embryonic GM2    37 embryonic Kc167    28 embryonic S1    27 embryonic S3    29 leg disc CME L1    18 wing disc CME-W2    31 wing disc ML-DmD8    21 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    4 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3    32 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    23 tumorous blood cells mbn2    31 ovary fGS/OSS    18 ovary OSC    23 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    18 embryonic 1182-4H    27 embryonic GM2    37 embryonic Kc167    28 embryonic S1    27 embryonic S3    29 leg disc CME L1    18 wing disc CME-W2    31 wing disc ML-DmD8    21 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    4 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3    32 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    23 tumorous blood cells mbn2    31 ovary fGS/OSS    18 ovary OSC    23 ovary OSS    15 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    18 embryonic 1182-4H    27 embryonic GM2    37 embryonic Kc167    28 embryonic S1    27 embryonic S3    29 leg disc CME L1    18 wing disc CME-W2    31 wing disc ML-DmD8    21 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    4 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3    32 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    23 tumorous blood cells mbn2    31 ovary fGS/OSS    18 ovary OSC    23 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  28 Schneider line 2 Sg4    18 embryonic 1182-4H  27 embryonic GM2  (37) embryonic Kc167  28 embryonic S1  27 embryonic S3  29 leg disc CME L1    18 wing disc CME-W2  31 wing disc ML-DmD8    21 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    4 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3  32 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    23 tumorous blood cells mbn2  31 ovary fGS/OSS    18 ovary OSC    23 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    18 embryonic 1182-4H    27 embryonic GM2    37 embryonic Kc167    28 embryonic S1    27 embryonic S3    29 leg disc CME L1    18 wing disc CME-W2    31 wing disc ML-DmD8    21 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    4 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3    32 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    23 tumorous blood cells mbn2    31 ovary fGS/OSS    18 ovary OSC    23 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    28 Schneider line 2 Sg4    18 embryonic 1182-4H    27 embryonic GM2    37 embryonic Kc167    28 embryonic S1    27 embryonic S3    29 leg disc CME L1    18 wing disc CME-W2    31 wing disc ML-DmD8    21 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    4 wing disc ML-DmD32    12 haltere disc ML-DmD17-c3    32 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    15 CNS ML-DmBG1-c1    18 CNS ML-DmBG2-c2    23 tumorous blood cells mbn2    31 ovary fGS/OSS    18 ovary OSC    23 ovary OSS    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult    27 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    60 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    45 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    20 Ethanol 2.5% 3 hrs, larvae L3    54 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    48 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    38 Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult  (27) Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult  26 Cadmium 100 mM 48 hrs, 4-day adult  (60) Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult  (45) Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    20 Ethanol 2.5% 3 hrs, larvae L3  (54) Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (48) Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult  (40) Paraquat 10 mM 48 hrs, 4-day adult  (38) Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult    27 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    60 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    45 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    20 Ethanol 2.5% 3 hrs, larvae L3    54 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    48 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    38 Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult    27 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    60 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    45 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    20 Ethanol 2.5% 3 hrs, larvae L3    54 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    48 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    38 Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult    27 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    60 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    45 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    20 Ethanol 2.5% 3 hrs, larvae L3    54 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    48 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    38 Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult  27 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult  26 Cadmium 100 mM 48 hrs, 4-day adult  (60) Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult  (45) Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    20 Ethanol 2.5% 3 hrs, larvae L3  (54) Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (48) Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult  (40) Paraquat 10 mM 48 hrs, 4-day adult  (38) Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult    27 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    60 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    45 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    20 Ethanol 2.5% 3 hrs, larvae L3    54 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    48 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    38 Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    14 heat shock, 4-day adult    27 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult    26 Cadmium 100 mM 48 hrs, 4-day adult    60 Copper 0.5 mM 12 hrs, larvae L3    6 Copper 15 mM 48 hrs, 4-day adult    45 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    20 Ethanol 2.5% 3 hrs, larvae L3    54 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    10 Caffeine 1.5 mg/ml 4 hrs, larvae L3    10 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    48 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    38 Rotenone 2 μg 12 hrs, larvae L3    10 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_01 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0024921 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7398-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal TrnGD33 TrnGD2529 lethal | pupal stage, with Scer\GAL4pnr-MD237 TrnGD33 partially lethal - majority die | pupal stage, with Scer\GAL4pnr-MD237 TrnGD33 viable, with Scer\GAL4pnr-MD237 TrnGD2529 Other Phenotypes Allele neuroanatomy defective | larval stage TrnGD33 visible, with Scer\GAL4pnr-MD237 TrnGD33 Phenotype manifest in Allele embryonic/larval brain | larval stage TrnGD2529 embryonic/larval neuroblast | larval stage TrnGD33 ganglion mother cell | larval stage TrnGD33 mesothoracic tergum, with Scer\GAL4pnr-MD237 TrnGD33
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of Trn Class Mutagen Stocks Known lesion TrnMI03279 1 --
Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Trn Class Mutagen Stocks Known lesion TrnGD33 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes TrnGD2529 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes TrnJF02697 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes TrnKK108990 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes TrnNIG.7398R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel8101 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD33} NA P{GD2529} NA P{KK108990} NA P{NIG.7398R} NA P{TRiP.JF02697} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}TrnMI03279 NA
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011) phagocytosis, engulfment inferred from mutant phenotype (Stroschein-Stevenson et al., 2006)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
protein transmembrane transporter activity inferred from sequence or structural similarity with Saccharomyces KAP104 (FlyBase, 1992-)
Biological Process
CV term Evidence References
protein import into nucleus inferred from sequence or structural similarity with Saccharomyces KAP104 (FlyBase, 1992-)
Cellular Component
CV term Evidence References
nuclear pore inferred from sequence or structural similarity with Saccharomyces KAP104 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
Trn - mthl3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Trn allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 64174 DroID - A comprehensive database of gene and protein interactions. • FBgn0024921 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38721
Orthologs
OrthoDB Orthologs (46) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6N050B Dipteran inclusive ortholog search EOG62Z4Z6 Insect inclusive ortholog search EOG69064V Arthropod inclusive ortholog search EOG663XST Metazoa inclusive ortholog search EOG6T1WD8
Orthologs in Drosophila Species (EOG6N050B)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Trn     Drosophila simulans   Dsim\GD13948     Drosophila sechellia   Dsec\GM14771     Drosophila erecta   Dere\GG15334 Y   Drosophila yakuba   Dyak\GE21552     Drosophila ananassae   Dana\GF23533     Drosophila pseudoobscura pseudoobscura   Dpse\GA20324     Drosophila persimilis   Dper\GL22567     Drosophila willistoni   Dwil\GK16930     Drosophila virilis   Dvir\GJ13363     Drosophila mojavensis   Dmoj\GI12093     Drosophila grimshawi   Dgri\GH15155
Orthologs in non-Drosophila Dipterans (EOG62Z4Z6)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL007521   Anopheles gambiae Malaria mosquito  Agam\AGAP005892   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ000096
Orthologs in non-Dipteran Insects (EOG69064V)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC408842 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006021 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH15678 Y Atta cephalotes Leafcutter ant  Acep\ACEP14906 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO12950 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL23002 Y Linepithema humile Argentine ant  Lhum\LH12460 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB12087 Y Solenopsis invicta Red fire ant  Sinv\SINV11799 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI010129 Y Bombyx mori Silkmoth  Bmor\BGIBMGA003635 Y Pediculus humanus Human body louse  Phum\PHUM308970 Y Tribolium castaneum Red flour beetle  Tcas\TC001725 Y
Orthologs in non-Insect Arthropods (EOG663XST)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\ND2 Y Daphnia pulex Water flea  Dpux\JGI_V11_307700 Y Ixodes scapularis Deer tick  Isca\ISCW010530 Y
Orthologs in non-Arthropod Metazoa (EOG6T1WD8)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\imb-2 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_020288gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_014995gn Y Danio rerio Zebrafish  Drer\tnpo2 Y Danio rerio Zebrafish  Drer\ENSDARG00000042887 Y Danio rerio Zebrafish  Drer\ENSDARG00000035390 Y Xenopus tropicalis Western clawed frog  Xtro\tnpo1 Y Xenopus tropicalis Western clawed frog  Xtro\tnpo2 Y Gallus gallus Domestic chicken  Ggal\TNPO1 Y Mus musculus House mouse  Mmus\Tnpo2 Y Mus musculus House mouse  Mmus\Tnpo1 Y Rattus norvegicus Norway rat  Rnor\Tnpo1 Y Rattus norvegicus Norway rat  Rnor\Tnpo2 Y Homo sapiens Human  Hsap\ENSG00000105576 Y Homo sapiens Human  Hsap\TNPO1 Y
Human Orthologs (2)
Gene OMIM HGNC Hsap\ENSG00000105576     Hsap\TNPO1
AAA Orthologs (1) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila erecta Dere\GG15334
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	27546 y1 v1; P{TRiP.JF02697}attP2 36227 y1 w*; Mi{MIC}TrnMI03279
VDRC	v105181 P{KK108990}VIE-260B v6543 w1118; P{GD33}v6543 v6544 w1118; P{GD33}v6544 v4769 w1118; P{GD2529}v4769/TM3
Genomic Clones ( 1 )
	BACR09G21 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 172 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD12333 LD19058 RE59670
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH07364 GH08792 GH10150 GH11685 GM05833 GM08062 LD01987 LD02415 LD02548 LD04644 LD05380 LD10036 LD10639 LD14040 LD14894 LD14994 LD15058 LD22032 LD31339 LD32758 LD35243 LD36588 LD39289 LD42033 LD46452 LP23372 RE11085 RE11916 RE21083 RE29687 RE31688 RE37825 RE39273 RE42553 RE43251 RE55991 RE56385 RE58371 RE74409 SD10745
Other clones	14996 17199 18753 21056 28292 31274 36919 55856 65571 70253 83437 109068 119187 121884 124121 124142 163890 173740 192535 214545.25 522072 CK01.14D.G6 CK01.23D.G12 CK01.27A.D3 CK01.64D.C6 CK01.85D.F10 CK01.86B.H1 CK01.88A.F11 CK01.88B.G1 CK01.90D.E4 CK01.95C.B4 CK01.95C.E4 CK01.96A.A2 CK01.104B.F2 CK01.113A.A8 CK01.114B.A6 CK01.115D.D5 CK01.117A.G12 CK01.117D.D5 Dmel_dig_002544_0712_1129 Dmel_dig_006321_0648_2340 Dmel_dig_014785_0711_2454 Dmel_dig_015117_0640_0790 Dmel_dig_018803_0644_1945 Dmel_neb_013086_0579_1123 Dmel_neb_014565_0878_1394 EC26561 EC37561 EK002325 EK005545 EK058107 EK065243 EK068129 EK071150 EK072222 EK074350 EK074633 EK087453 EK118226 EK135017 EK135626 EK142809 EK164424 EK166351 EK166502 EK191044 EK192435 EK205202 EK217643 EK230708 EK246656 EK246658 EK268829 EK292059 EK294602 EK295411 ESG0117d.B21_C12 FGA006B10 FGH107H08 FGM307E02 LD22713 RP004016241 RP004026764 RP004029090 RP004033706 RP004045958 RP004066037 RP004082030 RP004088014 RP004128422 RP004128966 RP004131255 RP004143433 RP004145943 RP004163332 RP004172893 RP004180122 RP004199985 RP004201345 RP004203254 RP004217264 RP004227676 RP004232155 RP004234424 RP004234841 RP004236233 RP004236397 RP004239894 RP004241044 RP004241612 RP004245664 RP004252042 RP004252138 RP004254348 RP004258985 RP004260326 RP004260834 RP004319272 RP004319681 RP004346587 RP004360209 RP004448905 RP004459498 RP004494568 RP004501038 RP004506307 RP004511302 RP004512454 RP004546624
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0024921 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38721
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Trn CG7398 (Gabrielian, 1999.11)
Source for database merge of
Additional comments
Other Comments
	S2 cells treated with dsRNA generated against this gene show reduced phagocytosis of Candida albicans compared to untreated cells. (Stroschein-Stevenson et al., 2006) Trn has been cloned and sequenced. (Siomi et al., 1998)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_058020 NM_168160 NM_168161 NM_001274543 RefSeq (Proteins) • NP_477368 NP_729154 NP_729155 NP_001261472 DDBJ / EMBL / GenBank • AA201572 AA202234 AA202375 AA246323 AA391031 AA391593 AA438535 AA439994 AA539805 AAC25708 AAF50674 AAM11134 AAM49892 AAN12089 AAN12090 AAO24946 AC004357 AC004767 AF059613 AGB94167 AW942229 AW942513 AY094781 AY118523 BI372656 BT003191 Entrez Gene - A searchable database of RefSeq genes. • 38721 UniProtKB/TrEMBL • O76331 Q8MSW8 Q8SX88 Q9VRV8 Q86PD5
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Importin-beta, N-terminal (IPR001494) Armadillo-like helical (IPR011989) Armadillo-type fold (IPR016024) HEAT (IPR000357)
Linkouts
	BioGRID - A database of protein and genetic interactions • 64174 DroID - A comprehensive database of gene and protein interactions. • FBgn0024921 DRSC - Results from RNAi screens. • FBgn0024921 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0024921 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7398-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0024921 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38721 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38721 modMine - Data generated by the modENCODE project. • FBgn0024921
Synonyms & Secondary IDs ( 9 )
Reported As
Symbol Synonym	CG7398 (Kang et al., 2002, Huang et al., 2007, Keleman et al., 2009.8.5, Perkins et al., 2009, Haussmann et al., 2008) dTRN (Allemand et al., 2002, Siomi et al., 1998) IMPβ2 (Hogarth et al., 2005) Tm (Anholt and Mackay, 2001) TRN (Siomi, 1998.4.15) Trn (Stroschein-Stevenson et al., 2006, Baeg et al., 2007, Hazelett et al., 2012, Doheny et al., 2008, Bandyopadhyay et al., 2006, Neumüller et al., 2011, Japanese National Institute of Genetics, 2012.5.21, Lindquist et al., 2011) Trn1 (Tekotte et al., 2002)
Name Synonym	transportin (Kang et al., 2002, Siomi, 1998.4.15) Transportin (Anholt and Mackay, 2001, Hogarth et al., 2005, Bandyopadhyay et al., 2006)
Secondary FlyBase IDs
References ( 38 )
Generate a list of	All references relating to this gene ( 38 )
List References by type	Research paper  ( 16 ) Supplementary material  ( 5 ) Review  ( 1 ) Erratum  ( 1 ) Personal communication to FlyBase  ( 8 ) Abstract  ( 1 ) FlyBase analysis  ( 2 ) DNA/RNA sequence record  ( 1 ) Stock list  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 3 )
	Hazelett et al., 2012, G3 (Bethesda) 2(7): 789--802 Comparison of Parallel High-Throughput RNA Sequencing Between Knockout of TDP-43 and Its Overexpression Reveals Primarily Nonreciprocal and Nonoverlapping Gene Expression Changes in the Central Nervous System of Drosophila. [FBrf0219102] Lindquist et al., 2011, Genome Res. 21(3): 433--446 Genome-scale RNAi on living-cell microarrays identifies novel regulators of Drosophila melanogaster TORC1-S6K pathway signaling. [FBrf0213199] Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593 Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi. [FBrf0213621] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...