A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\Fpps

General Information
SymbolDmel\FppsSpeciesD. melanogaster
NameFarnesyl pyrophosphate synthaseAnnotation symbolCG12389
Feature typeprotein_coding_geneFlyBase IDFBgn0025373
Gene Model StatusCurrent Stock availability 5 publicly available
Also Known Asl(2)k06103
Genomic Location
Chromosome (arm)2RRecombination map
Cytogenetic map47F1-47F1Sequence location2R:7,193,016..7,195,070 [-]

Genomic Maps

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modENCODE GBrowse
detailed view
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Automatically generated summary

See sections below for more information
The gene Farnesyl pyrophosphate synthase is referred to in FlyBase by the symbol Dmel\Fpps (CG12389, FBgn0025373). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: geranyltranstransferase activity. There is experimental evidence that it is involved in the biological process: wing disc development; germ cell migration. 7 alleles are reported. The phenotypes of these alleles are annotated with: pole cell; crystal cell. It has one annotated transcript and one annotated polypeptide. Protein features are: Polyprenyl synthetase; Terpenoid synthase. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval/adult central nervous system, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1628428_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Fpps. Gene sequence location is 2R:7193016..7195070.

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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01
Sequence features
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
47F1-47F1  
Limits computationally determined from genome sequence between P{PZ}rM547 and P{lacW}Fppsk06103&P{lacW}Fppsk03514  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
47F1-47F2  
(determined by in situ hybridisation)  
47F1-47F2  
(determined by in situ hybridisation)  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\Fpps for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0088118 FBtr0304676 FBtr0088170 FBtr0088119 FBpp0087219 FBpp0293218 FBpp0087266 FBpp0087220 FBti0114873 FBti0113068 FBti0105319 FBti0006758 FBti0048977 FBti0099799 FBti0006859 FBti0104082 FBti0043703
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0088170
  1502
  419
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0087266  
47.9  
419  
6.92  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Terpenoid synthase (IPR008949)
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view CG7741-RA CG7741-RB Fpps-RA CG7745-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0025373


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0025373
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0025373 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 3870
embryo 02-04hr
 
 7581
embryo 04-06hr
 
 11118
embryo 06-08hr
 
 7081
embryo 08-10hr
 
 6940
embryo 10-12hr
 
 6894
embryo 12-14hr
 
 6358
embryo 14-16hr
 
 2875
embryo 16-18hr
 
 1802
embryo 18-20hr
 
 1518
embryo 20-22hr
 
 2365
embryo 22-24hr
 
 2462
larva L1
 
 978
larva L2
 
 2355
larva L3 12hr old
 
 2556
larva L3 puffstage 1-2
 
 3130
larva L3 puffstage 3-6
 
 2902
larva L3 puffstage 7-9
 
 2905
white prepupae new
 
 2447
white prepupae 12hr
 
 2940
white prepupae 24hr
 
 3770
pupae 2d postWPP
 
 5777
pupae 3d postWPP
 
 1201
pupae 4d postWPP
 
 1052
adult male 01day
 
 2072
adult male 05day
 
 2306
adult male 30day
 
 1864
adult female 01day
 
 1712
adult female 05day
 
 2456
adult female 30day
 
 2506
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3870)
embryo 02-04hr
 (7581)
embryo 04-06hr
 (11118)
embryo 06-08hr
 (7081)
embryo 08-10hr
 (6940)
embryo 10-12hr
 (6894)
embryo 12-14hr
 (6358)
embryo 14-16hr
 (2875)
embryo 16-18hr
 (1802)
embryo 18-20hr
 (1518)
embryo 20-22hr
 (2365)
embryo 22-24hr
 (2462)
larva L1
 (978)
larva L2
 (2355)
larva L3 12hr old
 (2556)
larva L3 puffstage 1-2
 (3130)
larva L3 puffstage 3-6
 (2902)
larva L3 puffstage 7-9
 (2905)
white prepupae new
 (2447)
white prepupae 12hr
 (2940)
white prepupae 24hr
 (3770)
pupae 2d postWPP
 (5777)
pupae 3d postWPP
 (1201)
pupae 4d postWPP
 (1052)
adult male 01day
 (2072)
adult male 05day
 (2306)
adult male 30day
 (1864)
adult female 01day
 (1712)
adult female 05day
 (2456)
adult female 30day
 (2506)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3870)
embryo 02-04hr
 (7581)
embryo 04-06hr
 (11118)
embryo 06-08hr
 (7081)
embryo 08-10hr
 (6940)
embryo 10-12hr
 (6894)
embryo 12-14hr
 (6358)
embryo 14-16hr
 (2875)
embryo 16-18hr
 (1802)
embryo 18-20hr
 (1518)
embryo 20-22hr
 (2365)
embryo 22-24hr
 (2462)
larva L1
 
 978
larva L2
 (2355)
larva L3 12hr old
 (2556)
larva L3 puffstage 1-2
 (3130)
larva L3 puffstage 3-6
 (2902)
larva L3 puffstage 7-9
 (2905)
white prepupae new
 (2447)
white prepupae 12hr
 (2940)
white prepupae 24hr
 (3770)
pupae 2d postWPP
 (5777)
pupae 3d postWPP
 
 1201
pupae 4d postWPP
 
 1052
adult male 01day
 (2072)
adult male 05day
 (2306)
adult male 30day
 (1864)
adult female 01day
 (1712)
adult female 05day
 (2456)
adult female 30day
 (2506)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3870
embryo 02-04hr
 
 7581
embryo 04-06hr
 (11118)
embryo 06-08hr
 
 7081
embryo 08-10hr
 
 6940
embryo 10-12hr
 
 6894
embryo 12-14hr
 
 6358
embryo 14-16hr
 
 2875
embryo 16-18hr
 
 1802
embryo 18-20hr
 
 1518
embryo 20-22hr
 
 2365
embryo 22-24hr
 
 2462
larva L1
 
 978
larva L2
 
 2355
larva L3 12hr old
 
 2556
larva L3 puffstage 1-2
 
 3130
larva L3 puffstage 3-6
 
 2902
larva L3 puffstage 7-9
 
 2905
white prepupae new
 
 2447
white prepupae 12hr
 
 2940
white prepupae 24hr
 
 3770
pupae 2d postWPP
 
 5777
pupae 3d postWPP
 
 1201
pupae 4d postWPP
 
 1052
adult male 01day
 
 2072
adult male 05day
 
 2306
adult male 30day
 
 1864
adult female 01day
 
 1712
adult female 05day
 
 2456
adult female 30day
 
 2506
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3870
embryo 02-04hr
 
 7581
embryo 04-06hr
 
 11118
embryo 06-08hr
 
 7081
embryo 08-10hr
 
 6940
embryo 10-12hr
 
 6894
embryo 12-14hr
 
 6358
embryo 14-16hr
 
 2875
embryo 16-18hr
 
 1802
embryo 18-20hr
 
 1518
embryo 20-22hr
 
 2365
embryo 22-24hr
 
 2462
larva L1
 
 978
larva L2
 
 2355
larva L3 12hr old
 
 2556
larva L3 puffstage 1-2
 
 3130
larva L3 puffstage 3-6
 
 2902
larva L3 puffstage 7-9
 
 2905
white prepupae new
 
 2447
white prepupae 12hr
 
 2940
white prepupae 24hr
 
 3770
pupae 2d postWPP
 
 5777
pupae 3d postWPP
 
 1201
pupae 4d postWPP
 
 1052
adult male 01day
 
 2072
adult male 05day
 
 2306
adult male 30day
 
 1864
adult female 01day
 
 1712
adult female 05day
 
 2456
adult female 30day
 
 2506
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0025373 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 3870
embryo 02-04hr
 
 7581
embryo 04-06hr
 
 11118
embryo 06-08hr
 
 7081
embryo 08-10hr
 
 6940
embryo 10-12hr
 
 6894
embryo 12-14hr
 
 6358
embryo 14-16hr
 
 2875
embryo 16-18hr
 
 1802
embryo 18-20hr
 
 1518
embryo 20-22hr
 
 2365
embryo 22-24hr
 
 2462
larva L1
 
 978
larva L2
 
 2355
larva L3 12hr old
 
 2556
larva L3 puffstage 1-2
 
 3130
larva L3 puffstage 3-6
 
 2902
larva L3 puffstage 7-9
 
 2905
white prepupae new
 
 2447
white prepupae 12hr
 
 2940
white prepupae 24hr
 
 3770
pupae 2d postWPP
 
 5777
pupae 3d postWPP
 
 1201
pupae 4d postWPP
 
 1052
adult male 01day
 
 2072
adult male 05day
 
 2306
adult male 30day
 
 1864
adult female 01day
 
 1712
adult female 05day
 
 2456
adult female 30day
 
 2506
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3870)
embryo 02-04hr
 (7581)
embryo 04-06hr
 (11118)
embryo 06-08hr
 (7081)
embryo 08-10hr
 (6940)
embryo 10-12hr
 (6894)
embryo 12-14hr
 (6358)
embryo 14-16hr
 (2875)
embryo 16-18hr
 (1802)
embryo 18-20hr
 (1518)
embryo 20-22hr
 (2365)
embryo 22-24hr
 (2462)
larva L1
 (978)
larva L2
 (2355)
larva L3 12hr old
 (2556)
larva L3 puffstage 1-2
 (3130)
larva L3 puffstage 3-6
 (2902)
larva L3 puffstage 7-9
 (2905)
white prepupae new
 (2447)
white prepupae 12hr
 (2940)
white prepupae 24hr
 (3770)
pupae 2d postWPP
 (5777)
pupae 3d postWPP
 (1201)
pupae 4d postWPP
 (1052)
adult male 01day
 (2072)
adult male 05day
 (2306)
adult male 30day
 (1864)
adult female 01day
 (1712)
adult female 05day
 (2456)
adult female 30day
 (2506)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3870)
embryo 02-04hr
 (7581)
embryo 04-06hr
 (11118)
embryo 06-08hr
 (7081)
embryo 08-10hr
 (6940)
embryo 10-12hr
 (6894)
embryo 12-14hr
 (6358)
embryo 14-16hr
 (2875)
embryo 16-18hr
 1802
embryo 18-20hr
 1518
embryo 20-22hr
 2365
embryo 22-24hr
 2462
larva L1
 
 978
larva L2
 2355
larva L3 12hr old
 (2556)
larva L3 puffstage 1-2
 (3130)
larva L3 puffstage 3-6
 (2902)
larva L3 puffstage 7-9
 (2905)
white prepupae new
 2447
white prepupae 12hr
 (2940)
white prepupae 24hr
 (3770)
pupae 2d postWPP
 (5777)
pupae 3d postWPP
 
 1201
pupae 4d postWPP
 
 1052
adult male 01day
 2072
adult male 05day
 2306
adult male 30day
 1864
adult female 01day
 1712
adult female 05day
 2456
adult female 30day
 (2506)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3870
embryo 02-04hr
 
 7581
embryo 04-06hr
 11118
embryo 06-08hr
 
 7081
embryo 08-10hr
 
 6940
embryo 10-12hr
 
 6894
embryo 12-14hr
 
 6358
embryo 14-16hr
 
 2875
embryo 16-18hr
 
 1802
embryo 18-20hr
 
 1518
embryo 20-22hr
 
 2365
embryo 22-24hr
 
 2462
larva L1
 
 978
larva L2
 
 2355
larva L3 12hr old
 
 2556
larva L3 puffstage 1-2
 
 3130
larva L3 puffstage 3-6
 
 2902
larva L3 puffstage 7-9
 
 2905
white prepupae new
 
 2447
white prepupae 12hr
 
 2940
white prepupae 24hr
 
 3770
pupae 2d postWPP
 
 5777
pupae 3d postWPP
 
 1201
pupae 4d postWPP
 
 1052
adult male 01day
 
 2072
adult male 05day
 
 2306
adult male 30day
 
 1864
adult female 01day
 
 1712
adult female 05day
 
 2456
adult female 30day
 
 2506
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3870
embryo 02-04hr
 
 7581
embryo 04-06hr
 
 11118
embryo 06-08hr
 
 7081
embryo 08-10hr
 
 6940
embryo 10-12hr
 
 6894
embryo 12-14hr
 
 6358
embryo 14-16hr
 
 2875
embryo 16-18hr
 
 1802
embryo 18-20hr
 
 1518
embryo 20-22hr
 
 2365
embryo 22-24hr
 
 2462
larva L1
 
 978
larva L2
 
 2355
larva L3 12hr old
 
 2556
larva L3 puffstage 1-2
 
 3130
larva L3 puffstage 3-6
 
 2902
larva L3 puffstage 7-9
 
 2905
white prepupae new
 
 2447
white prepupae 12hr
 
 2940
white prepupae 24hr
 
 3770
pupae 2d postWPP
 
 5777
pupae 3d postWPP
 
 1201
pupae 4d postWPP
 
 1052
adult male 01day
 
 2072
adult male 05day
 
 2306
adult male 30day
 
 1864
adult female 01day
 
 1712
adult female 05day
 
 2456
adult female 30day
 
 2506
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0025373


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0025373
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval/adult central nervous system, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0025373 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 374.225
Larval Midgut
 
 897.6
Larval Hindgut
 
 1089
Larval Malpighian Tubules
 
 1584.9
Larval Fat Body
 
 388.9
Larval Salivary Gland
 
 311.9
Larval Trachea
 
 368.475
Larval Carcass
 
 396.95
Adult Head
 
 115.3
Adult Eye
 
 75.075
Adult Brain
 
 125.3
Adult Thoracic-Abdominal Ganglion
 
 113.4
Adult Crop
 
 1020.2
Adult Midgut
 
 682.2
Adult Hindgut
 
 752.4
Adult Malpighian Tubules
 
 777.5
Adult Fat Body
 
 154.6
Adult Salivary Gland
 
 124.5
Adult Heart
 
 222.725
Adult VirginFemale Spermatheca
 
 117.4
Adult InseminatedFemale Spermatheca
 
 82.5
Adult Ovary
 
 379.6
Adult Testis
 
 394.7
Adult Male Accessory Gland
 
 253.7
Adult Carcass
 
 115.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 374.225
Larval Midgut
 (897.6)
Larval Hindgut
 (1089)
Larval Malpighian Tubules
 (1584.9)
Larval Fat Body
 
 388.9
Larval Salivary Gland
 
 311.9
Larval Trachea
 
 368.475
Larval Carcass
 
 396.95
Adult Head
 
 115.3
Adult Eye
 
 75.075
Adult Brain
 
 125.3
Adult Thoracic-Abdominal Ganglion
 
 113.4
Adult Crop
 (1020.2)
Adult Midgut
 (682.2)
Adult Hindgut
 (752.4)
Adult Malpighian Tubules
 (777.5)
Adult Fat Body
 
 154.6
Adult Salivary Gland
 
 124.5
Adult Heart
 
 222.725
Adult VirginFemale Spermatheca
 
 117.4
Adult InseminatedFemale Spermatheca
 
 82.5
Adult Ovary
 
 379.6
Adult Testis
 
 394.7
Adult Male Accessory Gland
 
 253.7
Adult Carcass
 
 115.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 374.225
Larval Midgut
 
 897.6
Larval Hindgut
 (1089)
Larval Malpighian Tubules
 (1584.9)
Larval Fat Body
 
 388.9
Larval Salivary Gland
 
 311.9
Larval Trachea
 
 368.475
Larval Carcass
 
 396.95
Adult Head
 
 115.3
Adult Eye
 
 75.075
Adult Brain
 
 125.3
Adult Thoracic-Abdominal Ganglion
 
 113.4
Adult Crop
 1020.2
Adult Midgut
 
 682.2
Adult Hindgut
 
 752.4
Adult Malpighian Tubules
 
 777.5
Adult Fat Body
 
 154.6
Adult Salivary Gland
 
 124.5
Adult Heart
 
 222.725
Adult VirginFemale Spermatheca
 
 117.4
Adult InseminatedFemale Spermatheca
 
 82.5
Adult Ovary
 
 379.6
Adult Testis
 
 394.7
Adult Male Accessory Gland
 
 253.7
Adult Carcass
 
 115.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 374.225
Larval Midgut
 
 897.6
Larval Hindgut
 
 1089
Larval Malpighian Tubules
 
 1584.9
Larval Fat Body
 
 388.9
Larval Salivary Gland
 
 311.9
Larval Trachea
 
 368.475
Larval Carcass
 
 396.95
Adult Head
 
 115.3
Adult Eye
 
 75.075
Adult Brain
 
 125.3
Adult Thoracic-Abdominal Ganglion
 
 113.4
Adult Crop
 
 1020.2
Adult Midgut
 
 682.2
Adult Hindgut
 
 752.4
Adult Malpighian Tubules
 
 777.5
Adult Fat Body
 
 154.6
Adult Salivary Gland
 
 124.5
Adult Heart
 
 222.725
Adult VirginFemale Spermatheca
 
 117.4
Adult InseminatedFemale Spermatheca
 
 82.5
Adult Ovary
 
 379.6
Adult Testis
 
 394.7
Adult Male Accessory Gland
 
 253.7
Adult Carcass
 
 115.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0025373 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 374.225
Larval Midgut
 
 897.6
Larval Hindgut
 
 1089
Larval Malpighian Tubules
 
 1584.9
Larval Fat Body
 
 388.9
Larval Salivary Gland
 
 311.9
Larval Trachea
 
 368.475
Larval Carcass
 
 396.95
Adult Head
 
 115.3
Adult Eye
 
 75.075
Adult Brain
 
 125.3
Adult Thoracic-Abdominal Ganglion
 
 113.4
Adult Crop
 
 1020.2
Adult Midgut
 
 682.2
Adult Hindgut
 
 752.4
Adult Malpighian Tubules
 
 777.5
Adult Fat Body
 
 154.6
Adult Salivary Gland
 
 124.5
Adult Heart
 
 222.725
Adult VirginFemale Spermatheca
 
 117.4
Adult InseminatedFemale Spermatheca
 
 82.5
Adult Ovary
 
 379.6
Adult Testis
 
 394.7
Adult Male Accessory Gland
 
 253.7
Adult Carcass
 
 115.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 374.225
Larval Midgut
 (897.6)
Larval Hindgut
 (1089)
Larval Malpighian Tubules
 (1584.9)
Larval Fat Body
 
 388.9
Larval Salivary Gland
 
 311.9
Larval Trachea
 
 368.475
Larval Carcass
 
 396.95
Adult Head
 
 115.3
Adult Eye
 
 75.075
Adult Brain
 
 125.3
Adult Thoracic-Abdominal Ganglion
 
 113.4
Adult Crop
 (1020.2)
Adult Midgut
 682.2
Adult Hindgut
 752.4
Adult Malpighian Tubules
 777.5
Adult Fat Body
 
 154.6
Adult Salivary Gland
 
 124.5
Adult Heart
 
 222.725
Adult VirginFemale Spermatheca
 
 117.4
Adult InseminatedFemale Spermatheca
 
 82.5
Adult Ovary
 
 379.6
Adult Testis
 
 394.7
Adult Male Accessory Gland
 
 253.7
Adult Carcass
 
 115.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 374.225
Larval Midgut
 
 897.6
Larval Hindgut
 1089
Larval Malpighian Tubules
 1584.9
Larval Fat Body
 
 388.9
Larval Salivary Gland
 
 311.9
Larval Trachea
 
 368.475
Larval Carcass
 
 396.95
Adult Head
 
 115.3
Adult Eye
 
 75.075
Adult Brain
 
 125.3
Adult Thoracic-Abdominal Ganglion
 
 113.4
Adult Crop
 1020.2
Adult Midgut
 
 682.2
Adult Hindgut
 
 752.4
Adult Malpighian Tubules
 
 777.5
Adult Fat Body
 
 154.6
Adult Salivary Gland
 
 124.5
Adult Heart
 
 222.725
Adult VirginFemale Spermatheca
 
 117.4
Adult InseminatedFemale Spermatheca
 
 82.5
Adult Ovary
 
 379.6
Adult Testis
 
 394.7
Adult Male Accessory Gland
 
 253.7
Adult Carcass
 
 115.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 374.225
Larval Midgut
 
 897.6
Larval Hindgut
 
 1089
Larval Malpighian Tubules
 
 1584.9
Larval Fat Body
 
 388.9
Larval Salivary Gland
 
 311.9
Larval Trachea
 
 368.475
Larval Carcass
 
 396.95
Adult Head
 
 115.3
Adult Eye
 
 75.075
Adult Brain
 
 125.3
Adult Thoracic-Abdominal Ganglion
 
 113.4
Adult Crop
 
 1020.2
Adult Midgut
 
 682.2
Adult Hindgut
 
 752.4
Adult Malpighian Tubules
 
 777.5
Adult Fat Body
 
 154.6
Adult Salivary Gland
 
 124.5
Adult Heart
 
 222.725
Adult VirginFemale Spermatheca
 
 117.4
Adult InseminatedFemale Spermatheca
 
 82.5
Adult Ovary
 
 379.6
Adult Testis
 
 394.7
Adult Male Accessory Gland
 
 253.7
Adult Carcass
 
 115.7
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 115.3
 
NA 
Eye
 
 75.075
 
NA 
Brain
 
 125.3
 
374.225 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 113.4
 
NA 
Crop
 
 1020.2
 
897.6 
Midgut
 
 682.2
 
1089 
Hindgut
 
 752.4
 
1584.9 
Malpighian Tubules
 
 777.5
 
388.9 
Fat Body
 
 154.6
 
311.9 
Salivary Gland
 
 124.5
 
NA 
Heart
 
 222.725
 
368.475 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 117.4
 
NA 
InseminatedFemale Spermatheca
 
 82.5
 
NA 
Ovary
 
 379.6
 
NA 
Testis
 
 394.7
 
NA 
Male Accessory Gland
 
 253.7
 
396.95 
Carcass
 
 115.7

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
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Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
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Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
pole cell & embryonic nervous system, with Scer\GAL4elav-C155
hide Classical Alleles ( 4 )
For All Classical Alleles Show

Allele of FppsClassMutagenStocksKnown lesion
Fppsk061032 --
Fppse04660
1 --
Fppsk035141 --
FppsCB049370 Yes
hide Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show

Allele of FppsClassMutagenStocksKnown lesion
FppsKK1079111 Yes
FppsGD49470 Yes
FppsScer\UAS.cSa0 Yes
hide Aneuploid Aberrations
Disrupted in
Not disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap
miscellaneous insertions
hide Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
hide Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
inferred from genetic interaction with Bx
Cellular Component ( 0 terms)
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CV term
References
inferred from sequence or structural similarity
non-traceable author statement
Biological Process
CV term
References
Cellular Component ( 0 terms)
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hide Summary of Physical Interactions
Protein-protein
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Interacts with
Please look at the allele data for full details of the genetic interactions
Fpps allele
Gene
References
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Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
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hide Stocks Listed in FlyBase ( 5 )
Bloomington
Harvard
Kyoto
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 92 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Source for merge of: Fpps l(2)k06103
Source for merge of: Fpps v(2)k03514
Additional comments
hide Other Comments
Area matching Drosophila ESTs AA802928 and AA817115. Probable intron in gene represented by EST AA802928.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Terpenoid synthase (IPR008949)
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 10 )
Reported As
Symbol Synonym
fps
 
Name Synonym
Farnesyl diphosphate synthase
Farnesyl pyrophosphate synthase
 
Secondary FlyBase IDs
  • FBgn0022145
  • FBgn0042628
hide References ( 31 )
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hide Recent research papers ( 1 )
Bronstein et al., 2010, PLoS Genet. 6(8): e1001063
Transcriptional regulation by CHIP/LDB complexes. [FBrf0211594]
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All reviews listed in FlyBase were published before 2010