FB2020_02, released Apr 14, 2020

Gene: Dmel\Fpps

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General Information
Symbol
Dmel\Fpps
Species
D. melanogaster
Name
Farnesyl pyrophosphate synthase
Annotation Symbol
CG12389
Feature Type
protein_coding_gene
FlyBase ID
FBgn0025373
Gene Model Status
Current
Stock Availability
8 publicly available
Enzyme Name (EC)
Dimethylallyltranstransferase (2.5.1.1)
(2E,6E)-farnesyl diphosphate synthase (2.5.1.10)
Gene Snapshot
Farnesyl pyrophosphate synthase (Fpps) encodes a protein involved in germ cell migration. [Date last reviewed: 2019-09-12]
Other Summaries
Also Known As

l(2)k06103, v(2)k03514, Farnesyl diphosphate synthase, FPS

Key Links
Genomic Location
Cytogenetic map
47F1-47F1
Sequence location
2R:11,305,511..11,307,528 [-]
Recombination map

2-64

RefSeq locus
NT_033778 REGION:11305511..11307528
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
Molecular Function (GO)
[Detailed GO annotations]
Experimental Evidence
-
Predictions / Assertions
dimethylallyltranstransferase activity; geranyltranstransferase activity
Catalytic Activity (EC)
Experimental Evidence
-
Predictions / Assertions
Dimethylallyl diphosphate + isopentenyl diphosphate = diphosphate + geranyl diphosphate (2.5.1.1)
Geranyl diphosphate + isopentenyl diphosphate = diphosphate + (2E,6E)- farnesyl diphosphate (2.5.1.10)
Summaries
Gene Group (FlyBase)
PRENYLTRANSFERASES -
Prenyltransferases catalyze the transfer of a prenyl group from one compound to another. They can be divided into 3 main classes: (i) isoprenyl pyrophosphate synthases, which catalyze chain elongation to generate linear isoprenyl pyrophosphates; (b) protein prenyltransferases, which catalyze the transfer of an isoprenyl pyrophosphate (e.g. farnesyl pyrophosphate) to a protein or a peptide; (c) terpenoid cyclases, which catalyze the cyclization of isoprenyl pyrophosphates. (Adapted from PMID:12135472).
Gene Model and Products
Number of Transcripts
1
Number of Unique Polypeptides
1

Please see the GBrowse view of Dmel\Fpps or the JBrowse view of Dmel\Fpps for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model

Gene model reviewed during 5.49

Sequence Ontology: Class of Gene
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
Fpps-RA
FBtr0088170
NM_058032
1465
419
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
Fpps-PA
FBpp0087266
47.9
419
6.92
NP_477380
AAF58670
Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Fpps using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Gene Ontology (6 terms)
Molecular Function (2 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (2 terms)
CV Term
Evidence
References
dimethylallyltranstransferase activity
inferred from biological aspect of ancestor with PANTHER:PTN000162949
(assigned by GO_Central )
(Gaudet et al., 2011)
geranyltranstransferase activity
inferred from biological aspect of ancestor with PANTHER:PTN000162949
(assigned by GO_Central )
(Gaudet et al., 2011)
Biological Process (3 terms)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
germ cell migration
inferred from mutant phenotype
(Santos and Lehmann, 2004)
Terms Based on Predictions or Assertions (2 terms)
CV Term
Evidence
References
farnesyl diphosphate biosynthetic process
inferred from biological aspect of ancestor with PANTHER:PTN000162949
(assigned by GO_Central )
(Gaudet et al., 2011)
geranyl diphosphate biosynthetic process
inferred from electronic annotation with InterPro:IPR039702
(assigned by InterPro )
(FlyBase Curators et al., 2004-)
Cellular Component (1 term)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
cytoplasm
inferred from biological aspect of ancestor with PANTHER:PTN000162949
(assigned by GO_Central )
(Gaudet et al., 2011)
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage 1 -- 3
organism

Comment: maternally deposited

(Fisher et al., 2012)
embryonic stage 4 -- 6
organism | ubiquitous
(Fisher et al., 2012)
embryonic stage 7 -- 8
organism | ubiquitous
(Fisher et al., 2012)
embryonic stage 9 -- 10
organism | ubiquitous
(Fisher et al., 2012)
embryonic stage 11 -- 12
organism | ubiquitous
(Fisher et al., 2012)
embryonic stage 13 -- 16
organism | ubiquitous
(Fisher et al., 2012)
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
adult stage
adult head
• membrane
(Aradska et al., 2015)
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\Fpps in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyBase Wiki
Image Based Resources
Alleles, Insertions, and Transgenic Constructs
Classical and Insertion Alleles ( 5 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of Fpps
Transgenic constructs containing regulatory region of Fpps
Deletions and Duplications ( 7 )
Phenotypes
For more details about a specific phenotype click on the relevant allele symbol.
Lethality
Allele
lethal
lethal | recessive
viable
viable, with Scer\GAL4Mef2.PR
Other Phenotypes
Allele
visible | recessive
Phenotype manifest in
Allele
crystal cell
pole cell
pole cell & embryonic nervous system, with Scer\GAL4elav-C155
pole cell | embryonic stage 5, with Scer\GAL4Act.PU
pole cell | germline clone | rescuable maternal effect
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v7.1)
Homo sapiens (Human) (5)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\FDPS
15 of 15
Yes
Yes
Hsap\GGPS1
1 of 15
No
No
Hsap\PDSS1
1 of 15
No
No
Hsap\PDSS2
1 of 15
No
No
Hsap\RUSC1-AS1
1 of 15
No
Yes
Model Organism Orthologs (via DIOPT v7.1)
Mus musculus (laboratory mouse) (4)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Fdps
14 of 15
Yes
Yes
Mmus\Ggps1
1 of 15
No
No
Mmus\Pdss1
1 of 15
No
No
Mmus\Pdss2
1 of 15
No
No
Rattus norvegicus (Norway rat) (4)
Rnor\Fdps
10 of 13
Yes
Yes
Rnor\Ggps1
1 of 13
No
No
Rnor\Pdss1
1 of 13
No
No
Rnor\Pdss2
1 of 13
No
No
Xenopus tropicalis (Western clawed frog) (4)
Xtro\fdps
3 of 12
Yes
Yes
Xtro\ggps1
1 of 12
No
No
Xtro\pdss1
1 of 12
No
No
Xtro\pdss2
1 of 12
No
No
Danio rerio (Zebrafish) (3)
Drer\fdps
10 of 15
Yes
Yes
Drer\pdss1
1 of 15
No
No
Drer\pdss2
1 of 15
No
No
Caenorhabditis elegans (Nematode, roundworm) (2)
Cele\fdps-1
13 of 15
Yes
Yes
Cele\coq-1
1 of 15
No
No
Arabidopsis thaliana (thale-cress) (2)
Atha\FPS1
9 of 9
Yes
Yes
Atha\FPS2
9 of 9
Yes
Yes
Saccharomyces cerevisiae (Brewer's yeast) (3)
Scer\ERG20
14 of 15
Yes
Yes
Scer\BTS1
1 of 15
No
No
Scer\COQ1
1 of 15
No
No
Schizosaccharomyces pombe (Fission yeast) (2)
Spom\fps1
11 of 12
Yes
Yes
Spom\spo9
6 of 12
No
Yes
Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG0919083I )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00002678
Drosophila simulans
Dsim\GD25915
Drosophila sechellia
Dsec\GM20447
Drosophila erecta
Dere\GG22668
Drosophila yakuba
Dyak\GE13024
Drosophila ananassae
Dana\GF12410
Drosophila pseudoobscura pseudoobscura
Dpse\GA11601
Drosophila persimilis
Dper\GL17346
Drosophila willistoni
Dwil\GK22106
Drosophila virilis
Dvir\GJ15042
Drosophila mojavensis
Dmoj\GI19872
Drosophila grimshawi
Dgri\GH19915
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG0915046P )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17023713
Musca domestica
House fly
Mdoa\17018990
Musca domestica
House fly
Mdoa\17022126
Musca domestica
House fly
Mdoa\17018987
Musca domestica
House fly
Mdoa\17005912
Glossina morsitans
Tsetse fly
Gmor\GMOY006172
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_12218
Mayetiola destructor
Hessian fly
Mdes\Mdes014330
Mayetiola destructor
Hessian fly
Mdes\Mdes003149
Mayetiola destructor
Hessian fly
Mdes\Mdes004402
Mayetiola destructor
Hessian fly
Mdes\Mdes012770
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL003497
Anopheles darlingi
American malaria mosquito
Adar\ADAC007982
Anopheles gambiae
Malaria mosquito
Agam\AGAP007104
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ000077
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ000079
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W09XW )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA001926
Bombyx mori
Silkmoth
Bmor\BGIBMGA001927
Danaus plexippus
Monarch butterfly
Dple\DPOGS207504-PA
Danaus plexippus
Monarch butterfly
Dple\DPOGS207505-PA
Heliconius melpomene
Postman butterfly
Hmel\HMEL017961
Apis florea
Little honeybee
Aflo\3809501284
Apis florea
Little honeybee
Aflo\3809501924
Apis florea
Little honeybee
Aflo\3809501460
Apis florea
Little honeybee
Aflo\3809502484
Apis mellifera
Western honey bee
Amel\GB52653
Apis mellifera
Western honey bee
Amel\GB48897
Apis mellifera
Western honey bee
Amel\GB48899
Apis mellifera
Western honey bee
Amel\GB46095
Apis mellifera
Western honey bee
Amel\GB46096
Apis mellifera
Western honey bee
Amel\LOC726969
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP18418
Bombus terrestris
Buff-tailed bumblebee
Bter\15212749
Linepithema humile
Argentine ant
Lhum\LH24678
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:001cd9
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG007674
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_11313
Tribolium castaneum
Red flour beetle
Tcas\Fpps
Pediculus humanus
Human body louse
Phum\PHUM379630
Rhodnius prolixus
Kissing bug
Rpro\RPRC014226
Cimex lectularius
Bed bug
Clec\CLEC003525
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI000050
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI007080
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_02161
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X09BH )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strigamia maritima
European centipede
Smar\SMAR002512
Ixodes scapularis
Black-legged tick
Isca\ISCW009264
Stegodyphus mimosarum
African social velvet spider
Smim\KFM73140.1
Tetranychus urticae
Two-spotted spider mite
Turt\tetur05g07470
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_313317
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G0BPT )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_023294gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Fdps_1
Ciona intestinalis
Vase tunicate
Cint\LOC100176910
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000028880
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v7.1)
Drosophila melanogaster (Fruit fly) (3)
Gene Symbol
Score
Source
Compara
eggNOG
Homologene
Inparanoid
Isobase
OrthoDB
OrthoFinder
orthoMCL
Panther
RoundUp
Alignment
Pdss2
1 of 10
qless
1 of 10
qm
1 of 10
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Model Summary Ribbon
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 0 )
    Human Ortholog
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 2 )
    Allele
    Disease
    Interaction
    References
    Fppsk03514
    ameliorates  neurodegenerative disease
    modeled by SNF4Aγloe
    (Cook et al., 2012)
    Fppsk06103
    ameliorates  neurodegenerative disease
    modeled by SNF4Aγloe
    (Cook et al., 2012)
    Disease Associations of Human Orthologs (via DIOPT v7.1 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    FDPS; farnesyl diphosphate synthase
    15 of 15
    134629
      Functional Complementation Data
      Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
      Interactions
      Summary of Physical Interactions
      esyN Network Diagram
      Show neighbor-neighbor interactions:
      Select Layout:
      Legend:
      Protein
      RNA
      Selected Interactor(s)
      Interactions Browser
      View in Interactions Browser
      Please see the Physical Interaction reports below for full details
      protein-protein
      Physical Interaction
      Assay
      References
      Fpps - Act5C
      experimental knowledge based
      (Guruharsha et al., 2011)
      Fpps - Rae1
      experimental knowledge based
      (Guruharsha et al., 2011)
      Fpps - mtSSB
      experimental knowledge based
      (Guruharsha et al., 2011)
      Summary of Genetic Interactions
      esyN Network Diagram
      esyN Network Key:
      Suppression
      Enhancement
      View in Interactions Browser
      Please look at the allele data for full details of the genetic interactions
      Starting gene(s)
      Interaction type
      Interacting gene(s)
      Reference
      Fpps
      enhanceable
      Hmgcr
      (Santos and Lehmann, 2004)
      Fpps
      enhanceable
      qm
      (Santos and Lehmann, 2004)
      Starting gene(s)
      Interaction type
      Interacting gene(s)
      Reference
      Bx
      enhanceable
      Fpps
      (Bronstein et al., 2010)
      Chi
      suppressible
      Fpps
      (Bronstein et al., 2010)
      Hmgcr
      enhanceable
      Fpps
      (Santos and Lehmann, 2004)
      Neurl4
      suppressible
      Fpps
      (Jones and Macdonald, 2015)
      qm
      enhanceable
      Fpps
      (Santos and Lehmann, 2004)
      SNF4Aγ
      suppressible
      Fpps
      (Cook et al., 2012)
      External Data
      Linkouts
      BioGRID - A database of protein and genetic interactions.
      DroID - A comprehensive database of gene and protein interactions.
      InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
      MIST (genetic) - An integrated Molecular Interaction Database
      MIST (protein-protein) - An integrated Molecular Interaction Database
      Pathways
      Signaling Pathways (FlyBase)
      Metabolic Pathways
      FlyCyc Pathways - Pathways from a BioCyc PGDB for Dmel
      KEGG Pathways - Wiring diagrams of molecular interactions, reactions and relations.
      Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
      External Data
      Linkouts
      Genomic Location and Detailed Mapping Data
      Chromosome (arm)
      2R
      Recombination map

      2-64

      Cytogenetic map
      47F1-47F1
      Sequence location
      2R:11,305,511..11,307,528 [-]
      FlyBase Computed Cytological Location
      Cytogenetic map
      Evidence for location
      47F1-47F1
      Limits computationally determined from genome sequence between P{PZ}rM547 and P{lacW}Fppsk06103&P{lacW}Fppsk03514
      Experimentally Determined Cytological Location
      Cytogenetic map
      Notes
      References
      47F1-47F2
      (determined by in situ hybridisation)
      (Spradling et al., 1999, BDGP Project Members, 1994-1999)
      Experimentally Determined Recombination Data
      Location

      2-64

      (FlyBase, 2016)

      2-64.1

      (Comeron et al., 2012)
      Left of (cM)
      Right of (cM)
      Notes
      Stocks and Reagents
      Stocks (8)
      Genomic Clones (15)
       

      Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

      cDNA Clones (91)
       

      Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

      cDNA clones, fully sequences
      BDGP DGC clones
      Other clones
      Drosophila Genomics Resource Center cDNA clones

      For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

      cDNA Clones, End Sequenced (ESTs)
      BDGP DGC clones
      Other clones
      RNAi and Array Information
      Linkouts
      DRSC - Results frm RNAi screens
      GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
      Antibody Information
      Laboratory Generated Antibodies
       
      Commercially Available Antibodies
       
      Other Information
      Relationship to Other Genes
      Source for database identify of
      Source for database merge of

      Source for merge of: Fpps v(2)k03514

      (FlyBase, 1996-)

      Source for merge of: Fpps l(2)k06103

      (Spradling et al., 1999)
      Additional comments
      Other Comments

      Ortholog of B. mori juvenile-hormone-related genes (involved in JH biosynthesis, metabolism or signaling).

      (Cheng et al., 2014)

      Area matching Drosophila ESTs AA802928 and AA817115. Probable intron in gene represented by EST AA802928.

      (Davies, 2001.3.15)
      Origin and Etymology
      Discoverer
      Etymology
      Identification
      External Crossreferences and Linkouts ( 50 )
      Sequence Crossreferences
      NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
      GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
      GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
      RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
      UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
      Other crossreferences
      BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
      Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
      Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
      Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
      Flygut - An atlas of the Drosophila adult midgut
      GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
      iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
      InterPro - A database of protein families, domains and functional sites
      KEGG Genes - Molecular building blocks of life in the genomic space.
      modMine - A data warehouse for the modENCODE project
      Linkouts
      BioGRID - A database of protein and genetic interactions.
      DPiM - Drosophila Protein interaction map
      DroID - A comprehensive database of gene and protein interactions.
      DRSC - Results frm RNAi screens
      FLIGHT - Cell culture data for RNAi and other high-throughput technologies
      FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
      FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
      FlyCyc Pathways - Pathways from a BioCyc PGDB for Dmel
      FlyMine - An integrated database for Drosophila genomics
      InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
      KEGG Pathways - Wiring diagrams of molecular interactions, reactions and relations.
      MIST (genetic) - An integrated Molecular Interaction Database
      MIST (protein-protein) - An integrated Molecular Interaction Database
      Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
      Synonyms and Secondary IDs (15)
      Datasets (0)
      Study focus (0)
      Experimental Role
      Project
      Project Type
      Title
      References (54)