A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\Bub3

General Information
SymbolDmel\Bub3SpeciesD. melanogaster
NameBub3Annotation symbolCG7581
Feature typeprotein_coding_geneFlyBase IDFBgn0025457
Gene Model StatusCurrent Stock availability 2 publicly available
Genomic Location
Chromosome (arm)3RRecombination map3-
Cytogenetic map99B7-99B7Sequence location3R:25,499,855..25,501,141 [-]

Genomic Maps

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modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene Bub3 is referred to in FlyBase by the symbol Dmel\Bub3 (CG7581, FBgn0025457). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: mitotic cell cycle spindle assembly checkpoint; mitotic spindle organization. 5 alleles are reported. The phenotype of these alleles is annotated with: trichogen cell. It has one annotated transcript and one annotated polypeptide. Protein features are: G-protein beta WD-40 repeat; WD40 repeat; WD40 repeat 2; WD40 repeat, conserved site; WD40 repeat, subgroup; WD40 repeat-like-containing domain; WD40-repeat-containing domain; WD40/YVTN repeat-like-containing domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, inseminated spermatheca, adult male reproductive system, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1637317_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Bub3. Gene sequence location is 3R:25499855..25501141.

External Summaries
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01
Sequence features
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
99B7-99B7  
Limits computationally determined from genome sequence between P{PZ}l(3)0674306743 and P{PZ}ncd05884  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
22F-23A  
99B2-99B4  
99B3-99B5  
(determined by in situ hybridisation)  
99B2-99B4  
Map position is based on hybridisation of a Bub3 cDNA clone to P1 clones DS04127 and DS07294.  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\Bub3 for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0085450 FBtr0085451 FBtr0085465 FBtr0085452 FBpp0084816 FBpp0084817 FBpp0084831 FBpp0084818 FBti0145187 FBti0101672 FBti0103288 FBti0104260 FBti0126343_2 FBti0126343_1 FBti0075832 FBti0037467 FBti0042227
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0085465
  1234
  326
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0084831  
37.4  
326  
6.51  
Additional Polypeptide Data & Comments
Reported size (kDa)
327 (aa); 37 (kD observed); 37 (kD predicted)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
No Assay Recorded
Stage
Tissue/Position (including subcellular localization)
Reference
epitope tag
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:Localization observed prometaphase until late anaphase of embryonic cycle 14
Additional Descriptive Data
Bub3 protein shows a dynamic, cell cycle-dependent distribution pattern. During mitosis in cycling larval neuroblasts, interphase cells show a diffuse, nucleoplasmic staining. Bub3 protein becomes clearly localized to the kinetochore regions of the condensed chromosomes during prophase and prometaphase. As the chromosomes move to the metaphase plate, the intensity of Bub3 staining diminishes significantly. Weak kinetochore staining can be seen in early anaphase but disappears late in anaphase and telophase. During meiosis in spermatocytes Bub3 protein localizes to the kinetochores in prometaphase. It is also seen at the kinetochore region of spermatocytes during prophase/prometaphse of the second meiotic division. During metaphase, kinetochore staining becomes undetectable and no specific staining is observed in anaphase or telophase. In both mitosis and meiosis, Bub3 binds to the kinetochore during prophase/prometaphase. When individual chromosomes have reached a stable bipolar orientation at the metaphase plate, Bub3 protein begins to dissociate from the kinetochore.
Marker for
Subcellular Localization
CV Term
kinetochore
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view ppk19-RA Bub3-RA CAP-D2-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0025457


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0025457
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0025457 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 10040
embryo 02-04hr
 
 18093
embryo 04-06hr
 
 23558
embryo 06-08hr
 
 15209
embryo 08-10hr
 
 12130
embryo 10-12hr
 
 6492
embryo 12-14hr
 
 4689
embryo 14-16hr
 
 4403
embryo 16-18hr
 
 3419
embryo 18-20hr
 
 1959
embryo 20-22hr
 
 4379
embryo 22-24hr
 
 3784
larva L1
 
 1711
larva L2
 
 1715
larva L3 12hr old
 
 1454
larva L3 puffstage 1-2
 
 2726
larva L3 puffstage 3-6
 
 3101
larva L3 puffstage 7-9
 
 3868
white prepupae new
 
 3419
white prepupae 12hr
 
 4075
white prepupae 24hr
 
 4280
pupae 2d postWPP
 
 1995
pupae 3d postWPP
 
 1075
pupae 4d postWPP
 
 895
adult male 01day
 
 725
adult male 05day
 
 912
adult male 30day
 
 830
adult female 01day
 
 3079
adult female 05day
 
 5058
adult female 30day
 
 5104
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (10040)
embryo 02-04hr
 (18093)
embryo 04-06hr
 (23558)
embryo 06-08hr
 (15209)
embryo 08-10hr
 (12130)
embryo 10-12hr
 (6492)
embryo 12-14hr
 (4689)
embryo 14-16hr
 (4403)
embryo 16-18hr
 (3419)
embryo 18-20hr
 (1959)
embryo 20-22hr
 (4379)
embryo 22-24hr
 (3784)
larva L1
 (1711)
larva L2
 (1715)
larva L3 12hr old
 (1454)
larva L3 puffstage 1-2
 (2726)
larva L3 puffstage 3-6
 (3101)
larva L3 puffstage 7-9
 (3868)
white prepupae new
 (3419)
white prepupae 12hr
 (4075)
white prepupae 24hr
 (4280)
pupae 2d postWPP
 (1995)
pupae 3d postWPP
 (1075)
pupae 4d postWPP
 (895)
adult male 01day
 (725)
adult male 05day
 (912)
adult male 30day
 (830)
adult female 01day
 (3079)
adult female 05day
 (5058)
adult female 30day
 (5104)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (10040)
embryo 02-04hr
 (18093)
embryo 04-06hr
 (23558)
embryo 06-08hr
 (15209)
embryo 08-10hr
 (12130)
embryo 10-12hr
 (6492)
embryo 12-14hr
 (4689)
embryo 14-16hr
 (4403)
embryo 16-18hr
 (3419)
embryo 18-20hr
 (1959)
embryo 20-22hr
 (4379)
embryo 22-24hr
 (3784)
larva L1
 (1711)
larva L2
 (1715)
larva L3 12hr old
 1454
larva L3 puffstage 1-2
 (2726)
larva L3 puffstage 3-6
 (3101)
larva L3 puffstage 7-9
 (3868)
white prepupae new
 (3419)
white prepupae 12hr
 (4075)
white prepupae 24hr
 (4280)
pupae 2d postWPP
 (1995)
pupae 3d postWPP
 
 1075
pupae 4d postWPP
 
 895
adult male 01day
 
 725
adult male 05day
 
 912
adult male 30day
 
 830
adult female 01day
 (3079)
adult female 05day
 (5058)
adult female 30day
 (5104)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 10040
embryo 02-04hr
 (18093)
embryo 04-06hr
 (23558)
embryo 06-08hr
 (15209)
embryo 08-10hr
 (12130)
embryo 10-12hr
 
 6492
embryo 12-14hr
 
 4689
embryo 14-16hr
 
 4403
embryo 16-18hr
 
 3419
embryo 18-20hr
 
 1959
embryo 20-22hr
 
 4379
embryo 22-24hr
 
 3784
larva L1
 
 1711
larva L2
 
 1715
larva L3 12hr old
 
 1454
larva L3 puffstage 1-2
 
 2726
larva L3 puffstage 3-6
 
 3101
larva L3 puffstage 7-9
 
 3868
white prepupae new
 
 3419
white prepupae 12hr
 
 4075
white prepupae 24hr
 
 4280
pupae 2d postWPP
 
 1995
pupae 3d postWPP
 
 1075
pupae 4d postWPP
 
 895
adult male 01day
 
 725
adult male 05day
 
 912
adult male 30day
 
 830
adult female 01day
 
 3079
adult female 05day
 
 5058
adult female 30day
 
 5104
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 10040
embryo 02-04hr
 
 18093
embryo 04-06hr
 
 23558
embryo 06-08hr
 
 15209
embryo 08-10hr
 
 12130
embryo 10-12hr
 
 6492
embryo 12-14hr
 
 4689
embryo 14-16hr
 
 4403
embryo 16-18hr
 
 3419
embryo 18-20hr
 
 1959
embryo 20-22hr
 
 4379
embryo 22-24hr
 
 3784
larva L1
 
 1711
larva L2
 
 1715
larva L3 12hr old
 
 1454
larva L3 puffstage 1-2
 
 2726
larva L3 puffstage 3-6
 
 3101
larva L3 puffstage 7-9
 
 3868
white prepupae new
 
 3419
white prepupae 12hr
 
 4075
white prepupae 24hr
 
 4280
pupae 2d postWPP
 
 1995
pupae 3d postWPP
 
 1075
pupae 4d postWPP
 
 895
adult male 01day
 
 725
adult male 05day
 
 912
adult male 30day
 
 830
adult female 01day
 
 3079
adult female 05day
 
 5058
adult female 30day
 
 5104
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0025457 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 10040
embryo 02-04hr
 
 18093
embryo 04-06hr
 
 23558
embryo 06-08hr
 
 15209
embryo 08-10hr
 
 12130
embryo 10-12hr
 
 6492
embryo 12-14hr
 
 4689
embryo 14-16hr
 
 4403
embryo 16-18hr
 
 3419
embryo 18-20hr
 
 1959
embryo 20-22hr
 
 4379
embryo 22-24hr
 
 3784
larva L1
 
 1711
larva L2
 
 1715
larva L3 12hr old
 
 1454
larva L3 puffstage 1-2
 
 2726
larva L3 puffstage 3-6
 
 3101
larva L3 puffstage 7-9
 
 3868
white prepupae new
 
 3419
white prepupae 12hr
 
 4075
white prepupae 24hr
 
 4280
pupae 2d postWPP
 
 1995
pupae 3d postWPP
 
 1075
pupae 4d postWPP
 
 895
adult male 01day
 
 725
adult male 05day
 
 912
adult male 30day
 
 830
adult female 01day
 
 3079
adult female 05day
 
 5058
adult female 30day
 
 5104
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (10040)
embryo 02-04hr
 (18093)
embryo 04-06hr
 (23558)
embryo 06-08hr
 (15209)
embryo 08-10hr
 (12130)
embryo 10-12hr
 (6492)
embryo 12-14hr
 (4689)
embryo 14-16hr
 (4403)
embryo 16-18hr
 (3419)
embryo 18-20hr
 (1959)
embryo 20-22hr
 (4379)
embryo 22-24hr
 (3784)
larva L1
 (1711)
larva L2
 (1715)
larva L3 12hr old
 (1454)
larva L3 puffstage 1-2
 (2726)
larva L3 puffstage 3-6
 (3101)
larva L3 puffstage 7-9
 (3868)
white prepupae new
 (3419)
white prepupae 12hr
 (4075)
white prepupae 24hr
 (4280)
pupae 2d postWPP
 (1995)
pupae 3d postWPP
 (1075)
pupae 4d postWPP
 (895)
adult male 01day
 (725)
adult male 05day
 (912)
adult male 30day
 (830)
adult female 01day
 (3079)
adult female 05day
 (5058)
adult female 30day
 (5104)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (10040)
embryo 02-04hr
 (18093)
embryo 04-06hr
 (23558)
embryo 06-08hr
 (15209)
embryo 08-10hr
 (12130)
embryo 10-12hr
 (6492)
embryo 12-14hr
 (4689)
embryo 14-16hr
 (4403)
embryo 16-18hr
 (3419)
embryo 18-20hr
 1959
embryo 20-22hr
 (4379)
embryo 22-24hr
 (3784)
larva L1
 1711
larva L2
 1715
larva L3 12hr old
 1454
larva L3 puffstage 1-2
 (2726)
larva L3 puffstage 3-6
 (3101)
larva L3 puffstage 7-9
 (3868)
white prepupae new
 (3419)
white prepupae 12hr
 (4075)
white prepupae 24hr
 (4280)
pupae 2d postWPP
 1995
pupae 3d postWPP
 
 1075
pupae 4d postWPP
 
 895
adult male 01day
 
 725
adult male 05day
 
 912
adult male 30day
 
 830
adult female 01day
 (3079)
adult female 05day
 (5058)
adult female 30day
 (5104)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 10040
embryo 02-04hr
 18093
embryo 04-06hr
 (23558)
embryo 06-08hr
 15209
embryo 08-10hr
 12130
embryo 10-12hr
 
 6492
embryo 12-14hr
 
 4689
embryo 14-16hr
 
 4403
embryo 16-18hr
 
 3419
embryo 18-20hr
 
 1959
embryo 20-22hr
 
 4379
embryo 22-24hr
 
 3784
larva L1
 
 1711
larva L2
 
 1715
larva L3 12hr old
 
 1454
larva L3 puffstage 1-2
 
 2726
larva L3 puffstage 3-6
 
 3101
larva L3 puffstage 7-9
 
 3868
white prepupae new
 
 3419
white prepupae 12hr
 
 4075
white prepupae 24hr
 
 4280
pupae 2d postWPP
 
 1995
pupae 3d postWPP
 
 1075
pupae 4d postWPP
 
 895
adult male 01day
 
 725
adult male 05day
 
 912
adult male 30day
 
 830
adult female 01day
 
 3079
adult female 05day
 
 5058
adult female 30day
 
 5104
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 10040
embryo 02-04hr
 
 18093
embryo 04-06hr
 
 23558
embryo 06-08hr
 
 15209
embryo 08-10hr
 
 12130
embryo 10-12hr
 
 6492
embryo 12-14hr
 
 4689
embryo 14-16hr
 
 4403
embryo 16-18hr
 
 3419
embryo 18-20hr
 
 1959
embryo 20-22hr
 
 4379
embryo 22-24hr
 
 3784
larva L1
 
 1711
larva L2
 
 1715
larva L3 12hr old
 
 1454
larva L3 puffstage 1-2
 
 2726
larva L3 puffstage 3-6
 
 3101
larva L3 puffstage 7-9
 
 3868
white prepupae new
 
 3419
white prepupae 12hr
 
 4075
white prepupae 24hr
 
 4280
pupae 2d postWPP
 
 1995
pupae 3d postWPP
 
 1075
pupae 4d postWPP
 
 895
adult male 01day
 
 725
adult male 05day
 
 912
adult male 30day
 
 830
adult female 01day
 
 3079
adult female 05day
 
 5058
adult female 30day
 
 5104
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0025457


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0025457
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, inseminated spermatheca, adult male reproductive system, larval carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0025457 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 986.575
Larval Midgut
 
 148.9
Larval Hindgut
 
 192.5
Larval Malpighian Tubules
 
 171.8
Larval Fat Body
 
 204.5
Larval Salivary Gland
 
 399.4
Larval Trachea
 
 445.625
Larval Carcass
 
 252.625
Adult Head
 
 129.6
Adult Eye
 
 86.5
Adult Brain
 
 218.1
Adult Thoracic-Abdominal Ganglion
 
 133.1
Adult Crop
 
 118.5
Adult Midgut
 
 143.4
Adult Hindgut
 
 116.4
Adult Malpighian Tubules
 
 128.8
Adult Fat Body
 
 107.1
Adult Salivary Gland
 
 145.1
Adult Heart
 
 100.175
Adult VirginFemale Spermatheca
 
 89.8
Adult InseminatedFemale Spermatheca
 
 101.5
Adult Ovary
 
 689.4
Adult Testis
 
 138.2
Adult Male Accessory Gland
 
 138.6
Adult Carcass
 
 95.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (986.575)
Larval Midgut
 
 148.9
Larval Hindgut
 
 192.5
Larval Malpighian Tubules
 
 171.8
Larval Fat Body
 
 204.5
Larval Salivary Gland
 
 399.4
Larval Trachea
 
 445.625
Larval Carcass
 
 252.625
Adult Head
 
 129.6
Adult Eye
 
 86.5
Adult Brain
 
 218.1
Adult Thoracic-Abdominal Ganglion
 
 133.1
Adult Crop
 
 118.5
Adult Midgut
 
 143.4
Adult Hindgut
 
 116.4
Adult Malpighian Tubules
 
 128.8
Adult Fat Body
 
 107.1
Adult Salivary Gland
 
 145.1
Adult Heart
 
 100.175
Adult VirginFemale Spermatheca
 
 89.8
Adult InseminatedFemale Spermatheca
 
 101.5
Adult Ovary
 (689.4)
Adult Testis
 
 138.2
Adult Male Accessory Gland
 
 138.6
Adult Carcass
 
 95.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 986.575
Larval Midgut
 
 148.9
Larval Hindgut
 
 192.5
Larval Malpighian Tubules
 
 171.8
Larval Fat Body
 
 204.5
Larval Salivary Gland
 
 399.4
Larval Trachea
 
 445.625
Larval Carcass
 
 252.625
Adult Head
 
 129.6
Adult Eye
 
 86.5
Adult Brain
 
 218.1
Adult Thoracic-Abdominal Ganglion
 
 133.1
Adult Crop
 
 118.5
Adult Midgut
 
 143.4
Adult Hindgut
 
 116.4
Adult Malpighian Tubules
 
 128.8
Adult Fat Body
 
 107.1
Adult Salivary Gland
 
 145.1
Adult Heart
 
 100.175
Adult VirginFemale Spermatheca
 
 89.8
Adult InseminatedFemale Spermatheca
 
 101.5
Adult Ovary
 
 689.4
Adult Testis
 
 138.2
Adult Male Accessory Gland
 
 138.6
Adult Carcass
 
 95.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 986.575
Larval Midgut
 
 148.9
Larval Hindgut
 
 192.5
Larval Malpighian Tubules
 
 171.8
Larval Fat Body
 
 204.5
Larval Salivary Gland
 
 399.4
Larval Trachea
 
 445.625
Larval Carcass
 
 252.625
Adult Head
 
 129.6
Adult Eye
 
 86.5
Adult Brain
 
 218.1
Adult Thoracic-Abdominal Ganglion
 
 133.1
Adult Crop
 
 118.5
Adult Midgut
 
 143.4
Adult Hindgut
 
 116.4
Adult Malpighian Tubules
 
 128.8
Adult Fat Body
 
 107.1
Adult Salivary Gland
 
 145.1
Adult Heart
 
 100.175
Adult VirginFemale Spermatheca
 
 89.8
Adult InseminatedFemale Spermatheca
 
 101.5
Adult Ovary
 
 689.4
Adult Testis
 
 138.2
Adult Male Accessory Gland
 
 138.6
Adult Carcass
 
 95.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0025457 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 986.575
Larval Midgut
 
 148.9
Larval Hindgut
 
 192.5
Larval Malpighian Tubules
 
 171.8
Larval Fat Body
 
 204.5
Larval Salivary Gland
 
 399.4
Larval Trachea
 
 445.625
Larval Carcass
 
 252.625
Adult Head
 
 129.6
Adult Eye
 
 86.5
Adult Brain
 
 218.1
Adult Thoracic-Abdominal Ganglion
 
 133.1
Adult Crop
 
 118.5
Adult Midgut
 
 143.4
Adult Hindgut
 
 116.4
Adult Malpighian Tubules
 
 128.8
Adult Fat Body
 
 107.1
Adult Salivary Gland
 
 145.1
Adult Heart
 
 100.175
Adult VirginFemale Spermatheca
 
 89.8
Adult InseminatedFemale Spermatheca
 
 101.5
Adult Ovary
 
 689.4
Adult Testis
 
 138.2
Adult Male Accessory Gland
 
 138.6
Adult Carcass
 
 95.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 (986.575)
Larval Midgut
 
 148.9
Larval Hindgut
 
 192.5
Larval Malpighian Tubules
 
 171.8
Larval Fat Body
 
 204.5
Larval Salivary Gland
 
 399.4
Larval Trachea
 
 445.625
Larval Carcass
 
 252.625
Adult Head
 
 129.6
Adult Eye
 
 86.5
Adult Brain
 
 218.1
Adult Thoracic-Abdominal Ganglion
 
 133.1
Adult Crop
 
 118.5
Adult Midgut
 
 143.4
Adult Hindgut
 
 116.4
Adult Malpighian Tubules
 
 128.8
Adult Fat Body
 
 107.1
Adult Salivary Gland
 
 145.1
Adult Heart
 
 100.175
Adult VirginFemale Spermatheca
 
 89.8
Adult InseminatedFemale Spermatheca
 
 101.5
Adult Ovary
 689.4
Adult Testis
 
 138.2
Adult Male Accessory Gland
 
 138.6
Adult Carcass
 
 95.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 986.575
Larval Midgut
 
 148.9
Larval Hindgut
 
 192.5
Larval Malpighian Tubules
 
 171.8
Larval Fat Body
 
 204.5
Larval Salivary Gland
 
 399.4
Larval Trachea
 
 445.625
Larval Carcass
 
 252.625
Adult Head
 
 129.6
Adult Eye
 
 86.5
Adult Brain
 
 218.1
Adult Thoracic-Abdominal Ganglion
 
 133.1
Adult Crop
 
 118.5
Adult Midgut
 
 143.4
Adult Hindgut
 
 116.4
Adult Malpighian Tubules
 
 128.8
Adult Fat Body
 
 107.1
Adult Salivary Gland
 
 145.1
Adult Heart
 
 100.175
Adult VirginFemale Spermatheca
 
 89.8
Adult InseminatedFemale Spermatheca
 
 101.5
Adult Ovary
 
 689.4
Adult Testis
 
 138.2
Adult Male Accessory Gland
 
 138.6
Adult Carcass
 
 95.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 986.575
Larval Midgut
 
 148.9
Larval Hindgut
 
 192.5
Larval Malpighian Tubules
 
 171.8
Larval Fat Body
 
 204.5
Larval Salivary Gland
 
 399.4
Larval Trachea
 
 445.625
Larval Carcass
 
 252.625
Adult Head
 
 129.6
Adult Eye
 
 86.5
Adult Brain
 
 218.1
Adult Thoracic-Abdominal Ganglion
 
 133.1
Adult Crop
 
 118.5
Adult Midgut
 
 143.4
Adult Hindgut
 
 116.4
Adult Malpighian Tubules
 
 128.8
Adult Fat Body
 
 107.1
Adult Salivary Gland
 
 145.1
Adult Heart
 
 100.175
Adult VirginFemale Spermatheca
 
 89.8
Adult InseminatedFemale Spermatheca
 
 101.5
Adult Ovary
 
 689.4
Adult Testis
 
 138.2
Adult Male Accessory Gland
 
 138.6
Adult Carcass
 
 95.4
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 129.6
 
NA 
Eye
 
 86.5
 
NA 
Brain
 
 218.1
 
986.575 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 133.1
 
NA 
Crop
 
 118.5
 
148.9 
Midgut
 
 143.4
 
192.5 
Hindgut
 
 116.4
 
171.8 
Malpighian Tubules
 
 128.8
 
204.5 
Fat Body
 
 107.1
 
399.4 
Salivary Gland
 
 145.1
 
NA 
Heart
 
 100.175
 
445.625 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 89.8
 
NA 
InseminatedFemale Spermatheca
 
 101.5
 
NA 
Ovary
 
 689.4
 
NA 
Testis
 
 138.2
 
NA 
Male Accessory Gland
 
 138.6
 
252.625 
Carcass
 
 95.4

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
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Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyExpress - Embryonic expression images (BDGP data)
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hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 2 )
For All Classical Alleles Show

Allele of Bub3ClassMutagenStocksKnown lesion
Bub31
0 --
Bub32330 Yes
hide Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show

Allele of Bub3ClassMutagenStocksKnown lesion
Bub3GD99241 Yes
Bub3HMS007891 Yes
Bub3T:Avic\GFP-EGFP0 Yes
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Transgenic Constructs
Type of construct
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Expression data
UAS construct
characterization construct
Insertions
Type of insertions
Name
Expression data
miscellaneous insertions
hide Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
hide Terms Based on Experimental Evidence ( 5 terms )
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References
inferred from mutant phenotype
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CV term
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inferred from direct assay
hide Terms Based on Predictions or Assertions ( 1 term )
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CV term
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non-traceable author statement
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Interacts with
Please look at the allele data for full details of the genetic interactions
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BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
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InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
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Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
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hide Stocks Listed in FlyBase ( 2 )
Bloomington
VDRC
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Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 106 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
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Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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polyclonal
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Source for database identity of
Source for database merge of
Additional comments
FlyBase curator comment: the insertion in the "f03381" Exelixis line (PBac{WH}CAP-D2f03381) was originally assigned to the Bub3 gene in FBrf0179797, resulting in the "Bub3f03381" (FBal0162743) allele. However, FBrf0184340 shows that the insertion is actually within CAP-D2.
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RNAi screen using dsRNA made from templates generated with primers directed against this gene results in chromosome misalignment on the metaphase spindle when assayed in S2 cells. This phenotype can be observed when the screen is performed with or without Cdc27 dsRNA.
dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym
Name Synonym
Bub3
 
Secondary FlyBase IDs
hide References ( 47 )
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hide Recent research papers ( 1 )
Przewloka et al., 2011, Curr. Biol. 21(5): 399--405
CENP-C Is a Structural Platform for Kinetochore Assembly. [FBrf0213151]
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All reviews listed in FlyBase were published before 2010