Gene Dmel\CG13360

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General Information

Symbol

Dmel\CG13360

Species

D. melanogaster

Name

Annotation symbol

CG13360

Feature type

protein_coding_gene

FlyBase ID

FBgn0025620

Gene Model Status

Current

Stock availability

2 publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

1C4-1C4

Sequence location

X:681,888..684,122 [-]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG13360 (FBgn0025620). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: transferase activity, transferring phosphorus-containing groups. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: CHK kinase-like; Protein kinase-like domain; Protein of unknown function DUF227. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of extremely low expression. Peak expression observed at stages throughout the larval period. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval/adult fat body, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult midgut, larval hindgut, adult heart, adult spermathecae. Comments on Affy2 ProbeSet: ProbeSet 1641711_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG13360. Gene sequence location is X:681888..684122.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

1C4-1C4

Limits computationally determined from genome sequence between P{EP}sdk^EP369 and P{EP}EP1600&P{EP}EP1498

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG13360 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.47

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG13360-RA

FBtr0070147

NM_130503

1603

421

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG13360-PA

FBpp0070142

48.7

421

6.44

NP_569859

AAF45549

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

CHK kinase-like (IPR015897)

Protein of unknown function DUF227 (IPR004119)

Protein kinase-like domain (IPR011009)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

O77436

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 4 -- 6

dorsal ectoderm anlage

(Fisher et al., 2012)

Comment:anlage in statu nascendi

embryonic stage 13 -- 16

embryonic/larval dorsal vessel

(Fisher et al., 2012)

embryonic/larval midgut

(Fisher et al., 2012)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval/adult fat body, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult midgut, larval hindgut, adult heart, adult spermathecae.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		2.025
Larval Midgut		7.7
Larval Hindgut		119.6
Larval Malpighian Tubules		2.9
Larval Fat Body		790.8
Larval Salivary Gland		62.2
Larval Trachea		47.225
Larval Carcass		29.075
Adult Head		197.1
Adult Eye		37.4
Adult Brain		37.1
Adult Thoracic-Abdominal Ganglion		7.6
Adult Crop		8
Adult Midgut		378.9
Adult Hindgut		38.9
Adult Malpighian Tubules		8
Adult Fat Body		1178.8
Adult Salivary Gland		5.7
Adult Heart		439.65
Adult VirginFemale Spermatheca		482.7
Adult InseminatedFemale Spermatheca		487.9
Adult Ovary		2.5
Adult Testis		50.6
Adult Male Accessory Gland		6.6
Adult Carcass		532.7
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		2.025
Larval Midgut		7.7
Larval Hindgut		119.6
Larval Malpighian Tubules		2.9
Larval Fat Body		(790.8)
Larval Salivary Gland		62.2
Larval Trachea		47.225
Larval Carcass		29.075
Adult Head		197.1
Adult Eye		37.4
Adult Brain		37.1
Adult Thoracic-Abdominal Ganglion		7.6
Adult Crop		8
Adult Midgut		378.9
Adult Hindgut		38.9
Adult Malpighian Tubules		8
Adult Fat Body		(1178.8)
Adult Salivary Gland		5.7
Adult Heart		439.65
Adult VirginFemale Spermatheca		482.7
Adult InseminatedFemale Spermatheca		487.9
Adult Ovary		2.5
Adult Testis		50.6
Adult Male Accessory Gland		6.6
Adult Carcass		532.7
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		2.025
Larval Midgut		7.7
Larval Hindgut		119.6
Larval Malpighian Tubules		2.9
Larval Fat Body		790.8
Larval Salivary Gland		62.2
Larval Trachea		47.225
Larval Carcass		29.075
Adult Head		197.1
Adult Eye		37.4
Adult Brain		37.1
Adult Thoracic-Abdominal Ganglion		7.6
Adult Crop		8
Adult Midgut		378.9
Adult Hindgut		38.9
Adult Malpighian Tubules		8
Adult Fat Body		(1178.8)
Adult Salivary Gland		5.7
Adult Heart		439.65
Adult VirginFemale Spermatheca		482.7
Adult InseminatedFemale Spermatheca		487.9
Adult Ovary		2.5
Adult Testis		50.6
Adult Male Accessory Gland		6.6
Adult Carcass		532.7
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		2.025
Larval Midgut		7.7
Larval Hindgut		119.6
Larval Malpighian Tubules		2.9
Larval Fat Body		790.8
Larval Salivary Gland		62.2
Larval Trachea		47.225
Larval Carcass		29.075
Adult Head		197.1
Adult Eye		37.4
Adult Brain		37.1
Adult Thoracic-Abdominal Ganglion		7.6
Adult Crop		8
Adult Midgut		378.9
Adult Hindgut		38.9
Adult Malpighian Tubules		8
Adult Fat Body		1178.8
Adult Salivary Gland		5.7
Adult Heart		439.65
Adult VirginFemale Spermatheca		482.7
Adult InseminatedFemale Spermatheca		487.9
Adult Ovary		2.5
Adult Testis		50.6
Adult Male Accessory Gland		6.6
Adult Carcass		532.7
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		2.025
Larval Midgut		7.7
Larval Hindgut		119.6
Larval Malpighian Tubules		2.9
Larval Fat Body		790.8
Larval Salivary Gland		62.2
Larval Trachea		47.225
Larval Carcass		29.075
Adult Head		197.1
Adult Eye		37.4
Adult Brain		37.1
Adult Thoracic-Abdominal Ganglion		7.6
Adult Crop		8
Adult Midgut		378.9
Adult Hindgut		38.9
Adult Malpighian Tubules		8
Adult Fat Body		1178.8
Adult Salivary Gland		5.7
Adult Heart		439.65
Adult VirginFemale Spermatheca		482.7
Adult InseminatedFemale Spermatheca		487.9
Adult Ovary		2.5
Adult Testis		50.6
Adult Male Accessory Gland		6.6
Adult Carcass		532.7
Expression Level Scale		None Low Moderate High Very high

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		2.025
Larval Midgut		7.7
Larval Hindgut		119.6
Larval Malpighian Tubules		2.9
Larval Fat Body		790.8
Larval Salivary Gland		62.2
Larval Trachea		47.225
Larval Carcass		29.075
Adult Head		197.1
Adult Eye		37.4
Adult Brain		37.1
Adult Thoracic-Abdominal Ganglion		7.6
Adult Crop		8
Adult Midgut		378.9
Adult Hindgut		38.9
Adult Malpighian Tubules		8
Adult Fat Body		(1178.8)
Adult Salivary Gland		5.7
Adult Heart		439.65
Adult VirginFemale Spermatheca		482.7
Adult InseminatedFemale Spermatheca		487.9
Adult Ovary		2.5
Adult Testis		50.6
Adult Male Accessory Gland		6.6
Adult Carcass		532.7
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		2.025
Larval Midgut		7.7
Larval Hindgut		119.6
Larval Malpighian Tubules		2.9
Larval Fat Body		790.8
Larval Salivary Gland		62.2
Larval Trachea		47.225
Larval Carcass		29.075
Adult Head		197.1
Adult Eye		37.4
Adult Brain		37.1
Adult Thoracic-Abdominal Ganglion		7.6
Adult Crop		8
Adult Midgut		378.9
Adult Hindgut		38.9
Adult Malpighian Tubules		8
Adult Fat Body		1178.8
Adult Salivary Gland		5.7
Adult Heart		439.65
Adult VirginFemale Spermatheca		482.7
Adult InseminatedFemale Spermatheca		487.9
Adult Ovary		2.5
Adult Testis		50.6
Adult Male Accessory Gland		6.6
Adult Carcass		532.7
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		2.025
Larval Midgut		7.7
Larval Hindgut		119.6
Larval Malpighian Tubules		2.9
Larval Fat Body		790.8
Larval Salivary Gland		62.2
Larval Trachea		47.225
Larval Carcass		29.075
Adult Head		197.1
Adult Eye		37.4
Adult Brain		37.1
Adult Thoracic-Abdominal Ganglion		7.6
Adult Crop		8
Adult Midgut		378.9
Adult Hindgut		38.9
Adult Malpighian Tubules		8
Adult Fat Body		1178.8
Adult Salivary Gland		5.7
Adult Heart		439.65
Adult VirginFemale Spermatheca		482.7
Adult InseminatedFemale Spermatheca		487.9
Adult Ovary		2.5
Adult Testis		50.6
Adult Male Accessory Gland		6.6
Adult Carcass		532.7
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	197.1
NA	Eye	37.4
NA	Brain	37.1
2.025	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	7.6
NA	Crop	8
7.7	Midgut	378.9
119.6	Hindgut	38.9
2.9	Malpighian Tubules	8
790.8	Fat Body	1178.8
62.2	Salivary Gland	5.7
NA	Heart	439.65
47.225	Trachea	NA
NA	VirginFemale Spermatheca	482.7
NA	InseminatedFemale Spermatheca	487.9
NA	Ovary	2.5
NA	Testis	50.6
NA	Male Accessory Gland	6.6
29.075	Carcass	532.7

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		3
central nervous system, larvae L3		0
central nervous system, pupae P8		1
head, virgin 1-day female		70
head, virgin 4-day female		40
head, virgin 20-day female		42
head, mated 1-day female		57
head, mated 4-day female		118
head, mated 20-day female		38
head, mated 1-day male		50
head, mated 4-day male		40
head, mated 20-day male		18
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		11
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		248
fat body, white prepupae		2
fat body, pupae P8		2
carcass, larvae L3 wandering		5
carcass, 1-day adult		51
carcass, 4-day adult		52
carcass, 20-day adult		54
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		7
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		3
central nervous system, larvae L3		0
central nervous system, pupae P8		1
head, virgin 1-day female		(70)
head, virgin 4-day female		(40)
head, virgin 20-day female		(42)
head, mated 1-day female		(57)
head, mated 4-day female		(118)
head, mated 20-day female		(38)
head, mated 1-day male		(50)
head, mated 4-day male		(40)
head, mated 20-day male		18
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		11
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		(248)
fat body, white prepupae		2
fat body, pupae P8		2
carcass, larvae L3 wandering		5
carcass, 1-day adult		(51)
carcass, 4-day adult		(52)
carcass, 20-day adult		(54)
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		7
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		3
central nervous system, larvae L3		0
central nervous system, pupae P8		1
head, virgin 1-day female		70
head, virgin 4-day female		40
head, virgin 20-day female		42
head, mated 1-day female		57
head, mated 4-day female		(118)
head, mated 20-day female		38
head, mated 1-day male		50
head, mated 4-day male		40
head, mated 20-day male		18
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		11
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		(248)
fat body, white prepupae		2
fat body, pupae P8		2
carcass, larvae L3 wandering		5
carcass, 1-day adult		51
carcass, 4-day adult		52
carcass, 20-day adult		54
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		7
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		3
central nervous system, larvae L3		0
central nervous system, pupae P8		1
head, virgin 1-day female		70
head, virgin 4-day female		40
head, virgin 20-day female		42
head, mated 1-day female		57
head, mated 4-day female		118
head, mated 20-day female		38
head, mated 1-day male		50
head, mated 4-day male		40
head, mated 20-day male		18
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		11
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		248
fat body, white prepupae		2
fat body, pupae P8		2
carcass, larvae L3 wandering		5
carcass, 1-day adult		51
carcass, 4-day adult		52
carcass, 20-day adult		54
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		7
accessory gland, mated 4-day male		2
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		3
central nervous system, larvae L3		0
central nervous system, pupae P8		1
head, virgin 1-day female		70
head, virgin 4-day female		40
head, virgin 20-day female		42
head, mated 1-day female		57
head, mated 4-day female		118
head, mated 20-day female		38
head, mated 1-day male		50
head, mated 4-day male		40
head, mated 20-day male		18
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		11
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		248
fat body, white prepupae		2
fat body, pupae P8		2
carcass, larvae L3 wandering		5
carcass, 1-day adult		51
carcass, 4-day adult		52
carcass, 20-day adult		54
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		7
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		3
central nervous system, larvae L3		0
central nervous system, pupae P8		1
head, virgin 1-day female		(70)
head, virgin 4-day female		(40)
head, virgin 20-day female		(42)
head, mated 1-day female		(57)
head, mated 4-day female		(118)
head, mated 20-day female		(38)
head, mated 1-day male		(50)
head, mated 4-day male		(40)
head, mated 20-day male		18
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		11
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		(248)
fat body, white prepupae		2
fat body, pupae P8		2
carcass, larvae L3 wandering		5
carcass, 1-day adult		(51)
carcass, 4-day adult		(52)
carcass, 20-day adult		(54)
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		7
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		3
central nervous system, larvae L3		0
central nervous system, pupae P8		1
head, virgin 1-day female		70
head, virgin 4-day female		40
head, virgin 20-day female		42
head, mated 1-day female		57
head, mated 4-day female		118
head, mated 20-day female		38
head, mated 1-day male		50
head, mated 4-day male		40
head, mated 20-day male		18
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		11
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		(248)
fat body, white prepupae		2
fat body, pupae P8		2
carcass, larvae L3 wandering		5
carcass, 1-day adult		51
carcass, 4-day adult		52
carcass, 20-day adult		54
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		7
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		3
central nervous system, larvae L3		0
central nervous system, pupae P8		1
head, virgin 1-day female		70
head, virgin 4-day female		40
head, virgin 20-day female		42
head, mated 1-day female		57
head, mated 4-day female		118
head, mated 20-day female		38
head, mated 1-day male		50
head, mated 4-day male		40
head, mated 20-day male		18
salivary gland, larvae L3 wandering		3
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		3
digestive system, 1-day adult		11
digestive system, 4-day adult		8
digestive system, 20-day adult		5
fat body, larvae L3 wandering		248
fat body, white prepupae		2
fat body, pupae P8		2
carcass, larvae L3 wandering		5
carcass, 1-day adult		51
carcass, 4-day adult		52
carcass, 20-day adult		54
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		7
accessory gland, mated 4-day male		2
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of extremely low expression. Peak expression observed at stages throughout the larval period.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		2
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		7
larva L3 12hr old		177
larva L3 puffstage 1-2		179
larva L3 puffstage 3-6		60
larva L3 puffstage 7-9		7
white prepupae new		2
white prepupae 12hr		2
white prepupae 24hr		5
pupae 2d postWPP		8
pupae 3d postWPP		12
pupae 4d postWPP		21
adult male 01day		46
adult male 05day		54
adult male 30day		42
adult female 01day		24
adult female 05day		14
adult female 30day		13
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		2
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		7
larva L3 12hr old		(177)
larva L3 puffstage 1-2		(179)
larva L3 puffstage 3-6		(60)
larva L3 puffstage 7-9		7
white prepupae new		2
white prepupae 12hr		2
white prepupae 24hr		5
pupae 2d postWPP		8
pupae 3d postWPP		12
pupae 4d postWPP		21
adult male 01day		(46)
adult male 05day		(54)
adult male 30day		(42)
adult female 01day		24
adult female 05day		14
adult female 30day		13
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		2
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		7
larva L3 12hr old		(177)
larva L3 puffstage 1-2		(179)
larva L3 puffstage 3-6		60
larva L3 puffstage 7-9		7
white prepupae new		2
white prepupae 12hr		2
white prepupae 24hr		5
pupae 2d postWPP		8
pupae 3d postWPP		12
pupae 4d postWPP		21
adult male 01day		46
adult male 05day		54
adult male 30day		42
adult female 01day		24
adult female 05day		14
adult female 30day		13
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		2
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		7
larva L3 12hr old		177
larva L3 puffstage 1-2		179
larva L3 puffstage 3-6		60
larva L3 puffstage 7-9		7
white prepupae new		2
white prepupae 12hr		2
white prepupae 24hr		5
pupae 2d postWPP		8
pupae 3d postWPP		12
pupae 4d postWPP		21
adult male 01day		46
adult male 05day		54
adult male 30day		42
adult female 01day		24
adult female 05day		14
adult female 30day		13
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		2
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		7
larva L3 12hr old		177
larva L3 puffstage 1-2		179
larva L3 puffstage 3-6		60
larva L3 puffstage 7-9		7
white prepupae new		2
white prepupae 12hr		2
white prepupae 24hr		5
pupae 2d postWPP		8
pupae 3d postWPP		12
pupae 4d postWPP		21
adult male 01day		46
adult male 05day		54
adult male 30day		42
adult female 01day		24
adult female 05day		14
adult female 30day		13
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		2
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		7
larva L3 12hr old		(177)
larva L3 puffstage 1-2		(179)
larva L3 puffstage 3-6		(60)
larva L3 puffstage 7-9		7
white prepupae new		2
white prepupae 12hr		2
white prepupae 24hr		5
pupae 2d postWPP		8
pupae 3d postWPP		12
pupae 4d postWPP		21
adult male 01day		(46)
adult male 05day		(54)
adult male 30day		(42)
adult female 01day		24
adult female 05day		14
adult female 30day		13
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		2
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		7
larva L3 12hr old		(177)
larva L3 puffstage 1-2		(179)
larva L3 puffstage 3-6		60
larva L3 puffstage 7-9		7
white prepupae new		2
white prepupae 12hr		2
white prepupae 24hr		5
pupae 2d postWPP		8
pupae 3d postWPP		12
pupae 4d postWPP		21
adult male 01day		46
adult male 05day		54
adult male 30day		42
adult female 01day		24
adult female 05day		14
adult female 30day		13
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		0
embryo 06-08hr		1
embryo 08-10hr		2
embryo 10-12hr		1
embryo 12-14hr		1
embryo 14-16hr		0
embryo 16-18hr		0
embryo 18-20hr		0
embryo 20-22hr		0
embryo 22-24hr		0
larva L1		0
larva L2		7
larva L3 12hr old		177
larva L3 puffstage 1-2		179
larva L3 puffstage 3-6		60
larva L3 puffstage 7-9		7
white prepupae new		2
white prepupae 12hr		2
white prepupae 24hr		5
pupae 2d postWPP		8
pupae 3d postWPP		12
pupae 4d postWPP		21
adult male 01day		46
adult male 05day		54
adult male 30day		42
adult female 01day		24
adult female 05day		14
adult female 30day		13
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		4
cold shock, 4-day adult		3
heat shock, 4-day adult		98
Cadmium 50 mM 6 hrs, larvae L3		200
Cadmium 50 mM 12 hrs, larvae L3		73
Cadmium 50 mM 48 hrs, 4-day adult		127
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		87
Copper 15 mM 48 hrs, 4-day adult		4
Zinc 5 mM 12 hrs, larvae L3		59
Zinc 4.5 mM 48 hrs, 4-day adult		13
Ethanol 2.5% 3 hrs, larvae L3		11
Ethanol 5% 3 hrs, larvae L3		84
Ethanol 10% 3 hrs, larvae L3		166
Caffeine 1.5 mg/ml 4 hrs, larvae L3		50
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		12
Paraquat 10 mM 48 hrs, 4-day adult		9
Rotenone 2 μg 12 hrs, larvae L3		157
Rotenone 8 μg 12 hrs, larvae L3		241
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		4
cold shock, 4-day adult		3
heat shock, 4-day adult		(98)
Cadmium 50 mM 6 hrs, larvae L3		(200)
Cadmium 50 mM 12 hrs, larvae L3		(73)
Cadmium 50 mM 48 hrs, 4-day adult		(127)
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		(87)
Copper 15 mM 48 hrs, 4-day adult		4
Zinc 5 mM 12 hrs, larvae L3		(59)
Zinc 4.5 mM 48 hrs, 4-day adult		13
Ethanol 2.5% 3 hrs, larvae L3		11
Ethanol 5% 3 hrs, larvae L3		(84)
Ethanol 10% 3 hrs, larvae L3		(166)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(50)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		12
Paraquat 10 mM 48 hrs, 4-day adult		9
Rotenone 2 μg 12 hrs, larvae L3		(157)
Rotenone 8 μg 12 hrs, larvae L3		(241)
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		4
cold shock, 4-day adult		3
heat shock, 4-day adult		98
Cadmium 50 mM 6 hrs, larvae L3		(200)
Cadmium 50 mM 12 hrs, larvae L3		73
Cadmium 50 mM 48 hrs, 4-day adult		(127)
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		87
Copper 15 mM 48 hrs, 4-day adult		4
Zinc 5 mM 12 hrs, larvae L3		59
Zinc 4.5 mM 48 hrs, 4-day adult		13
Ethanol 2.5% 3 hrs, larvae L3		11
Ethanol 5% 3 hrs, larvae L3		84
Ethanol 10% 3 hrs, larvae L3		(166)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		50
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		12
Paraquat 10 mM 48 hrs, 4-day adult		9
Rotenone 2 μg 12 hrs, larvae L3		(157)
Rotenone 8 μg 12 hrs, larvae L3		(241)
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		4
cold shock, 4-day adult		3
heat shock, 4-day adult		98
Cadmium 50 mM 6 hrs, larvae L3		200
Cadmium 50 mM 12 hrs, larvae L3		73
Cadmium 50 mM 48 hrs, 4-day adult		127
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		87
Copper 15 mM 48 hrs, 4-day adult		4
Zinc 5 mM 12 hrs, larvae L3		59
Zinc 4.5 mM 48 hrs, 4-day adult		13
Ethanol 2.5% 3 hrs, larvae L3		11
Ethanol 5% 3 hrs, larvae L3		84
Ethanol 10% 3 hrs, larvae L3		166
Caffeine 1.5 mg/ml 4 hrs, larvae L3		50
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		12
Paraquat 10 mM 48 hrs, 4-day adult		9
Rotenone 2 μg 12 hrs, larvae L3		157
Rotenone 8 μg 12 hrs, larvae L3		241
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		4
cold shock, 4-day adult		3
heat shock, 4-day adult		98
Cadmium 50 mM 6 hrs, larvae L3		200
Cadmium 50 mM 12 hrs, larvae L3		73
Cadmium 50 mM 48 hrs, 4-day adult		127
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		87
Copper 15 mM 48 hrs, 4-day adult		4
Zinc 5 mM 12 hrs, larvae L3		59
Zinc 4.5 mM 48 hrs, 4-day adult		13
Ethanol 2.5% 3 hrs, larvae L3		11
Ethanol 5% 3 hrs, larvae L3		84
Ethanol 10% 3 hrs, larvae L3		166
Caffeine 1.5 mg/ml 4 hrs, larvae L3		50
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		12
Paraquat 10 mM 48 hrs, 4-day adult		9
Rotenone 2 μg 12 hrs, larvae L3		157
Rotenone 8 μg 12 hrs, larvae L3		241
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		4
cold shock, 4-day adult		3
heat shock, 4-day adult		(98)
Cadmium 50 mM 6 hrs, larvae L3		(200)
Cadmium 50 mM 12 hrs, larvae L3		(73)
Cadmium 50 mM 48 hrs, 4-day adult		(127)
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		(87)
Copper 15 mM 48 hrs, 4-day adult		4
Zinc 5 mM 12 hrs, larvae L3		(59)
Zinc 4.5 mM 48 hrs, 4-day adult		13
Ethanol 2.5% 3 hrs, larvae L3		11
Ethanol 5% 3 hrs, larvae L3		(84)
Ethanol 10% 3 hrs, larvae L3		(166)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		(50)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		12
Paraquat 10 mM 48 hrs, 4-day adult		9
Rotenone 2 μg 12 hrs, larvae L3		(157)
Rotenone 8 μg 12 hrs, larvae L3		(241)
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		4
cold shock, 4-day adult		3
heat shock, 4-day adult		98
Cadmium 50 mM 6 hrs, larvae L3		(200)
Cadmium 50 mM 12 hrs, larvae L3		73
Cadmium 50 mM 48 hrs, 4-day adult		127
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		87
Copper 15 mM 48 hrs, 4-day adult		4
Zinc 5 mM 12 hrs, larvae L3		59
Zinc 4.5 mM 48 hrs, 4-day adult		13
Ethanol 2.5% 3 hrs, larvae L3		11
Ethanol 5% 3 hrs, larvae L3		84
Ethanol 10% 3 hrs, larvae L3		(166)
Caffeine 1.5 mg/ml 4 hrs, larvae L3		50
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		12
Paraquat 10 mM 48 hrs, 4-day adult		9
Rotenone 2 μg 12 hrs, larvae L3		(157)
Rotenone 8 μg 12 hrs, larvae L3		(241)
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		4
cold shock, 4-day adult		3
heat shock, 4-day adult		98
Cadmium 50 mM 6 hrs, larvae L3		200
Cadmium 50 mM 12 hrs, larvae L3		73
Cadmium 50 mM 48 hrs, 4-day adult		127
Cadmium 100 mM 48 hrs, 4-day adult		3
Copper 0.5 mM 12 hrs, larvae L3		87
Copper 15 mM 48 hrs, 4-day adult		4
Zinc 5 mM 12 hrs, larvae L3		59
Zinc 4.5 mM 48 hrs, 4-day adult		13
Ethanol 2.5% 3 hrs, larvae L3		11
Ethanol 5% 3 hrs, larvae L3		84
Ethanol 10% 3 hrs, larvae L3		166
Caffeine 1.5 mg/ml 4 hrs, larvae L3		50
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		2
Caffeine 25 mg/ml 48 hrs, 4-day adult		9
Paraquat 5 mM 48 hrs, 4-day adult		12
Paraquat 10 mM 48 hrs, 4-day adult		9
Rotenone 2 μg 12 hrs, larvae L3		157
Rotenone 8 μg 12 hrs, larvae L3		241
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010)

mE2_34_mRNA_expression_cluster_04

External Data & Images

Linkouts

BDGP expression data

•

LP09811

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0025620

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG13360-RA

FlyExpress - Embryonic expression images (BDGP data)

•

Show all FlyExpress processed images for CG13360

Stages(s) 4-6

Stages(s) 11-12

Stages(s) 13-16

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

viable, with Scer\GAL4^pnr-MD237

CG13360^GD7994

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of CG13360	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 2 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG13360	Class	Mutagen	Stocks	Known lesion
CG13360^GD7994		in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG13360^KK106524		in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes

Aneuploid Aberrations

Disrupted in

Df(1)Exel6223

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD7994}

P{KK106524}

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 1 unique term )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 1 term )

Molecular Function

CV term

Evidence

References

transferase activity, transferring phosphorus-containing groups

inferred from electronic annotation with InterPro:IPR011009

(FlyBase Curators et al., 2004-)

Biological Process ( 0 terms)

Cellular Component ( 0 terms)

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG13360 allele

Gene

References

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0025620

Orthologs

OrthoDB Orthologs (16) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG6JHD1H

Dipteran inclusive ortholog search

No orthologs identified

Insect inclusive ortholog search

EOG6V6XC2

Arthropod inclusive ortholog search

No orthologs identified

Metazoa inclusive ortholog search

EOG6HMX3P

Orthologs in Drosophila Species (EOG6JHD1H)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA12229

Drosophila persimilis

Dper\GL26872

Drosophila willistoni

Dwil\GK19796

Drosophila virilis

Dvir\GJ19105

Drosophila mojavensis

Dmoj\GI10995

Drosophila grimshawi

Dgri\GH17854

Orthologs in non-Drosophila Dipterans (None identified)

No non-Drosophilid orthologies identified

Orthologs in non-Dipteran Insects (EOG6V6XC2)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Camponotus floridanus

Florida carpenter ant

Cflo\CFLO18281

Pediculus humanus

Human body louse

Phum\PHUM617530

Orthologs in non-Insect Arthropods (None identified)

No non-Insect Arthropod orthologies identified

Orthologs in non-Arthropod Metazoa (EOG6HMX3P)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Caenorhabditis elegans

Nematode

Cele\E02C12.11

Caenorhabditis elegans

Nematode

Cele\E02C12.6

Human Orthologs (0)

Gene

OMIM

HGNC

AAA Orthologs (11) based on analysis using Dmel annotation version 4.3

Organism

Gene

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA12229

Drosophila persimilis

Dper\GL26872

Drosophila willistoni

Dwil\GK19796

Drosophila virilis

Dvir\GJ19105

Drosophila mojavensis

Dmoj\GI10995

Drosophila grimshawi

Dgri\GH17854

Stocks & Reagents

Stocks Listed in FlyBase ( 2 )

VDRC

v100997

P{KK106524}VIE-260B

v23878

w¹¹¹⁸ P{GD7994}v23878

Genomic Clones ( 1 )

BACR19J01

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 15 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

LP09811

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0025620

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

31025

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_130503

RefSeq (Proteins)

•

NP_569859

DDBJ / EMBL / GenBank

•

Entrez Gene - A searchable database of RefSeq genes.

•

31025

UniProtKB/TrEMBL

•

O77436

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

CHK kinase-like (IPR015897)

Protein of unknown function DUF227 (IPR004119)

Protein kinase-like domain (IPR011009)

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

•

LP09811

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0025620

DRSC - Results from RNAi screens.

•

FBgn0025620

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0025620

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG13360-RA

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0025620

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

31025

modMine - Data generated by the modENCODE project.

•

FBgn0025620

Synonyms & Secondary IDs ( 2 )

Reported As

Symbol Synonym

CG13360

(Lebo et al., 2009, Keleman et al., 2009.8.5, Ellis and Carney, 2010, Kim et al., 2010)

EG:34F3.5

(Benos et al., 2001, )

Name Synonym

Secondary FlyBase IDs

References ( 14 )

Research paper

Ellis and Carney, 2010, BMC Genomics 11: 558: Mating alters gene expression patterns in Drosophila melanogaster male heads. [FBrf0212156]
Kim et al., 2010, Exp. Gerontol. 45(7-8): 611--620: Gene expression profiling implicates OXPHOS complexes in lifespan extension of flies over-expressing a small mitochondrial chaperone, Hsp22. [FBrf0210880]
Lebo et al., 2009, BMC Genomics 10: 80: Somatic, germline and sex hierarchy regulated gene expression during Drosophila metamorphosis. [FBrf0207472]
Benos et al., 2001, Genome Res. 11(5): 710--730: From First Base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. [FBrf0135823]

Supplementary material

The modENCODE Consortium, 2010, Science 330(6012):: DataS14: Gene co-expression clusters. [FBrf0213979]
Mummery-Widmer et al., 2009, Nature 458(7241):: Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]

Personal communication to FlyBase

Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.: Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file): Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
Benos, 2000.12.13, FlyBase error report on Wed Dec 13 14:35:56 2000.: FlyBase error report on Wed Dec 13 14:35:56 2000. [FBrf0133222]

Website

Fisher et al., 2012, BDGP insitu homepage: BDGP insitu homepage [FBrf0219073]