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Gene Dmel\santa-maria

General Information
Symbol	Dmel\santa-maria	Species	D. melanogaster
Name	scavenger receptor acting in neural tissue and majority of rhodopsin is absent	Annotation symbol	CG12789
Feature type	protein_coding_gene	FlyBase ID	FBgn0025697
Gene Model Status	Current	Stock availability	5 publicly available
Also Known As	santa maria
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	28A1-28A1	Sequence location	2L:7,445,355..7,451,167 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene scavenger receptor acting in neural tissue and majority of rhodopsin is absent is referred to in FlyBase by the symbol Dmel\santa-maria (CG12789, FBgn0025697). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: scavenger receptor activity. There is experimental evidence that it is involved in the biological process: carotenoid metabolic process; phototransduction; rhodopsin biosynthetic process; autophagic cell death; thermotaxis; salivary gland cell autophagic cell death. 7 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: CD36 antigen. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of extremely low expression. Peak expression observed during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, larval fat body. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval/adult midgut, adult heart, adult fat body, adult spermathecae, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1635522_a_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of santa-maria. Gene sequence location is 2L:7445355..7451167.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 28A1-28A1   Limits computationally determined from genome sequence between P{PZ}cuc10607 and P{EP}EP2419EP2419&P{EP}EP575
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\santa-maria for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.45
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) santa-maria-RA FBtr0079464  NM_164752   2225   563
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein santa-maria-PA   FBpp0079088   62.9   563   5.35     NP_723277   AAF52518
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • CD36 antigen (IPR002159)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA141317   AA141318   AE014134 AAF52518   AI297403   AI403553   AW940886   AY051582 AAK93006   BI568771   BI576631   BT100097   CO183393   CO193997   CO294023   CO295476   CO329907   CO340701   EC067405   EC075438   EC226361   EC235908   EC260360   GH946669   GH967303   GH967712   GH975157   GH976831   GH980624
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VM10 Q961H6
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 9 -- 10   amnioserosa   (Fisher et al., 2012) embryonic stage 11 -- 12   amnioserosa   (Fisher et al., 2012) embryonic stage 13 -- 16   Bolwig organ   (Fisher et al., 2012) embryonic central brain neuron   (Fisher et al., 2012) embryonic head epidermis   (Fisher et al., 2012) embryonic head sensory system   (Fisher et al., 2012) yolk nucleus   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, larval fat body. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval/adult midgut, adult heart, adult fat body, adult spermathecae, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    337.25 Larval Midgut    238.1 Larval Hindgut    8.8 Larval Malpighian Tubules    36.7 Larval Fat Body    2301.7 Larval Salivary Gland    11.4 Larval Trachea    23.5 Larval Carcass    33.625 Adult Head    833.7 Adult Eye    1593.65 Adult Brain    525.1 Adult Thoracic-Abdominal Ganglion    677.6 Adult Crop    17.3 Adult Midgut    296.1 Adult Hindgut    31.8 Adult Malpighian Tubules    11.3 Adult Fat Body    391.3 Adult Salivary Gland    14.1 Adult Heart    334.45 Adult VirginFemale Spermatheca    369.2 Adult InseminatedFemale Spermatheca    375.9 Adult Ovary    5.9 Adult Testis    59.2 Adult Male Accessory Gland    23 Adult Carcass    291.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    337.25 Larval Midgut    238.1 Larval Hindgut    8.8 Larval Malpighian Tubules    36.7 Larval Fat Body  (2301.7) Larval Salivary Gland    11.4 Larval Trachea    23.5 Larval Carcass    33.625 Adult Head  (833.7) Adult Eye  (1593.65) Adult Brain  525.1 Adult Thoracic-Abdominal Ganglion  (677.6) Adult Crop    17.3 Adult Midgut    296.1 Adult Hindgut    31.8 Adult Malpighian Tubules    11.3 Adult Fat Body    391.3 Adult Salivary Gland    14.1 Adult Heart    334.45 Adult VirginFemale Spermatheca    369.2 Adult InseminatedFemale Spermatheca    375.9 Adult Ovary    5.9 Adult Testis    59.2 Adult Male Accessory Gland    23 Adult Carcass    291.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    337.25 Larval Midgut    238.1 Larval Hindgut    8.8 Larval Malpighian Tubules    36.7 Larval Fat Body  (2301.7) Larval Salivary Gland    11.4 Larval Trachea    23.5 Larval Carcass    33.625 Adult Head    833.7 Adult Eye  (1593.65) Adult Brain    525.1 Adult Thoracic-Abdominal Ganglion    677.6 Adult Crop    17.3 Adult Midgut    296.1 Adult Hindgut    31.8 Adult Malpighian Tubules    11.3 Adult Fat Body    391.3 Adult Salivary Gland    14.1 Adult Heart    334.45 Adult VirginFemale Spermatheca    369.2 Adult InseminatedFemale Spermatheca    375.9 Adult Ovary    5.9 Adult Testis    59.2 Adult Male Accessory Gland    23 Adult Carcass    291.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    337.25 Larval Midgut    238.1 Larval Hindgut    8.8 Larval Malpighian Tubules    36.7 Larval Fat Body    2301.7 Larval Salivary Gland    11.4 Larval Trachea    23.5 Larval Carcass    33.625 Adult Head    833.7 Adult Eye    1593.65 Adult Brain    525.1 Adult Thoracic-Abdominal Ganglion    677.6 Adult Crop    17.3 Adult Midgut    296.1 Adult Hindgut    31.8 Adult Malpighian Tubules    11.3 Adult Fat Body    391.3 Adult Salivary Gland    14.1 Adult Heart    334.45 Adult VirginFemale Spermatheca    369.2 Adult InseminatedFemale Spermatheca    375.9 Adult Ovary    5.9 Adult Testis    59.2 Adult Male Accessory Gland    23 Adult Carcass    291.7 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    337.25 Larval Midgut    238.1 Larval Hindgut    8.8 Larval Malpighian Tubules    36.7 Larval Fat Body    2301.7 Larval Salivary Gland    11.4 Larval Trachea    23.5 Larval Carcass    33.625 Adult Head    833.7 Adult Eye    1593.65 Adult Brain    525.1 Adult Thoracic-Abdominal Ganglion    677.6 Adult Crop    17.3 Adult Midgut    296.1 Adult Hindgut    31.8 Adult Malpighian Tubules    11.3 Adult Fat Body    391.3 Adult Salivary Gland    14.1 Adult Heart    334.45 Adult VirginFemale Spermatheca    369.2 Adult InseminatedFemale Spermatheca    375.9 Adult Ovary    5.9 Adult Testis    59.2 Adult Male Accessory Gland    23 Adult Carcass    291.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    337.25 Larval Midgut    238.1 Larval Hindgut    8.8 Larval Malpighian Tubules    36.7 Larval Fat Body  (2301.7) Larval Salivary Gland    11.4 Larval Trachea    23.5 Larval Carcass    33.625 Adult Head  (833.7) Adult Eye  (1593.65) Adult Brain  525.1 Adult Thoracic-Abdominal Ganglion  677.6 Adult Crop    17.3 Adult Midgut    296.1 Adult Hindgut    31.8 Adult Malpighian Tubules    11.3 Adult Fat Body    391.3 Adult Salivary Gland    14.1 Adult Heart    334.45 Adult VirginFemale Spermatheca    369.2 Adult InseminatedFemale Spermatheca    375.9 Adult Ovary    5.9 Adult Testis    59.2 Adult Male Accessory Gland    23 Adult Carcass    291.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    337.25 Larval Midgut    238.1 Larval Hindgut    8.8 Larval Malpighian Tubules    36.7 Larval Fat Body  (2301.7) Larval Salivary Gland    11.4 Larval Trachea    23.5 Larval Carcass    33.625 Adult Head    833.7 Adult Eye  1593.65 Adult Brain    525.1 Adult Thoracic-Abdominal Ganglion    677.6 Adult Crop    17.3 Adult Midgut    296.1 Adult Hindgut    31.8 Adult Malpighian Tubules    11.3 Adult Fat Body    391.3 Adult Salivary Gland    14.1 Adult Heart    334.45 Adult VirginFemale Spermatheca    369.2 Adult InseminatedFemale Spermatheca    375.9 Adult Ovary    5.9 Adult Testis    59.2 Adult Male Accessory Gland    23 Adult Carcass    291.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    337.25 Larval Midgut    238.1 Larval Hindgut    8.8 Larval Malpighian Tubules    36.7 Larval Fat Body    2301.7 Larval Salivary Gland    11.4 Larval Trachea    23.5 Larval Carcass    33.625 Adult Head    833.7 Adult Eye    1593.65 Adult Brain    525.1 Adult Thoracic-Abdominal Ganglion    677.6 Adult Crop    17.3 Adult Midgut    296.1 Adult Hindgut    31.8 Adult Malpighian Tubules    11.3 Adult Fat Body    391.3 Adult Salivary Gland    14.1 Adult Heart    334.45 Adult VirginFemale Spermatheca    369.2 Adult InseminatedFemale Spermatheca    375.9 Adult Ovary    5.9 Adult Testis    59.2 Adult Male Accessory Gland    23 Adult Carcass    291.7 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    833.7   NA  Eye    1593.65   NA  Brain    525.1   337.25  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    677.6   NA  Crop    17.3   238.1  Midgut    296.1   8.8  Hindgut    31.8   36.7  Malpighian Tubules    no informative data   2301.7  Fat Body    391.3   no informative data  Salivary Gland    no informative data   NA  Heart    334.45   no informative data  Trachea    NA   NA  VirginFemale Spermatheca    369.2   NA  InseminatedFemale Spermatheca    375.9   NA  Ovary    5.9   NA  Testis    59.2   NA  Male Accessory Gland    23   33.625  Carcass    291.7 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    11 central nervous system, pupae P8    17 head, virgin 1-day female    30 head, virgin 4-day female    31 head, virgin 20-day female    35 head, mated 1-day female    28 head, mated 4-day female    24 head, mated 20-day female    27 head, mated 1-day male    43 head, mated 4-day male    42 head, mated 20-day male    51 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    43 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    7 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    6 fat body, white prepupae    624 fat body, pupae P8    41 carcass, larvae L3 wandering    6 carcass, 1-day adult    7 carcass, 4-day adult    6 carcass, 20-day adult    10 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    11 central nervous system, pupae P8    17 head, virgin 1-day female  (30) head, virgin 4-day female  (31) head, virgin 20-day female  (35) head, mated 1-day female  (28) head, mated 4-day female    24 head, mated 20-day female  (27) head, mated 1-day male  (43) head, mated 4-day male  (42) head, mated 20-day male  (51) salivary gland, larvae L3 wandering    2 salivary gland, white prepupae  (43) digestive system, larvae L3 wandering    11 digestive system, 1-day adult    7 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    6 fat body, white prepupae  (624) fat body, pupae P8  (41) carcass, larvae L3 wandering    6 carcass, 1-day adult    7 carcass, 4-day adult    6 carcass, 20-day adult    10 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    11 central nervous system, pupae P8    17 head, virgin 1-day female    30 head, virgin 4-day female    31 head, virgin 20-day female    35 head, mated 1-day female    28 head, mated 4-day female    24 head, mated 20-day female    27 head, mated 1-day male    43 head, mated 4-day male    42 head, mated 20-day male    51 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    43 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    7 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    6 fat body, white prepupae  (624) fat body, pupae P8    41 carcass, larvae L3 wandering    6 carcass, 1-day adult    7 carcass, 4-day adult    6 carcass, 20-day adult    10 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    11 central nervous system, pupae P8    17 head, virgin 1-day female    30 head, virgin 4-day female    31 head, virgin 20-day female    35 head, mated 1-day female    28 head, mated 4-day female    24 head, mated 20-day female    27 head, mated 1-day male    43 head, mated 4-day male    42 head, mated 20-day male    51 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    43 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    7 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    6 fat body, white prepupae    624 fat body, pupae P8    41 carcass, larvae L3 wandering    6 carcass, 1-day adult    7 carcass, 4-day adult    6 carcass, 20-day adult    10 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    11 central nervous system, pupae P8    17 head, virgin 1-day female    30 head, virgin 4-day female    31 head, virgin 20-day female    35 head, mated 1-day female    28 head, mated 4-day female    24 head, mated 20-day female    27 head, mated 1-day male    43 head, mated 4-day male    42 head, mated 20-day male    51 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    43 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    7 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    6 fat body, white prepupae    624 fat body, pupae P8    41 carcass, larvae L3 wandering    6 carcass, 1-day adult    7 carcass, 4-day adult    6 carcass, 20-day adult    10 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    11 central nervous system, pupae P8    17 head, virgin 1-day female  30 head, virgin 4-day female  31 head, virgin 20-day female  (35) head, mated 1-day female  28 head, mated 4-day female    24 head, mated 20-day female  27 head, mated 1-day male  (43) head, mated 4-day male  (42) head, mated 20-day male  (51) salivary gland, larvae L3 wandering    2 salivary gland, white prepupae  (43) digestive system, larvae L3 wandering    11 digestive system, 1-day adult    7 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    6 fat body, white prepupae  (624) fat body, pupae P8  (41) carcass, larvae L3 wandering    6 carcass, 1-day adult    7 carcass, 4-day adult    6 carcass, 20-day adult    10 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    11 central nervous system, pupae P8    17 head, virgin 1-day female    30 head, virgin 4-day female    31 head, virgin 20-day female    35 head, mated 1-day female    28 head, mated 4-day female    24 head, mated 20-day female    27 head, mated 1-day male    43 head, mated 4-day male    42 head, mated 20-day male    51 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    43 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    7 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    6 fat body, white prepupae  (624) fat body, pupae P8    41 carcass, larvae L3 wandering    6 carcass, 1-day adult    7 carcass, 4-day adult    6 carcass, 20-day adult    10 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1 central nervous system, larvae L3    11 central nervous system, pupae P8    17 head, virgin 1-day female    30 head, virgin 4-day female    31 head, virgin 20-day female    35 head, mated 1-day female    28 head, mated 4-day female    24 head, mated 20-day female    27 head, mated 1-day male    43 head, mated 4-day male    42 head, mated 20-day male    51 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    43 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    7 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    6 fat body, white prepupae    624 fat body, pupae P8    41 carcass, larvae L3 wandering    6 carcass, 1-day adult    7 carcass, 4-day adult    6 carcass, 20-day adult    10 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    2 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of extremely low expression. Peak expression observed during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    3 embryo 10-12hr    6 embryo 12-14hr    10 embryo 14-16hr    6 embryo 16-18hr    5 embryo 18-20hr    3 embryo 20-22hr    4 embryo 22-24hr    4 larva L1    4 larva L2    3 larva L3 12hr old    1 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9    71 white prepupae new    162 white prepupae 12hr    40 white prepupae 24hr    22 pupae 2d postWPP    18 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    15 adult male 05day    12 adult male 30day    8 adult female 01day    6 adult female 05day    4 adult female 30day    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    3 embryo 10-12hr    6 embryo 12-14hr    10 embryo 14-16hr    6 embryo 16-18hr    5 embryo 18-20hr    3 embryo 20-22hr    4 embryo 22-24hr    4 larva L1    4 larva L2    3 larva L3 12hr old    1 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9  (71) white prepupae new  (162) white prepupae 12hr  (40) white prepupae 24hr    22 pupae 2d postWPP    18 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    15 adult male 05day    12 adult male 30day    8 adult female 01day    6 adult female 05day    4 adult female 30day    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    3 embryo 10-12hr    6 embryo 12-14hr    10 embryo 14-16hr    6 embryo 16-18hr    5 embryo 18-20hr    3 embryo 20-22hr    4 embryo 22-24hr    4 larva L1    4 larva L2    3 larva L3 12hr old    1 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9    71 white prepupae new  (162) white prepupae 12hr    40 white prepupae 24hr    22 pupae 2d postWPP    18 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    15 adult male 05day    12 adult male 30day    8 adult female 01day    6 adult female 05day    4 adult female 30day    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    3 embryo 10-12hr    6 embryo 12-14hr    10 embryo 14-16hr    6 embryo 16-18hr    5 embryo 18-20hr    3 embryo 20-22hr    4 embryo 22-24hr    4 larva L1    4 larva L2    3 larva L3 12hr old    1 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9    71 white prepupae new    162 white prepupae 12hr    40 white prepupae 24hr    22 pupae 2d postWPP    18 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    15 adult male 05day    12 adult male 30day    8 adult female 01day    6 adult female 05day    4 adult female 30day    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    3 embryo 10-12hr    6 embryo 12-14hr    10 embryo 14-16hr    6 embryo 16-18hr    5 embryo 18-20hr    3 embryo 20-22hr    4 embryo 22-24hr    4 larva L1    4 larva L2    3 larva L3 12hr old    1 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9    71 white prepupae new    162 white prepupae 12hr    40 white prepupae 24hr    22 pupae 2d postWPP    18 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    15 adult male 05day    12 adult male 30day    8 adult female 01day    6 adult female 05day    4 adult female 30day    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    3 embryo 10-12hr    6 embryo 12-14hr    10 embryo 14-16hr    6 embryo 16-18hr    5 embryo 18-20hr    3 embryo 20-22hr    4 embryo 22-24hr    4 larva L1    4 larva L2    3 larva L3 12hr old    1 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9  (71) white prepupae new  (162) white prepupae 12hr  (40) white prepupae 24hr    22 pupae 2d postWPP    18 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    15 adult male 05day    12 adult male 30day    8 adult female 01day    6 adult female 05day    4 adult female 30day    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    3 embryo 10-12hr    6 embryo 12-14hr    10 embryo 14-16hr    6 embryo 16-18hr    5 embryo 18-20hr    3 embryo 20-22hr    4 embryo 22-24hr    4 larva L1    4 larva L2    3 larva L3 12hr old    1 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9    71 white prepupae new  (162) white prepupae 12hr    40 white prepupae 24hr    22 pupae 2d postWPP    18 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    15 adult male 05day    12 adult male 30day    8 adult female 01day    6 adult female 05day    4 adult female 30day    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    1 embryo 06-08hr    2 embryo 08-10hr    3 embryo 10-12hr    6 embryo 12-14hr    10 embryo 14-16hr    6 embryo 16-18hr    5 embryo 18-20hr    3 embryo 20-22hr    4 embryo 22-24hr    4 larva L1    4 larva L2    3 larva L3 12hr old    1 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    10 larva L3 puffstage 7-9    71 white prepupae new    162 white prepupae 12hr    40 white prepupae 24hr    22 pupae 2d postWPP    18 pupae 3d postWPP    10 pupae 4d postWPP    7 adult male 01day    15 adult male 05day    12 adult male 30day    8 adult female 01day    6 adult female 05day    4 adult female 30day    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    35 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2  (35) tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    35 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    35 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    35 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2  (35) tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    35 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    5 embryonic Kc167    0 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    3 CNS ML-DmBG2-c2    35 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    12 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    12 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3  (28) Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    12 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    12 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    12 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    12 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3  28 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    12 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    12 heat shock, 4-day adult    2 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    3 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    10 Ethanol 2.5% 3 hrs, larvae L3    3 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    3 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    6 Paraquat 5 mM 48 hrs, 4-day adult    6 Paraquat 10 mM 48 hrs, 4-day adult    7 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_25 mE1_20_mRNA_expression_cluster_14
External Data & Images
Linkouts	BDGP expression data • GH23019 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0025697 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG12789-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for santa-maria Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable santa-maria1 viable, with Scer\GAL4pnr-MD237 santa-mariaGD969 Other Phenotypes Allele auditory perception defective | adult stage santa-maria1 neurophysiology defective santa-maria1 neurophysiology defective | adult stage santa-maria1 thermotaxis behavior defective | larval stage santa-maria1 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of santa-maria Class Mutagen Stocks Known lesion santa-maria1 ethyl methanesulfonate 2 Yes
Alleles Carried on Transgenic Constructs ( 6 )
For All Alleles Carried on Transgenic Constructs Show
Allele of santa-maria Class Mutagen Stocks Known lesion santa-mariaGD969 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes santa-mariaHMS01405 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes santa-mariaJF03227 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes santa-mariaScer\UAS.cWa in vitro construct - regulatory fusion 1 Yes santa-mariahs.PW in vitro construct - regulatory fusion 0 Yes santa-mariaNIG.12789R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)ED479 (Wang et al., 2007) Df(2L)Exel7031 (Ryder, 2004.4.26, Wang et al., 2007)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD969} NA P{NIG.12789R} NA P{TRiP.HMS01405} NA P{TRiP.JF03227} NA P{UAS-santa-maria.W} NA heat-shock construct P{hs-santa-maria.W} NA GAL4 construct P{santa-maria-GAL4.W} No
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 11 unique terms )
Terms Based on Experimental Evidence ( 6 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
autophagic cell death inferred from expression pattern (Gorski et al., 2003) carotenoid metabolic process inferred from mutant phenotype (Wang et al., 2007) phototransduction inferred from mutant phenotype (Wang et al., 2007) rhodopsin biosynthetic process inferred from mutant phenotype (Wang et al., 2007) salivary gland cell autophagic cell death inferred from expression pattern (Gorski et al., 2003) thermotaxis inferred from mutant phenotype (Shen et al., 2011)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term Evidence References
scavenger receptor activity inferred from sequence or structural similarity with EMBL:U37799 (FlyBase, 1992-) non-traceable author statement (Lemaitre, 2000.12.20)
Biological Process
CV term Evidence References
cell adhesion inferred from electronic annotation with InterPro:IPR002159 (FlyBase Curators et al., 2004-) defense response inferred from sequence or structural similarity with EMBL:U37799 (FlyBase, 1992-) non-traceable author statement (Lemaitre, 2000.12.20)
Cellular Component
CV term Evidence References
integral to plasma membrane non-traceable author statement (Lemaitre, 2000.12.20) membrane inferred from electronic annotation with InterPro:IPR002159 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
santa-maria - CG3793 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - CG8560 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) santa-maria - Cypl anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Hk experimental knowledge based (Guruharsha et al., 2011) santa-maria - Hmgs anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Hsc70-1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Oscillin anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - PSR anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Pglym78 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Prosα2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Prosα4 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Prosα6 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Prosα7 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Prosβ1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Prosβ3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Prosβ4 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Prosβ6 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Prosβ7 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - RpS21 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Rpb8 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - Tango2 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) santa-maria - futsch anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - igl anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - isoQC anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) santa-maria - nwk experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) santa-maria - ref(2)P anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions santa-maria allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 60169 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0025697 DroID - A comprehensive database of gene and protein interactions. • FBgn0025697 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34024
Orthologs
OrthoDB Orthologs (50) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6H72X9 Dipteran inclusive ortholog search EOG6HHP9R Insect inclusive ortholog search EOG6TTFD6 Arthropod inclusive ortholog search EOG634TN8 Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6H72X9)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\santa-maria     Drosophila simulans   Dsim\GD22494 Y   Drosophila sechellia   Dsec\GM13558 Y   Drosophila erecta   Dere\GG23532 Y   Drosophila yakuba   Dyak\GE18358 Y   Drosophila ananassae   Dana\GF14024 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA25196 Y   Drosophila persimilis   Dper\GL25933 Y   Drosophila willistoni   Dwil\GK24723 Y   Drosophila virilis   Dvir\GJ17608 Y   Drosophila mojavensis   Dmoj\GI17783 Y   Drosophila grimshawi   Dgri\GH13144 Y
Orthologs in non-Drosophila Dipterans (EOG6HHP9R)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL008370 Y Anopheles gambiae Malaria mosquito  Agam\SCRB17 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ017039 Y
Orthologs in non-Dipteran Insects (EOG6TTFD6)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB53014 Y Apis mellifera Western honey bee  Amel\GB44045 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG007445 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG011340 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH16891 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH18246 Y Atta cephalotes Leafcutter ant  Acep\ACEP19494 Y Atta cephalotes Leafcutter ant  Acep\ACEP11359 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO16547 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO13451 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL22535 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL16324 Y Linepithema humile Argentine ant  Lhum\LH17139 Y Linepithema humile Argentine ant  Lhum\LH26186 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB19375 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB11199 Y Solenopsis invicta Red fire ant  Sinv\SINV16884 Y Solenopsis invicta Red fire ant  Sinv\SINV14639 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI009159 Y Bombyx mori Silkmoth  Bmor\BGIBMGA010476 Y Bombyx mori Silkmoth  Bmor\BGIBMGA010477 Y Pediculus humanus Human body louse  Phum\PHUM351630 Y Pediculus humanus Human body louse  Phum\PHUM351640 Y Tribolium castaneum Red flour beetle  Tcas\crq Y Tribolium castaneum Red flour beetle  Tcas\TC012757 Y Tribolium castaneum Red flour beetle  Tcas\TC012758 Y Tribolium castaneum Red flour beetle  Tcas\TC012756 Y
Orthologs in non-Insect Arthropods (EOG634TN8)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\COI Y Daphnia pulex Water flea  Dpux\JGI_V11_307609 Y Daphnia pulex Water flea  Dpux\rbcL Y Daphnia pulex Water flea  Dpux\rbcL Y Daphnia pulex Water flea  Dpux\nad5 Y Ixodes scapularis Deer tick  Isca\ISCW010934 Y Ixodes scapularis Deer tick  Isca\ISCW003371 Y Ixodes scapularis Deer tick  Isca\ISCW023721 Y
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD22494 Drosophila sechellia Dsec\GM13558 Drosophila erecta Dere\GG23532 Drosophila yakuba Dyak\GE18358 Drosophila ananassae Dana\GF14024 Drosophila pseudoobscura pseudoobscura Dpse\GA25196 Drosophila persimilis Dper\GL25933 Drosophila willistoni Dwil\GK24723 Drosophila virilis Dvir\GJ17608 Drosophila mojavensis Dmoj\GI17783 Drosophila grimshawi Dgri\GH13144
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	24520 w*; santa-maria1 29550 y1 v1; P{TRiP.JF03227}attP2 24519 w*; santa-maria1; P{UAS-santa-maria.W}3 34995 y1 sc* v1; P{TRiP.HMS01405}attP2/TM3, Sb1
VDRC	v33153 w1118; P{GD969}v33153
Genomic Clones ( 1 )
	BACR30I17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 24 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH23019 RH25769
Other clones	DPiM_GH23019
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LP11694 RH33230 RH36869
Other clones	76340 77008 147311 191576 CK01577 EC25637 EC37240 EC260360 EK205516 EK209939 EK294136 EP11149 RP004217645 RP004239904 RP004309779 RP004348864 RP004465076 RP004469218
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0025697 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34024
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: CG12789 santa-maria (Wang et al., 2007)
Source for database merge of	Source for merge of: BEST:CK01577 CG12789 (Bayraktaroglu, 2000.11.2)
Additional comments
Other Comments
	The santa-maria protein functions in neurons and glia. (Wang et al., 2007) dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology. (Kiger et al., 2003) Identification: cDNA screen for secreted and transmembrane proteins expressed during embryogenesis. (Kopczynski et al., 1998)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_164752 RefSeq (Proteins) • NP_723277 DDBJ / EMBL / GenBank • AA141317 AA141318 AAF52518 AAK93006 AAN10632 AI403553 AW940886 AY051582 Entrez Gene - A searchable database of RefSeq genes. • 34024 UniProtKB/TrEMBL • Q9VM10 Q961H6
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • CD36 antigen (IPR002159) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GH23019
Linkouts
	BioGRID - A database of protein and genetic interactions • 60169 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0025697 DroID - A comprehensive database of gene and protein interactions. • FBgn0025697 DRSC - Results from RNAi screens. • FBgn0025697 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0025697 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG12789-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0025697 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 34024 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 34024 modMine - Data generated by the modENCODE project. • FBgn0025697
Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym	BEST:CK01577 (Giot et al., 2003, ) CG12789 (Wang et al., 2007, Cao et al., 2007, Nichols and Vogt, 2008, Perkins et al., 2009, Wertheim et al., 2005, Ni et al., 2011.7.19, Kertesz et al., 2007) CK01577 (Kopczynski et al., 1998) santa-maria (Japanese National Institute of Genetics, 2012.5.21, Senthilan et al., 2012) santa maria (Wang et al., 2007, Halme et al., 2010) Santa Maria (Nichols and Vogt, 2008)
Name Synonym	CG12789   santa-maria (Rynes et al., 2012) SANTA-MARIA (Benton et al., 2007) santa maria (Vogt et al., 2009, Shen et al., 2011) scavenger receptor acting in neural tissue and majority of rhodopsin is absent (Wang et al., 2007)
Secondary FlyBase IDs
	FBgn0031915
References ( 36 )
Generate a list of	All references relating to this gene ( 36 )
List References by type	Research paper  ( 17 ) Supplementary material  ( 6 ) Personal communication to FlyBase  ( 9 ) FlyBase analysis  ( 1 ) Stock list  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 6 )
	Rynes et al., 2012, Mol. Cell. Biol. 32(19): 3949--3962 Activating transcription factor 3 regulates immune and metabolic homeostasis. [FBrf0219385] Senthilan et al., 2012, Cell 150(5): 1042--1054 Drosophila auditory organ genes and genetic hearing defects. [FBrf0219321] Weber et al., 2012, PLoS ONE 7(4): e34745 Genome-Wide Association Analysis of Oxidative Stress Resistance in Drosophila melanogaster. [FBrf0218073] Baycin-Hizal et al., 2011, J. Proteome Res. 10(6): 2777--2784 GlycoFly: A Database of Drosophila N-linked Glycoproteins Identified Using SPEG-MS Techniques. [FBrf0213834] Herboso et al., 2011, Int. J. Dev. Biol. 55(6): 603--611 Expression of the Scavenger Receptor Class B type I (SR-BI) family in Drosophila melanogaster. [FBrf0216272] Shen et al., 2011, Science 331(6022): 1333--1336 Function of rhodopsin in temperature discrimination in Drosophila. [FBrf0213227] Show all research papers ...