A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\Smox

General Information
SymbolDmel\SmoxSpeciesD. melanogaster
NameSmad on XAnnotation symbolCG2262
Feature typeprotein_coding_geneFlyBase IDFBgn0025800
Gene Model StatusCurrent Stock availability 4 publicly available
Also Known AsdSmad2, SMAD2, Sad
Genomic Location
Chromosome (arm)XRecombination map
Cytogenetic map7D14-7D15Sequence locationX:8,032,424..8,036,301 [-]

Genomic Maps

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modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene Smad on X is referred to in FlyBase by the symbol Dmel\Smox (CG2262, FBgn0025800). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding. There is experimental evidence that it is involved in the biological process: axon guidance; neuron development; regulation of mitotic cell cycle; mushroom body development; imaginal disc-derived wing morphogenesis. 16 alleles are reported. The phenotypes of these alleles are annotated with: medulla neuropil; lamina anlage glial cell; medulla neuropil glial cell; larval inner optic anlage; larval outer optic anlage; chaeta; wing; lamina. It has one annotated transcript and one annotated polypeptide. Protein features are: Dwarfin; MAD homology 1, Dwarfin-type; MAD homology, MH1; SMAD domain, Dwarfin-type; SMAD domain-like; SMAD/FHA domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-06 and 12-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult spermathecae. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult crop, larval midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1629290_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Smox. Gene sequence location is X:8032424..8036301.

External Summaries
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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2012_01
Controlled Vocabulary Terms
Sequence features
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
7D14-7D15  
Limits computationally determined from genome sequence between P{EP}Ubc-E2HEP1303 and P{EP}CG1583EP1516&P{EP}CG1583EP325  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
7D-7D  
(determined by in situ hybridisation)  
7D10-7D12  
7D-7D  
(determined by in situ hybridisation)  
7D7-7D16  
7D-7D  
7D-7D  
7D-7D  
(determined by in situ hybridisation)  
7D7-7D16  
7D6-7D17  
Mapped to 7D6--7D17 using grids of P1 clones.  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\Smox for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0300914 FBtr0071192 FBtr0071191 FBtr0071190 FBpp0290136 FBpp0071140 FBpp0071139 FBpp0071138 FBti0071933 FBti0011892 FBti0015661
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0071192
  3160
  486
Additional Transcript Data & Comments
Reported size (kB)
~4.5 (northern blot)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0071140  
53.7  
486  
7.63  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
Activated babo protein phosphorylates the C-terminal SSXS motif of Smox protein. Med and Smox proteins form some complexes in the absence of activated babo protein, but the level of complex formation increases significantly in the presence of the activated babo protein. Smox protein also interacts transiently with put-:-babo protein complexes.
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
SMAD/FHA domain (IPR008984)
MAD homology, MH1 (IPR013019)
Dwarfin (IPR013790)
SMAD domain-like (IPR017855)
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:reference states 0-2 hr AEL
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view Smox-RA CG17982-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0025800


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0025800
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-06 and 12-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0025800 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 2703
embryo 02-04hr
 
 1030
embryo 04-06hr
 
 654
embryo 06-08hr
 
 829
embryo 08-10hr
 
 880
embryo 10-12hr
 
 982
embryo 12-14hr
 
 1285
embryo 14-16hr
 
 1355
embryo 16-18hr
 
 1476
embryo 18-20hr
 
 2260
embryo 20-22hr
 
 2234
embryo 22-24hr
 
 2448
larva L1
 
 1740
larva L2
 
 1474
larva L3 12hr old
 
 1409
larva L3 puffstage 1-2
 
 1213
larva L3 puffstage 3-6
 
 2588
larva L3 puffstage 7-9
 
 2477
white prepupae new
 
 2607
white prepupae 12hr
 
 2934
white prepupae 24hr
 
 3103
pupae 2d postWPP
 
 1766
pupae 3d postWPP
 
 1187
pupae 4d postWPP
 
 1520
adult male 01day
 
 1605
adult male 05day
 
 1851
adult male 30day
 
 1579
adult female 01day
 
 2020
adult female 05day
 
 2398
adult female 30day
 
 2431
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2703)
embryo 02-04hr
 (1030)
embryo 04-06hr
 (654)
embryo 06-08hr
 (829)
embryo 08-10hr
 (880)
embryo 10-12hr
 (982)
embryo 12-14hr
 (1285)
embryo 14-16hr
 (1355)
embryo 16-18hr
 (1476)
embryo 18-20hr
 (2260)
embryo 20-22hr
 (2234)
embryo 22-24hr
 (2448)
larva L1
 (1740)
larva L2
 (1474)
larva L3 12hr old
 (1409)
larva L3 puffstage 1-2
 (1213)
larva L3 puffstage 3-6
 (2588)
larva L3 puffstage 7-9
 (2477)
white prepupae new
 (2607)
white prepupae 12hr
 (2934)
white prepupae 24hr
 (3103)
pupae 2d postWPP
 (1766)
pupae 3d postWPP
 (1187)
pupae 4d postWPP
 (1520)
adult male 01day
 (1605)
adult male 05day
 (1851)
adult male 30day
 (1579)
adult female 01day
 (2020)
adult female 05day
 (2398)
adult female 30day
 (2431)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2703)
embryo 02-04hr
 
 1030
embryo 04-06hr
 
 654
embryo 06-08hr
 
 829
embryo 08-10hr
 
 880
embryo 10-12hr
 
 982
embryo 12-14hr
 
 1285
embryo 14-16hr
 
 1355
embryo 16-18hr
 1476
embryo 18-20hr
 (2260)
embryo 20-22hr
 (2234)
embryo 22-24hr
 (2448)
larva L1
 (1740)
larva L2
 1474
larva L3 12hr old
 1409
larva L3 puffstage 1-2
 
 1213
larva L3 puffstage 3-6
 (2588)
larva L3 puffstage 7-9
 (2477)
white prepupae new
 (2607)
white prepupae 12hr
 (2934)
white prepupae 24hr
 (3103)
pupae 2d postWPP
 (1766)
pupae 3d postWPP
 
 1187
pupae 4d postWPP
 (1520)
adult male 01day
 (1605)
adult male 05day
 (1851)
adult male 30day
 (1579)
adult female 01day
 (2020)
adult female 05day
 (2398)
adult female 30day
 (2431)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2703
embryo 02-04hr
 
 1030
embryo 04-06hr
 
 654
embryo 06-08hr
 
 829
embryo 08-10hr
 
 880
embryo 10-12hr
 
 982
embryo 12-14hr
 
 1285
embryo 14-16hr
 
 1355
embryo 16-18hr
 
 1476
embryo 18-20hr
 
 2260
embryo 20-22hr
 
 2234
embryo 22-24hr
 
 2448
larva L1
 
 1740
larva L2
 
 1474
larva L3 12hr old
 
 1409
larva L3 puffstage 1-2
 
 1213
larva L3 puffstage 3-6
 
 2588
larva L3 puffstage 7-9
 
 2477
white prepupae new
 
 2607
white prepupae 12hr
 
 2934
white prepupae 24hr
 
 3103
pupae 2d postWPP
 
 1766
pupae 3d postWPP
 
 1187
pupae 4d postWPP
 
 1520
adult male 01day
 
 1605
adult male 05day
 
 1851
adult male 30day
 
 1579
adult female 01day
 
 2020
adult female 05day
 
 2398
adult female 30day
 
 2431
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2703
embryo 02-04hr
 
 1030
embryo 04-06hr
 
 654
embryo 06-08hr
 
 829
embryo 08-10hr
 
 880
embryo 10-12hr
 
 982
embryo 12-14hr
 
 1285
embryo 14-16hr
 
 1355
embryo 16-18hr
 
 1476
embryo 18-20hr
 
 2260
embryo 20-22hr
 
 2234
embryo 22-24hr
 
 2448
larva L1
 
 1740
larva L2
 
 1474
larva L3 12hr old
 
 1409
larva L3 puffstage 1-2
 
 1213
larva L3 puffstage 3-6
 
 2588
larva L3 puffstage 7-9
 
 2477
white prepupae new
 
 2607
white prepupae 12hr
 
 2934
white prepupae 24hr
 
 3103
pupae 2d postWPP
 
 1766
pupae 3d postWPP
 
 1187
pupae 4d postWPP
 
 1520
adult male 01day
 
 1605
adult male 05day
 
 1851
adult male 30day
 
 1579
adult female 01day
 
 2020
adult female 05day
 
 2398
adult female 30day
 
 2431
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0025800 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 2703
embryo 02-04hr
 
 1030
embryo 04-06hr
 
 654
embryo 06-08hr
 
 829
embryo 08-10hr
 
 880
embryo 10-12hr
 
 982
embryo 12-14hr
 
 1285
embryo 14-16hr
 
 1355
embryo 16-18hr
 
 1476
embryo 18-20hr
 
 2260
embryo 20-22hr
 
 2234
embryo 22-24hr
 
 2448
larva L1
 
 1740
larva L2
 
 1474
larva L3 12hr old
 
 1409
larva L3 puffstage 1-2
 
 1213
larva L3 puffstage 3-6
 
 2588
larva L3 puffstage 7-9
 
 2477
white prepupae new
 
 2607
white prepupae 12hr
 
 2934
white prepupae 24hr
 
 3103
pupae 2d postWPP
 
 1766
pupae 3d postWPP
 
 1187
pupae 4d postWPP
 
 1520
adult male 01day
 
 1605
adult male 05day
 
 1851
adult male 30day
 
 1579
adult female 01day
 
 2020
adult female 05day
 
 2398
adult female 30day
 
 2431
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2703)
embryo 02-04hr
 (1030)
embryo 04-06hr
 (654)
embryo 06-08hr
 (829)
embryo 08-10hr
 (880)
embryo 10-12hr
 (982)
embryo 12-14hr
 (1285)
embryo 14-16hr
 (1355)
embryo 16-18hr
 (1476)
embryo 18-20hr
 (2260)
embryo 20-22hr
 (2234)
embryo 22-24hr
 (2448)
larva L1
 (1740)
larva L2
 (1474)
larva L3 12hr old
 (1409)
larva L3 puffstage 1-2
 (1213)
larva L3 puffstage 3-6
 (2588)
larva L3 puffstage 7-9
 (2477)
white prepupae new
 (2607)
white prepupae 12hr
 (2934)
white prepupae 24hr
 (3103)
pupae 2d postWPP
 (1766)
pupae 3d postWPP
 (1187)
pupae 4d postWPP
 (1520)
adult male 01day
 (1605)
adult male 05day
 (1851)
adult male 30day
 (1579)
adult female 01day
 (2020)
adult female 05day
 (2398)
adult female 30day
 (2431)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2703)
embryo 02-04hr
 
 1030
embryo 04-06hr
 
 654
embryo 06-08hr
 
 829
embryo 08-10hr
 
 880
embryo 10-12hr
 
 982
embryo 12-14hr
 
 1285
embryo 14-16hr
 
 1355
embryo 16-18hr
 1476
embryo 18-20hr
 2260
embryo 20-22hr
 2234
embryo 22-24hr
 2448
larva L1
 1740
larva L2
 1474
larva L3 12hr old
 1409
larva L3 puffstage 1-2
 
 1213
larva L3 puffstage 3-6
 (2588)
larva L3 puffstage 7-9
 (2477)
white prepupae new
 (2607)
white prepupae 12hr
 (2934)
white prepupae 24hr
 (3103)
pupae 2d postWPP
 1766
pupae 3d postWPP
 
 1187
pupae 4d postWPP
 1520
adult male 01day
 1605
adult male 05day
 1851
adult male 30day
 1579
adult female 01day
 2020
adult female 05day
 2398
adult female 30day
 2431
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2703
embryo 02-04hr
 
 1030
embryo 04-06hr
 
 654
embryo 06-08hr
 
 829
embryo 08-10hr
 
 880
embryo 10-12hr
 
 982
embryo 12-14hr
 
 1285
embryo 14-16hr
 
 1355
embryo 16-18hr
 
 1476
embryo 18-20hr
 
 2260
embryo 20-22hr
 
 2234
embryo 22-24hr
 
 2448
larva L1
 
 1740
larva L2
 
 1474
larva L3 12hr old
 
 1409
larva L3 puffstage 1-2
 
 1213
larva L3 puffstage 3-6
 
 2588
larva L3 puffstage 7-9
 
 2477
white prepupae new
 
 2607
white prepupae 12hr
 
 2934
white prepupae 24hr
 
 3103
pupae 2d postWPP
 
 1766
pupae 3d postWPP
 
 1187
pupae 4d postWPP
 
 1520
adult male 01day
 
 1605
adult male 05day
 
 1851
adult male 30day
 
 1579
adult female 01day
 
 2020
adult female 05day
 
 2398
adult female 30day
 
 2431
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2703
embryo 02-04hr
 
 1030
embryo 04-06hr
 
 654
embryo 06-08hr
 
 829
embryo 08-10hr
 
 880
embryo 10-12hr
 
 982
embryo 12-14hr
 
 1285
embryo 14-16hr
 
 1355
embryo 16-18hr
 
 1476
embryo 18-20hr
 
 2260
embryo 20-22hr
 
 2234
embryo 22-24hr
 
 2448
larva L1
 
 1740
larva L2
 
 1474
larva L3 12hr old
 
 1409
larva L3 puffstage 1-2
 
 1213
larva L3 puffstage 3-6
 
 2588
larva L3 puffstage 7-9
 
 2477
white prepupae new
 
 2607
white prepupae 12hr
 
 2934
white prepupae 24hr
 
 3103
pupae 2d postWPP
 
 1766
pupae 3d postWPP
 
 1187
pupae 4d postWPP
 
 1520
adult male 01day
 
 1605
adult male 05day
 
 1851
adult male 30day
 
 1579
adult female 01day
 
 2020
adult female 05day
 
 2398
adult female 30day
 
 2431
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0025800


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0025800
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult spermathecae. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult crop, larval midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, larval carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0025800 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 311.45
Larval Midgut
 
 173.1
Larval Hindgut
 
 164.8
Larval Malpighian Tubules
 
 131.6
Larval Fat Body
 
 108.1
Larval Salivary Gland
 
 104.3
Larval Trachea
 
 204.925
Larval Carcass
 
 102.45
Adult Head
 
 96.2
Adult Eye
 
 190.85
Adult Brain
 
 114.7
Adult Thoracic-Abdominal Ganglion
 
 89.4
Adult Crop
 
 145.1
Adult Midgut
 
 94.9
Adult Hindgut
 
 113.3
Adult Malpighian Tubules
 
 435.1
Adult Fat Body
 
 183.1
Adult Salivary Gland
 
 127.2
Adult Heart
 
 214.05
Adult VirginFemale Spermatheca
 
 678.6
Adult InseminatedFemale Spermatheca
 
 589.3
Adult Ovary
 
 81
Adult Testis
 
 73.8
Adult Male Accessory Gland
 
 69.2
Adult Carcass
 
 75.2
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 311.45
Larval Midgut
 
 173.1
Larval Hindgut
 
 164.8
Larval Malpighian Tubules
 
 131.6
Larval Fat Body
 
 108.1
Larval Salivary Gland
 
 104.3
Larval Trachea
 
 204.925
Larval Carcass
 
 102.45
Adult Head
 
 96.2
Adult Eye
 
 190.85
Adult Brain
 
 114.7
Adult Thoracic-Abdominal Ganglion
 
 89.4
Adult Crop
 
 145.1
Adult Midgut
 
 94.9
Adult Hindgut
 
 113.3
Adult Malpighian Tubules
 
 435.1
Adult Fat Body
 
 183.1
Adult Salivary Gland
 
 127.2
Adult Heart
 
 214.05
Adult VirginFemale Spermatheca
 (678.6)
Adult InseminatedFemale Spermatheca
 (589.3)
Adult Ovary
 
 81
Adult Testis
 
 73.8
Adult Male Accessory Gland
 
 69.2
Adult Carcass
 
 75.2
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 311.45
Larval Midgut
 
 173.1
Larval Hindgut
 
 164.8
Larval Malpighian Tubules
 
 131.6
Larval Fat Body
 
 108.1
Larval Salivary Gland
 
 104.3
Larval Trachea
 
 204.925
Larval Carcass
 
 102.45
Adult Head
 
 96.2
Adult Eye
 
 190.85
Adult Brain
 
 114.7
Adult Thoracic-Abdominal Ganglion
 
 89.4
Adult Crop
 
 145.1
Adult Midgut
 
 94.9
Adult Hindgut
 
 113.3
Adult Malpighian Tubules
 
 435.1
Adult Fat Body
 
 183.1
Adult Salivary Gland
 
 127.2
Adult Heart
 
 214.05
Adult VirginFemale Spermatheca
 
 678.6
Adult InseminatedFemale Spermatheca
 
 589.3
Adult Ovary
 
 81
Adult Testis
 
 73.8
Adult Male Accessory Gland
 
 69.2
Adult Carcass
 
 75.2
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 311.45
Larval Midgut
 
 173.1
Larval Hindgut
 
 164.8
Larval Malpighian Tubules
 
 131.6
Larval Fat Body
 
 108.1
Larval Salivary Gland
 
 104.3
Larval Trachea
 
 204.925
Larval Carcass
 
 102.45
Adult Head
 
 96.2
Adult Eye
 
 190.85
Adult Brain
 
 114.7
Adult Thoracic-Abdominal Ganglion
 
 89.4
Adult Crop
 
 145.1
Adult Midgut
 
 94.9
Adult Hindgut
 
 113.3
Adult Malpighian Tubules
 
 435.1
Adult Fat Body
 
 183.1
Adult Salivary Gland
 
 127.2
Adult Heart
 
 214.05
Adult VirginFemale Spermatheca
 
 678.6
Adult InseminatedFemale Spermatheca
 
 589.3
Adult Ovary
 
 81
Adult Testis
 
 73.8
Adult Male Accessory Gland
 
 69.2
Adult Carcass
 
 75.2
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0025800 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 311.45
Larval Midgut
 
 173.1
Larval Hindgut
 
 164.8
Larval Malpighian Tubules
 
 131.6
Larval Fat Body
 
 108.1
Larval Salivary Gland
 
 104.3
Larval Trachea
 
 204.925
Larval Carcass
 
 102.45
Adult Head
 
 96.2
Adult Eye
 
 190.85
Adult Brain
 
 114.7
Adult Thoracic-Abdominal Ganglion
 
 89.4
Adult Crop
 
 145.1
Adult Midgut
 
 94.9
Adult Hindgut
 
 113.3
Adult Malpighian Tubules
 
 435.1
Adult Fat Body
 
 183.1
Adult Salivary Gland
 
 127.2
Adult Heart
 
 214.05
Adult VirginFemale Spermatheca
 
 678.6
Adult InseminatedFemale Spermatheca
 
 589.3
Adult Ovary
 
 81
Adult Testis
 
 73.8
Adult Male Accessory Gland
 
 69.2
Adult Carcass
 
 75.2
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 311.45
Larval Midgut
 
 173.1
Larval Hindgut
 
 164.8
Larval Malpighian Tubules
 
 131.6
Larval Fat Body
 
 108.1
Larval Salivary Gland
 
 104.3
Larval Trachea
 
 204.925
Larval Carcass
 
 102.45
Adult Head
 
 96.2
Adult Eye
 
 190.85
Adult Brain
 
 114.7
Adult Thoracic-Abdominal Ganglion
 
 89.4
Adult Crop
 
 145.1
Adult Midgut
 
 94.9
Adult Hindgut
 
 113.3
Adult Malpighian Tubules
 
 435.1
Adult Fat Body
 
 183.1
Adult Salivary Gland
 
 127.2
Adult Heart
 
 214.05
Adult VirginFemale Spermatheca
 678.6
Adult InseminatedFemale Spermatheca
 589.3
Adult Ovary
 
 81
Adult Testis
 
 73.8
Adult Male Accessory Gland
 
 69.2
Adult Carcass
 
 75.2
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 311.45
Larval Midgut
 
 173.1
Larval Hindgut
 
 164.8
Larval Malpighian Tubules
 
 131.6
Larval Fat Body
 
 108.1
Larval Salivary Gland
 
 104.3
Larval Trachea
 
 204.925
Larval Carcass
 
 102.45
Adult Head
 
 96.2
Adult Eye
 
 190.85
Adult Brain
 
 114.7
Adult Thoracic-Abdominal Ganglion
 
 89.4
Adult Crop
 
 145.1
Adult Midgut
 
 94.9
Adult Hindgut
 
 113.3
Adult Malpighian Tubules
 
 435.1
Adult Fat Body
 
 183.1
Adult Salivary Gland
 
 127.2
Adult Heart
 
 214.05
Adult VirginFemale Spermatheca
 
 678.6
Adult InseminatedFemale Spermatheca
 
 589.3
Adult Ovary
 
 81
Adult Testis
 
 73.8
Adult Male Accessory Gland
 
 69.2
Adult Carcass
 
 75.2
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 311.45
Larval Midgut
 
 173.1
Larval Hindgut
 
 164.8
Larval Malpighian Tubules
 
 131.6
Larval Fat Body
 
 108.1
Larval Salivary Gland
 
 104.3
Larval Trachea
 
 204.925
Larval Carcass
 
 102.45
Adult Head
 
 96.2
Adult Eye
 
 190.85
Adult Brain
 
 114.7
Adult Thoracic-Abdominal Ganglion
 
 89.4
Adult Crop
 
 145.1
Adult Midgut
 
 94.9
Adult Hindgut
 
 113.3
Adult Malpighian Tubules
 
 435.1
Adult Fat Body
 
 183.1
Adult Salivary Gland
 
 127.2
Adult Heart
 
 214.05
Adult VirginFemale Spermatheca
 
 678.6
Adult InseminatedFemale Spermatheca
 
 589.3
Adult Ovary
 
 81
Adult Testis
 
 73.8
Adult Male Accessory Gland
 
 69.2
Adult Carcass
 
 75.2
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 96.2
 
NA 
Eye
 
 190.85
 
NA 
Brain
 
 114.7
 
311.45 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 89.4
 
NA 
Crop
 
 145.1
 
173.1 
Midgut
 
 94.9
 
164.8 
Hindgut
 
 113.3
 
131.6 
Malpighian Tubules
 
 435.1
 
108.1 
Fat Body
 
 183.1
 
104.3 
Salivary Gland
 
 127.2
 
NA 
Heart
 
 214.05
 
204.925 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 678.6
 
NA 
InseminatedFemale Spermatheca
 
 589.3
 
NA 
Ovary
 
 81
 
NA 
Testis
 
 73.8
 
NA 
Male Accessory Gland
 
 69.2
 
102.45 
Carcass
 
 75.2

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
axon & eye photoreceptor cell
dorsal cluster neuron & axon | somatic clone
dorsal cluster neuron & neurite | somatic clone
gamma-lobe & dendrite | somatic clone
gamma-lobe & neuron | somatic clone
photoreceptor cell R7 & axon
photoreceptor cell R8 & axon
hide Classical Alleles ( 7 )
For All Classical Alleles Show

Allele of SmoxClassMutagenStocksKnown lesion
SmoxG03481 --
Smox1
0 --
Smoxdon
0 --
SmoxEP13710 --
SmoxGG01120
0 --
SmoxMB3880 Yes
Smoxunspecified
0 --
hide Alleles Carried on Transgenic Constructs ( 9 )
For All Alleles Carried on Transgenic Constructs Show

Allele of SmoxClassMutagenStocksKnown lesion
SmoxGD64521 Yes
SmoxJF023201 Yes
SmoxKK1111631 Yes
SmoxAct5C.T:Zzzz\FLAG0 Yes
SmoxScer\UAS.cGa
0 Yes
SmoxScer\UAS.cZa0 Yes
SmoxScer\UAS.T:Hsap\MYC0 Yes
SmoxScer\UAS.T:Zzzz\FLAG0 Yes
SmoxSDVD.Scer\UAS0 Yes
hide Aneuploid Aberrations
Disrupted in
Not disrupted in
Duplicated in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of mobile activating element
insertion of enhancer trap
hide Gene Ontology: Function, Process & Cellular Component ( 12 unique terms )
hide Terms Based on Experimental Evidence ( 6 terms )
Molecular Function
CV term
References
inferred from physical interaction with vis
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component ( 0 terms)
hide Terms Based on Predictions or Assertions ( 6 terms )
Molecular Function
CV term
References
Biological Process
CV term
References
non-traceable author statement
Cellular Component
CV term
References
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
Smox allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 4 )
Bloomington
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 64 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for identity of: Smox CG2262
Source for database merge of
Source for merge of: Smox Sad
Source for merge of: Smox tmp
Additional comments
hide Other Comments
Smox is required during the late larval stage for development of adult-specific neurons.
babo/Smox mediated TGFΒ/Activin signalling mediates remodeling of mushroom body neurons via controlling EcR-B1 expression.
Overexpression of Med, Smox, Hsap\MADH2 or Hsap\MADH4 causes a similar phenotype in the wing.
Smox is highly expressed in tissues that require babo function and can be phosphorylated by overexpression of activated babo or wild type babo and put together.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
SMAD/FHA domain (IPR008984)
MAD homology, MH1 (IPR013019)
Dwarfin (IPR013790)
SMAD domain-like (IPR017855)
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 22 )
Reported As
Symbol Synonym
tmp
 
Name Synonym
sisters against dpp
Sisters against dpp
 
Smox/dSmad2
temporarily deranged
Secondary FlyBase IDs
  • FBgn0024186
  • FBgn0024304
  • FBgn0040171
hide References ( 95 )
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List References by type
hide Recent research papers ( 6 )
Gibbens et al., 2011, Development 138(13): 2693--2703
Neuroendocrine regulation of Drosophila metamorphosis requires TGF{beta}/Activin signaling. [FBrf0213899]
Goldstein et al., 2011, Hum. Mol. Genet. 20(5): 894--904
SMAD signaling drives heart and muscle dysfunction in a Drosophila model of muscular dystrophy. [FBrf0212934]
Blanco et al., 2010, BMC Dev. Biol. 10: 94
Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812]
Ellis et al., 2010, Dev. Biol. 342(2): 121--133
Activin signaling functions upstream of Gbb to regulate synaptic growth at the Drosophila neuromuscular junction. [FBrf0210828]
Nedelsky et al., 2010, Neuron 67(6): 936--952
Native functions of the androgen receptor are essential to pathogenesis in a Drosophila model of spinobulbar muscular atrophy. [FBrf0211903]
Sander et al., 2010, PLoS ONE 5(4): e10383
Drosophila Smad2 opposes mad signaling during wing vein development. [FBrf0210719]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2010