Home
Gene Hsim\T:Hsim\VP16
| General Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Symbol | Hsim\T:Hsim\VP16 | Species | S. Herpes simplex virus Type 1 | |||||
| Name | α trans-inducing protein | Annotation symbol | ||||||
| Feature type | engineered_foreign_gene | FlyBase ID | FBgn0026017 | |||||
| Gene Model Status | Not Applicable | Stock availability | None publicly available | |||||
| Genomic Location | ||||||||
| Chromosome (arm) | Recombination map | |||||||
| Cytogenetic map | Sequence location | |||||||
 Summary Information | ||||||||
| Automatically generated summary
See sections below for more information | The gene α trans-inducing protein is referred to in FlyBase by the symbol T:Hsim\VP16 (FBgn0026017). It is a engineered_foreign_gene from T:Hsim. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has no annotated transcripts. Gene has not been localized to the genome sequence. | |||||||
|
Recent Updates
|
||||||||
| Description |
What does this section display?
This section contains items that were added to this record for each release.
It currently only tracks new links between this FlyBase report and other
FlyBase data classes (e.g. genes, references, stocks) or controlled
vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
|
|||||||
| Update Feed |
Click the icon below to subscribe to this FlyBase record and receive updates automatically through your
feed reader.
|
|||||||
| FB2013_03 | ||||||||
| FB2013_02 | ||||||||
| All updates | Click here to see a list of all updates to this record from FB2010_08 and on. | |||||||
| Detailed Mapping Data | ||||||||
| FlyBase Computed Cytological Location | ||||||||
Cytogenetic map Evidence for location | ||||||||
| Experimentally Determined Cytological Location | ||||||||
Cytogenetic map Notes References | ||||||||
| Experimentally Determined Recombination Data | ||||||||
| Location | ||||||||
| Left of (cM) | ||||||||
| Right of (cM) | ||||||||
| Notes | ||||||||
| Gene Model & Products | ||||||||
| Comments on Gene Model | ||||||||
| Transcript Data | ||||||||
| Annotated Transcripts | ||||||||
Name FlyBase ID RefSeq ID Length (nt) Associated CDS
(aa) | ||||||||
| Additional Transcript Data & Comments | ||||||||
| Reported size (kB) | ||||||||
| Comments | ||||||||
| External Data | ||||||||
| Crossreferences | ||||||||
|
Polypeptide Data | ||||||||
| Annotated Polypeptides | ||||||||
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein | ||||||||
| Additional Polypeptide Data & Comments | ||||||||
| Reported size (kDa) | ||||||||
| Comments | ||||||||
| External Data | ||||||||
| Linkouts | ||||||||
| Crossreferences | ||||||||
| Sequences Consistent with the Gene Model
| ||||||||
| DDBJ / EMBL / GenBank | DNA sequence Protein
sequence Name | |||||||
| UniProtKB/Swiss-Prot | ||||||||
| UniProtKB/TrEMBL | ||||||||
| Mapped Features | ||||||||
Type Symbol &
Location Additional Notes References | ||||||||
| External Data | ||||||||
| Linkouts | ||||||||
| Crossreferences | ||||||||
| Expression Data | ||||||||
| Transcript Expression | ||||||||
| Additional Descriptive Data | ||||||||
| Marker for | ||||||||
| Subcellular Localization | ||||||||
| CV Term | ||||||||
| Polypeptide Expression | ||||||||
| Additional Descriptive Data | ||||||||
| Marker for | ||||||||
| Subcellular Localization (GO Cellular Component) | ||||||||
CV term References | ||||||||
| Expression Deduced from Reporters | ||||||||
|
High-Throughput Expression Data
| ||||||||
| Associated Tools | ||||||||
| Reference |
See Gelbart and Emmert, 2010.10.13
for analysis details and data files for all genes.
| |||||||
|
FlyAtlas Anatomy Microarray
| ||||||||
|
modENCODE Anatomy RNA-Seq
| ||||||||
|
modENCODE Development RNA-Seq
| ||||||||
|
modENCODE Cell Lines RNA-Seq
| ||||||||
|
modENCODE Treatments RNA-Seq
| ||||||||
|
Expression Clusters
| ||||||||
|
External Data & Images
| ||||||||
| Linkouts | ||||||||
| Alleles & Phenotypes | ||||||||
| Summary of Allele Phenotypes | ||||||||
Phenotype manifest
in Allele | ||||||||
| Classical Alleles ( 0 ) | ||||||||
| For All Classical Alleles Show | ||||||||
| ||||||||
| Alleles Carried on Transgenic Constructs
( 0 ) | ||||||||
| For All Alleles Carried on Transgenic Constructs Show | ||||||||
| ||||||||
| Aneuploid Aberrations | ||||||||
| Transgenic Constructs & Insertions
| ||||||||
| Transgenic Constructs | ||||||||
Type of
construct Name Expression
data | ||||||||
| Insertions | ||||||||
Type of insertions Name Expression
data | ||||||||
| Gene Ontology: Function, Process
& Cellular Component ( 0 unique terms ) | ||||||||
| Terms Based on
Experimental Evidence ( 0 terms ) | ||||||||
| Terms Based on Predictions or
Assertions ( 0 terms ) | ||||||||
| Sequence Ontology: Class of Gene | ||||||||
| Interactions & Pathways | ||||||||
|
Summary of Physical Interactions
| ||||||||
| Summary of Genetic Interactions | ||||||||
| Interacts with | Please look at the allele data
for full details of the genetic interactions T:Hsim\VP16 allele Gene References | |||||||
| External Data | ||||||||
| Linkouts | ||||||||
| Orthologs
| ||||||||
|
OrthoDB Orthologs (0)
- based on analysis using Dmel annotation version 5.41
| ||||||||
| OrthoDB Ortholog Groups | ||||||||
OrthoDB orthology group searches Drosophila inclusive ortholog search No orthologs identified Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified | ||||||||
| Ortholog(s) in Drosophila melanogaster (None identified) | ||||||||
No D. melanogaster orthologies identified | ||||||||
| Human Orthologs (0) | ||||||||
Gene OMIM HGNC | ||||||||
| AAA Orthologs (0)
based on analysis using Dmel annotation version 4.3
| ||||||||
No orthologs identified
| ||||||||
| Stocks & Reagents | ||||||||
| Stocks Listed in FlyBase ( 0 ) | ||||||||
| Genomic Clones ( 0 ) | ||||||||
| cDNA Clones ( 0 ) | ||||||||
| cDNA Clones, Fully Sequenced | ||||||||
| BDGP DGC clones | ||||||||
| Other clones | ||||||||
| cDNA Clones, End Sequenced (ESTs) | ||||||||
| BDGP DGC clones | ||||||||
| Other clones | ||||||||
| RNAi & Array Information | ||||||||
| Linkouts | ||||||||
|
Antibody Information
| ||||||||
| Other Information | ||||||||
| Discoverer | ||||||||
| Etymology | ||||||||
| Identification | ||||||||
| Relationship to Other Genes | ||||||||
| Source for database identity of | ||||||||
| Source for database merge of | ||||||||
| Tags | (Hacker and Perrimon, 1998, Axelrod et al., 1998, Cleghon et al., 1998, Jazwinska et al., 1999, Maxton-Kuchenmeister et al., 1999, Reich et al., 1999, Kaltschmidt et al., 2000, Lu et al., 1999, Wodarz et al., 1999, Morel and Schweisguth, 2000, Grosshans and Wieschaus, 2000, Baum et al., 2000, Hunter and Wieschaus, 2000, Wodarz et al., 2000, Noll et al., 2000, Wakefield et al., 2000, Wakefield, 2000, Petronczki and Knoblich, 2001, Lu et al., 2001, Dorfman and Shilo, 2001, Glazer and Shilo, 2001, Tolwinski and Wieschaus, 2001, Sun et al., 2001, Lee et al., 2001, Schaefer et al., 2001, Baum and Perrimon, 2001, Brown et al., 2001, Hartmann et al., 2001, Hong et al., 2001, Chen et al., 2002, Minestrini et al., 2002, Hunter et al., 2002, Lecuit et al., 2002, Ahmed et al., 2002, Raff et al., 2002, Yoo et al., 2002, Eldar et al., 2002, Schnorrer et al., 2002, Herzig et al., 2002, Bossing et al., 2002, Martin and St Johnston, 2003, Martin and St. Johnston, 2003, Januschke et al., 2002, Chen et al., 2003, Petritsch et al., 2003, Takashima et al., 2002, Kambris et al., 2003, Albertson and Doe, 2003, Betschinger et al., 2003, Januschke et al., 2002, Wasser and Chia, 2003, Fuse et al., 2003, Brown et al., 2003, Forrest and Gavis, 2003, Renault et al., 2003, Benton and St. Johnston, 2003, Farge, 2003, Grosshans et al., 2003, Hamaguchi et al., 2004, Barros et al., 2003, Estella et al., 2003, Carrera et al., 2003, Roper and Brown, 2003, Minestrini et al., 2003, Benton and St. Johnston, 2003, Zallen and Wieschaus, 2004, Izumi et al., 2004, Bertet et al., 2004, Wang et al., 2004, Bauer et al., 2004, Dienemann and Sprenger, 2004, Mathe et al., 2004, Yan and Macdonald, 2004, Sotillos et al., 2004, Xu et al., 2005, von Stein et al., 2005, Mirouse et al., 2005, Pitsouli and Delidakis, 2005, Sapir et al., 2005, Dawes-Hoang et al., 2005, Goodliffe et al., 2005, Li et al., 2005) (Van Doren, 1997.3.14, Van Doren et al., 1998, Rorth, 1998, Santel et al., 1998, Van Doren et al., 1998, Ruden et al., 2000, Andrews et al., 2000, Wasser and Chia, 2000, Mata et al., 2000, Grieder et al., 2000, Noll et al., 2000, Chen et al., 2000, Duchek and Rorth, 2001, Warren, 2000, Huynh et al., 2001, Starz-Gaiano et al., 2001, Casali and Casanova, 2001, Bolivar et al., 2001, Sonoda and Wharton, 2001, Amikura et al., 2001, Dorn et al., 2001, Harris and Macdonald, 2001, Lee et al., 2001, Duchek et al., 2001, Labourier et al., 2001, Ghiglione et al., 2002, Kiger et al., 2001, Tulina and Matunis, 2001, Schulz et al., 2001, Hudson and Cooley, 2002, Kelso et al., 2002, Mason et al., 2002, Riechmann et al., 2002, Trieselmann and Wilde, 2002, Sinka et al., 2002, Vaccari and Ephrussi, 2002, Gorjanacz et al., 2002, Benton et al., 2002, Jackson and Berg, 2002, Schulz et al., 2002, Megraw et al., 2002, Polesello et al., 2002, Kashevsky et al., 2002, Chen and McKearin, 2003, Findley et al., 2003, Juge et al., 2002, Timinszky et al., 2002, Januschke et al., 2002, Filardo and Ephrussi, 2003, Manheim and McKim, 2003, Cox and Spradling, 2003, Van Doren et al., 2003, Kramer and Hawley, 2003, Doerflinger et al., 2003, Peterson et al., 2003, Kramer and Hawley, 2003, Yamashita et al., 2003, Jenkins et al., 2003, Ghiglione et al., 2003, Abdu et al., 2003, Shivdasani and Ingham, 2003, Nelson et al., 2004, Laundrie et al., 2003, Mason et al., 2003, Harris et al., 2003, Kunwar et al., 2003, Ye et al., 2004, Yano et al., 2004, Iida and Lilly, 2004, Kawase et al., 2004, Yoshida et al., 2004, Casanueva and Ferguson, 2004, Ghosh-Roy et al., 2004, Hachet and Ephrussi, 2004, Gilboa and Lehmann, 2004, Schulz et al., 2004, Bartoszewski et al., 2004, Hanyu-Nakamura et al., 2004, Riechmann and Ephrussi, 2004, Hsouna et al., 2004, Snapp et al., 2004, Semotok et al., 2005, Anderson et al., 2005, Hatfield et al., 2005, Ganguly et al., 2005, Serbus et al., 2005, Swan et al., 2005, Roper et al., 2005, Gordon et al., 2005, Xi et al., 2005, Cui and Hawley, 2005, Rosales-Nieves et al., 2006) | |||||||
| Additional comments | ||||||||
| Other Comments | ||||||||
FlyBase curator comment: FBrf0151816 has been retracted, see Struhl, 2004, Cell 116(3): 481. | ||||||||
| Tag or Foreign
Gene Data | ||||||||
| ||||||||
| External Crossreferences & Linkouts
| ||||||||
| Sequence Crossreferences | ||||||||
| Other Crossreferences | ||||||||
| Linkouts | ||||||||
| Synonyms & Secondary IDs
( 3 ) | ||||||||
| Reported As | ||||||||
| Symbol Synonym | T:Hsim\VP16 T:VP16 | |||||||
| Name Synonym | α trans-inducing protein | |||||||
| Secondary FlyBase IDs | ||||||||
| References ( 310 ) | ||||||||
| Generate a list of | ||||||||
| List References by type |
| |||||||
|
Recent research papers ( 9 ) | ||||||||
| ||||||||
|
Recent reviews (0)
| ||||||||
| All reviews listed in FlyBase were published before 2011 | ||||||||