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Gene Dmel\bip2

General Information
Symbol	Dmel\bip2	Species	D. melanogaster
Name	bip2	Annotation symbol	CG2009
Feature type	protein_coding_gene	FlyBase ID	FBgn0026262
Gene Model Status	Current	Stock availability	7 publicly available
Also Known As	TFIID, TAF3, TAFII155, DmTAF3
Genomic Location
Chromosome (arm)	4	Recombination map
Cytogenetic map	102C1-102C1	Sequence location	4:480,508..487,450 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene bip2 is referred to in FlyBase by the symbol Dmel\bip2 (CG2009, FBgn0026262). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: p53 binding; protein binding; transcription factor binding; POZ domain binding; chromatin binding. There is experimental evidence that it is involved in the biological process: positive regulation of transcription from RNA polymerase II promoter. 7 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Bromodomain transcription factor; Zinc finger, FYVE/PHD-type; Zinc finger, PHD-finger; Zinc finger, PHD-type; Zinc finger, PHD-type, conserved site; Zinc finger, RING/FYVE/PHD-type. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval/adult central nervous system, larval trachea, adult ovary, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, adult spermathecae, adult testis, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1639551_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of bip2. Gene sequence location is 4:480508..487450.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10	References Chopra et al., 2008, Dev. Biol. 317(2): 660--670 Controlled Vocabulary Terms positive regulation of transcription from RNA polymerase II promoter chromatin binding
FB2012_01	References Hudry et al., 2011, BMC Biol. 9: 5 Vorobyeva et al., 2009, Cell Cycle 8(14): 2152--2156 Sequence features BKN23027 HFA17170 Controlled Vocabulary Terms protein binding p53 binding
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 102C1-102C1
Experimentally Determined Cytological Location
Cytogenetic map Notes References 102B-102B   (determined by in situ hybridisation)   (Pointud et al., 2001) 102B-102B     (Pointud, 1997.9.26)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\bip2 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) bip2-RA FBtr0089110  NM_143666   4515   1406
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein bip2-PA   FBpp0088179   154.5   1406   9.85     NP_651923   AAF59342
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, PHD-type (IPR001965) Bromodomain transcription factor (IPR006565) Zinc finger, FYVE/PHD-type (IPR011011) Zinc finger, PHD-type, conserved site (IPR019786) Zinc finger, PHD-finger (IPR019787) Zinc finger, RING/FYVE/PHD-type (IPR013083)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA440467   AA540312   AA695211   AA736037   AA816623   AA817654   AE014135 AAF59342   AI257456   AI455431   AJ251945 CAB64265   AJ292191 CAC34474   AW941356   AW942542   AY061276 AAL28824   AY069276 AAL39421   AY118930 AAM50790   BF497619   BI169634   BI214413   BI214570   BI237336   BI242788   BI366126   BI367756   BI367769   BI368116   BI589644   BP548020   BP551938   BP551939   BP552614   BP552615   BQ102833   BT050553   CO153447   CO177887   CO185697   CO187302   CO189972   CO191235   CO192313   CO192638   CO194995   CO196615   CO264457   CO267114   CO279934   CO282073   CO284107   CO284316   CO284386   CO286736   CO286877   CO287752   CO290145   CO293119   CO296439   CO297662   CO302611   CO303579   CO305038   CO307012   CO307053   CO307698   CO309918   CO314455   CO317778   CO318403   CO322243   CO323592   CO323891   CO324351   CO326974   CO339597   CO344416   EC051694   EC052170   EC053683   EC054189   EC055738   EC056728   EC057214   EC061746   EC062869   EC064260   EC064737   EC066783   EC069528   EC072905   EC077205   EC077481   EC079788   EC079954   EC081694   EC087222   EC196108   EC202001   EC203169   EC204195   EC205772   EC207455   EC211702   EC214910   EC217865   EC217878   EC221241   EC222436   EC223720   EC228777   EC233465   EC237403   EC241283   EC245952   EC246016   EC246723   EC247078   EC248537   EC249359   EC254138   EC257884   EC258089   EC265462   EV587211   Y14999 CAB40628
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8MSB9 Q8T9I5 Q95RM4 Q9U1I0 Q9V4D4 Q9XZU7
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
immunolocalization Stage Tissue/Position (including subcellular localization) Reference embryonic stage   cell   • nucleus (Gangloff et al., 2001) organism | ubiquitous   • nucleus (Gangloff et al., 2001) cell   • transcriptionally active chromatin (Gangloff et al., 2001) western blot Stage Tissue/Position (including subcellular localization) Reference embryonic stage   organism   • nucleus (Gangloff et al., 2001)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0026262    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0026262 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0026262 expression level Developmental Stage   Expression Level embryo 00-02hr    1787 embryo 02-04hr    2374 embryo 04-06hr    3106 embryo 06-08hr    2513 embryo 08-10hr    2702 embryo 10-12hr    1480 embryo 12-14hr    3968 embryo 14-16hr    1297 embryo 16-18hr    2094 embryo 18-20hr    1230 embryo 20-22hr    1008 embryo 22-24hr    1716 larva L1    789 larva L2    777 larva L3 12hr old    608 larva L3 puffstage 1-2    793 larva L3 puffstage 3-6    1157 larva L3 puffstage 7-9    1954 white prepupae new    1895 white prepupae 12hr    2142 white prepupae 24hr    2413 pupae 2d postWPP    2104 pupae 3d postWPP    1452 pupae 4d postWPP    535 adult male 01day    910 adult male 05day    702 adult male 30day    535 adult female 01day    845 adult female 05day    2196 adult female 30day    1622 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1787) embryo 02-04hr  (2374) embryo 04-06hr  (3106) embryo 06-08hr  (2513) embryo 08-10hr  (2702) embryo 10-12hr  (1480) embryo 12-14hr  (3968) embryo 14-16hr  (1297) embryo 16-18hr  (2094) embryo 18-20hr  (1230) embryo 20-22hr  (1008) embryo 22-24hr  (1716) larva L1  (789) larva L2  (777) larva L3 12hr old  (608) larva L3 puffstage 1-2  (793) larva L3 puffstage 3-6  (1157) larva L3 puffstage 7-9  (1954) white prepupae new  (1895) white prepupae 12hr  (2142) white prepupae 24hr  (2413) pupae 2d postWPP  (2104) pupae 3d postWPP  (1452) pupae 4d postWPP  (535) adult male 01day  (910) adult male 05day  (702) adult male 30day  (535) adult female 01day  (845) adult female 05day  (2196) adult female 30day  (1622) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1787) embryo 02-04hr  (2374) embryo 04-06hr  (3106) embryo 06-08hr  (2513) embryo 08-10hr  (2702) embryo 10-12hr  1480 embryo 12-14hr  (3968) embryo 14-16hr    1297 embryo 16-18hr  (2094) embryo 18-20hr    1230 embryo 20-22hr    1008 embryo 22-24hr  (1716) larva L1    789 larva L2    777 larva L3 12hr old    608 larva L3 puffstage 1-2    793 larva L3 puffstage 3-6    1157 larva L3 puffstage 7-9  (1954) white prepupae new  (1895) white prepupae 12hr  (2142) white prepupae 24hr  (2413) pupae 2d postWPP  (2104) pupae 3d postWPP  1452 pupae 4d postWPP    535 adult male 01day    910 adult male 05day    702 adult male 30day    535 adult female 01day    845 adult female 05day  (2196) adult female 30day  (1622) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1787 embryo 02-04hr    2374 embryo 04-06hr    3106 embryo 06-08hr    2513 embryo 08-10hr    2702 embryo 10-12hr    1480 embryo 12-14hr    3968 embryo 14-16hr    1297 embryo 16-18hr    2094 embryo 18-20hr    1230 embryo 20-22hr    1008 embryo 22-24hr    1716 larva L1    789 larva L2    777 larva L3 12hr old    608 larva L3 puffstage 1-2    793 larva L3 puffstage 3-6    1157 larva L3 puffstage 7-9    1954 white prepupae new    1895 white prepupae 12hr    2142 white prepupae 24hr    2413 pupae 2d postWPP    2104 pupae 3d postWPP    1452 pupae 4d postWPP    535 adult male 01day    910 adult male 05day    702 adult male 30day    535 adult female 01day    845 adult female 05day    2196 adult female 30day    1622 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1787 embryo 02-04hr    2374 embryo 04-06hr    3106 embryo 06-08hr    2513 embryo 08-10hr    2702 embryo 10-12hr    1480 embryo 12-14hr    3968 embryo 14-16hr    1297 embryo 16-18hr    2094 embryo 18-20hr    1230 embryo 20-22hr    1008 embryo 22-24hr    1716 larva L1    789 larva L2    777 larva L3 12hr old    608 larva L3 puffstage 1-2    793 larva L3 puffstage 3-6    1157 larva L3 puffstage 7-9    1954 white prepupae new    1895 white prepupae 12hr    2142 white prepupae 24hr    2413 pupae 2d postWPP    2104 pupae 3d postWPP    1452 pupae 4d postWPP    535 adult male 01day    910 adult male 05day    702 adult male 30day    535 adult female 01day    845 adult female 05day    2196 adult female 30day    1622 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0026262 expression level Developmental Stage   Expression Level embryo 00-02hr    1787 embryo 02-04hr    2374 embryo 04-06hr    3106 embryo 06-08hr    2513 embryo 08-10hr    2702 embryo 10-12hr    1480 embryo 12-14hr    3968 embryo 14-16hr    1297 embryo 16-18hr    2094 embryo 18-20hr    1230 embryo 20-22hr    1008 embryo 22-24hr    1716 larva L1    789 larva L2    777 larva L3 12hr old    608 larva L3 puffstage 1-2    793 larva L3 puffstage 3-6    1157 larva L3 puffstage 7-9    1954 white prepupae new    1895 white prepupae 12hr    2142 white prepupae 24hr    2413 pupae 2d postWPP    2104 pupae 3d postWPP    1452 pupae 4d postWPP    535 adult male 01day    910 adult male 05day    702 adult male 30day    535 adult female 01day    845 adult female 05day    2196 adult female 30day    1622 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1787) embryo 02-04hr  (2374) embryo 04-06hr  (3106) embryo 06-08hr  (2513) embryo 08-10hr  (2702) embryo 10-12hr  (1480) embryo 12-14hr  (3968) embryo 14-16hr  (1297) embryo 16-18hr  (2094) embryo 18-20hr  (1230) embryo 20-22hr  (1008) embryo 22-24hr  (1716) larva L1  (789) larva L2  (777) larva L3 12hr old  (608) larva L3 puffstage 1-2  (793) larva L3 puffstage 3-6  (1157) larva L3 puffstage 7-9  (1954) white prepupae new  (1895) white prepupae 12hr  (2142) white prepupae 24hr  (2413) pupae 2d postWPP  (2104) pupae 3d postWPP  (1452) pupae 4d postWPP  (535) adult male 01day  (910) adult male 05day  (702) adult male 30day  (535) adult female 01day  (845) adult female 05day  (2196) adult female 30day  (1622) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  1787 embryo 02-04hr  2374 embryo 04-06hr  (3106) embryo 06-08hr  (2513) embryo 08-10hr  (2702) embryo 10-12hr  1480 embryo 12-14hr  (3968) embryo 14-16hr    1297 embryo 16-18hr  2094 embryo 18-20hr    1230 embryo 20-22hr    1008 embryo 22-24hr  1716 larva L1    789 larva L2    777 larva L3 12hr old    608 larva L3 puffstage 1-2    793 larva L3 puffstage 3-6    1157 larva L3 puffstage 7-9  1954 white prepupae new  1895 white prepupae 12hr  2142 white prepupae 24hr  2413 pupae 2d postWPP  2104 pupae 3d postWPP  1452 pupae 4d postWPP    535 adult male 01day    910 adult male 05day    702 adult male 30day    535 adult female 01day    845 adult female 05day  2196 adult female 30day  1622 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1787 embryo 02-04hr    2374 embryo 04-06hr    3106 embryo 06-08hr    2513 embryo 08-10hr    2702 embryo 10-12hr    1480 embryo 12-14hr    3968 embryo 14-16hr    1297 embryo 16-18hr    2094 embryo 18-20hr    1230 embryo 20-22hr    1008 embryo 22-24hr    1716 larva L1    789 larva L2    777 larva L3 12hr old    608 larva L3 puffstage 1-2    793 larva L3 puffstage 3-6    1157 larva L3 puffstage 7-9    1954 white prepupae new    1895 white prepupae 12hr    2142 white prepupae 24hr    2413 pupae 2d postWPP    2104 pupae 3d postWPP    1452 pupae 4d postWPP    535 adult male 01day    910 adult male 05day    702 adult male 30day    535 adult female 01day    845 adult female 05day    2196 adult female 30day    1622 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1787 embryo 02-04hr    2374 embryo 04-06hr    3106 embryo 06-08hr    2513 embryo 08-10hr    2702 embryo 10-12hr    1480 embryo 12-14hr    3968 embryo 14-16hr    1297 embryo 16-18hr    2094 embryo 18-20hr    1230 embryo 20-22hr    1008 embryo 22-24hr    1716 larva L1    789 larva L2    777 larva L3 12hr old    608 larva L3 puffstage 1-2    793 larva L3 puffstage 3-6    1157 larva L3 puffstage 7-9    1954 white prepupae new    1895 white prepupae 12hr    2142 white prepupae 24hr    2413 pupae 2d postWPP    2104 pupae 3d postWPP    1452 pupae 4d postWPP    535 adult male 01day    910 adult male 05day    702 adult male 30day    535 adult female 01day    845 adult female 05day    2196 adult female 30day    1622 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0026262    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0026262 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval/adult central nervous system, larval trachea, adult ovary, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, adult spermathecae, adult testis, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0026262 expression level Tissue   Expression Level Larval Central Nervous System    729.125 Larval Midgut    265.9 Larval Hindgut    363.8 Larval Malpighian Tubules    345.5 Larval Fat Body    277 Larval Salivary Gland    386.7 Larval Trachea    717.625 Larval Carcass    347.25 Adult Head    337.7 Adult Eye    423.8 Adult Brain    875.4 Adult Thoracic-Abdominal Ganglion    755.8 Adult Crop    360.8 Adult Midgut    284.3 Adult Hindgut    338 Adult Malpighian Tubules    188.8 Adult Fat Body    309.9 Adult Salivary Gland    474.6 Adult Heart    381.85 Adult VirginFemale Spermatheca    310.4 Adult InseminatedFemale Spermatheca    340.7 Adult Ovary    580.4 Adult Testis    214.5 Adult Male Accessory Gland    576.5 Adult Carcass    297.4 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (729.125) Larval Midgut    265.9 Larval Hindgut    363.8 Larval Malpighian Tubules    345.5 Larval Fat Body    277 Larval Salivary Gland    386.7 Larval Trachea  (717.625) Larval Carcass    347.25 Adult Head    337.7 Adult Eye    423.8 Adult Brain  (875.4) Adult Thoracic-Abdominal Ganglion  (755.8) Adult Crop    360.8 Adult Midgut    284.3 Adult Hindgut    338 Adult Malpighian Tubules    188.8 Adult Fat Body    309.9 Adult Salivary Gland    474.6 Adult Heart    381.85 Adult VirginFemale Spermatheca    310.4 Adult InseminatedFemale Spermatheca    340.7 Adult Ovary  (580.4) Adult Testis    214.5 Adult Male Accessory Gland  (576.5) Adult Carcass    297.4 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    729.125 Larval Midgut    265.9 Larval Hindgut    363.8 Larval Malpighian Tubules    345.5 Larval Fat Body    277 Larval Salivary Gland    386.7 Larval Trachea    717.625 Larval Carcass    347.25 Adult Head    337.7 Adult Eye    423.8 Adult Brain    875.4 Adult Thoracic-Abdominal Ganglion    755.8 Adult Crop    360.8 Adult Midgut    284.3 Adult Hindgut    338 Adult Malpighian Tubules    188.8 Adult Fat Body    309.9 Adult Salivary Gland    474.6 Adult Heart    381.85 Adult VirginFemale Spermatheca    310.4 Adult InseminatedFemale Spermatheca    340.7 Adult Ovary    580.4 Adult Testis    214.5 Adult Male Accessory Gland    576.5 Adult Carcass    297.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    729.125 Larval Midgut    265.9 Larval Hindgut    363.8 Larval Malpighian Tubules    345.5 Larval Fat Body    277 Larval Salivary Gland    386.7 Larval Trachea    717.625 Larval Carcass    347.25 Adult Head    337.7 Adult Eye    423.8 Adult Brain    875.4 Adult Thoracic-Abdominal Ganglion    755.8 Adult Crop    360.8 Adult Midgut    284.3 Adult Hindgut    338 Adult Malpighian Tubules    188.8 Adult Fat Body    309.9 Adult Salivary Gland    474.6 Adult Heart    381.85 Adult VirginFemale Spermatheca    310.4 Adult InseminatedFemale Spermatheca    340.7 Adult Ovary    580.4 Adult Testis    214.5 Adult Male Accessory Gland    576.5 Adult Carcass    297.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0026262 expression level Tissue   Expression Level Larval Central Nervous System    729.125 Larval Midgut    265.9 Larval Hindgut    363.8 Larval Malpighian Tubules    345.5 Larval Fat Body    277 Larval Salivary Gland    386.7 Larval Trachea    717.625 Larval Carcass    347.25 Adult Head    337.7 Adult Eye    423.8 Adult Brain    875.4 Adult Thoracic-Abdominal Ganglion    755.8 Adult Crop    360.8 Adult Midgut    284.3 Adult Hindgut    338 Adult Malpighian Tubules    188.8 Adult Fat Body    309.9 Adult Salivary Gland    474.6 Adult Heart    381.85 Adult VirginFemale Spermatheca    310.4 Adult InseminatedFemale Spermatheca    340.7 Adult Ovary    580.4 Adult Testis    214.5 Adult Male Accessory Gland    576.5 Adult Carcass    297.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  729.125 Larval Midgut    265.9 Larval Hindgut    363.8 Larval Malpighian Tubules    345.5 Larval Fat Body    277 Larval Salivary Gland    386.7 Larval Trachea  717.625 Larval Carcass    347.25 Adult Head    337.7 Adult Eye    423.8 Adult Brain  (875.4) Adult Thoracic-Abdominal Ganglion  755.8 Adult Crop    360.8 Adult Midgut    284.3 Adult Hindgut    338 Adult Malpighian Tubules    188.8 Adult Fat Body    309.9 Adult Salivary Gland    474.6 Adult Heart    381.85 Adult VirginFemale Spermatheca    310.4 Adult InseminatedFemale Spermatheca    340.7 Adult Ovary  580.4 Adult Testis    214.5 Adult Male Accessory Gland  576.5 Adult Carcass    297.4 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    729.125 Larval Midgut    265.9 Larval Hindgut    363.8 Larval Malpighian Tubules    345.5 Larval Fat Body    277 Larval Salivary Gland    386.7 Larval Trachea    717.625 Larval Carcass    347.25 Adult Head    337.7 Adult Eye    423.8 Adult Brain    875.4 Adult Thoracic-Abdominal Ganglion    755.8 Adult Crop    360.8 Adult Midgut    284.3 Adult Hindgut    338 Adult Malpighian Tubules    188.8 Adult Fat Body    309.9 Adult Salivary Gland    474.6 Adult Heart    381.85 Adult VirginFemale Spermatheca    310.4 Adult InseminatedFemale Spermatheca    340.7 Adult Ovary    580.4 Adult Testis    214.5 Adult Male Accessory Gland    576.5 Adult Carcass    297.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    729.125 Larval Midgut    265.9 Larval Hindgut    363.8 Larval Malpighian Tubules    345.5 Larval Fat Body    277 Larval Salivary Gland    386.7 Larval Trachea    717.625 Larval Carcass    347.25 Adult Head    337.7 Adult Eye    423.8 Adult Brain    875.4 Adult Thoracic-Abdominal Ganglion    755.8 Adult Crop    360.8 Adult Midgut    284.3 Adult Hindgut    338 Adult Malpighian Tubules    188.8 Adult Fat Body    309.9 Adult Salivary Gland    474.6 Adult Heart    381.85 Adult VirginFemale Spermatheca    310.4 Adult InseminatedFemale Spermatheca    340.7 Adult Ovary    580.4 Adult Testis    214.5 Adult Male Accessory Gland    576.5 Adult Carcass    297.4 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    337.7   NA  Eye    423.8   NA  Brain    875.4   729.125  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    755.8   NA  Crop    360.8   265.9  Midgut    284.3   363.8  Hindgut    338   345.5  Malpighian Tubules    188.8   277  Fat Body    309.9   386.7  Salivary Gland    474.6   NA  Heart    381.85   717.625  Trachea    NA   NA  VirginFemale Spermatheca    310.4   NA  InseminatedFemale Spermatheca    340.7   NA  Ovary    580.4   NA  Testis    214.5   NA  Male Accessory Gland    576.5   347.25  Carcass    297.4 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_05
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0026262 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG2009-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for bip2 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | first instar larval stage bip23 bip24 viable, with Scer\GAL4pnr-MD237 bip2GD4163 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of bip2 Class Mutagen Stocks Known lesion bip2MI00014 1 --
Alleles Carried on Transgenic Constructs ( 6 )
For All Alleles Carried on Transgenic Constructs Show
Allele of bip2 Class Mutagen Stocks Known lesion bip2GD4163 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes bip2Scer\UAS.cPa in vitro construct - regulatory fusion 2 Yes bip24 in vitro construct 1 Yes bip2KK102931 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes bip23 in vitro construct 0 Yes bip2Scer\UAS.T:Ivir\HA1 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes
Aneuploid Aberrations
Not disrupted in	Df(4)C1-7a (Sousa-Neves et al., 2005)
Disrupted in	Df(4)5-M263 (Sun et al., 2004)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4163} NA P{KK102931} NA P{UAS-bip2.P} NA P{UAS-bip2-HA} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}bip2MI00014 NA
Gene Ontology: Function, Process & Cellular Component ( 10 unique terms )
Terms Based on Experimental Evidence ( 8 terms )
Molecular Function
CV term Evidence References
chromatin binding inferred from direct assay (Gangloff et al., 2001, Pointud et al., 2001, Chopra et al., 2008) p53 binding inferred from physical interaction with p53 (Bereczki et al., 2008) POZ domain binding inferred from physical interaction with bab1 (Pointud et al., 2001) inferred from physical interaction with bab2 (Pointud et al., 2001) protein binding inferred from physical interaction with bab1 (Pointud et al., 2001) inferred from physical interaction with bab2 (Pointud et al., 2001) transcription factor binding inferred from physical interaction with bab1 (Pointud et al., 2001) inferred from physical interaction with bab2 (Pointud et al., 2001) inferred from physical interaction with Taf10 (Gangloff et al., 2001) inferred from physical interaction with Trl (Chopra et al., 2008)
Biological Process
CV term Evidence References
positive regulation of transcription from RNA polymerase II promoter inferred from genetic interaction with Trl (Chopra et al., 2008) inferred from mutant phenotype (Chopra et al., 2008)
Cellular Component
CV term Evidence References
nucleus inferred from direct assay (Pointud et al., 2001, Gangloff et al., 2001, Chopra et al., 2008) transcription factor TFIID complex inferred from direct assay (Gangloff et al., 2001)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
zinc ion binding inferred from electronic annotation with InterPro:IPR001965 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
regulation of transcription from RNA polymerase II promoter non-traceable author statement (Davidson, 2001.1.18)
Cellular Component
CV term Evidence References
transcription factor TFIID complex non-traceable author statement (Davidson, 2001.1.18)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions bip2 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 68626 DroID - A comprehensive database of gene and protein interactions. • FBgn0026262 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43793
Orthologs
Genome-wide drosophilid orthologs	Dana\GF22835 Dere\GG16447 Dgri\GH23929 Dmoj\GI14094 Dper\GL18176 Dpse\GA15182 Dsec\GM26780 Dsim\GD15475 Dvir\GJ14147 Dwil\GK13694 Dyak\GE14514
Curated drosophilid orthologs	Dpse\GA15182   Dsim\bip2 (Swanson et al., 2001)
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL010857-PA Aedes aegypti (mosquito) AGAP000189-PA Anopheles gambiae (mosquito) XP_001945181.1 Acyrthosiphon pisum (pea aphid) 98089 Branchiostoma floridae (lancelet) BGIBMGA010005-PA Bombyx mori (silk worm) ENSBTAP00000003674 Bos taurus (bovine) CN25944 Caenorhabditis brenneri (small nematode) CBP07856 Caenorhabditis briggsae (nematode) JA16463 Caenorhabditis japonica (nematode) ENSCPOP00000001758 Cavia porcellus (guinea pig) 319993 Daphnia pulex (daphnia) ENSDARP00000066928 Danio rerio (zebra fish) ENSECAP00000016148 Equus caballus (horse) ENSGALP00000010875 Gallus gallus (chicken) ENSP00000340271 Homo sapiens (human) ENSMODP00000035095 Monodelphis domestica (gray opossum) ENSMMUP00000017204 Macaca mulatta (rhesus monkey) ENSMUSP00000026888 Mus musculus (house mouse) ENSOANP00000024297 Ornithorynchus anatinus (platypus) ENSORLP00000004840 Oryzias latipes (japanese killifish) PHUM009339-PA Pediculus humanus (human body louse) ENSPPYP00000002407 Pongo pygmaeus (orangutan) ENSPTRP00000003857 Pan troglodytes (chimpanzee) ENSRNOP00000025993 Rattus norvegicus (norway rat) Smp_127180 Schistosoma mansoni (trematode parasite) XP_797041.2 Strongylocentrotus purpuratus (purple sea urchin) XP_001814148.1 Tribolium castaneum (red flour beetle) ENSTNIP00000019097 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000043296 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000003954 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV24089 LH10809 FBgn0232117 FBgn0215702 FBgn0201365 FBgn0187142 FBgn0045539 FBgn0181633 JGI_V11_319993 FBgn0075207 FBgn0155779 FBgn0136848 FBgn0131386 FBgn0108678 FBgn0099829 CPIJ014289 BGIBMGA010005 ACYPI008308 ACYPI002409 GB16554 GB10873 AGAP000189 AAEL010862 AAEL010857 PB19718 PHUM409440 GLEAN_14217
Stocks & Reagents
Stocks Listed in FlyBase ( 7 )
Bloomington	26878 y1 w*; P{UAS-bip2.P}2 26880 y1 w*; P{UAS-bip2.P}3 26879 y1 w*; bip24/In(4)ciD, ciD panciD 30942 y1; Mi{MIC}bip2MI00014/In(4)ciD, ciD panciD
VDRC	v107591 P{KK102931}VIE-260B v48036 w1118; P{GD4163}v48036 v48037 w1118; P{GD4163}v48037/CyO
Genomic Clones ( 2 )
	BACH57F14 BACR30L17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 112 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM10839 LD19767 LD24176 RE58915
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT11829 GM02418 LD02843 LD15321 LP05832 RE10870 RE20212 RE20517 RE33550 RE40216 RE51582 RE53591 RE53610 RE54032 RH03115
Other clones	29811 33671 34462 38822 44260 55976 56996 59719 59783 65177 65929 72633 80537 81311 97440 100259 107206 117533 121947 124694 147784 147813 148844 164724 166762 214411.16 214443.13 214565.9 522417 CK01.2C.C12 CK01.8A.F5 CK01.11C.A6 CK01.16A.D4 CK01.31C.E6 CK01.32B.H12 CK01.56D.F1 CK01.61A.D1 CK01.81C.A10 CK01.83C.G4 CK01.93D.F4 CK01.112D.F8 CK01.117C.E11 Dmel_neb_009258_0143_1432 EC30496 EC33520 EC34189 EC39564 EC051694 EC052170 EC053683 EC054189 EC055738 EK006820 EK010923 EK027862 EK045821 EK054612 EK063713 EK064135 EK066658 EK073154 EK139253 EK148748 EK151862 EK159459 EK165253 EK165749 EK165938 EK170310 EK184545 EK187707 EK190916 EK191830 EK193319 EK201743 EK213643 EK219859 EK236538 EK242144 EK247130 EK253130 EK253362 EK255263 EK269048 EK271936 EN01963 EP02334 EP05063 EP19233 FGH123B08 FGM215F12 FGM219G08 UUGC0224
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0026262 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43793
Antibody Information
	polyclonal (Gangloff et al., 2001)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: bip2 CG2009 (Zhong, 1999.11)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_143666 RefSeq (Proteins) • NP_651923 DDBJ / EMBL / GenBank • AA440467 AA540312 AA736037 AA817654 AAF59342 AAL28824 AAL39421 AAM50790 AI257456 AI455431 AJ251945 AJ292191 AW941356 AW942542 AY061276 AY069276 AY118930 CAB40628 CAB64265 CAC34474 Y14999 Entrez Gene - A searchable database of RefSeq genes. • 43793 UniProtKB/TrEMBL • Q8MSB9 Q8T9I5 Q9U1I0 Q9V4D4 Q9XZU7 Q95RM4
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, PHD-type (IPR001965) Bromodomain transcription factor (IPR006565) Zinc finger, FYVE/PHD-type (IPR011011) Zinc finger, PHD-type, conserved site (IPR019786) Zinc finger, PHD-finger (IPR019787) Zinc finger, RING/FYVE/PHD-type (IPR013083)
Linkouts
	BioGRID - A database of protein and genetic interactions • 68626 DroID - A comprehensive database of gene and protein interactions. • FBgn0026262 DRSC - Results from RNAi screens. • FBgn0026262 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0026262 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG2009-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0026262 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43793 InParanoid A subset of ortholog calls from InParanoid. • AAEL010857-PA Aedes aegypti (mosquito) AGAP000189-PA Anopheles gambiae (mosquito) XP_001945181.1 Acyrthosiphon pisum (pea aphid) 98089 Branchiostoma floridae (lancelet) BGIBMGA010005-PA Bombyx mori (silk worm) ENSBTAP00000003674 Bos taurus (bovine) CN25944 Caenorhabditis brenneri (small nematode) CBP07856 Caenorhabditis briggsae (nematode) JA16463 Caenorhabditis japonica (nematode) ENSCPOP00000001758 Cavia porcellus (guinea pig) 319993 Daphnia pulex (daphnia) ENSDARP00000066928 Danio rerio (zebra fish) ENSECAP00000016148 Equus caballus (horse) ENSGALP00000010875 Gallus gallus (chicken) ENSP00000340271 Homo sapiens (human) ENSMODP00000035095 Monodelphis domestica (gray opossum) ENSMMUP00000017204 Macaca mulatta (rhesus monkey) ENSMUSP00000026888 Mus musculus (house mouse) ENSOANP00000024297 Ornithorynchus anatinus (platypus) ENSORLP00000004840 Oryzias latipes (japanese killifish) PHUM009339-PA Pediculus humanus (human body louse) ENSPPYP00000002407 Pongo pygmaeus (orangutan) ENSPTRP00000003857 Pan troglodytes (chimpanzee) ENSRNOP00000025993 Rattus norvegicus (norway rat) Smp_127180 Schistosoma mansoni (trematode parasite) XP_797041.2 Strongylocentrotus purpuratus (purple sea urchin) XP_001814148.1 Tribolium castaneum (red flour beetle) ENSTNIP00000019097 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000043296 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000003954 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43793 modMine - Data generated by the modENCODE project. • FBgn0026262 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV24089 LH10809 FBgn0232117 FBgn0215702 FBgn0201365 FBgn0187142 FBgn0045539 FBgn0181633 JGI_V11_319993 FBgn0075207 FBgn0155779 FBgn0136848 FBgn0131386 FBgn0108678 FBgn0099829 CPIJ014289 BGIBMGA010005 ACYPI008308 ACYPI002409 GB16554 GB10873 AGAP000189 AAEL010862 AAEL010857 PB19718 PHUM409440 GLEAN_14217
Synonyms & Secondary IDs ( 20 )
Reported As
Symbol Synonym	BIP2 (Tora, 2002, Kramps et al., 2002, Aoyagi and Wassarman, 2000, Prince et al., 2008, Bereczki et al., 2008) bip2 (Blanco et al., 2010, Riddle et al., 2008, Prince et al., 2008, Prince, 2009.6.21, Yatsu et al., 2008) Bip2 (Bienz, 2006) bip-II (Pointud et al., 1999) CG2009 (Battersby et al., 2003, Aoyagi and Wassarman, 2000, Bienz, 2006, Keleman et al., 2009.8.5) dBIP2 (Veenstra and Wolffe, 2001) DmTAF3 (Bereczki et al., 2008) dmTAF3 (Chopra et al., 2008) dTAFII155 (Veenstra and Wolffe, 2001) dTAFII3 (Prince et al., 2008) i31 (Battersby et al., 2003) i163 (Battersby et al., 2003) TAF3 (Tora, 2002, Couderc et al., 2005, Weake et al., 2009, Vorobyeva et al., 2009) TAF155 (Bienz, 2006) TAFII155 (Tora, 2002) TAFII155 (Davidson, 2001.1.18, Prince et al., 2008) TFIID (Butler and Kadonaga, 2002, Hochheimer et al., 2002, Gu et al., 2002, Stathopoulos and Levine, 2002, Zhou, 2005)
Name Synonym	bip2   bric-a-brac interacting protein 2 (Prince et al., 2008) Bric-a-brac interacting protein 2 (Prince et al., 2008, Bereczki et al., 2008) TATA binding protein associated factor 3 (Bereczki et al., 2008)
Secondary FlyBase IDs
References ( 46 )
Generate a list of	All references relating to this gene ( 46 )
List References by type	Research paper  ( 21 ) Supplementary material  ( 4 ) Review  ( 6 ) Personal communication to FlyBase  ( 6 ) Abstract  ( 4 ) DNA/RNA sequence record  ( 2 ) Curated genome annotation  ( 1 ) Computer file  ( 1 )
Recent research papers ( 3 )
	Dottorini et al., 2011, BMC Bioinformatics 12: 34 Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis. [FBrf0214379] Hudry et al., 2011, BMC Biol. 9: 5 Visualization of protein interactions in living Drosophila embryos by the bimolecular fluorescence complementation assay. [FBrf0213066] Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2010 Show reviews ...