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Gene Dmel\UbcD10

General Information
Symbol	Dmel\UbcD10	Species	D. melanogaster
Name	Ubiquitin conjugating enzyme 10	Annotation symbol	CG5788
Feature type	protein_coding_gene	FlyBase ID	FBgn0026316
Gene Model Status	Current	Stock availability	10 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	54E9-54E9	Sequence location	2R:13,675,917..13,676,915 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Ubiquitin conjugating enzyme 10 is referred to in FlyBase by the symbol Dmel\UbcD10 (CG5788, FBgn0026316). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding. There is experimental evidence that it is involved in the biological process: neurogenesis. 8 alleles are reported. The phenotypes of these alleles are annotated with: trichogen cell; mesothoracic tergum. It has one annotated transcript and one annotated polypeptide. Protein features are: Ubiquitin-conjugating enzyme, E2; Ubiquitin-conjugating enzyme, active site; Ubiquitin-conjugating enzyme/RWD-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1634533_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of UbcD10. Gene sequence location is 2R:13675917..13676915.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 54E9-54E9   Limits computationally determined from genome sequence between P{EP}subEP616 and P{PZ}grh06850&P{lacW}olf186-Fk11505
Experimentally Determined Cytological Location
Cytogenetic map Notes References 54E8-54F4     (Aguilera, 1999.4.5)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\UbcD10 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) UbcD10-RA FBtr0089553  NM_058066   999   154
Additional Transcript Data & Comments
Reported size (kB)	0.987 (longest cDNA) (Aguilera et al., 2000)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein UbcD10-PA   FBpp0088522   17.9   154   8.99     NP_477414   AAF57787
Additional Polypeptide Data & Comments
Reported size (kDa)	154 (aa) (Aguilera et al., 2000)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ubiquitin-conjugating enzyme, E2 (IPR000608) Ubiquitin-conjugating enzyme/RWD-like (IPR016135) Ubiquitin-conjugating enzyme, active site (IPR023313)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA391349   AA697161   AA802511   AA949779   AA950429   AE013599 AAF57787   AC091500   AI062871   AI258521   AI258582   AI260585   AI297376   AJ238007 CAB40790   AL035311 CAA22948   AY231700   AY232251   AZ877665   BG638584   BI213011   BI243872   BI361599   BI362648   BI374659   BI375162   BI608322   BI608687   BI635211   BI635996   BI639208   BP545441   BP549964   BP555457   BP557689   BT012459   CK657891   CL632172   CO153807   CO263897   CO272969   CO273187   CO278637   CO279444   CO289769   CO308016   CO321831   CO322100   CZ471799   EC060719   EC060817   EC074103   EC084146   EC085923   EC086713   EC220786   EC232419   EC233406   EC242212   EC246228   EC249520   EC266396   GH749688   GH753691   GH753961   GH755325   GH756945   GH757828   GH770821   GH779027   GH787289   GH787936   GH798231   GH800159   GH804743   GH806016   GH807710   GH813114   GH816273   GH816480   GH817100   GH820287   GH820346   GH821831   GH823420   GH823980   GH824490   GH826806   GH829145   GH831003   GH834027   GH834455   GH835059   GH836509   GH844898   GH851823   GH854717   GH860005   GH863320   GH866668   GH866854   GH867862   GH868637   GH871010   GH871626   GH876691   GH880429   GH886402   GH886963   GH887301   GH887955   GH888882   GH900577   GH901843   GH912675   GH915101   GH919610   GH919725   GH919936   GH921796   GH922242   GH923253   GH924102   GH933234   GH942344
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q7K738
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    374.6 Larval Midgut    324 Larval Hindgut    407.4 Larval Malpighian Tubules    374.2 Larval Fat Body    246.9 Larval Salivary Gland    401.4 Larval Trachea    376.45 Larval Carcass    451.975 Adult Head    358.9 Adult Eye    479.9 Adult Brain    468.8 Adult Thoracic-Abdominal Ganglion    310.5 Adult Crop    272 Adult Midgut    302.7 Adult Hindgut    326.6 Adult Malpighian Tubules    273.8 Adult Fat Body    225.6 Adult Salivary Gland    477.5 Adult Heart    235.875 Adult VirginFemale Spermatheca    129.4 Adult InseminatedFemale Spermatheca    108.3 Adult Ovary    385.4 Adult Testis    269.8 Adult Male Accessory Gland    267.9 Adult Carcass    250 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    374.6 Larval Midgut    324 Larval Hindgut    407.4 Larval Malpighian Tubules    374.2 Larval Fat Body    246.9 Larval Salivary Gland    401.4 Larval Trachea    376.45 Larval Carcass    451.975 Adult Head    358.9 Adult Eye    479.9 Adult Brain    468.8 Adult Thoracic-Abdominal Ganglion    310.5 Adult Crop    272 Adult Midgut    302.7 Adult Hindgut    326.6 Adult Malpighian Tubules    273.8 Adult Fat Body    225.6 Adult Salivary Gland    477.5 Adult Heart    235.875 Adult VirginFemale Spermatheca    129.4 Adult InseminatedFemale Spermatheca    108.3 Adult Ovary    385.4 Adult Testis    269.8 Adult Male Accessory Gland    267.9 Adult Carcass    250 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    374.6 Larval Midgut    324 Larval Hindgut    407.4 Larval Malpighian Tubules    374.2 Larval Fat Body    246.9 Larval Salivary Gland    401.4 Larval Trachea    376.45 Larval Carcass    451.975 Adult Head    358.9 Adult Eye    479.9 Adult Brain    468.8 Adult Thoracic-Abdominal Ganglion    310.5 Adult Crop    272 Adult Midgut    302.7 Adult Hindgut    326.6 Adult Malpighian Tubules    273.8 Adult Fat Body    225.6 Adult Salivary Gland    477.5 Adult Heart    235.875 Adult VirginFemale Spermatheca    129.4 Adult InseminatedFemale Spermatheca    108.3 Adult Ovary    385.4 Adult Testis    269.8 Adult Male Accessory Gland    267.9 Adult Carcass    250 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    374.6 Larval Midgut    324 Larval Hindgut    407.4 Larval Malpighian Tubules    374.2 Larval Fat Body    246.9 Larval Salivary Gland    401.4 Larval Trachea    376.45 Larval Carcass    451.975 Adult Head    358.9 Adult Eye    479.9 Adult Brain    468.8 Adult Thoracic-Abdominal Ganglion    310.5 Adult Crop    272 Adult Midgut    302.7 Adult Hindgut    326.6 Adult Malpighian Tubules    273.8 Adult Fat Body    225.6 Adult Salivary Gland    477.5 Adult Heart    235.875 Adult VirginFemale Spermatheca    129.4 Adult InseminatedFemale Spermatheca    108.3 Adult Ovary    385.4 Adult Testis    269.8 Adult Male Accessory Gland    267.9 Adult Carcass    250 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    374.6 Larval Midgut    324 Larval Hindgut    407.4 Larval Malpighian Tubules    374.2 Larval Fat Body    246.9 Larval Salivary Gland    401.4 Larval Trachea    376.45 Larval Carcass    451.975 Adult Head    358.9 Adult Eye    479.9 Adult Brain    468.8 Adult Thoracic-Abdominal Ganglion    310.5 Adult Crop    272 Adult Midgut    302.7 Adult Hindgut    326.6 Adult Malpighian Tubules    273.8 Adult Fat Body    225.6 Adult Salivary Gland    477.5 Adult Heart    235.875 Adult VirginFemale Spermatheca    129.4 Adult InseminatedFemale Spermatheca    108.3 Adult Ovary    385.4 Adult Testis    269.8 Adult Male Accessory Gland    267.9 Adult Carcass    250 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    374.6 Larval Midgut    324 Larval Hindgut    407.4 Larval Malpighian Tubules    374.2 Larval Fat Body    246.9 Larval Salivary Gland    401.4 Larval Trachea    376.45 Larval Carcass    451.975 Adult Head    358.9 Adult Eye    479.9 Adult Brain    468.8 Adult Thoracic-Abdominal Ganglion    310.5 Adult Crop    272 Adult Midgut    302.7 Adult Hindgut    326.6 Adult Malpighian Tubules    273.8 Adult Fat Body    225.6 Adult Salivary Gland    477.5 Adult Heart    235.875 Adult VirginFemale Spermatheca    129.4 Adult InseminatedFemale Spermatheca    108.3 Adult Ovary    385.4 Adult Testis    269.8 Adult Male Accessory Gland    267.9 Adult Carcass    250 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    374.6 Larval Midgut    324 Larval Hindgut    407.4 Larval Malpighian Tubules    374.2 Larval Fat Body    246.9 Larval Salivary Gland    401.4 Larval Trachea    376.45 Larval Carcass    451.975 Adult Head    358.9 Adult Eye    479.9 Adult Brain    468.8 Adult Thoracic-Abdominal Ganglion    310.5 Adult Crop    272 Adult Midgut    302.7 Adult Hindgut    326.6 Adult Malpighian Tubules    273.8 Adult Fat Body    225.6 Adult Salivary Gland    477.5 Adult Heart    235.875 Adult VirginFemale Spermatheca    129.4 Adult InseminatedFemale Spermatheca    108.3 Adult Ovary    385.4 Adult Testis    269.8 Adult Male Accessory Gland    267.9 Adult Carcass    250 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    374.6 Larval Midgut    324 Larval Hindgut    407.4 Larval Malpighian Tubules    374.2 Larval Fat Body    246.9 Larval Salivary Gland    401.4 Larval Trachea    376.45 Larval Carcass    451.975 Adult Head    358.9 Adult Eye    479.9 Adult Brain    468.8 Adult Thoracic-Abdominal Ganglion    310.5 Adult Crop    272 Adult Midgut    302.7 Adult Hindgut    326.6 Adult Malpighian Tubules    273.8 Adult Fat Body    225.6 Adult Salivary Gland    477.5 Adult Heart    235.875 Adult VirginFemale Spermatheca    129.4 Adult InseminatedFemale Spermatheca    108.3 Adult Ovary    385.4 Adult Testis    269.8 Adult Male Accessory Gland    267.9 Adult Carcass    250 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    358.9   NA  Eye    479.9   NA  Brain    468.8   374.6  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    310.5   NA  Crop    272   324  Midgut    302.7   407.4  Hindgut    326.6   374.2  Malpighian Tubules    273.8   246.9  Fat Body    225.6   401.4  Salivary Gland    477.5   NA  Heart    235.875   376.45  Trachea    NA   NA  VirginFemale Spermatheca    129.4   NA  InseminatedFemale Spermatheca    108.3   NA  Ovary    385.4   NA  Testis    269.8   NA  Male Accessory Gland    267.9   451.975  Carcass    250 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    80 central nervous system, larvae L3    81 central nervous system, pupae P8    50 head, virgin 1-day female    48 head, virgin 4-day female    53 head, virgin 20-day female    41 head, mated 1-day female    54 head, mated 4-day female    35 head, mated 20-day female    37 head, mated 1-day male    81 head, mated 4-day male    56 head, mated 20-day male    66 salivary gland, larvae L3 wandering    38 salivary gland, white prepupae    122 digestive system, larvae L3 wandering    100 digestive system, 1-day adult    51 digestive system, 4-day adult    39 digestive system, 20-day adult    39 fat body, larvae L3 wandering    28 fat body, white prepupae    69 fat body, pupae P8    87 carcass, larvae L3 wandering    89 carcass, 1-day adult    46 carcass, 4-day adult    38 carcass, 20-day adult    51 ovary, virgin 4-day female    97 ovary, mated 4-day female    99 testis, mated 4-day male    98 accessory gland, mated 4-day male    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (80) central nervous system, larvae L3  (81) central nervous system, pupae P8  (50) head, virgin 1-day female  (48) head, virgin 4-day female  (53) head, virgin 20-day female  (41) head, mated 1-day female  (54) head, mated 4-day female  (35) head, mated 20-day female  (37) head, mated 1-day male  (81) head, mated 4-day male  (56) head, mated 20-day male  (66) salivary gland, larvae L3 wandering  (38) salivary gland, white prepupae  (122) digestive system, larvae L3 wandering  (100) digestive system, 1-day adult  (51) digestive system, 4-day adult  (39) digestive system, 20-day adult  (39) fat body, larvae L3 wandering  (28) fat body, white prepupae  (69) fat body, pupae P8  (87) carcass, larvae L3 wandering  (89) carcass, 1-day adult  (46) carcass, 4-day adult  (38) carcass, 20-day adult  (51) ovary, virgin 4-day female  (97) ovary, mated 4-day female  (99) testis, mated 4-day male  (98) accessory gland, mated 4-day male  (57) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    80 central nervous system, larvae L3    81 central nervous system, pupae P8    50 head, virgin 1-day female    48 head, virgin 4-day female    53 head, virgin 20-day female    41 head, mated 1-day female    54 head, mated 4-day female    35 head, mated 20-day female    37 head, mated 1-day male    81 head, mated 4-day male    56 head, mated 20-day male    66 salivary gland, larvae L3 wandering    38 salivary gland, white prepupae  (122) digestive system, larvae L3 wandering    100 digestive system, 1-day adult    51 digestive system, 4-day adult    39 digestive system, 20-day adult    39 fat body, larvae L3 wandering    28 fat body, white prepupae    69 fat body, pupae P8    87 carcass, larvae L3 wandering    89 carcass, 1-day adult    46 carcass, 4-day adult    38 carcass, 20-day adult    51 ovary, virgin 4-day female    97 ovary, mated 4-day female    99 testis, mated 4-day male    98 accessory gland, mated 4-day male    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    80 central nervous system, larvae L3    81 central nervous system, pupae P8    50 head, virgin 1-day female    48 head, virgin 4-day female    53 head, virgin 20-day female    41 head, mated 1-day female    54 head, mated 4-day female    35 head, mated 20-day female    37 head, mated 1-day male    81 head, mated 4-day male    56 head, mated 20-day male    66 salivary gland, larvae L3 wandering    38 salivary gland, white prepupae    122 digestive system, larvae L3 wandering    100 digestive system, 1-day adult    51 digestive system, 4-day adult    39 digestive system, 20-day adult    39 fat body, larvae L3 wandering    28 fat body, white prepupae    69 fat body, pupae P8    87 carcass, larvae L3 wandering    89 carcass, 1-day adult    46 carcass, 4-day adult    38 carcass, 20-day adult    51 ovary, virgin 4-day female    97 ovary, mated 4-day female    99 testis, mated 4-day male    98 accessory gland, mated 4-day male    57 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    80 central nervous system, larvae L3    81 central nervous system, pupae P8    50 head, virgin 1-day female    48 head, virgin 4-day female    53 head, virgin 20-day female    41 head, mated 1-day female    54 head, mated 4-day female    35 head, mated 20-day female    37 head, mated 1-day male    81 head, mated 4-day male    56 head, mated 20-day male    66 salivary gland, larvae L3 wandering    38 salivary gland, white prepupae    122 digestive system, larvae L3 wandering    100 digestive system, 1-day adult    51 digestive system, 4-day adult    39 digestive system, 20-day adult    39 fat body, larvae L3 wandering    28 fat body, white prepupae    69 fat body, pupae P8    87 carcass, larvae L3 wandering    89 carcass, 1-day adult    46 carcass, 4-day adult    38 carcass, 20-day adult    51 ovary, virgin 4-day female    97 ovary, mated 4-day female    99 testis, mated 4-day male    98 accessory gland, mated 4-day male    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (80) central nervous system, larvae L3  (81) central nervous system, pupae P8  (50) head, virgin 1-day female  (48) head, virgin 4-day female  (53) head, virgin 20-day female  (41) head, mated 1-day female  (54) head, mated 4-day female  (35) head, mated 20-day female  (37) head, mated 1-day male  (81) head, mated 4-day male  (56) head, mated 20-day male  (66) salivary gland, larvae L3 wandering  (38) salivary gland, white prepupae  (122) digestive system, larvae L3 wandering  (100) digestive system, 1-day adult  (51) digestive system, 4-day adult  (39) digestive system, 20-day adult  (39) fat body, larvae L3 wandering  28 fat body, white prepupae  (69) fat body, pupae P8  (87) carcass, larvae L3 wandering  (89) carcass, 1-day adult  (46) carcass, 4-day adult  (38) carcass, 20-day adult  (51) ovary, virgin 4-day female  (97) ovary, mated 4-day female  (99) testis, mated 4-day male  (98) accessory gland, mated 4-day male  (57) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    80 central nervous system, larvae L3    81 central nervous system, pupae P8    50 head, virgin 1-day female    48 head, virgin 4-day female    53 head, virgin 20-day female    41 head, mated 1-day female    54 head, mated 4-day female    35 head, mated 20-day female    37 head, mated 1-day male    81 head, mated 4-day male    56 head, mated 20-day male    66 salivary gland, larvae L3 wandering    38 salivary gland, white prepupae  122 digestive system, larvae L3 wandering    100 digestive system, 1-day adult    51 digestive system, 4-day adult    39 digestive system, 20-day adult    39 fat body, larvae L3 wandering    28 fat body, white prepupae    69 fat body, pupae P8    87 carcass, larvae L3 wandering    89 carcass, 1-day adult    46 carcass, 4-day adult    38 carcass, 20-day adult    51 ovary, virgin 4-day female    97 ovary, mated 4-day female    99 testis, mated 4-day male    98 accessory gland, mated 4-day male    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    80 central nervous system, larvae L3    81 central nervous system, pupae P8    50 head, virgin 1-day female    48 head, virgin 4-day female    53 head, virgin 20-day female    41 head, mated 1-day female    54 head, mated 4-day female    35 head, mated 20-day female    37 head, mated 1-day male    81 head, mated 4-day male    56 head, mated 20-day male    66 salivary gland, larvae L3 wandering    38 salivary gland, white prepupae    122 digestive system, larvae L3 wandering    100 digestive system, 1-day adult    51 digestive system, 4-day adult    39 digestive system, 20-day adult    39 fat body, larvae L3 wandering    28 fat body, white prepupae    69 fat body, pupae P8    87 carcass, larvae L3 wandering    89 carcass, 1-day adult    46 carcass, 4-day adult    38 carcass, 20-day adult    51 ovary, virgin 4-day female    97 ovary, mated 4-day female    99 testis, mated 4-day male    98 accessory gland, mated 4-day male    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    126 embryo 02-04hr    96 embryo 04-06hr    64 embryo 06-08hr    52 embryo 08-10hr    51 embryo 10-12hr    50 embryo 12-14hr    37 embryo 14-16hr    43 embryo 16-18hr    36 embryo 18-20hr    24 embryo 20-22hr    50 embryo 22-24hr    45 larva L1    59 larva L2    59 larva L3 12hr old    46 larva L3 puffstage 1-2    56 larva L3 puffstage 3-6    67 larva L3 puffstage 7-9    111 white prepupae new    154 white prepupae 12hr    83 white prepupae 24hr    76 pupae 2d postWPP    77 pupae 3d postWPP    63 pupae 4d postWPP    42 adult male 01day    67 adult male 05day    66 adult male 30day    61 adult female 01day    69 adult female 05day    90 adult female 30day    96 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (126) embryo 02-04hr  (96) embryo 04-06hr  (64) embryo 06-08hr  (52) embryo 08-10hr  (51) embryo 10-12hr  (50) embryo 12-14hr  (37) embryo 14-16hr  (43) embryo 16-18hr  (36) embryo 18-20hr    24 embryo 20-22hr  (50) embryo 22-24hr  (45) larva L1  (59) larva L2  (59) larva L3 12hr old  (46) larva L3 puffstage 1-2  (56) larva L3 puffstage 3-6  (67) larva L3 puffstage 7-9  (111) white prepupae new  (154) white prepupae 12hr  (83) white prepupae 24hr  (76) pupae 2d postWPP  (77) pupae 3d postWPP  (63) pupae 4d postWPP  (42) adult male 01day  (67) adult male 05day  (66) adult male 30day  (61) adult female 01day  (69) adult female 05day  (90) adult female 30day  (96) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (126) embryo 02-04hr    96 embryo 04-06hr    64 embryo 06-08hr    52 embryo 08-10hr    51 embryo 10-12hr    50 embryo 12-14hr    37 embryo 14-16hr    43 embryo 16-18hr    36 embryo 18-20hr    24 embryo 20-22hr    50 embryo 22-24hr    45 larva L1    59 larva L2    59 larva L3 12hr old    46 larva L3 puffstage 1-2    56 larva L3 puffstage 3-6    67 larva L3 puffstage 7-9  (111) white prepupae new  (154) white prepupae 12hr    83 white prepupae 24hr    76 pupae 2d postWPP    77 pupae 3d postWPP    63 pupae 4d postWPP    42 adult male 01day    67 adult male 05day    66 adult male 30day    61 adult female 01day    69 adult female 05day    90 adult female 30day    96 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    126 embryo 02-04hr    96 embryo 04-06hr    64 embryo 06-08hr    52 embryo 08-10hr    51 embryo 10-12hr    50 embryo 12-14hr    37 embryo 14-16hr    43 embryo 16-18hr    36 embryo 18-20hr    24 embryo 20-22hr    50 embryo 22-24hr    45 larva L1    59 larva L2    59 larva L3 12hr old    46 larva L3 puffstage 1-2    56 larva L3 puffstage 3-6    67 larva L3 puffstage 7-9    111 white prepupae new    154 white prepupae 12hr    83 white prepupae 24hr    76 pupae 2d postWPP    77 pupae 3d postWPP    63 pupae 4d postWPP    42 adult male 01day    67 adult male 05day    66 adult male 30day    61 adult female 01day    69 adult female 05day    90 adult female 30day    96 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    126 embryo 02-04hr    96 embryo 04-06hr    64 embryo 06-08hr    52 embryo 08-10hr    51 embryo 10-12hr    50 embryo 12-14hr    37 embryo 14-16hr    43 embryo 16-18hr    36 embryo 18-20hr    24 embryo 20-22hr    50 embryo 22-24hr    45 larva L1    59 larva L2    59 larva L3 12hr old    46 larva L3 puffstage 1-2    56 larva L3 puffstage 3-6    67 larva L3 puffstage 7-9    111 white prepupae new    154 white prepupae 12hr    83 white prepupae 24hr    76 pupae 2d postWPP    77 pupae 3d postWPP    63 pupae 4d postWPP    42 adult male 01day    67 adult male 05day    66 adult male 30day    61 adult female 01day    69 adult female 05day    90 adult female 30day    96 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (126) embryo 02-04hr  (96) embryo 04-06hr  (64) embryo 06-08hr  (52) embryo 08-10hr  (51) embryo 10-12hr  (50) embryo 12-14hr  (37) embryo 14-16hr  (43) embryo 16-18hr  (36) embryo 18-20hr    24 embryo 20-22hr  (50) embryo 22-24hr  (45) larva L1  (59) larva L2  (59) larva L3 12hr old  (46) larva L3 puffstage 1-2  (56) larva L3 puffstage 3-6  (67) larva L3 puffstage 7-9  (111) white prepupae new  (154) white prepupae 12hr  (83) white prepupae 24hr  (76) pupae 2d postWPP  (77) pupae 3d postWPP  (63) pupae 4d postWPP  (42) adult male 01day  (67) adult male 05day  (66) adult male 30day  (61) adult female 01day  (69) adult female 05day  (90) adult female 30day  (96) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  126 embryo 02-04hr    96 embryo 04-06hr    64 embryo 06-08hr    52 embryo 08-10hr    51 embryo 10-12hr    50 embryo 12-14hr    37 embryo 14-16hr    43 embryo 16-18hr    36 embryo 18-20hr    24 embryo 20-22hr    50 embryo 22-24hr    45 larva L1    59 larva L2    59 larva L3 12hr old    46 larva L3 puffstage 1-2    56 larva L3 puffstage 3-6    67 larva L3 puffstage 7-9  111 white prepupae new  (154) white prepupae 12hr    83 white prepupae 24hr    76 pupae 2d postWPP    77 pupae 3d postWPP    63 pupae 4d postWPP    42 adult male 01day    67 adult male 05day    66 adult male 30day    61 adult female 01day    69 adult female 05day    90 adult female 30day    96 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    126 embryo 02-04hr    96 embryo 04-06hr    64 embryo 06-08hr    52 embryo 08-10hr    51 embryo 10-12hr    50 embryo 12-14hr    37 embryo 14-16hr    43 embryo 16-18hr    36 embryo 18-20hr    24 embryo 20-22hr    50 embryo 22-24hr    45 larva L1    59 larva L2    59 larva L3 12hr old    46 larva L3 puffstage 1-2    56 larva L3 puffstage 3-6    67 larva L3 puffstage 7-9    111 white prepupae new    154 white prepupae 12hr    83 white prepupae 24hr    76 pupae 2d postWPP    77 pupae 3d postWPP    63 pupae 4d postWPP    42 adult male 01day    67 adult male 05day    66 adult male 30day    61 adult female 01day    69 adult female 05day    90 adult female 30day    96 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    90 Schneider line 2 Sg4    69 embryonic 1182-4H    49 embryonic GM2    49 embryonic Kc167    33 embryonic S1    67 embryonic S3    66 leg disc CME L1    80 wing disc CME-W2    65 wing disc ML-DmD8    38 wing disc ML-DmD9    56 wing disc ML-DmD16-c3    52 wing disc ML-DmD21    104 wing disc ML-DmD32    53 haltere disc ML-DmD17-c3    57 eye-antennal disc ML-DmD11    46 antennal disc ML-DmD20-c5    72 mixed discs ML-DmD4-c1    61 CNS ML-DmBG1-c1    74 CNS ML-DmBG2-c2    65 tumorous blood cells mbn2    63 ovary fGS/OSS    50 ovary OSC    71 ovary OSS    34 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (90) Schneider line 2 Sg4  (69) embryonic 1182-4H  (49) embryonic GM2  (49) embryonic Kc167  (33) embryonic S1  (67) embryonic S3  (66) leg disc CME L1  (80) wing disc CME-W2  (65) wing disc ML-DmD8  (38) wing disc ML-DmD9  (56) wing disc ML-DmD16-c3  (52) wing disc ML-DmD21  (104) wing disc ML-DmD32  (53) haltere disc ML-DmD17-c3  (57) eye-antennal disc ML-DmD11  (46) antennal disc ML-DmD20-c5  (72) mixed discs ML-DmD4-c1  (61) CNS ML-DmBG1-c1  (74) CNS ML-DmBG2-c2  (65) tumorous blood cells mbn2  (63) ovary fGS/OSS  (50) ovary OSC  (71) ovary OSS  (34) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    90 Schneider line 2 Sg4    69 embryonic 1182-4H    49 embryonic GM2    49 embryonic Kc167    33 embryonic S1    67 embryonic S3    66 leg disc CME L1    80 wing disc CME-W2    65 wing disc ML-DmD8    38 wing disc ML-DmD9    56 wing disc ML-DmD16-c3    52 wing disc ML-DmD21  104 wing disc ML-DmD32    53 haltere disc ML-DmD17-c3    57 eye-antennal disc ML-DmD11    46 antennal disc ML-DmD20-c5    72 mixed discs ML-DmD4-c1    61 CNS ML-DmBG1-c1    74 CNS ML-DmBG2-c2    65 tumorous blood cells mbn2    63 ovary fGS/OSS    50 ovary OSC    71 ovary OSS    34 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    90 Schneider line 2 Sg4    69 embryonic 1182-4H    49 embryonic GM2    49 embryonic Kc167    33 embryonic S1    67 embryonic S3    66 leg disc CME L1    80 wing disc CME-W2    65 wing disc ML-DmD8    38 wing disc ML-DmD9    56 wing disc ML-DmD16-c3    52 wing disc ML-DmD21    104 wing disc ML-DmD32    53 haltere disc ML-DmD17-c3    57 eye-antennal disc ML-DmD11    46 antennal disc ML-DmD20-c5    72 mixed discs ML-DmD4-c1    61 CNS ML-DmBG1-c1    74 CNS ML-DmBG2-c2    65 tumorous blood cells mbn2    63 ovary fGS/OSS    50 ovary OSC    71 ovary OSS    34 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    90 Schneider line 2 Sg4    69 embryonic 1182-4H    49 embryonic GM2    49 embryonic Kc167    33 embryonic S1    67 embryonic S3    66 leg disc CME L1    80 wing disc CME-W2    65 wing disc ML-DmD8    38 wing disc ML-DmD9    56 wing disc ML-DmD16-c3    52 wing disc ML-DmD21    104 wing disc ML-DmD32    53 haltere disc ML-DmD17-c3    57 eye-antennal disc ML-DmD11    46 antennal disc ML-DmD20-c5    72 mixed discs ML-DmD4-c1    61 CNS ML-DmBG1-c1    74 CNS ML-DmBG2-c2    65 tumorous blood cells mbn2    63 ovary fGS/OSS    50 ovary OSC    71 ovary OSS    34 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (90) Schneider line 2 Sg4  (69) embryonic 1182-4H  (49) embryonic GM2  (49) embryonic Kc167  (33) embryonic S1  (67) embryonic S3  (66) leg disc CME L1  (80) wing disc CME-W2  (65) wing disc ML-DmD8  (38) wing disc ML-DmD9  (56) wing disc ML-DmD16-c3  (52) wing disc ML-DmD21  (104) wing disc ML-DmD32  (53) haltere disc ML-DmD17-c3  (57) eye-antennal disc ML-DmD11  (46) antennal disc ML-DmD20-c5  (72) mixed discs ML-DmD4-c1  (61) CNS ML-DmBG1-c1  (74) CNS ML-DmBG2-c2  (65) tumorous blood cells mbn2  (63) ovary fGS/OSS  (50) ovary OSC  (71) ovary OSS  (34) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    90 Schneider line 2 Sg4    69 embryonic 1182-4H    49 embryonic GM2    49 embryonic Kc167    33 embryonic S1    67 embryonic S3    66 leg disc CME L1    80 wing disc CME-W2    65 wing disc ML-DmD8    38 wing disc ML-DmD9    56 wing disc ML-DmD16-c3    52 wing disc ML-DmD21  104 wing disc ML-DmD32    53 haltere disc ML-DmD17-c3    57 eye-antennal disc ML-DmD11    46 antennal disc ML-DmD20-c5    72 mixed discs ML-DmD4-c1    61 CNS ML-DmBG1-c1    74 CNS ML-DmBG2-c2    65 tumorous blood cells mbn2    63 ovary fGS/OSS    50 ovary OSC    71 ovary OSS    34 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    90 Schneider line 2 Sg4    69 embryonic 1182-4H    49 embryonic GM2    49 embryonic Kc167    33 embryonic S1    67 embryonic S3    66 leg disc CME L1    80 wing disc CME-W2    65 wing disc ML-DmD8    38 wing disc ML-DmD9    56 wing disc ML-DmD16-c3    52 wing disc ML-DmD21    104 wing disc ML-DmD32    53 haltere disc ML-DmD17-c3    57 eye-antennal disc ML-DmD11    46 antennal disc ML-DmD20-c5    72 mixed discs ML-DmD4-c1    61 CNS ML-DmBG1-c1    74 CNS ML-DmBG2-c2    65 tumorous blood cells mbn2    63 ovary fGS/OSS    50 ovary OSC    71 ovary OSS    34 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    52 cold shock, 4-day adult    44 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    59 Cadmium 50 mM 12 hrs, larvae L3    77 Cadmium 50 mM 48 hrs, 4-day adult    54 Cadmium 100 mM 48 hrs, 4-day adult    79 Copper 0.5 mM 12 hrs, larvae L3    47 Copper 15 mM 48 hrs, 4-day adult    37 Zinc 5 mM 12 hrs, larvae L3    48 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    57 Ethanol 5% 3 hrs, larvae L3    46 Ethanol 10% 3 hrs, larvae L3    49 Caffeine 1.5 mg/ml 4 hrs, larvae L3    39 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    93 Caffeine 25 mg/ml 48 hrs, 4-day adult    49 Paraquat 5 mM 48 hrs, 4-day adult    76 Paraquat 10 mM 48 hrs, 4-day adult    55 Rotenone 2 μg 12 hrs, larvae L3    55 Rotenone 8 μg 12 hrs, larvae L3    65 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (52) cold shock, 4-day adult  (44) heat shock, 4-day adult  (45) Cadmium 50 mM 6 hrs, larvae L3  (59) Cadmium 50 mM 12 hrs, larvae L3  (77) Cadmium 50 mM 48 hrs, 4-day adult  (54) Cadmium 100 mM 48 hrs, 4-day adult  (79) Copper 0.5 mM 12 hrs, larvae L3  (47) Copper 15 mM 48 hrs, 4-day adult  (37) Zinc 5 mM 12 hrs, larvae L3  (48) Zinc 4.5 mM 48 hrs, 4-day adult  (35) Ethanol 2.5% 3 hrs, larvae L3  (57) Ethanol 5% 3 hrs, larvae L3  (46) Ethanol 10% 3 hrs, larvae L3  (49) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (39) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (93) Caffeine 25 mg/ml 48 hrs, 4-day adult  (49) Paraquat 5 mM 48 hrs, 4-day adult  (76) Paraquat 10 mM 48 hrs, 4-day adult  (55) Rotenone 2 μg 12 hrs, larvae L3  (55) Rotenone 8 μg 12 hrs, larvae L3  (65) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    52 cold shock, 4-day adult    44 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    59 Cadmium 50 mM 12 hrs, larvae L3    77 Cadmium 50 mM 48 hrs, 4-day adult    54 Cadmium 100 mM 48 hrs, 4-day adult    79 Copper 0.5 mM 12 hrs, larvae L3    47 Copper 15 mM 48 hrs, 4-day adult    37 Zinc 5 mM 12 hrs, larvae L3    48 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    57 Ethanol 5% 3 hrs, larvae L3    46 Ethanol 10% 3 hrs, larvae L3    49 Caffeine 1.5 mg/ml 4 hrs, larvae L3    39 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    93 Caffeine 25 mg/ml 48 hrs, 4-day adult    49 Paraquat 5 mM 48 hrs, 4-day adult    76 Paraquat 10 mM 48 hrs, 4-day adult    55 Rotenone 2 μg 12 hrs, larvae L3    55 Rotenone 8 μg 12 hrs, larvae L3    65 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    52 cold shock, 4-day adult    44 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    59 Cadmium 50 mM 12 hrs, larvae L3    77 Cadmium 50 mM 48 hrs, 4-day adult    54 Cadmium 100 mM 48 hrs, 4-day adult    79 Copper 0.5 mM 12 hrs, larvae L3    47 Copper 15 mM 48 hrs, 4-day adult    37 Zinc 5 mM 12 hrs, larvae L3    48 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    57 Ethanol 5% 3 hrs, larvae L3    46 Ethanol 10% 3 hrs, larvae L3    49 Caffeine 1.5 mg/ml 4 hrs, larvae L3    39 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    93 Caffeine 25 mg/ml 48 hrs, 4-day adult    49 Paraquat 5 mM 48 hrs, 4-day adult    76 Paraquat 10 mM 48 hrs, 4-day adult    55 Rotenone 2 μg 12 hrs, larvae L3    55 Rotenone 8 μg 12 hrs, larvae L3    65 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    52 cold shock, 4-day adult    44 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    59 Cadmium 50 mM 12 hrs, larvae L3    77 Cadmium 50 mM 48 hrs, 4-day adult    54 Cadmium 100 mM 48 hrs, 4-day adult    79 Copper 0.5 mM 12 hrs, larvae L3    47 Copper 15 mM 48 hrs, 4-day adult    37 Zinc 5 mM 12 hrs, larvae L3    48 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    57 Ethanol 5% 3 hrs, larvae L3    46 Ethanol 10% 3 hrs, larvae L3    49 Caffeine 1.5 mg/ml 4 hrs, larvae L3    39 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    93 Caffeine 25 mg/ml 48 hrs, 4-day adult    49 Paraquat 5 mM 48 hrs, 4-day adult    76 Paraquat 10 mM 48 hrs, 4-day adult    55 Rotenone 2 μg 12 hrs, larvae L3    55 Rotenone 8 μg 12 hrs, larvae L3    65 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (52) cold shock, 4-day adult  (44) heat shock, 4-day adult  (45) Cadmium 50 mM 6 hrs, larvae L3  (59) Cadmium 50 mM 12 hrs, larvae L3  (77) Cadmium 50 mM 48 hrs, 4-day adult  (54) Cadmium 100 mM 48 hrs, 4-day adult  (79) Copper 0.5 mM 12 hrs, larvae L3  (47) Copper 15 mM 48 hrs, 4-day adult  (37) Zinc 5 mM 12 hrs, larvae L3  (48) Zinc 4.5 mM 48 hrs, 4-day adult  (35) Ethanol 2.5% 3 hrs, larvae L3  (57) Ethanol 5% 3 hrs, larvae L3  (46) Ethanol 10% 3 hrs, larvae L3  (49) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (39) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (93) Caffeine 25 mg/ml 48 hrs, 4-day adult  (49) Paraquat 5 mM 48 hrs, 4-day adult  (76) Paraquat 10 mM 48 hrs, 4-day adult  (55) Rotenone 2 μg 12 hrs, larvae L3  (55) Rotenone 8 μg 12 hrs, larvae L3  (65) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    52 cold shock, 4-day adult    44 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    59 Cadmium 50 mM 12 hrs, larvae L3    77 Cadmium 50 mM 48 hrs, 4-day adult    54 Cadmium 100 mM 48 hrs, 4-day adult    79 Copper 0.5 mM 12 hrs, larvae L3    47 Copper 15 mM 48 hrs, 4-day adult    37 Zinc 5 mM 12 hrs, larvae L3    48 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    57 Ethanol 5% 3 hrs, larvae L3    46 Ethanol 10% 3 hrs, larvae L3    49 Caffeine 1.5 mg/ml 4 hrs, larvae L3    39 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    93 Caffeine 25 mg/ml 48 hrs, 4-day adult    49 Paraquat 5 mM 48 hrs, 4-day adult    76 Paraquat 10 mM 48 hrs, 4-day adult    55 Rotenone 2 μg 12 hrs, larvae L3    55 Rotenone 8 μg 12 hrs, larvae L3    65 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    52 cold shock, 4-day adult    44 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    59 Cadmium 50 mM 12 hrs, larvae L3    77 Cadmium 50 mM 48 hrs, 4-day adult    54 Cadmium 100 mM 48 hrs, 4-day adult    79 Copper 0.5 mM 12 hrs, larvae L3    47 Copper 15 mM 48 hrs, 4-day adult    37 Zinc 5 mM 12 hrs, larvae L3    48 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    57 Ethanol 5% 3 hrs, larvae L3    46 Ethanol 10% 3 hrs, larvae L3    49 Caffeine 1.5 mg/ml 4 hrs, larvae L3    39 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    93 Caffeine 25 mg/ml 48 hrs, 4-day adult    49 Paraquat 5 mM 48 hrs, 4-day adult    76 Paraquat 10 mM 48 hrs, 4-day adult    55 Rotenone 2 μg 12 hrs, larvae L3    55 Rotenone 8 μg 12 hrs, larvae L3    65 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_02 mE1_20_mRNA_expression_cluster_02
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0026316 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5788-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal UbcD10GD11768 UbcD10GD16723 partially lethal - majority die | pupal stage, with Scer\GAL4pnr-MD237 UbcD10GD11768 UbcD10GD16723 viable UbcD10EY08843 Sterility Allele fertile UbcD10EY08843 Other Phenotypes Allele body color defective, with Scer\GAL4pnr-MD237 UbcD10GD16723 neuroanatomy defective | larval stage UbcD10GD11768 UbcD10GD16723 neuroanatomy defective | somatic clone UbcD10BG00902 visible, with Scer\GAL4pnr-MD237 UbcD10GD16723 Phenotype manifest in Allele embryonic/larval neuroblast | larval stage UbcD10GD16723 ganglion mother cell | larval stage UbcD10GD11768 UbcD10GD16723 mesothoracic tergum, with Scer\GAL4pnr-MD237 UbcD10GD16723 neuroblast | somatic clone UbcD10BG00902 trichogen cell, with Scer\GAL4pnr-MD237 UbcD10GD16723
Classical Alleles ( 5 )
For All Classical Alleles Show
Allele of UbcD10 Class Mutagen Stocks Known lesion UbcD10BG00902 P-element activity 3 -- UbcD10d00775 P-element activity 1 -- UbcD10EY08843 P-element activity 1 -- UbcD10NP2336 1 -- UbcD1022 P-element activity 0 Yes
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of UbcD10 Class Mutagen Stocks Known lesion UbcD10GD16723 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes UbcD10GD11768 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes UbcD10KK108273 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD11768} NA P{GD16723} NA P{KK108273} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{GT1}UbcD10BG00902 NA P{lab-lacZ.1:550.mHMG}UbcD1022 NA insertion of mobile activating element P{EPgy2}UbcD10EY08843 NA P{XP}UbcD10d00775 NA insertion of enhancer trap binary system P{GawB}UbcD10NP2336 No
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function
CV term Evidence References
protein binding inferred from physical interaction with egg (Stabell et al., 2006)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
ubiquitin-protein ligase activity inferred from sequence or structural similarity with NCBI_gi:4507787 (FlyBase, 1992-) non-traceable author statement (Aguilera, 1999.4.5)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions UbcD10 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 62720 DroID - A comprehensive database of gene and protein interactions. • FBgn0026316 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37035 SignaLink - A protein-protein and protein-miRNA interaction database with multi-layered structure and multiple confidence scores. • Q7K738
Orthologs
OrthoDB Orthologs (44) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6RNBVX Dipteran inclusive ortholog search EOG67SSQ2 Insect inclusive ortholog search EOG6HT7PQ Arthropod inclusive ortholog search EOG6MGQQS Metazoa inclusive ortholog search EOG6716CD
Orthologs in Drosophila Species (EOG6RNBVX)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\UbcD10     Drosophila simulans   Dsim\GD25436 Y   Drosophila sechellia   Dsec\GM19945 Y   Drosophila erecta   Dere\GG21014 Y   Drosophila yakuba   Dyak\UbcD10 Y   Drosophila ananassae   Dana\GF13219 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA19129 Y   Drosophila persimilis   Dper\GL17270 Y   Drosophila willistoni   Dwil\GK22072 Y   Drosophila virilis   Dvir\GJ20107 Y   Drosophila mojavensis   Dmoj\GI20435 Y   Drosophila grimshawi   Dgri\GH19845 Y
Orthologs in non-Drosophila Dipterans (EOG67SSQ2)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL000179   Anopheles gambiae Malaria mosquito  Agam\AGAP001056   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ000735
Orthologs in non-Dipteran Insects (EOG6HT7PQ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC413822   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG005147   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH13342   Atta cephalotes Leafcutter ant  Acep\ACEP26495   Camponotus floridanus Florida carpenter ant  Cflo\CFLO12637   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14558   Linepithema humile Argentine ant  Lhum\LH19867   Pogonomyrmex barbatus Red harvester ant  Pbar\PB19858   Solenopsis invicta Red fire ant  Sinv\SINV14251   Acyrthosiphon pisum Pea aphid  Apim\ACYPI005089   Bombyx mori Silkmoth  Bmor\BGIBMGA012852   Pediculus humanus Human body louse  Phum\PHUM240810   Pediculus humanus Human body louse  Phum\PHUM240820   Tribolium castaneum Red flour beetle  Tcas\GLEAN_15328
Orthologs in non-Insect Arthropods (EOG6MGQQS)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\PRKAG3   Ixodes scapularis Deer tick  Isca\ISCW005644   Ixodes scapularis Deer tick  Isca\ISCW012606
Orthologs in non-Arthropod Metazoa (EOG6716CD)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\ubc-18 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_012828gn Y Danio rerio Zebrafish  Drer\ube2l3l Y Danio rerio Zebrafish  Drer\ube2l3a Y Xenopus tropicalis Western clawed frog  Xtro\ube2l3 Y Gallus gallus Domestic chicken  Ggal\UBE2L3 Y Mus musculus House mouse  Mmus\Ube2l6 Y Mus musculus House mouse  Mmus\Ube2l3 Y Rattus norvegicus Norway rat  Rnor\Ube2l3 Y Rattus norvegicus Norway rat  Rnor\Ube2l6 Y Homo sapiens Human  Hsap\ENSG00000156587 Y Homo sapiens Human  Hsap\UBE2L3 Y
Human Orthologs (2)
Gene OMIM HGNC Hsap\ENSG00000156587     Hsap\UBE2L3
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD25436 Drosophila sechellia Dsec\GM19945 Drosophila erecta Dere\GG21014 Drosophila yakuba Dyak\UbcD10 Drosophila ananassae Dana\GF13219 Drosophila pseudoobscura pseudoobscura Dpse\GA19129 Drosophila persimilis Dper\GL17270 Drosophila willistoni Dwil\GK22072 Drosophila virilis Dvir\GJ20107 Drosophila mojavensis Dmoj\GI20435 Drosophila grimshawi Dgri\GH19845
Stocks & Reagents
Stocks Listed in FlyBase ( 10 )
Bloomington	12444 w1118; P{GT1}UbcD10BG00902/CyO 19938 y1 w67c23; P{EPgy2}UbcD10EY08843
Harvard	- P{XP}UbcD10d00775
Kyoto	104160 w*; P{GawB}UbcD10NP2336 / CyO 108883 w1118; P{GT1}UbcD10BG00902/CyO 111482 yd2 w1118 P{ey-FLP.N}2 P{GMR-lacZ.C(38.1)}TPN1; P{neoFRT}42D P{GT1}UbcD10BG00902 /CyO y+
VDRC	v100570 P{KK108273}VIE-260B v27515 w1118; P{GD11768}v27515 v48145 w1118; P{GD16723}v48145 v48146 w1118; P{GD16723}v48146/CyO
Genomic Clones ( 1 )
	BACR20E20 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 114 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE47264
Other clones	yak-ad_UbcD10 yak-em_UbcD10
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH02225 GM05732 GM09227 LD10212 LD29789 LP01740 LP01810 LP04510 LP11665 RE18311 RE29126 RE41675 RE45885 RE62307 RE62907 RH12729 RH13324 SD16488 SD17549 SD21729
Other clones	9974 10342 18720 20870 28862 33474 56725 59553 61546 73900 153073 522822 CK01.92A.E11 EK072018 EK109018 EK109949 EK130652 EK134332 EK136815 EK186462 EK187214 EK256423 EN02849 FGC031C10 FGM104E03 FGM235D05 FGM310F08 LD30207 RP003026070 RP003026508 RP003027931 RP003051117 RP003051967 RP003068605 RP003129007 RP003133079 RP003138675 RP003174470 RP003174816 RP003177821 RP003178585 RP003185861 RP003189861 RP003200053 RP003217508 RP003217917 RP003220915 RP003230894 RP003233398 RP003233505 RP003236391 RP003240940 RP003247542 RP003258067 RP003259027 RP003269831 RP003276227 RP003276922 RP003278346 RP003284607 RP003285316 RP003285632 RP003293228 RP003293975 RP003294387 RP003310740 RP003319598 RP003323767 RP003336311 RP003337495 RP003344440 RP003344724 RP003359512 RP003418075 RP003421219 RP003441059 RP003441084 RP003443400 RP003446539 RP003447173 RP003467304 RP003497981 RP003512766 RP003513949 RP003514806 RP003530342 RP003560807 RP003599936 RP003601585 RP003620501 RP003631325
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0026316 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37035
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: UbcD10 EG:52C10.4 (FlyBase, 1996-)
Additional comments	Source for merge of UbcD10 EG:52C10.4 was sequence comparison (date:000129). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_058066 RefSeq (Proteins) • NP_477414 DDBJ / EMBL / GenBank • AA391349 AA950429 AAF57787 AC091500 AJ238007 AL035311 AZ877665 BG638584 BI362648 CAA22948 CAB40790 CL632172 CZ471799 Entrez Gene - A searchable database of RefSeq genes. • 37035 UniProtKB/TrEMBL • Q7K738
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ubiquitin-conjugating enzyme, E2 (IPR000608) Ubiquitin-conjugating enzyme/RWD-like (IPR016135) Ubiquitin-conjugating enzyme, active site (IPR023313)
Linkouts
	BioGRID - A database of protein and genetic interactions • 62720 DroID - A comprehensive database of gene and protein interactions. • FBgn0026316 DRSC - Results from RNAi screens. • FBgn0026316 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0026316 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5788-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0026316 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37035 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37035 modMine - Data generated by the modENCODE project. • FBgn0026316 SignaLink - A protein-protein and protein-miRNA interaction database with multi-layered structure and multiple confidence scores. • Q7K738
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	CG5788 (Keleman et al., 2009.8.5, Ying et al., 2011) EG:52C10.4   ubc (Englund et al., 1999) ubcD10 (Ebner et al., 2002, Aguilera et al., 2000, Kuo et al., 2006) UbcD10 (Stabell et al., 2006, Gradilla et al., 2011, Choksi et al., 2006, Carbone et al., 2009, Kuo et al., 2006, Neumüller et al., 2011, Ying et al., 2011)
Name Synonym	Ubiquitin conjugating enzyme 10
Secondary FlyBase IDs
	FBgn0028742
References ( 31 )
Generate a list of	All references relating to this gene ( 31 )
List References by type	Research paper  ( 14 ) Supplementary material  ( 5 ) Personal communication to FlyBase  ( 6 ) FlyBase analysis  ( 3 ) DNA/RNA sequence record  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 3 )
	Gradilla et al., 2011, Genetics 189(3): 871--883 Isoform-Specific Regulation of a Steroid Hormone Nuclear Receptor by an E3 Ubiquitin Ligase in Drosophila melanogaster. [FBrf0216551] Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593 Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi. [FBrf0213621] Ying et al., 2011, PLoS ONE 6(9): e23863 Comprehensively Surveying Structure and Function of RING Domains from Drosophila melanogaster. [FBrf0215242] Show all research papers ...