barbu
Please see the JBrowse view of Dmel\Tom for information on other features
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AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Gene model reviewed during 5.46
1.3 (northern blot)
There is only one protein coding transcript and one polypeptide associated with this gene
158 (aa)
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Tom using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: NOT mesoderm
Tom is strongly expressed in neuroepithelial cells in the optic lobe and downregulated in neuroblasts.
Tom transcripts appear in 2-4hr embryos, peak in 4-8 and 8-12hr embryos and then decline. They are barely detectable after the first instar larval stage. Tom transcripts are detected in the anteriormost and central regions of early blastoderm embryos. In late blastoderm embryos, Tom is uniformly expressed except in the ventralmost regions where its expression is repressed by sna. From gastrulation until the end of germ band elongation, Tom is expressed throughout the mesoderm though by stage 11, expression occurs in a segmental pattern and is observed in tracheal pit precursors. Tom is also expressed in the ectoderm. During germband elongation and neuroblast segregation, Tom transcripts are excluded from one or two rows of ectodermal and mesectodermal cells in each segment. Later, Tom transcripts are transiently absent from segmental, bilaterally symmetric patches of cells. At the beginning of germ band retraction, Tom is more weakly expressed in the ventral region than in the dorsal region of the ectoderm. Expression rapidly decays during germ band retraction. After dorsal closure, Tom expression is observed only in lymph glands. In eye discs, Tom is expressed anterior and posterior to the morphogenetic furrow.
The pattern of Tom protein distribution is the same as that observed for the mRNA.
JBrowse - Visual display of RNA-Seq signals
View Dmel\Tom in JBrowse3-42
3-36.5
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
polyclonal
ChEST reveals this is a target of Mef2.
Identification: as a protein that interacts with tin in a yeast two-hybrid screen.
Overexpression of Tom results in both bristle tufting and balding phenotypes.
Identification: Defined in yeast two hybrid system using tin as a bait.
Source for merge of: Tom anon- EST:fe1F6
Source for identity of: Tom anon- EST:fe1F6
Source for identity of: Tom Bbu