l(2)04154, l(2)k09907, dDEK, lincRNA.S2954
Please see the JBrowse view of Dmel\Dek for information on other features
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AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.
Low-frequency RNA-Seq exon junction(s) not annotated.
Gene model reviewed during 5.46
Gene model reviewed during 5.48
Tissue-specific extension of 3' UTRs observed during later stages (FBrf0218523, FBrf0219848); all variants may not be annotated
Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Dek using the Feature Mapper tool.
The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).
Comment: maternally deposited
Comment: expression assayed in cultured cells
Dek transcripts are expressed in S2 cells.
Comment: expression assayed in cultured cells
Dek protein is detected in S2 cells.
Comment: strong expression in the adult brain cortex nuclei
JBrowse - Visual display of RNA-Seq signals
View Dmel\Dek in JBrowse2-80
2-84.5
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.
For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.
polyclonal
Identification: Screen for proteins that bind the bcd mRNA 3' localization signal.
Source for merge of: l(2)04154 EG:EG0003.6
Source for merge of: Dek anon-WO0172774.191 anon-WO0172774.192 anon-WO0172774.194
l(2)k09318 may correspond to Dek: the P{lacW}l(2)k09318k09318 insertion maps within the transcription unit.
l(2)k11009 may correspond to Dek: the P{lacW}l(2)k11009k11009 insertion maps within the transcription unit.
snoRNA:Dek-a is encoded in an intron of Dek.
"Dek" is likely to be the same gene as "E(var)53E".
Source for merge of Dek anon-WO0172774.191 anon-WO0172774.192 anon-WO0172774.194 was sequence comparison ( date:051113 ).
