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Gene Dmel\CG9418

General Information
Symbol	Dmel\CG9418	Species	D. melanogaster
Name		Annotation symbol	CG9418
Feature type	protein_coding_gene	FlyBase ID	FBgn0026582
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	57C4-57C4	Sequence location	2R:17,033,713..17,035,113 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG9418 (FBgn0026582). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: DNA binding. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: High mobility group, HMG1/HMG2; High mobility group, superfamily. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 and 18-24 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult central nervous system, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1638938_at partially aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG9418: 13 out of 14 probes fall into this exonic region. Gene sequence location is 2R:17033713..17035113.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN26960 HFA04554
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 57C4-57C4   Limits computationally determined from genome sequence between P{PZ}king-tubby02821&P{lacW}Xbp1k13803 and P{EP}CG4266EP2258
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG9418 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.42
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG9418-RA FBtr0071573  NM_137709   1342   376
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG9418-PA   FBpp0071501   41.7   376   10.04     NP_611553   AAF46682
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • High mobility group, HMG1/HMG2 (IPR000910) High mobility group, superfamily (IPR009071)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA246791   AA263935   AA735192   AE013599 AAF46682   AI514794   AW943847   AY058722 AAL13951   BF498063   BG637716   BG640080   BH759582   CO186339   CO196090   CO196501   CO262324   CO287633   CO288275   CO291291   EC068193   EC081907   EC194636   EC196203   EC218912   EC219367   EC228699   EC240229   GH941224   GH941674   GH941794   GH942667   GH943421   GH943601   GH944770   GH946117   GH946638   GH946710   GH947260   GH947338   GH948014   GH948688   GH948926   GH949877   GH949901   GH950481   GH950665   GH951253   GH951399   GH952982   GH953044   GH953777   GH954004   GH955268   GH955690   GH955742   GH955848   GH956236   GH956903   GH956981   GH957451   GH957600   GH957615   GH957634   GH960106   GH960363   GH960619   GH960715   GH960814   GH960960   GH961306   GH961406   GH961504   GH962248   GH962675   GH962785   GH962799   GH962839   GH963296   GH963306   GH964490   GH965529   GH965662   GH965991   GH966488   GH966842   GH966864   GH968014   GH968381   GH968513   GH968522   GH968832   GH968849   GH969908   GH970246   GH970340   GH970679   GH972598   GH974236   GH975652   GH975865   GH976173   GH976368   GH976945   GH977087   GH977546   GH978131   GH978256   GH978578   GH978887   GH979153   GH979173   GH979650   GH980549   GH980582   GH981334   GH981730   GH981832   GH983049   GH984219   GH984288   GH984528   GH984629   GH984735
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9W2K8
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0026582    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0026582 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 and 18-24 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0026582 expression level Developmental Stage   Expression Level embryo 00-02hr    3200 embryo 02-04hr    3084 embryo 04-06hr    1153 embryo 06-08hr    1182 embryo 08-10hr    1444 embryo 10-12hr    1423 embryo 12-14hr    865 embryo 14-16hr    1045 embryo 16-18hr    851 embryo 18-20hr    630 embryo 20-22hr    1510 embryo 22-24hr    1160 larva L1    361 larva L2    338 larva L3 12hr old    354 larva L3 puffstage 1-2    396 larva L3 puffstage 3-6    541 larva L3 puffstage 7-9    623 white prepupae new    632 white prepupae 12hr    675 white prepupae 24hr    865 pupae 2d postWPP    611 pupae 3d postWPP    342 pupae 4d postWPP    292 adult male 01day    423 adult male 05day    542 adult male 30day    549 adult female 01day    652 adult female 05day    1187 adult female 30day    1328 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3200) embryo 02-04hr  (3084) embryo 04-06hr  (1153) embryo 06-08hr  (1182) embryo 08-10hr  (1444) embryo 10-12hr  (1423) embryo 12-14hr  (865) embryo 14-16hr  (1045) embryo 16-18hr  (851) embryo 18-20hr  (630) embryo 20-22hr  (1510) embryo 22-24hr  (1160) larva L1  (361) larva L2  (338) larva L3 12hr old  (354) larva L3 puffstage 1-2  (396) larva L3 puffstage 3-6  (541) larva L3 puffstage 7-9  (623) white prepupae new  (632) white prepupae 12hr  (675) white prepupae 24hr  (865) pupae 2d postWPP  (611) pupae 3d postWPP  (342) pupae 4d postWPP  (292) adult male 01day  (423) adult male 05day  (542) adult male 30day  (549) adult female 01day  (652) adult female 05day  (1187) adult female 30day  (1328) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3200) embryo 02-04hr  (3084) embryo 04-06hr    1153 embryo 06-08hr    1182 embryo 08-10hr  1444 embryo 10-12hr  1423 embryo 12-14hr    865 embryo 14-16hr    1045 embryo 16-18hr    851 embryo 18-20hr    630 embryo 20-22hr  (1510) embryo 22-24hr    1160 larva L1    361 larva L2    338 larva L3 12hr old    354 larva L3 puffstage 1-2    396 larva L3 puffstage 3-6    541 larva L3 puffstage 7-9    623 white prepupae new    632 white prepupae 12hr    675 white prepupae 24hr    865 pupae 2d postWPP    611 pupae 3d postWPP    342 pupae 4d postWPP    292 adult male 01day    423 adult male 05day    542 adult male 30day    549 adult female 01day    652 adult female 05day    1187 adult female 30day    1328 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3200 embryo 02-04hr    3084 embryo 04-06hr    1153 embryo 06-08hr    1182 embryo 08-10hr    1444 embryo 10-12hr    1423 embryo 12-14hr    865 embryo 14-16hr    1045 embryo 16-18hr    851 embryo 18-20hr    630 embryo 20-22hr    1510 embryo 22-24hr    1160 larva L1    361 larva L2    338 larva L3 12hr old    354 larva L3 puffstage 1-2    396 larva L3 puffstage 3-6    541 larva L3 puffstage 7-9    623 white prepupae new    632 white prepupae 12hr    675 white prepupae 24hr    865 pupae 2d postWPP    611 pupae 3d postWPP    342 pupae 4d postWPP    292 adult male 01day    423 adult male 05day    542 adult male 30day    549 adult female 01day    652 adult female 05day    1187 adult female 30day    1328 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3200 embryo 02-04hr    3084 embryo 04-06hr    1153 embryo 06-08hr    1182 embryo 08-10hr    1444 embryo 10-12hr    1423 embryo 12-14hr    865 embryo 14-16hr    1045 embryo 16-18hr    851 embryo 18-20hr    630 embryo 20-22hr    1510 embryo 22-24hr    1160 larva L1    361 larva L2    338 larva L3 12hr old    354 larva L3 puffstage 1-2    396 larva L3 puffstage 3-6    541 larva L3 puffstage 7-9    623 white prepupae new    632 white prepupae 12hr    675 white prepupae 24hr    865 pupae 2d postWPP    611 pupae 3d postWPP    342 pupae 4d postWPP    292 adult male 01day    423 adult male 05day    542 adult male 30day    549 adult female 01day    652 adult female 05day    1187 adult female 30day    1328 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0026582 expression level Developmental Stage   Expression Level embryo 00-02hr    3200 embryo 02-04hr    3084 embryo 04-06hr    1153 embryo 06-08hr    1182 embryo 08-10hr    1444 embryo 10-12hr    1423 embryo 12-14hr    865 embryo 14-16hr    1045 embryo 16-18hr    851 embryo 18-20hr    630 embryo 20-22hr    1510 embryo 22-24hr    1160 larva L1    361 larva L2    338 larva L3 12hr old    354 larva L3 puffstage 1-2    396 larva L3 puffstage 3-6    541 larva L3 puffstage 7-9    623 white prepupae new    632 white prepupae 12hr    675 white prepupae 24hr    865 pupae 2d postWPP    611 pupae 3d postWPP    342 pupae 4d postWPP    292 adult male 01day    423 adult male 05day    542 adult male 30day    549 adult female 01day    652 adult female 05day    1187 adult female 30day    1328 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3200) embryo 02-04hr  (3084) embryo 04-06hr  (1153) embryo 06-08hr  (1182) embryo 08-10hr  (1444) embryo 10-12hr  (1423) embryo 12-14hr  (865) embryo 14-16hr  (1045) embryo 16-18hr  (851) embryo 18-20hr  (630) embryo 20-22hr  (1510) embryo 22-24hr  (1160) larva L1  (361) larva L2  (338) larva L3 12hr old  (354) larva L3 puffstage 1-2  (396) larva L3 puffstage 3-6  (541) larva L3 puffstage 7-9  (623) white prepupae new  (632) white prepupae 12hr  (675) white prepupae 24hr  (865) pupae 2d postWPP  (611) pupae 3d postWPP  (342) pupae 4d postWPP  (292) adult male 01day  (423) adult male 05day  (542) adult male 30day  (549) adult female 01day  (652) adult female 05day  (1187) adult female 30day  (1328) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3200) embryo 02-04hr  (3084) embryo 04-06hr    1153 embryo 06-08hr    1182 embryo 08-10hr  1444 embryo 10-12hr  1423 embryo 12-14hr    865 embryo 14-16hr    1045 embryo 16-18hr    851 embryo 18-20hr    630 embryo 20-22hr  1510 embryo 22-24hr    1160 larva L1    361 larva L2    338 larva L3 12hr old    354 larva L3 puffstage 1-2    396 larva L3 puffstage 3-6    541 larva L3 puffstage 7-9    623 white prepupae new    632 white prepupae 12hr    675 white prepupae 24hr    865 pupae 2d postWPP    611 pupae 3d postWPP    342 pupae 4d postWPP    292 adult male 01day    423 adult male 05day    542 adult male 30day    549 adult female 01day    652 adult female 05day    1187 adult female 30day    1328 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3200 embryo 02-04hr    3084 embryo 04-06hr    1153 embryo 06-08hr    1182 embryo 08-10hr    1444 embryo 10-12hr    1423 embryo 12-14hr    865 embryo 14-16hr    1045 embryo 16-18hr    851 embryo 18-20hr    630 embryo 20-22hr    1510 embryo 22-24hr    1160 larva L1    361 larva L2    338 larva L3 12hr old    354 larva L3 puffstage 1-2    396 larva L3 puffstage 3-6    541 larva L3 puffstage 7-9    623 white prepupae new    632 white prepupae 12hr    675 white prepupae 24hr    865 pupae 2d postWPP    611 pupae 3d postWPP    342 pupae 4d postWPP    292 adult male 01day    423 adult male 05day    542 adult male 30day    549 adult female 01day    652 adult female 05day    1187 adult female 30day    1328 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3200 embryo 02-04hr    3084 embryo 04-06hr    1153 embryo 06-08hr    1182 embryo 08-10hr    1444 embryo 10-12hr    1423 embryo 12-14hr    865 embryo 14-16hr    1045 embryo 16-18hr    851 embryo 18-20hr    630 embryo 20-22hr    1510 embryo 22-24hr    1160 larva L1    361 larva L2    338 larva L3 12hr old    354 larva L3 puffstage 1-2    396 larva L3 puffstage 3-6    541 larva L3 puffstage 7-9    623 white prepupae new    632 white prepupae 12hr    675 white prepupae 24hr    865 pupae 2d postWPP    611 pupae 3d postWPP    342 pupae 4d postWPP    292 adult male 01day    423 adult male 05day    542 adult male 30day    549 adult female 01day    652 adult female 05day    1187 adult female 30day    1328 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0026582    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0026582 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult central nervous system, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0026582 expression level Tissue   Expression Level Larval Central Nervous System    91.825 Larval Midgut    28.2 Larval Hindgut    65.5 Larval Malpighian Tubules    70.8 Larval Fat Body    35 Larval Salivary Gland    46.2 Larval Trachea    65.825 Larval Carcass    45.4 Adult Head    45.8 Adult Eye    64.375 Adult Brain    102.4 Adult Thoracic-Abdominal Ganglion    106.9 Adult Crop    97.4 Adult Midgut    34.5 Adult Hindgut    66.1 Adult Malpighian Tubules    50.7 Adult Fat Body    30.8 Adult Salivary Gland no informative data Adult Heart    46.25 Adult VirginFemale Spermatheca    38.4 Adult InseminatedFemale Spermatheca    41.6 Adult Ovary    148.5 Adult Testis    29.3 Adult Male Accessory Gland    52.7 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    91.825 Larval Midgut    28.2 Larval Hindgut    65.5 Larval Malpighian Tubules    70.8 Larval Fat Body    35 Larval Salivary Gland    46.2 Larval Trachea    65.825 Larval Carcass    45.4 Adult Head    45.8 Adult Eye    64.375 Adult Brain    102.4 Adult Thoracic-Abdominal Ganglion    106.9 Adult Crop    97.4 Adult Midgut    34.5 Adult Hindgut    66.1 Adult Malpighian Tubules    50.7 Adult Fat Body    30.8 Adult Salivary Gland no informative data Adult Heart    46.25 Adult VirginFemale Spermatheca    38.4 Adult InseminatedFemale Spermatheca    41.6 Adult Ovary    148.5 Adult Testis    29.3 Adult Male Accessory Gland    52.7 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    91.825 Larval Midgut    28.2 Larval Hindgut    65.5 Larval Malpighian Tubules    70.8 Larval Fat Body    35 Larval Salivary Gland    46.2 Larval Trachea    65.825 Larval Carcass    45.4 Adult Head    45.8 Adult Eye    64.375 Adult Brain    102.4 Adult Thoracic-Abdominal Ganglion    106.9 Adult Crop    97.4 Adult Midgut    34.5 Adult Hindgut    66.1 Adult Malpighian Tubules    50.7 Adult Fat Body    30.8 Adult Salivary Gland no informative data Adult Heart    46.25 Adult VirginFemale Spermatheca    38.4 Adult InseminatedFemale Spermatheca    41.6 Adult Ovary    148.5 Adult Testis    29.3 Adult Male Accessory Gland    52.7 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    91.825 Larval Midgut    28.2 Larval Hindgut    65.5 Larval Malpighian Tubules    70.8 Larval Fat Body    35 Larval Salivary Gland    46.2 Larval Trachea    65.825 Larval Carcass    45.4 Adult Head    45.8 Adult Eye    64.375 Adult Brain    102.4 Adult Thoracic-Abdominal Ganglion    106.9 Adult Crop    97.4 Adult Midgut    34.5 Adult Hindgut    66.1 Adult Malpighian Tubules    50.7 Adult Fat Body    30.8 Adult Salivary Gland no informative data Adult Heart    46.25 Adult VirginFemale Spermatheca    38.4 Adult InseminatedFemale Spermatheca    41.6 Adult Ovary    148.5 Adult Testis    29.3 Adult Male Accessory Gland    52.7 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0026582 expression level Tissue   Expression Level Larval Central Nervous System    91.825 Larval Midgut    28.2 Larval Hindgut    65.5 Larval Malpighian Tubules    70.8 Larval Fat Body    35 Larval Salivary Gland    46.2 Larval Trachea    65.825 Larval Carcass    45.4 Adult Head    45.8 Adult Eye    64.375 Adult Brain    102.4 Adult Thoracic-Abdominal Ganglion    106.9 Adult Crop    97.4 Adult Midgut    34.5 Adult Hindgut    66.1 Adult Malpighian Tubules    50.7 Adult Fat Body    30.8 Adult Salivary Gland no informative data Adult Heart    46.25 Adult VirginFemale Spermatheca    38.4 Adult InseminatedFemale Spermatheca    41.6 Adult Ovary    148.5 Adult Testis    29.3 Adult Male Accessory Gland    52.7 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    91.825 Larval Midgut    28.2 Larval Hindgut    65.5 Larval Malpighian Tubules    70.8 Larval Fat Body    35 Larval Salivary Gland    46.2 Larval Trachea    65.825 Larval Carcass    45.4 Adult Head    45.8 Adult Eye    64.375 Adult Brain    102.4 Adult Thoracic-Abdominal Ganglion    106.9 Adult Crop    97.4 Adult Midgut    34.5 Adult Hindgut    66.1 Adult Malpighian Tubules    50.7 Adult Fat Body    30.8 Adult Salivary Gland no informative data Adult Heart    46.25 Adult VirginFemale Spermatheca    38.4 Adult InseminatedFemale Spermatheca    41.6 Adult Ovary    148.5 Adult Testis    29.3 Adult Male Accessory Gland    52.7 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    91.825 Larval Midgut    28.2 Larval Hindgut    65.5 Larval Malpighian Tubules    70.8 Larval Fat Body    35 Larval Salivary Gland    46.2 Larval Trachea    65.825 Larval Carcass    45.4 Adult Head    45.8 Adult Eye    64.375 Adult Brain    102.4 Adult Thoracic-Abdominal Ganglion    106.9 Adult Crop    97.4 Adult Midgut    34.5 Adult Hindgut    66.1 Adult Malpighian Tubules    50.7 Adult Fat Body    30.8 Adult Salivary Gland no informative data Adult Heart    46.25 Adult VirginFemale Spermatheca    38.4 Adult InseminatedFemale Spermatheca    41.6 Adult Ovary    148.5 Adult Testis    29.3 Adult Male Accessory Gland    52.7 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    91.825 Larval Midgut    28.2 Larval Hindgut    65.5 Larval Malpighian Tubules    70.8 Larval Fat Body    35 Larval Salivary Gland    46.2 Larval Trachea    65.825 Larval Carcass    45.4 Adult Head    45.8 Adult Eye    64.375 Adult Brain    102.4 Adult Thoracic-Abdominal Ganglion    106.9 Adult Crop    97.4 Adult Midgut    34.5 Adult Hindgut    66.1 Adult Malpighian Tubules    50.7 Adult Fat Body    30.8 Adult Salivary Gland no informative data Adult Heart    46.25 Adult VirginFemale Spermatheca    38.4 Adult InseminatedFemale Spermatheca    41.6 Adult Ovary    148.5 Adult Testis    29.3 Adult Male Accessory Gland    52.7 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland no informative data Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass no informative data FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    45.8   NA  Eye    64.375   NA  Brain    102.4   91.825  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    106.9   NA  Crop    97.4   28.2  Midgut    34.5   65.5  Hindgut    66.1   70.8  Malpighian Tubules    50.7   35  Fat Body    30.8   46.2  Salivary Gland    no informative data   NA  Heart    46.25   65.825  Trachea    NA   NA  VirginFemale Spermatheca    38.4   NA  InseminatedFemale Spermatheca    41.6   NA  Ovary    148.5   NA  Testis    29.3   NA  Male Accessory Gland    52.7   45.4  Carcass    no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_17
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0026582 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9418-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | pupal stage, with Scer\GAL4pnr-MD237 CG9418GD4419 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG9418 Class Mutagen Stocks Known lesion CG9418KG05183 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG9418 Class Mutagen Stocks Known lesion CG9418GD4419 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG9418JF02114 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG9418KK106960 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel6072 (Ryder, 2004.4.26) Df(2R)Exel6073 (Ryder, 2004.4.26) Df(2R)Exel7167 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4419} NA P{KK106960} NA P{TRiP.JF02114} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{SUPor-P}CG9418KG05183 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
DNA binding inferred from sequence or structural similarity with mouse Hmg20a AND inferred from sequence or structural similarity with mouse Hmg20b (FlyBase, 1992-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG9418 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 63042 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0026582 DroID - A comprehensive database of gene and protein interactions. • FBgn0026582 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37407
Orthologs
Genome-wide drosophilid orthologs	Dana\GF11938 Dere\GG22094 Dgri\GH20725 Dmoj\GI20809 Dper\GL10158 Dpse\GA21773 Dsec\GM15811 Dsim\GD11569 Dvir\GJ20542 Dwil\GK19656 Dyak\GE12173
Curated drosophilid orthologs	Dpse\GA21773
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL005309-PA Aedes aegypti (mosquito) AAEL013914-PA Aedes aegypti (mosquito) AGAP004789-PA Anopheles gambiae (mosquito) AGAP004791-PA Anopheles gambiae (mosquito) XP_625193.1 Apis mellifera (honey bee) 126796 Branchiostoma floridae (lancelet) 126798 Branchiostoma floridae (lancelet) XP_001893364.1 Brugia malayi (roundworm nematode) BGIBMGA005325-PA Bombyx mori (silk worm) ENSBTAP00000011581 Bos taurus (bovine) ENSCAFP00000026696 Canis familiaris (dog) CPIJ004396 Culex pipens (mosquito) ENSCPOP00000009676 Cavia porcellus (guinea pig) ENSCSAVP00000001855 Ciona savignyi (sedentary tunicate) 155070 Capitella spl (polychaete worm) 189566 Daphnia pulex (daphnia) ENSDARP00000095483 Danio rerio (zebra fish) ENSGACP00000004550 Gymnopilus aculeatus (mushroom) ENSGALP00000004319 Gallus gallus (chicken) 189739 Hypsipyla robusta (cedar shoot borer) ENSP00000328269 Homo sapiens (human) 196090 Lottia gigantea (owl limpet) ENSMODP00000015169 Monodelphis domestica (gray opossum) ENSMMUP00000009749 Macaca mulatta (rhesus monkey) ENSMUSP00000034879 Mus musculus (house mouse) 105457 Nematostella vectensis (starlet anemone) XP_001601977.1 Nasonia vitripennis (wasp) ENSOANP00000015843 Ornithorynchus anatinus (platypus) ENSORLP00000002234 Oryzias latipes (japanese killifish) PHUM010537-PA Pediculus humanus (human body louse) ENSPPYP00000007582 Pongo pygmaeus (orangutan) ENSPTRP00000012525 Pan troglodytes (chimpanzee) ENSRNOP00000028002 Rattus norvegicus (norway rat) Smp_173650 Schistosoma mansoni (trematode parasite) XP_790476.1 Strongylocentrotus purpuratus (purple sea urchin) 23407 Trichoplax adhaerens (metazoa) XP_974205.1 Tribolium castaneum (red flour beetle) ENSTNIP00000011296 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000041221 Takifugu rubripes (pufferfish Takifugu) 3701.m00017 Tetrahymena thermophila (ciliate protozoa) ENSXETP00000033399 Xenopus tropicalis (frog) YALI0D17996g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB19106 NV11068 LH16902 FBgn0229938 FBgn0221654 FBgn0207682 FBgn0183310 FBgn0170727 JGI_V11_189566 FBgn0081758 FBgn0147768 FBgn0143544 FBgn0128188 FBgn0114269 FBgn0088977 CPIJ004396 BGIBMGA005325 ACYPI34316 ACYPI25195 ACYPI002322 ACYPI001201 GB17470 AGAP004791 AGAP004789 AAEL013914 AAEL005309 PHUM514030 GLEAN_09230
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	26216 y1 v1; P{TRiP.JF02114}attP2 13878 y1 w67c23; P{SUPor-P}CG9418KG05183
VDRC	v37665 w1118; P{GD4419}v37665
Genomic Clones ( 2 )
	BACR12O13 BACR16B07 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 117 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD46483
Other clones	DPiM_LD46483
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT12422 LD05765 LD07122 SD11023
Other clones	CK01.20B.A6 CK01.83A.C4 CK01.86B.H5 CK01.100C.C10 CK01.111C.E12 CK01.116D.C9 CK01.116D.E9 EK000739 EK005008 EK018827 EK066342 EK068131 EK077343 EK085041 LD01564 RP004054245 RP004054536 RP004054834 RP004059290 RP004068169 RP004069718 RP004082949 RP004089861 RP004092041 RP004092476 RP004100821 RP004121111 RP004124211 RP004135329 RP004136936 RP004158588 RP004165819 RP004170308 RP004170831 RP004178419 RP004178724 RP004190633 RP004195089 RP004196276 RP004198558 RP004199211 RP004200552 RP004203007 RP004210272 RP004210883 RP004211357 RP004215006 RP004217200 RP004218394 RP004224283 RP004227981 RP004229179 RP004232447 RP004237374 RP004239446 RP004239740 RP004248601 RP004248985 RP004252856 RP004253217 RP004253288 RP004255470 RP004258909 RP004258944 RP004261859 RP004262781 RP004263317 RP004264981 RP004269906 RP004287454 RP004302307 RP004306269 RP004321186 RP004327140 RP004333145 RP004338130 RP004368017 RP004396030 RP004423970 RP004428957 RP004430114 RP004435723 RP004449186 RP004449268 RP004452925 RP004453347 RP004455560 RP004460217 RP004474905 RP004475108 RP004479595 RP004484373 RP004488801 RP004491544 RP004503028 RP004515788 RP004516008 RP004520639 RP004521541 RP004521632 RP004523834 RP004526851 RP004534729 RP004534843 RP004537559 RP004538599 RP004542782 RP004543800 RP004544350 RP004546232 RP004548870
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0026582 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37407
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: BEST:LD07122 CG9418 (Bayraktaroglu, 2000.11.2)
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_137709 RefSeq (Proteins) • NP_611553 DDBJ / EMBL / GenBank • AA263935 AAF46682 AAL13951 AI514794 AW943847 AY058722 BH759582 Entrez Gene - A searchable database of RefSeq genes. • 37407 UniProtKB/TrEMBL • Q9W2K8
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • High mobility group, HMG1/HMG2 (IPR000910) High mobility group, superfamily (IPR009071)
Linkouts
	BioGRID - A database of protein and genetic interactions • 63042 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0026582 DroID - A comprehensive database of gene and protein interactions. • FBgn0026582 DRSC - Results from RNAi screens. • FBgn0026582 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0026582 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9418-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0026582 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37407 InParanoid A subset of ortholog calls from InParanoid. • AAEL005309-PA Aedes aegypti (mosquito) AAEL013914-PA Aedes aegypti (mosquito) AGAP004789-PA Anopheles gambiae (mosquito) AGAP004791-PA Anopheles gambiae (mosquito) XP_625193.1 Apis mellifera (honey bee) 126796 Branchiostoma floridae (lancelet) 126798 Branchiostoma floridae (lancelet) XP_001893364.1 Brugia malayi (roundworm nematode) BGIBMGA005325-PA Bombyx mori (silk worm) ENSBTAP00000011581 Bos taurus (bovine) ENSCAFP00000026696 Canis familiaris (dog) CPIJ004396 Culex pipens (mosquito) ENSCPOP00000009676 Cavia porcellus (guinea pig) ENSCSAVP00000001855 Ciona savignyi (sedentary tunicate) 155070 Capitella spl (polychaete worm) 189566 Daphnia pulex (daphnia) ENSDARP00000095483 Danio rerio (zebra fish) ENSGACP00000004550 Gymnopilus aculeatus (mushroom) ENSGALP00000004319 Gallus gallus (chicken) 189739 Hypsipyla robusta (cedar shoot borer) ENSP00000328269 Homo sapiens (human) 196090 Lottia gigantea (owl limpet) ENSMODP00000015169 Monodelphis domestica (gray opossum) ENSMMUP00000009749 Macaca mulatta (rhesus monkey) ENSMUSP00000034879 Mus musculus (house mouse) 105457 Nematostella vectensis (starlet anemone) XP_001601977.1 Nasonia vitripennis (wasp) ENSOANP00000015843 Ornithorynchus anatinus (platypus) ENSORLP00000002234 Oryzias latipes (japanese killifish) PHUM010537-PA Pediculus humanus (human body louse) ENSPPYP00000007582 Pongo pygmaeus (orangutan) ENSPTRP00000012525 Pan troglodytes (chimpanzee) ENSRNOP00000028002 Rattus norvegicus (norway rat) Smp_173650 Schistosoma mansoni (trematode parasite) XP_790476.1 Strongylocentrotus purpuratus (purple sea urchin) 23407 Trichoplax adhaerens (metazoa) XP_974205.1 Tribolium castaneum (red flour beetle) ENSTNIP00000011296 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000041221 Takifugu rubripes (pufferfish Takifugu) 3701.m00017 Tetrahymena thermophila (ciliate protozoa) ENSXETP00000033399 Xenopus tropicalis (frog) YALI0D17996g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37407 modMine - Data generated by the modENCODE project. • FBgn0026582 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB19106 NV11068 LH16902 FBgn0229938 FBgn0221654 FBgn0207682 FBgn0183310 FBgn0170727 JGI_V11_189566 FBgn0081758 FBgn0147768 FBgn0143544 FBgn0128188 FBgn0114269 FBgn0088977 CPIJ004396 BGIBMGA005325 ACYPI34316 ACYPI25195 ACYPI002322 ACYPI001201 GB17470 AGAP004791 AGAP004789 AAEL013914 AAEL005309 PHUM514030 GLEAN_09230
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	BEST:LD07122 (Giot et al., 2003, ) CG9418 (Aigaki, 2007.5.14, Perkins et al., 2009.3.31, Keleman et al., 2009.8.5) LD07122 (Toba et al., 1999)
Name Synonym
Secondary FlyBase IDs
	FBgn0034594
References ( 17 )
Research paper	Toba et al., 1999, Genetics 151(2): 725--737 The gene search system. A method for efficient detection and rapid molecular identification of genes in Drosophila melanogaster. [FBrf0107369]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Perkins et al., 2009.3.31, TRiP stock collection set 2. TRiP stock collection set 2. [FBrf0207631] Aigaki, 2007.5.14, Re: FlyBase query: GS2163A, GS2163B, GS2048A, GS2048B. Re: FlyBase query: GS2163A, GS2163B, GS2048A, GS2048B. [FBrf0198748] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Bayraktaroglu, 2000.11.2, Current list of possibly CG-able known genes. Current list of possibly CG-able known genes. [FBrf0131225]
FlyBase analysis	FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]
Curated genome annotation	Lei, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126680]