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Gene Dmel\Rad23

General Information
Symbol	Dmel\Rad23	Species	D. melanogaster
Name	Rad23	Annotation symbol	CG1836
Feature type	protein_coding_gene	FlyBase ID	FBgn0026777
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	4	Recombination map
Cytogenetic map	102B3-102B3	Sequence location	4:328,723..330,934 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Rad23 is referred to in FlyBase by the symbol Dmel\Rad23 (CG1836, FBgn0026777). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: damaged DNA binding. Based on sequence similarity, it is predicted to be involved in the biological process: nucleotide-excision repair. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Heat shock chaperonin-binding; UBA-like; UV excision repair protein Rad23; Ubiquitin; Ubiquitin supergroup; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote; XPC-binding domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-06 hour embryonic stages, during late larval stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, larval/adult midgut, larval hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult ovary, adult male accessory gland, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult hindgut, adult spermathecae, adult testis, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1625068_a_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of Rad23. Gene sequence location is 4:328723..330934.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01	Sequence features BKN27826 BKN46044 HFA17167
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 102B3-102B3   Limits computationally determined from genome sequence between P{SUPor-P}CrkKG00336&P{SUPor-P}KG00711 and P{SUPor-P}KG02769
Experimentally Determined Cytological Location
Cytogenetic map Notes References 102A-102A     (Soldatov, 1999.3.23) 102B1-102B2     (Brodsky, 1999.3.2)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Rad23 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Rad23-RA FBtr0089122  NM_143661   1477   414 Rad23-RB FBtr0089121  NM_166752   1509   343
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Rad23-PA   FBpp0088191   45.8   414   4.31     NP_651918   AAF59352 Rad23-PB   FBpp0088190   37.5   343   4.16     NP_726561   AAN06526
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (IPR015940) Ubiquitin-associated/translation elongation factor EF1B, N-terminal (IPR000449) Ubiquitin (IPR000626) UV excision repair protein Rad23 (IPR004806) Heat shock chaperonin-binding (IPR006636) UBA-like (IPR009060) XPC-binding domain (IPR015360) Ubiquitin supergroup (IPR019955)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201124   AA201441   AA202860   AA246210   AA391482   AA438285   AA439725   AA439807   AA540254   AA540262   AA541088   AA541179   AA697075   AA735132   AA802340   AA802566   AA942220   AA949192   AE014135 AAF59352   AE014135 AAN06526   AF132147 AAD33594   AF136606 AAD33695   AI063033   AI516230   AI518277   AI542707   AI543998   BG639142   BG639171   BI165928   BI167766   BI168913   BI172388   BI212624   BI213041   BI216091   BI227529   BI229448   BI238484   BI239018   BI240438   BI243681   BI367805   BI369633   BI370105   BI482618   BI486755   BP545941   BP546276   BP556765   BP556766   BP558814   BP558815   CO180825   CO181745   CO181747   CO183165   CO183959   CO189508   CO195948   CO278141   CO297340   CO318800   CO322356   CO338016   EC072380   EC075969   EC080709   EC089747   EC223373   EC244424   EC247788   EC266190
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8IMB7 Q9V3W9 Q9XZE0
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0026777    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0026777 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-06 hour embryonic stages, during late larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0026777 expression level Developmental Stage   Expression Level embryo 00-02hr    13194 embryo 02-04hr    14299 embryo 04-06hr    11880 embryo 06-08hr    7296 embryo 08-10hr    8298 embryo 10-12hr    6150 embryo 12-14hr    8207 embryo 14-16hr    3413 embryo 16-18hr    4486 embryo 18-20hr    2733 embryo 20-22hr    3276 embryo 22-24hr    5182 larva L1    2796 larva L2    4016 larva L3 12hr old    3127 larva L3 puffstage 1-2    4232 larva L3 puffstage 3-6    6184 larva L3 puffstage 7-9    10955 white prepupae new    9854 white prepupae 12hr    5548 white prepupae 24hr    5345 pupae 2d postWPP    5174 pupae 3d postWPP    3337 pupae 4d postWPP    2541 adult male 01day    3215 adult male 05day    3094 adult male 30day    2254 adult female 01day    3060 adult female 05day    9192 adult female 30day    7868 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (13194) embryo 02-04hr  (14299) embryo 04-06hr  (11880) embryo 06-08hr  (7296) embryo 08-10hr  (8298) embryo 10-12hr  (6150) embryo 12-14hr  (8207) embryo 14-16hr  (3413) embryo 16-18hr  (4486) embryo 18-20hr  (2733) embryo 20-22hr  (3276) embryo 22-24hr  (5182) larva L1  (2796) larva L2  (4016) larva L3 12hr old  (3127) larva L3 puffstage 1-2  (4232) larva L3 puffstage 3-6  (6184) larva L3 puffstage 7-9  (10955) white prepupae new  (9854) white prepupae 12hr  (5548) white prepupae 24hr  (5345) pupae 2d postWPP  (5174) pupae 3d postWPP  (3337) pupae 4d postWPP  (2541) adult male 01day  (3215) adult male 05day  (3094) adult male 30day  (2254) adult female 01day  (3060) adult female 05day  (9192) adult female 30day  (7868) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (13194) embryo 02-04hr  (14299) embryo 04-06hr  (11880) embryo 06-08hr  (7296) embryo 08-10hr  (8298) embryo 10-12hr  (6150) embryo 12-14hr  (8207) embryo 14-16hr  (3413) embryo 16-18hr  (4486) embryo 18-20hr  (2733) embryo 20-22hr  (3276) embryo 22-24hr  (5182) larva L1  (2796) larva L2  (4016) larva L3 12hr old  (3127) larva L3 puffstage 1-2  (4232) larva L3 puffstage 3-6  (6184) larva L3 puffstage 7-9  (10955) white prepupae new  (9854) white prepupae 12hr  (5548) white prepupae 24hr  (5345) pupae 2d postWPP  (5174) pupae 3d postWPP  (3337) pupae 4d postWPP  (2541) adult male 01day  (3215) adult male 05day  (3094) adult male 30day  (2254) adult female 01day  (3060) adult female 05day  (9192) adult female 30day  (7868) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (13194) embryo 02-04hr  (14299) embryo 04-06hr  (11880) embryo 06-08hr    7296 embryo 08-10hr    8298 embryo 10-12hr    6150 embryo 12-14hr    8207 embryo 14-16hr    3413 embryo 16-18hr    4486 embryo 18-20hr    2733 embryo 20-22hr    3276 embryo 22-24hr    5182 larva L1    2796 larva L2    4016 larva L3 12hr old    3127 larva L3 puffstage 1-2    4232 larva L3 puffstage 3-6    6184 larva L3 puffstage 7-9  (10955) white prepupae new    9854 white prepupae 12hr    5548 white prepupae 24hr    5345 pupae 2d postWPP    5174 pupae 3d postWPP    3337 pupae 4d postWPP    2541 adult male 01day    3215 adult male 05day    3094 adult male 30day    2254 adult female 01day    3060 adult female 05day    9192 adult female 30day    7868 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    13194 embryo 02-04hr    14299 embryo 04-06hr    11880 embryo 06-08hr    7296 embryo 08-10hr    8298 embryo 10-12hr    6150 embryo 12-14hr    8207 embryo 14-16hr    3413 embryo 16-18hr    4486 embryo 18-20hr    2733 embryo 20-22hr    3276 embryo 22-24hr    5182 larva L1    2796 larva L2    4016 larva L3 12hr old    3127 larva L3 puffstage 1-2    4232 larva L3 puffstage 3-6    6184 larva L3 puffstage 7-9    10955 white prepupae new    9854 white prepupae 12hr    5548 white prepupae 24hr    5345 pupae 2d postWPP    5174 pupae 3d postWPP    3337 pupae 4d postWPP    2541 adult male 01day    3215 adult male 05day    3094 adult male 30day    2254 adult female 01day    3060 adult female 05day    9192 adult female 30day    7868 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0026777 expression level Developmental Stage   Expression Level embryo 00-02hr    13194 embryo 02-04hr    14299 embryo 04-06hr    11880 embryo 06-08hr    7296 embryo 08-10hr    8298 embryo 10-12hr    6150 embryo 12-14hr    8207 embryo 14-16hr    3413 embryo 16-18hr    4486 embryo 18-20hr    2733 embryo 20-22hr    3276 embryo 22-24hr    5182 larva L1    2796 larva L2    4016 larva L3 12hr old    3127 larva L3 puffstage 1-2    4232 larva L3 puffstage 3-6    6184 larva L3 puffstage 7-9    10955 white prepupae new    9854 white prepupae 12hr    5548 white prepupae 24hr    5345 pupae 2d postWPP    5174 pupae 3d postWPP    3337 pupae 4d postWPP    2541 adult male 01day    3215 adult male 05day    3094 adult male 30day    2254 adult female 01day    3060 adult female 05day    9192 adult female 30day    7868 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (13194) embryo 02-04hr  (14299) embryo 04-06hr  (11880) embryo 06-08hr  (7296) embryo 08-10hr  (8298) embryo 10-12hr  (6150) embryo 12-14hr  (8207) embryo 14-16hr  (3413) embryo 16-18hr  (4486) embryo 18-20hr  (2733) embryo 20-22hr  (3276) embryo 22-24hr  (5182) larva L1  (2796) larva L2  (4016) larva L3 12hr old  (3127) larva L3 puffstage 1-2  (4232) larva L3 puffstage 3-6  (6184) larva L3 puffstage 7-9  (10955) white prepupae new  (9854) white prepupae 12hr  (5548) white prepupae 24hr  (5345) pupae 2d postWPP  (5174) pupae 3d postWPP  (3337) pupae 4d postWPP  (2541) adult male 01day  (3215) adult male 05day  (3094) adult male 30day  (2254) adult female 01day  (3060) adult female 05day  (9192) adult female 30day  (7868) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (13194) embryo 02-04hr  (14299) embryo 04-06hr  (11880) embryo 06-08hr  (7296) embryo 08-10hr  (8298) embryo 10-12hr  (6150) embryo 12-14hr  (8207) embryo 14-16hr  (3413) embryo 16-18hr  (4486) embryo 18-20hr  (2733) embryo 20-22hr  (3276) embryo 22-24hr  (5182) larva L1  (2796) larva L2  (4016) larva L3 12hr old  (3127) larva L3 puffstage 1-2  (4232) larva L3 puffstage 3-6  (6184) larva L3 puffstage 7-9  (10955) white prepupae new  (9854) white prepupae 12hr  (5548) white prepupae 24hr  (5345) pupae 2d postWPP  (5174) pupae 3d postWPP  (3337) pupae 4d postWPP  (2541) adult male 01day  (3215) adult male 05day  (3094) adult male 30day  2254 adult female 01day  (3060) adult female 05day  (9192) adult female 30day  (7868) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  13194 embryo 02-04hr  14299 embryo 04-06hr  11880 embryo 06-08hr    7296 embryo 08-10hr    8298 embryo 10-12hr    6150 embryo 12-14hr    8207 embryo 14-16hr    3413 embryo 16-18hr    4486 embryo 18-20hr    2733 embryo 20-22hr    3276 embryo 22-24hr    5182 larva L1    2796 larva L2    4016 larva L3 12hr old    3127 larva L3 puffstage 1-2    4232 larva L3 puffstage 3-6    6184 larva L3 puffstage 7-9  10955 white prepupae new    9854 white prepupae 12hr    5548 white prepupae 24hr    5345 pupae 2d postWPP    5174 pupae 3d postWPP    3337 pupae 4d postWPP    2541 adult male 01day    3215 adult male 05day    3094 adult male 30day    2254 adult female 01day    3060 adult female 05day    9192 adult female 30day    7868 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    13194 embryo 02-04hr    14299 embryo 04-06hr    11880 embryo 06-08hr    7296 embryo 08-10hr    8298 embryo 10-12hr    6150 embryo 12-14hr    8207 embryo 14-16hr    3413 embryo 16-18hr    4486 embryo 18-20hr    2733 embryo 20-22hr    3276 embryo 22-24hr    5182 larva L1    2796 larva L2    4016 larva L3 12hr old    3127 larva L3 puffstage 1-2    4232 larva L3 puffstage 3-6    6184 larva L3 puffstage 7-9    10955 white prepupae new    9854 white prepupae 12hr    5548 white prepupae 24hr    5345 pupae 2d postWPP    5174 pupae 3d postWPP    3337 pupae 4d postWPP    2541 adult male 01day    3215 adult male 05day    3094 adult male 30day    2254 adult female 01day    3060 adult female 05day    9192 adult female 30day    7868 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0026777    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0026777 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, larval/adult midgut, larval hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult ovary, adult male accessory gland, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult hindgut, adult spermathecae, adult testis, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0026777 expression level Tissue   Expression Level Larval Central Nervous System    574.4 Larval Midgut    628.1 Larval Hindgut    653.1 Larval Malpighian Tubules    1100.5 Larval Fat Body    702.4 Larval Salivary Gland    943.6 Larval Trachea    574.225 Larval Carcass    1035.95 Adult Head    387.4 Adult Eye    341.6 Adult Brain    482.6 Adult Thoracic-Abdominal Ganglion    455.9 Adult Crop    623.7 Adult Midgut    543.8 Adult Hindgut    441.4 Adult Malpighian Tubules    669.3 Adult Fat Body    520.8 Adult Salivary Gland    523.2 Adult Heart    556.45 Adult VirginFemale Spermatheca    329.8 Adult InseminatedFemale Spermatheca    389.1 Adult Ovary    1251.4 Adult Testis    377.3 Adult Male Accessory Gland    908.9 Adult Carcass    472.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (574.4) Larval Midgut  (628.1) Larval Hindgut  (653.1) Larval Malpighian Tubules  (1100.5) Larval Fat Body  (702.4) Larval Salivary Gland  (943.6) Larval Trachea  (574.225) Larval Carcass  (1035.95) Adult Head    387.4 Adult Eye    341.6 Adult Brain    482.6 Adult Thoracic-Abdominal Ganglion    455.9 Adult Crop  (623.7) Adult Midgut  (543.8) Adult Hindgut    441.4 Adult Malpighian Tubules  (669.3) Adult Fat Body  520.8 Adult Salivary Gland  523.2 Adult Heart  (556.45) Adult VirginFemale Spermatheca    329.8 Adult InseminatedFemale Spermatheca    389.1 Adult Ovary  (1251.4) Adult Testis    377.3 Adult Male Accessory Gland  (908.9) Adult Carcass    472.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    574.4 Larval Midgut    628.1 Larval Hindgut    653.1 Larval Malpighian Tubules  (1100.5) Larval Fat Body    702.4 Larval Salivary Gland    943.6 Larval Trachea    574.225 Larval Carcass  1035.95 Adult Head    387.4 Adult Eye    341.6 Adult Brain    482.6 Adult Thoracic-Abdominal Ganglion    455.9 Adult Crop    623.7 Adult Midgut    543.8 Adult Hindgut    441.4 Adult Malpighian Tubules    669.3 Adult Fat Body    520.8 Adult Salivary Gland    523.2 Adult Heart    556.45 Adult VirginFemale Spermatheca    329.8 Adult InseminatedFemale Spermatheca    389.1 Adult Ovary  (1251.4) Adult Testis    377.3 Adult Male Accessory Gland    908.9 Adult Carcass    472.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    574.4 Larval Midgut    628.1 Larval Hindgut    653.1 Larval Malpighian Tubules    1100.5 Larval Fat Body    702.4 Larval Salivary Gland    943.6 Larval Trachea    574.225 Larval Carcass    1035.95 Adult Head    387.4 Adult Eye    341.6 Adult Brain    482.6 Adult Thoracic-Abdominal Ganglion    455.9 Adult Crop    623.7 Adult Midgut    543.8 Adult Hindgut    441.4 Adult Malpighian Tubules    669.3 Adult Fat Body    520.8 Adult Salivary Gland    523.2 Adult Heart    556.45 Adult VirginFemale Spermatheca    329.8 Adult InseminatedFemale Spermatheca    389.1 Adult Ovary    1251.4 Adult Testis    377.3 Adult Male Accessory Gland    908.9 Adult Carcass    472.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0026777 expression level Tissue   Expression Level Larval Central Nervous System    574.4 Larval Midgut    628.1 Larval Hindgut    653.1 Larval Malpighian Tubules    1100.5 Larval Fat Body    702.4 Larval Salivary Gland    943.6 Larval Trachea    574.225 Larval Carcass    1035.95 Adult Head    387.4 Adult Eye    341.6 Adult Brain    482.6 Adult Thoracic-Abdominal Ganglion    455.9 Adult Crop    623.7 Adult Midgut    543.8 Adult Hindgut    441.4 Adult Malpighian Tubules    669.3 Adult Fat Body    520.8 Adult Salivary Gland    523.2 Adult Heart    556.45 Adult VirginFemale Spermatheca    329.8 Adult InseminatedFemale Spermatheca    389.1 Adult Ovary    1251.4 Adult Testis    377.3 Adult Male Accessory Gland    908.9 Adult Carcass    472.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  574.4 Larval Midgut  628.1 Larval Hindgut  653.1 Larval Malpighian Tubules  (1100.5) Larval Fat Body  702.4 Larval Salivary Gland  (943.6) Larval Trachea  574.225 Larval Carcass  (1035.95) Adult Head    387.4 Adult Eye    341.6 Adult Brain    482.6 Adult Thoracic-Abdominal Ganglion    455.9 Adult Crop  623.7 Adult Midgut  543.8 Adult Hindgut    441.4 Adult Malpighian Tubules  669.3 Adult Fat Body  520.8 Adult Salivary Gland  523.2 Adult Heart  556.45 Adult VirginFemale Spermatheca    329.8 Adult InseminatedFemale Spermatheca    389.1 Adult Ovary  (1251.4) Adult Testis    377.3 Adult Male Accessory Gland  (908.9) Adult Carcass    472.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    574.4 Larval Midgut    628.1 Larval Hindgut    653.1 Larval Malpighian Tubules  1100.5 Larval Fat Body    702.4 Larval Salivary Gland    943.6 Larval Trachea    574.225 Larval Carcass  1035.95 Adult Head    387.4 Adult Eye    341.6 Adult Brain    482.6 Adult Thoracic-Abdominal Ganglion    455.9 Adult Crop    623.7 Adult Midgut    543.8 Adult Hindgut    441.4 Adult Malpighian Tubules    669.3 Adult Fat Body    520.8 Adult Salivary Gland    523.2 Adult Heart    556.45 Adult VirginFemale Spermatheca    329.8 Adult InseminatedFemale Spermatheca    389.1 Adult Ovary  1251.4 Adult Testis    377.3 Adult Male Accessory Gland    908.9 Adult Carcass    472.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    574.4 Larval Midgut    628.1 Larval Hindgut    653.1 Larval Malpighian Tubules    1100.5 Larval Fat Body    702.4 Larval Salivary Gland    943.6 Larval Trachea    574.225 Larval Carcass    1035.95 Adult Head    387.4 Adult Eye    341.6 Adult Brain    482.6 Adult Thoracic-Abdominal Ganglion    455.9 Adult Crop    623.7 Adult Midgut    543.8 Adult Hindgut    441.4 Adult Malpighian Tubules    669.3 Adult Fat Body    520.8 Adult Salivary Gland    523.2 Adult Heart    556.45 Adult VirginFemale Spermatheca    329.8 Adult InseminatedFemale Spermatheca    389.1 Adult Ovary    1251.4 Adult Testis    377.3 Adult Male Accessory Gland    908.9 Adult Carcass    472.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    387.4   NA  Eye    341.6   NA  Brain    482.6   574.4  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    455.9   NA  Crop    623.7   628.1  Midgut    543.8   653.1  Hindgut    441.4   1100.5  Malpighian Tubules    669.3   702.4  Fat Body    520.8   943.6  Salivary Gland    523.2   NA  Heart    556.45   574.225  Trachea    NA   NA  VirginFemale Spermatheca    329.8   NA  InseminatedFemale Spermatheca    389.1   NA  Ovary    1251.4   NA  Testis    377.3   NA  Male Accessory Gland    908.9   1035.95  Carcass    472.5 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_05
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0026777 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1836-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Rad23 Stages(s) 7-8 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 Rad23GD4245 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Rad23 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Rad23 Class Mutagen Stocks Known lesion Rad23GD4245 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes Rad23KK107826 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(4)5-M275 (Sun et al., 2004)
Duplicated in	Dp(4;4)5-M345 (Sun et al., 2004) Dp(4;4)6-M180 (Sun et al., 2004) Dp(4;4)6-M397 (Sun et al., 2004)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4245} NA P{KK107826} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
damaged DNA binding inferred from sequence or structural similarity with Saccharomyces RAD23 (FlyBase, 1992-)
Biological Process
CV term Evidence References
nucleotide-excision repair inferred from sequence or structural similarity with Saccharomyces RAD23 (FlyBase, 1992-) non-traceable author statement (Brodsky, 1999.3.2) proteasomal ubiquitin-dependent protein catabolic process inferred from electronic annotation with InterPro:IPR015360 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
nucleus inferred from electronic annotation with InterPro:IPR004806 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Rad23 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 68619 DroID - A comprehensive database of gene and protein interactions. • FBgn0026777 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43785
Orthologs
Genome-wide drosophilid orthologs	Dana\GF19257 Dere\GG16385 Dgri\GH23932 Dmoj\GI14087 Dper\GL18167 Dpse\GA14903 Dsec\GM26792 Dsim\Rad23 Dvir\GJ16257 Dwil\GK13711 Dyak\GE14546
Curated drosophilid orthologs	Dpse\GA14903   Dsim\Rad23
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL002077-PA Aedes aegypti (mosquito) AGAP000733-PA Anopheles gambiae (mosquito) XP_623093.1 Apis mellifera (honey bee) NP_001119685.1 Acyrthosiphon pisum (pea aphid) At1g16190.1 Arabidopsis thaliana (wall cress) 16317 Batrachochytrium dendrobatidis (chytrid fungus) 60393 Branchiostoma floridae (lancelet) BGIBMGA006819-PA Bombyx mori (silk worm) ENSBTAP00000020113 Bos taurus (bovine) CAL0004779 Candida albicans (a form of yeast) CN17620 Caenorhabditis brenneri (small nematode) CBP35756 Caenorhabditis briggsae (nematode) CE42949 Caenorhabditis elegans (worm) ENSCAFP00000025166 Canis familiaris (dog) CAGL0L01309g Candida glabrata (haploid yeast) Chro.70524 Cryptosporidium hominis (obligate parasite) ENSCINP00000017031 Ciona intestinalis (sea squirt) JA17339 Caenorhabditis japonica (nematode) CMK054C Cyanidioschyzon merolae (red alga) cgd7_4730 Cryptosporidium parvum (protozoan parasite) ENSCPOP00000007496 Cavia porcellus (guinea pig) 80907 Chlamidomonas reinhardtii (green alga) RP44880 Caenorhabditis remanei (nematode) ENSCSAVP00000009312 Ciona savignyi (sedentary tunicate) 148202 Capitella spl (polychaete worm) DDB0191177 Dictyostelium discoideum (amoeba) 299929 Daphnia pulex (daphnia) ENSDARP00000067850 Danio rerio (zebra fish) ENSECAP00000019588 Equus caballus (horse) ENSGACP00000007667 Gymnopilus aculeatus (mushroom) ENSGALP00000025005 Gallus gallus (chicken) 185916 Hypsipyla robusta (cedar shoot borer) ENSP00000350708 Homo sapiens (human) ISCW011548-PA Ixodes scapularis (deer tick) KLLA0E22133g Kluyveromyces lactis (yeast) 54396 Lottia gigantea (owl limpet) LmjF30.3300 Leishmania major (virus) 20821 Monocosta brevicollis (choanoflagellate) ENSMODP00000018210 Monodelphis domestica (gray opossum) ENSMMUP00000019602 Macaca mulatta (rhesus monkey) ENSMUSP00000003911 Mus musculus (house mouse) ENSMUSP00000030134 Mus musculus (house mouse) 246958 Nematostella vectensis (starlet anemone) XP_001608155.1 Nasonia vitripennis (wasp) ENSOANP00000015542 Ornithorynchus anatinus (platypus) ENSORLP00000007072 Oryzias latipes (japanese killifish) LOC_Os02g08300.1 Oryza sativa (asian rice) 35172 Ostreococcus tauri (green alga) PF10_0114 Plasmodium falciparum (protozoal parasite) PHUM002902-PA Pediculus humanus (human body louse) PP08990 Pristionchus pacificus (nematode) 126053 Physcomitrella patens (moss) 148936 Physcomitrella patens (moss) ENSPPYP00000021817 Pongo pygmaeus (orangutan) 49740 Phytophthora ramorum (sudden oak death pathogen) 266206 Populus trichocarpa (black cottonwood) ENSPTRP00000036267 Pan troglodytes (chimpanzee) PVX_094805 Plasmodium vivax (protozoal parasite) ENSRNOP00000021629 Rattus norvegicus (norway rat) 4897215 Sorghum bicolor (sorghum) YEL037C Saccharomyces cerevisiae (budding yeast) Smp_061920.1 Schistosoma mansoni (trematode parasite) SPBC2D10.12 Schizosaccharomyces pombe (fission yeast) XP_001176797.1 Strongylocentrotus purpuratus (purple sea urchin) 58050 Trichoplax adhaerens (metazoa) TA06130 Theileria annulata (apicomplexan parasite) XP_974357.1 Tribolium castaneum (red flour beetle) Tc00.1047053506833.60 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053511731.10 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000006323 Tetraodon nigroviridis (green spotted pufferfish) TP01_0871 Theileria parva (parasitic protozoan) 263031 Thalassiosira pseudonana (marine diatom) ENSTRUP00000023298 Takifugu rubripes (pufferfish Takifugu) 1.m00883 Tetrahymena thermophila (ciliate protozoa) 90925.m00109 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000012666 Xenopus tropicalis (frog) YALI0D16401g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV10529 LH24087 ISCW011548 FBgn0232146 FBgn0215719 FBgn0203442 FBgn0069498 FBgn0181645 JGI_V11_299929 FBgn0074929 FBgn0155770 FBgn0136841 FBgn0131389 FBgn0108617 FBgn0096268 BGIBMGA006819 ACYPI000077 GB11667 AGAP000733 AAEL002077 PB23655 PHUM375790 PHUM577750 GLEAN_15662
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
VDRC	v104354 P{KK107826}VIE-260B v30497 w1118; P{GD4245}v30497 v30498 w1118; P{GD4245}v30498
Genomic Clones ( 1 )
	BACR33O09 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 66 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD10153
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GM04228 GM05838 GM09045 LD01387 LD03456 LD03690 LD04468 LD05995 LD12226 LD14364 LD14474 LD19677 LD19689 LD20880 LD21014 LD26309 LD27994 LD37746 LD42028 LD44876 RE05929 RE08223 RE09821 RE14854 RE17742 RE18346 RE23007 RE24607 RE27228 RE34962 RE35401 RE37282 RE41390 RE53651 RE55877 RE56507 RE65332 RE70212 SD09150
Other clones	16943 29998.1 60630 83070 97496 172631 569875 CK01.54D.H3 EC12805 EC14918 EC14920 EC25029 EC26771 EC43718 EK044430 EK128946 EK187948 EK216729 EK274150 EN15763 FGH101B08 FGH104F09 FGM305D08 FGM317C01 GH02448 LD46013
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0026777 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43785
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Rad23 CG1836 (Milshina, 1999.11)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_143661 NM_166752 RefSeq (Proteins) • NP_651918 NP_726561 DDBJ / EMBL / GenBank • AA391482 AAD33594 AAD33695 AAF59352 AAN06526 AF132147 AF136606 Entrez Gene - A searchable database of RefSeq genes. • 43785 UniProtKB/TrEMBL • Q8IMB7 Q9V3W9 Q9XZE0
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (IPR015940) Ubiquitin-associated/translation elongation factor EF1B, N-terminal (IPR000449) Ubiquitin (IPR000626) UV excision repair protein Rad23 (IPR004806) Heat shock chaperonin-binding (IPR006636) UBA-like (IPR009060) XPC-binding domain (IPR015360) Ubiquitin supergroup (IPR019955)
Linkouts
	BioGRID - A database of protein and genetic interactions • 68619 DroID - A comprehensive database of gene and protein interactions. • FBgn0026777 DRSC - Results from RNAi screens. • FBgn0026777 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0026777 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1836-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0026777 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43785 InParanoid A subset of ortholog calls from InParanoid. • AAEL002077-PA Aedes aegypti (mosquito) AGAP000733-PA Anopheles gambiae (mosquito) XP_623093.1 Apis mellifera (honey bee) NP_001119685.1 Acyrthosiphon pisum (pea aphid) At1g16190.1 Arabidopsis thaliana (wall cress) 16317 Batrachochytrium dendrobatidis (chytrid fungus) 60393 Branchiostoma floridae (lancelet) BGIBMGA006819-PA Bombyx mori (silk worm) ENSBTAP00000020113 Bos taurus (bovine) CAL0004779 Candida albicans (a form of yeast) CN17620 Caenorhabditis brenneri (small nematode) CBP35756 Caenorhabditis briggsae (nematode) CE42949 Caenorhabditis elegans (worm) ENSCAFP00000025166 Canis familiaris (dog) CAGL0L01309g Candida glabrata (haploid yeast) Chro.70524 Cryptosporidium hominis (obligate parasite) ENSCINP00000017031 Ciona intestinalis (sea squirt) JA17339 Caenorhabditis japonica (nematode) CMK054C Cyanidioschyzon merolae (red alga) cgd7_4730 Cryptosporidium parvum (protozoan parasite) ENSCPOP00000007496 Cavia porcellus (guinea pig) 80907 Chlamidomonas reinhardtii (green alga) RP44880 Caenorhabditis remanei (nematode) ENSCSAVP00000009312 Ciona savignyi (sedentary tunicate) 148202 Capitella spl (polychaete worm) DDB0191177 Dictyostelium discoideum (amoeba) 299929 Daphnia pulex (daphnia) ENSDARP00000067850 Danio rerio (zebra fish) ENSECAP00000019588 Equus caballus (horse) ENSGACP00000007667 Gymnopilus aculeatus (mushroom) ENSGALP00000025005 Gallus gallus (chicken) 185916 Hypsipyla robusta (cedar shoot borer) ENSP00000350708 Homo sapiens (human) ISCW011548-PA Ixodes scapularis (deer tick) KLLA0E22133g Kluyveromyces lactis (yeast) 54396 Lottia gigantea (owl limpet) LmjF30.3300 Leishmania major (virus) 20821 Monocosta brevicollis (choanoflagellate) ENSMODP00000018210 Monodelphis domestica (gray opossum) ENSMMUP00000019602 Macaca mulatta (rhesus monkey) ENSMUSP00000003911 Mus musculus (house mouse) ENSMUSP00000030134 Mus musculus (house mouse) 246958 Nematostella vectensis (starlet anemone) XP_001608155.1 Nasonia vitripennis (wasp) ENSOANP00000015542 Ornithorynchus anatinus (platypus) ENSORLP00000007072 Oryzias latipes (japanese killifish) LOC_Os02g08300.1 Oryza sativa (asian rice) 35172 Ostreococcus tauri (green alga) PF10_0114 Plasmodium falciparum (protozoal parasite) PHUM002902-PA Pediculus humanus (human body louse) PP08990 Pristionchus pacificus (nematode) 126053 Physcomitrella patens (moss) 148936 Physcomitrella patens (moss) ENSPPYP00000021817 Pongo pygmaeus (orangutan) 49740 Phytophthora ramorum (sudden oak death pathogen) 266206 Populus trichocarpa (black cottonwood) ENSPTRP00000036267 Pan troglodytes (chimpanzee) PVX_094805 Plasmodium vivax (protozoal parasite) ENSRNOP00000021629 Rattus norvegicus (norway rat) 4897215 Sorghum bicolor (sorghum) YEL037C Saccharomyces cerevisiae (budding yeast) Smp_061920.1 Schistosoma mansoni (trematode parasite) SPBC2D10.12 Schizosaccharomyces pombe (fission yeast) XP_001176797.1 Strongylocentrotus purpuratus (purple sea urchin) 58050 Trichoplax adhaerens (metazoa) TA06130 Theileria annulata (apicomplexan parasite) XP_974357.1 Tribolium castaneum (red flour beetle) Tc00.1047053506833.60 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053511731.10 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000006323 Tetraodon nigroviridis (green spotted pufferfish) TP01_0871 Theileria parva (parasitic protozoan) 263031 Thalassiosira pseudonana (marine diatom) ENSTRUP00000023298 Takifugu rubripes (pufferfish Takifugu) 1.m00883 Tetrahymena thermophila (ciliate protozoa) 90925.m00109 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000012666 Xenopus tropicalis (frog) YALI0D16401g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43785 modMine - Data generated by the modENCODE project. • FBgn0026777 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV10529 LH24087 ISCW011548 FBgn0232146 FBgn0215719 FBgn0203442 FBgn0069498 FBgn0181645 JGI_V11_299929 FBgn0074929 FBgn0155770 FBgn0136841 FBgn0131389 FBgn0108617 FBgn0096268 BGIBMGA006819 ACYPI000077 GB11667 AGAP000733 AAEL002077 PB23655 PHUM375790 PHUM577750 GLEAN_15662
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	CG1836 (Dorer et al., 2006, Keleman et al., 2009.8.5) DHR23 (Soldatov, 1999.3.23, ) rad23 (Li and White, 2003, Brodsky, 1999.3.2) Rad23 (Lipinszki et al., 2009, Franco et al., 2011) RAD23 (Dorer et al., 2006, Still et al., 2004)
Name Synonym	Rad23
Secondary FlyBase IDs
References ( 23 )
Generate a list of	All references relating to this gene ( 23 )
List References by type	Research paper  ( 9 ) Supplementary material  ( 3 ) Personal communication to FlyBase  ( 3 ) FlyBase analysis  ( 1 ) DNA/RNA sequence record  ( 2 ) Curated genome annotation  ( 2 ) Computer file  ( 1 ) Automatic genome annotation  ( 1 )
Recent research papers ( 1 )
	Franco et al., 2011, Mol. Cell. Proteomics 10(5): M110.002188 A Novel Strategy to Isolate Ubiquitin Conjugates Reveals Wide Role for Ubiquitination during Neural Development. [FBrf0213919] Show all research papers ...