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Gene Dmel\Aats-leu

General Information
Symbol	Dmel\Aats-leu	Species	D. melanogaster
Name	Leucyl-tRNA synthetase	Annotation symbol	CG7479
Feature type	protein_coding_gene	FlyBase ID	FBgn0027085
Gene Model Status	Current	Stock availability	2 publicly available
Also Known As	LeuRS
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	64C1-64C1	Sequence location	3L:4,825,858..4,829,039 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Leucyl-tRNA synthetase is referred to in FlyBase by the symbol Dmel\Aats-leu (CG7479, FBgn0027085). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: leucine-tRNA ligase activity. Based on sequence similarity, it is predicted to be involved in the biological process: leucyl-tRNA aminoacylation. 3 alleles are reported. The phenotype of these alleles is annotated with: trichogen cell. It has one annotated transcript and one annotated polypeptide. Protein features are: Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; Aminoacyl-tRNA synthetase, class I (M); Aminoacyl-tRNA synthetase, class I, conserved site; Aminoacyl-tRNA synthetase, class Ia; Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; Rossmann-like alpha/beta/alpha sandwich fold; Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult central nervous system, adult salivary gland, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1623460_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Aats-leu. Gene sequence location is 3L:4825858..4829039.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01	Sequence features BKN20536 HFA08595 BKN45012
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 64C1-64C1   Limits computationally determined from genome sequence between P{PZ}l(3)rG166rG166 and P{PZ}sinu06524
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Aats-leu for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Aats-leu-RA FBtr0073348  NM_139675   3016   869
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Aats-leu-PA   FBpp0073204   99.3   869   8.14     NP_647932   AAF47943
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Aminoacyl-tRNA synthetase, class I, conserved site (IPR001412) Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial (IPR002302) Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (IPR009080) Rossmann-like alpha/beta/alpha sandwich fold (IPR014729) Aminoacyl-tRNA synthetase, class I (M) (IPR015413) Aminoacyl-tRNA synthetase, class Ia (IPR002300) Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (IPR013155) MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins • MTDROME07479
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA802711   AA803053   AE014296 AAF47943   AI260770   AI388755   AI512488   AI533376   AI543581   AI546710   AW943719   AY089557 AAL90295   BI372726   BI372805   BI373394   CK658294   CO277334   CO308475   CO343183   EC066246   EC232270   EC258460   EV582737   GH750214   GH750603   GH755734   GH761269   GH771329   GH771840   GH771884   GH772062   GH772325   GH775085   GH776353   GH777160   GH781346   GH785017   GH785766   GH786279   GH788665   GH790773   GH791322   GH797891   GH801268   GH801708   GH810468   GH812128   GH816194   GH818741   GH819631   GH820978   GH823407   GH825279   GH825624   GH831070   GH831405   GH832974   GH843606   GH854867   GH859445   GH860509   GH864836   GH865111   GH865651   GH868692   GH871410   GH872051   GH875240   GH876799   GH884016   GH903798   GH908002   GH909758   GH910858   GH914779   GH915519   GH918048   GH921342   GH924139   GH930711   GH938481   GH939589
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VZ82
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage   organism | ubiquitous   (Seshaiah and Andrew, 1999)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Dorus et al., 2006)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0027085    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0027085 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0027085 expression level Developmental Stage   Expression Level embryo 00-02hr    1808 embryo 02-04hr    659 embryo 04-06hr    864 embryo 06-08hr    862 embryo 08-10hr    1029 embryo 10-12hr    1304 embryo 12-14hr    1023 embryo 14-16hr    984 embryo 16-18hr    906 embryo 18-20hr    736 embryo 20-22hr    607 embryo 22-24hr    616 larva L1    886 larva L2    1085 larva L3 12hr old    787 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    315 larva L3 puffstage 7-9    394 white prepupae new    384 white prepupae 12hr    366 white prepupae 24hr    388 pupae 2d postWPP    738 pupae 3d postWPP    518 pupae 4d postWPP    343 adult male 01day    442 adult male 05day    395 adult male 30day    392 adult female 01day    786 adult female 05day    1235 adult female 30day    1261 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1808) embryo 02-04hr  (659) embryo 04-06hr  (864) embryo 06-08hr  (862) embryo 08-10hr  (1029) embryo 10-12hr  (1304) embryo 12-14hr  (1023) embryo 14-16hr  (984) embryo 16-18hr  (906) embryo 18-20hr  (736) embryo 20-22hr  (607) embryo 22-24hr  (616) larva L1  (886) larva L2  (1085) larva L3 12hr old  (787) larva L3 puffstage 1-2  (306) larva L3 puffstage 3-6  (315) larva L3 puffstage 7-9  (394) white prepupae new  (384) white prepupae 12hr  (366) white prepupae 24hr  (388) pupae 2d postWPP  (738) pupae 3d postWPP  (518) pupae 4d postWPP  (343) adult male 01day  (442) adult male 05day  (395) adult male 30day  (392) adult female 01day  (786) adult female 05day  (1235) adult female 30day  (1261) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1808) embryo 02-04hr    659 embryo 04-06hr    864 embryo 06-08hr    862 embryo 08-10hr    1029 embryo 10-12hr    1304 embryo 12-14hr    1023 embryo 14-16hr    984 embryo 16-18hr    906 embryo 18-20hr    736 embryo 20-22hr    607 embryo 22-24hr    616 larva L1    886 larva L2    1085 larva L3 12hr old    787 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    315 larva L3 puffstage 7-9    394 white prepupae new    384 white prepupae 12hr    366 white prepupae 24hr    388 pupae 2d postWPP    738 pupae 3d postWPP    518 pupae 4d postWPP    343 adult male 01day    442 adult male 05day    395 adult male 30day    392 adult female 01day    786 adult female 05day    1235 adult female 30day    1261 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1808 embryo 02-04hr    659 embryo 04-06hr    864 embryo 06-08hr    862 embryo 08-10hr    1029 embryo 10-12hr    1304 embryo 12-14hr    1023 embryo 14-16hr    984 embryo 16-18hr    906 embryo 18-20hr    736 embryo 20-22hr    607 embryo 22-24hr    616 larva L1    886 larva L2    1085 larva L3 12hr old    787 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    315 larva L3 puffstage 7-9    394 white prepupae new    384 white prepupae 12hr    366 white prepupae 24hr    388 pupae 2d postWPP    738 pupae 3d postWPP    518 pupae 4d postWPP    343 adult male 01day    442 adult male 05day    395 adult male 30day    392 adult female 01day    786 adult female 05day    1235 adult female 30day    1261 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1808 embryo 02-04hr    659 embryo 04-06hr    864 embryo 06-08hr    862 embryo 08-10hr    1029 embryo 10-12hr    1304 embryo 12-14hr    1023 embryo 14-16hr    984 embryo 16-18hr    906 embryo 18-20hr    736 embryo 20-22hr    607 embryo 22-24hr    616 larva L1    886 larva L2    1085 larva L3 12hr old    787 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    315 larva L3 puffstage 7-9    394 white prepupae new    384 white prepupae 12hr    366 white prepupae 24hr    388 pupae 2d postWPP    738 pupae 3d postWPP    518 pupae 4d postWPP    343 adult male 01day    442 adult male 05day    395 adult male 30day    392 adult female 01day    786 adult female 05day    1235 adult female 30day    1261 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0027085 expression level Developmental Stage   Expression Level embryo 00-02hr    1808 embryo 02-04hr    659 embryo 04-06hr    864 embryo 06-08hr    862 embryo 08-10hr    1029 embryo 10-12hr    1304 embryo 12-14hr    1023 embryo 14-16hr    984 embryo 16-18hr    906 embryo 18-20hr    736 embryo 20-22hr    607 embryo 22-24hr    616 larva L1    886 larva L2    1085 larva L3 12hr old    787 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    315 larva L3 puffstage 7-9    394 white prepupae new    384 white prepupae 12hr    366 white prepupae 24hr    388 pupae 2d postWPP    738 pupae 3d postWPP    518 pupae 4d postWPP    343 adult male 01day    442 adult male 05day    395 adult male 30day    392 adult female 01day    786 adult female 05day    1235 adult female 30day    1261 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1808) embryo 02-04hr  (659) embryo 04-06hr  (864) embryo 06-08hr  (862) embryo 08-10hr  (1029) embryo 10-12hr  (1304) embryo 12-14hr  (1023) embryo 14-16hr  (984) embryo 16-18hr  (906) embryo 18-20hr  (736) embryo 20-22hr  (607) embryo 22-24hr  (616) larva L1  (886) larva L2  (1085) larva L3 12hr old  (787) larva L3 puffstage 1-2  (306) larva L3 puffstage 3-6  (315) larva L3 puffstage 7-9  (394) white prepupae new  (384) white prepupae 12hr  (366) white prepupae 24hr  (388) pupae 2d postWPP  (738) pupae 3d postWPP  (518) pupae 4d postWPP  (343) adult male 01day  (442) adult male 05day  (395) adult male 30day  (392) adult female 01day  (786) adult female 05day  (1235) adult female 30day  (1261) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  1808 embryo 02-04hr    659 embryo 04-06hr    864 embryo 06-08hr    862 embryo 08-10hr    1029 embryo 10-12hr    1304 embryo 12-14hr    1023 embryo 14-16hr    984 embryo 16-18hr    906 embryo 18-20hr    736 embryo 20-22hr    607 embryo 22-24hr    616 larva L1    886 larva L2    1085 larva L3 12hr old    787 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    315 larva L3 puffstage 7-9    394 white prepupae new    384 white prepupae 12hr    366 white prepupae 24hr    388 pupae 2d postWPP    738 pupae 3d postWPP    518 pupae 4d postWPP    343 adult male 01day    442 adult male 05day    395 adult male 30day    392 adult female 01day    786 adult female 05day    1235 adult female 30day    1261 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1808 embryo 02-04hr    659 embryo 04-06hr    864 embryo 06-08hr    862 embryo 08-10hr    1029 embryo 10-12hr    1304 embryo 12-14hr    1023 embryo 14-16hr    984 embryo 16-18hr    906 embryo 18-20hr    736 embryo 20-22hr    607 embryo 22-24hr    616 larva L1    886 larva L2    1085 larva L3 12hr old    787 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    315 larva L3 puffstage 7-9    394 white prepupae new    384 white prepupae 12hr    366 white prepupae 24hr    388 pupae 2d postWPP    738 pupae 3d postWPP    518 pupae 4d postWPP    343 adult male 01day    442 adult male 05day    395 adult male 30day    392 adult female 01day    786 adult female 05day    1235 adult female 30day    1261 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1808 embryo 02-04hr    659 embryo 04-06hr    864 embryo 06-08hr    862 embryo 08-10hr    1029 embryo 10-12hr    1304 embryo 12-14hr    1023 embryo 14-16hr    984 embryo 16-18hr    906 embryo 18-20hr    736 embryo 20-22hr    607 embryo 22-24hr    616 larva L1    886 larva L2    1085 larva L3 12hr old    787 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    315 larva L3 puffstage 7-9    394 white prepupae new    384 white prepupae 12hr    366 white prepupae 24hr    388 pupae 2d postWPP    738 pupae 3d postWPP    518 pupae 4d postWPP    343 adult male 01day    442 adult male 05day    395 adult male 30day    392 adult female 01day    786 adult female 05day    1235 adult female 30day    1261 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0027085    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0027085 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult central nervous system, adult salivary gland, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0027085 expression level Tissue   Expression Level Larval Central Nervous System    92.725 Larval Midgut    62 Larval Hindgut    77.2 Larval Malpighian Tubules    64.6 Larval Fat Body    30.9 Larval Salivary Gland    82.6 Larval Trachea    59.3 Larval Carcass    86.525 Adult Head    62.7 Adult Eye    62.775 Adult Brain    115.4 Adult Thoracic-Abdominal Ganglion    134.9 Adult Crop    80.4 Adult Midgut    70.9 Adult Hindgut    65 Adult Malpighian Tubules    92.6 Adult Fat Body    89.6 Adult Salivary Gland    114.6 Adult Heart    66.075 Adult VirginFemale Spermatheca    43.9 Adult InseminatedFemale Spermatheca    49.7 Adult Ovary    168.8 Adult Testis    27.4 Adult Male Accessory Gland    79.8 Adult Carcass    73 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    92.725 Larval Midgut    62 Larval Hindgut    77.2 Larval Malpighian Tubules    64.6 Larval Fat Body    30.9 Larval Salivary Gland    82.6 Larval Trachea    59.3 Larval Carcass    86.525 Adult Head    62.7 Adult Eye    62.775 Adult Brain    115.4 Adult Thoracic-Abdominal Ganglion    134.9 Adult Crop    80.4 Adult Midgut    70.9 Adult Hindgut    65 Adult Malpighian Tubules    92.6 Adult Fat Body    89.6 Adult Salivary Gland    114.6 Adult Heart    66.075 Adult VirginFemale Spermatheca    43.9 Adult InseminatedFemale Spermatheca    49.7 Adult Ovary    168.8 Adult Testis    27.4 Adult Male Accessory Gland    79.8 Adult Carcass    73 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    92.725 Larval Midgut    62 Larval Hindgut    77.2 Larval Malpighian Tubules    64.6 Larval Fat Body    30.9 Larval Salivary Gland    82.6 Larval Trachea    59.3 Larval Carcass    86.525 Adult Head    62.7 Adult Eye    62.775 Adult Brain    115.4 Adult Thoracic-Abdominal Ganglion    134.9 Adult Crop    80.4 Adult Midgut    70.9 Adult Hindgut    65 Adult Malpighian Tubules    92.6 Adult Fat Body    89.6 Adult Salivary Gland    114.6 Adult Heart    66.075 Adult VirginFemale Spermatheca    43.9 Adult InseminatedFemale Spermatheca    49.7 Adult Ovary    168.8 Adult Testis    27.4 Adult Male Accessory Gland    79.8 Adult Carcass    73 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    92.725 Larval Midgut    62 Larval Hindgut    77.2 Larval Malpighian Tubules    64.6 Larval Fat Body    30.9 Larval Salivary Gland    82.6 Larval Trachea    59.3 Larval Carcass    86.525 Adult Head    62.7 Adult Eye    62.775 Adult Brain    115.4 Adult Thoracic-Abdominal Ganglion    134.9 Adult Crop    80.4 Adult Midgut    70.9 Adult Hindgut    65 Adult Malpighian Tubules    92.6 Adult Fat Body    89.6 Adult Salivary Gland    114.6 Adult Heart    66.075 Adult VirginFemale Spermatheca    43.9 Adult InseminatedFemale Spermatheca    49.7 Adult Ovary    168.8 Adult Testis    27.4 Adult Male Accessory Gland    79.8 Adult Carcass    73 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0027085 expression level Tissue   Expression Level Larval Central Nervous System    92.725 Larval Midgut    62 Larval Hindgut    77.2 Larval Malpighian Tubules    64.6 Larval Fat Body    30.9 Larval Salivary Gland    82.6 Larval Trachea    59.3 Larval Carcass    86.525 Adult Head    62.7 Adult Eye    62.775 Adult Brain    115.4 Adult Thoracic-Abdominal Ganglion    134.9 Adult Crop    80.4 Adult Midgut    70.9 Adult Hindgut    65 Adult Malpighian Tubules    92.6 Adult Fat Body    89.6 Adult Salivary Gland    114.6 Adult Heart    66.075 Adult VirginFemale Spermatheca    43.9 Adult InseminatedFemale Spermatheca    49.7 Adult Ovary    168.8 Adult Testis    27.4 Adult Male Accessory Gland    79.8 Adult Carcass    73 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    92.725 Larval Midgut    62 Larval Hindgut    77.2 Larval Malpighian Tubules    64.6 Larval Fat Body    30.9 Larval Salivary Gland    82.6 Larval Trachea    59.3 Larval Carcass    86.525 Adult Head    62.7 Adult Eye    62.775 Adult Brain    115.4 Adult Thoracic-Abdominal Ganglion    134.9 Adult Crop    80.4 Adult Midgut    70.9 Adult Hindgut    65 Adult Malpighian Tubules    92.6 Adult Fat Body    89.6 Adult Salivary Gland    114.6 Adult Heart    66.075 Adult VirginFemale Spermatheca    43.9 Adult InseminatedFemale Spermatheca    49.7 Adult Ovary    168.8 Adult Testis    27.4 Adult Male Accessory Gland    79.8 Adult Carcass    73 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    92.725 Larval Midgut    62 Larval Hindgut    77.2 Larval Malpighian Tubules    64.6 Larval Fat Body    30.9 Larval Salivary Gland    82.6 Larval Trachea    59.3 Larval Carcass    86.525 Adult Head    62.7 Adult Eye    62.775 Adult Brain    115.4 Adult Thoracic-Abdominal Ganglion    134.9 Adult Crop    80.4 Adult Midgut    70.9 Adult Hindgut    65 Adult Malpighian Tubules    92.6 Adult Fat Body    89.6 Adult Salivary Gland    114.6 Adult Heart    66.075 Adult VirginFemale Spermatheca    43.9 Adult InseminatedFemale Spermatheca    49.7 Adult Ovary    168.8 Adult Testis    27.4 Adult Male Accessory Gland    79.8 Adult Carcass    73 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    92.725 Larval Midgut    62 Larval Hindgut    77.2 Larval Malpighian Tubules    64.6 Larval Fat Body    30.9 Larval Salivary Gland    82.6 Larval Trachea    59.3 Larval Carcass    86.525 Adult Head    62.7 Adult Eye    62.775 Adult Brain    115.4 Adult Thoracic-Abdominal Ganglion    134.9 Adult Crop    80.4 Adult Midgut    70.9 Adult Hindgut    65 Adult Malpighian Tubules    92.6 Adult Fat Body    89.6 Adult Salivary Gland    114.6 Adult Heart    66.075 Adult VirginFemale Spermatheca    43.9 Adult InseminatedFemale Spermatheca    49.7 Adult Ovary    168.8 Adult Testis    27.4 Adult Male Accessory Gland    79.8 Adult Carcass    73 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    62.7   NA  Eye    62.775   NA  Brain    115.4   92.725  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    134.9   NA  Crop    80.4   62  Midgut    70.9   77.2  Hindgut    65   64.6  Malpighian Tubules    92.6   30.9  Fat Body    89.6   82.6  Salivary Gland    114.6   NA  Heart    66.075   59.3  Trachea    NA   NA  VirginFemale Spermatheca    43.9   NA  InseminatedFemale Spermatheca    49.7   NA  Ovary    168.8   NA  Testis    27.4   NA  Male Accessory Gland    79.8   86.525  Carcass    73 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_19
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027085 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7479-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Aats-leu Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 Aats-leuGD12249 Other Phenotypes Allele decreased cell size | cell autonomous | somatic clone, with Scer\GAL4Act5C.PP Aats-leudsRNA.Scer\UAS.NIG visible, with Scer\GAL4pnr-MD237 Aats-leuGD12249 Phenotype manifest in Allele lysosome & larval fat body | somatic clone | cell autonomous, with Scer\GAL4Act5C.PP Aats-leudsRNA.Scer\UAS.NIG trichogen cell, with Scer\GAL4pnr-MD237 Aats-leuGD12249
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Aats-leu Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Aats-leu Class Mutagen Stocks Known lesion Aats-leuGD12249 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Aats-leuKK100440 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Aats-leudsRNA.Scer\UAS.NIG in vitro construct - regulatory fusion in vitro construct - RNAi 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)Exel6102 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD12249} NA P{KK100440} NA P{UAS-Aats-leu.RNAi} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term Evidence References
ATP binding inferred from electronic annotation with InterPro:IPR001412, InterPro:IPR002300, InterPro:IPR002302, InterPro:IPR009080, InterPro:IPR013155, InterPro:IPR015413 (FlyBase Curators et al., 2004-) leucine-tRNA ligase activity inferred from sequence or structural similarity with Saccharomyces NAM2 AND non-traceable author statement (FlyBase, 1992-) inferred from sequence or structural similarity with UniProtKB:Q15031 (Sardiello et al., 2003.6.11)
Biological Process
CV term Evidence References
leucyl-tRNA aminoacylation inferred from sequence or structural similarity with UniProtKB:Q15031 (Sardiello et al., 2003.6.11) non-traceable author statement (FlyBase, 1992-)
Cellular Component
CV term Evidence References
mitochondrial matrix inferred from sequence or structural similarity with UniProtKB:Q15031 (Sardiello et al., 2003.6.11) mitochondrion inferred from sequence or structural similarity with Saccharomyces NAM2 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Aats-leu allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 64050 DroID - A comprehensive database of gene and protein interactions. • FBgn0027085 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38581
Orthologs
Genome-wide drosophilid orthologs	Dana\GF25092 Dere\GG15248 Dgri\GH15697 Dmoj\GI12751 Dper\GL17916 Dpse\GA20381 Dsec\GM14681 Dsim\GD13863 Dvir\GJ15519 Dwil\GK16600 Dyak\GE21469
Curated drosophilid orthologs	Dmir\CG7479 (Thornton, 2005.12.20) Dpse\GA20381
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL007130-PA Aedes aegypti (mosquito) XP_624911.1 Apis mellifera (honey bee) At4g04350.1 Arabidopsis thaliana (wall cress) 59451 Branchiostoma floridae (lancelet) XP_001899819.1 Brugia malayi (roundworm nematode) BGIBMGA003467-PA Bombyx mori (silk worm) ENSBTAP00000009624 Bos taurus (bovine) CAL0001358 Candida albicans (a form of yeast) CN13562 Caenorhabditis brenneri (small nematode) CBP29031 Caenorhabditis briggsae (nematode) CE35160 Caenorhabditis elegans (worm) ENSCAFP00000020686 Canis familiaris (dog) CAGL0H05049g Candida glabrata (haploid yeast) ENSCINP00000007388 Ciona intestinalis (sea squirt) JA00707 Caenorhabditis japonica (nematode) CMP205C Cyanidioschyzon merolae (red alga) CPIJ007951 Culex pipens (mosquito) ENSCPOP00000007249 Cavia porcellus (guinea pig) RP42715 Caenorhabditis remanei (nematode) 228464 Capitella spl (polychaete worm) DDB0231251 Dictyostelium discoideum (amoeba) DEHA2A05038g Debaryomyces Hansenii (yeast) 318167 Daphnia pulex (daphnia) ENSECAP00000021951 Equus caballus (horse) NP_415175.1 Escherichia coli K12 (bacteria) ENSGACP00000009435 Gymnopilus aculeatus (mushroom) ENSGALP00000019350 Gallus gallus (chicken) 112157 Hypsipyla robusta (cedar shoot borer) ENSP00000265537 Homo sapiens (human) ISCW023069-PA Ixodes scapularis (deer tick) KLLA0E05325g Kluyveromyces lactis (yeast) 216293 Lottia gigantea (owl limpet) ENSMODP00000014150 Monodelphis domestica (gray opossum) ENSMMUP00000023676 Macaca mulatta (rhesus monkey) ENSMUSP00000036710 Mus musculus (house mouse) XP_001605772.1 Nasonia vitripennis (wasp) ENSORLP00000005750 Oryzias latipes (japanese killifish) LOC_Os01g03020.1 Oryza sativa (asian rice) 28462 Ostreococcus tauri (green alga) PF08_0011 Plasmodium falciparum (protozoal parasite) PHUM005344-PA Pediculus humanus (human body louse) PP21765 Pristionchus pacificus (nematode) 129339 Physcomitrella patens (moss) ENSPPYP00000015598 Pongo pygmaeus (orangutan) 85392 Phytophthora ramorum (sudden oak death pathogen) 134433 Phytophthora sojae (root rot pathogen) 233464 Populus trichocarpa (black cottonwood) ENSPTRP00000025575 Pan troglodytes (chimpanzee) PVX_088945 Plasmodium vivax (protozoal parasite) ENSRNOP00000006400 Rattus norvegicus (norway rat) 4878034 Sorghum bicolor (sorghum) YLR382C Saccharomyces cerevisiae (budding yeast) Smp_122780 Schistosoma mansoni (trematode parasite) SPAC4G8.09 Schizosaccharomyces pombe (fission yeast) XP_001188683.1 Strongylocentrotus purpuratus (purple sea urchin) TA04430 Theileria annulata (apicomplexan parasite) XP_974191.1 Tribolium castaneum (red flour beetle) ENSTNIP00000012524 Tetraodon nigroviridis (green spotted pufferfish) TP03_0416 Theileria parva (parasitic protozoan) 261684 Thalassiosira pseudonana (marine diatom) ENSTRUP00000031689 Takifugu rubripes (pufferfish Takifugu) 3830.m00534 Tetrahymena thermophila (ciliate protozoa) ENSXETP00000031535 Xenopus tropicalis (frog) YALI0F02299g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV13007 LH11008 ISCW023069 ISCW016017 FBgn0238726 FBgn0218602 FBgn0202712 FBgn0185560 FBgn0169602 JGI_V11_334969 FBgn0080376 FBgn0155519 FBgn0135508 FBgn0123168 FBgn0107500 FBgn0102084 CPIJ007951 BGIBMGA003467 GB18544 AGAP002014 AAEL007130 PB23891 PHUM024070 GLEAN_03172
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
VDRC	v103399 P{KK100440}VIE-260B v45048 w1118; P{GD12249}v45048/TM3
Genomic Clones ( 2 )
	BACR17L24 BACR31C17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 78 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD44376
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH19755 GM06190 GM06905 LP04740 LP15130 RE59778 RE59978 RE60664 SD05158 SD10378 SD10464
Other clones	5336 154344 214545.7 Dmel_dig_018379_0695_2939 EK123855 EK258411 EP16246 RP003042661 RP003055100 RP003056066 RP003066497 RP003066623 RP003069407 RP003072028 RP003073567 RP003078350 RP003090487 RP003114765 RP003135956 RP003137575 RP003149308 RP003156152 RP003167774 RP003172018 RP003185877 RP003196223 RP003200691 RP003204075 RP003209503 RP003218337 RP003220675 RP003230592 RP003233993 RP003235255 RP003237018 RP003241525 RP003247153 RP003266359 RP003270800 RP003283451 RP003287167 RP003290822 RP003292107 RP003303672 RP003309196 RP003331223 RP003346758 RP003347699 RP003364375 RP003371189 RP003384487 RP003399068 RP003401489 RP003411971 RP003456502 RP003465493 RP003477030 RP003478681 RP003478770 RP003500124 RP003568379 RP003574975 RP003604085 RP003619501 RP003647922 RP003654527
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0027085 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38581
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: Aats-leu CG7479 (FlyBase, 1996-)
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_139675 RefSeq (Proteins) • NP_647932 DDBJ / EMBL / GenBank • AA803053 AAF47943 AAL90295 AI512488 AW943719 AY089557 Entrez Gene - A searchable database of RefSeq genes. • 38581 UniProtKB/TrEMBL • Q9VZ82
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Aminoacyl-tRNA synthetase, class I, conserved site (IPR001412) Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial (IPR002302) Aminoacyl-tRNA synthetase, class 1a, anticodon-binding (IPR009080) Rossmann-like alpha/beta/alpha sandwich fold (IPR014729) Aminoacyl-tRNA synthetase, class I (M) (IPR015413) Aminoacyl-tRNA synthetase, class Ia (IPR002300) Valyl/Leucyl/Isoleucyl-tRNA synthetase, class I, anticodon-binding (IPR013155) MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins • MTDROME07479
Linkouts
	BioGRID - A database of protein and genetic interactions • 64050 DroID - A comprehensive database of gene and protein interactions. • FBgn0027085 DRSC - Results from RNAi screens. • FBgn0027085 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027085 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7479-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0027085 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38581 InParanoid A subset of ortholog calls from InParanoid. • AAEL007130-PA Aedes aegypti (mosquito) XP_624911.1 Apis mellifera (honey bee) At4g04350.1 Arabidopsis thaliana (wall cress) 59451 Branchiostoma floridae (lancelet) XP_001899819.1 Brugia malayi (roundworm nematode) BGIBMGA003467-PA Bombyx mori (silk worm) ENSBTAP00000009624 Bos taurus (bovine) CAL0001358 Candida albicans (a form of yeast) CN13562 Caenorhabditis brenneri (small nematode) CBP29031 Caenorhabditis briggsae (nematode) CE35160 Caenorhabditis elegans (worm) ENSCAFP00000020686 Canis familiaris (dog) CAGL0H05049g Candida glabrata (haploid yeast) ENSCINP00000007388 Ciona intestinalis (sea squirt) JA00707 Caenorhabditis japonica (nematode) CMP205C Cyanidioschyzon merolae (red alga) CPIJ007951 Culex pipens (mosquito) ENSCPOP00000007249 Cavia porcellus (guinea pig) RP42715 Caenorhabditis remanei (nematode) 228464 Capitella spl (polychaete worm) DDB0231251 Dictyostelium discoideum (amoeba) DEHA2A05038g Debaryomyces Hansenii (yeast) 318167 Daphnia pulex (daphnia) ENSECAP00000021951 Equus caballus (horse) NP_415175.1 Escherichia coli K12 (bacteria) ENSGACP00000009435 Gymnopilus aculeatus (mushroom) ENSGALP00000019350 Gallus gallus (chicken) 112157 Hypsipyla robusta (cedar shoot borer) ENSP00000265537 Homo sapiens (human) ISCW023069-PA Ixodes scapularis (deer tick) KLLA0E05325g Kluyveromyces lactis (yeast) 216293 Lottia gigantea (owl limpet) ENSMODP00000014150 Monodelphis domestica (gray opossum) ENSMMUP00000023676 Macaca mulatta (rhesus monkey) ENSMUSP00000036710 Mus musculus (house mouse) XP_001605772.1 Nasonia vitripennis (wasp) ENSORLP00000005750 Oryzias latipes (japanese killifish) LOC_Os01g03020.1 Oryza sativa (asian rice) 28462 Ostreococcus tauri (green alga) PF08_0011 Plasmodium falciparum (protozoal parasite) PHUM005344-PA Pediculus humanus (human body louse) PP21765 Pristionchus pacificus (nematode) 129339 Physcomitrella patens (moss) ENSPPYP00000015598 Pongo pygmaeus (orangutan) 85392 Phytophthora ramorum (sudden oak death pathogen) 134433 Phytophthora sojae (root rot pathogen) 233464 Populus trichocarpa (black cottonwood) ENSPTRP00000025575 Pan troglodytes (chimpanzee) PVX_088945 Plasmodium vivax (protozoal parasite) ENSRNOP00000006400 Rattus norvegicus (norway rat) 4878034 Sorghum bicolor (sorghum) YLR382C Saccharomyces cerevisiae (budding yeast) Smp_122780 Schistosoma mansoni (trematode parasite) SPAC4G8.09 Schizosaccharomyces pombe (fission yeast) XP_001188683.1 Strongylocentrotus purpuratus (purple sea urchin) TA04430 Theileria annulata (apicomplexan parasite) XP_974191.1 Tribolium castaneum (red flour beetle) ENSTNIP00000012524 Tetraodon nigroviridis (green spotted pufferfish) TP03_0416 Theileria parva (parasitic protozoan) 261684 Thalassiosira pseudonana (marine diatom) ENSTRUP00000031689 Takifugu rubripes (pufferfish Takifugu) 3830.m00534 Tetrahymena thermophila (ciliate protozoa) ENSXETP00000031535 Xenopus tropicalis (frog) YALI0F02299g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38581 modMine - Data generated by the modENCODE project. • FBgn0027085 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV13007 LH11008 ISCW023069 ISCW016017 FBgn0238726 FBgn0218602 FBgn0202712 FBgn0185560 FBgn0169602 JGI_V11_334969 FBgn0080376 FBgn0155519 FBgn0135508 FBgn0123168 FBgn0107500 FBgn0102084 CPIJ007951 BGIBMGA003467 GB18544 AGAP002014 AAEL007130 PB23891 PHUM024070 GLEAN_03172
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	Aats-leu (Dorus et al., 2006) CG7479 (Keleman et al., 2009.8.5) LeuRS (Seshaiah and Andrew, 1999.7.29, Arsham and Neufeld, 2009) LRS (Seshaiah and Andrew, 1999)
Name Synonym	Leucyl-tRNA synthetase (Seshaiah and Andrew, 1999)
Secondary FlyBase IDs
	FBgn0035576
References ( 17 )
Research paper	Arsham and Neufeld, 2009, PLoS ONE 4(6): e6068 A genetic screen in Drosophila reveals novel cytoprotective functions of the autophagy-lysosome pathway. [FBrf0208155] Seshaiah and Andrew, 1999, Molec. Biol. Cell 10(5): 1595--1608 WRS-85D: A tryptophanyl-tRNA synthetase expressed to high levels in the developing Drosophila salivary gland. [FBrf0108275]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Dorus et al., 2006, Nat. Genet. 38(12): Supplementary Table 1. Genes encoding the Drosophila melanogaster sperm proteome. [FBrf0206129]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Sardiello et al., 2003.6.11, MitoDrome: A database of Drosophila melanogaster nuclear genes encoding proteins targeted to the mitochondrion. MitoDrome: A database of Drosophila melanogaster nuclear genes encoding proteins targeted to the mitochondrion. [FBrf0159903] Seshaiah and Andrew, 1999.7.29, aminoacyl-tRNA synthetases. aminoacyl-tRNA synthetases. [FBrf0110770]
FlyBase analysis	FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
DNA/RNA sequence record	Thornton, 2005.12.20, GenBank/EMBL/DDBJ: DQ334216 Drosophila miranda CG7479 gene, partial cds. [FBrf0197824]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]
Curated genome annotation	Zhu, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126704]