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Gene Dmel\l(1)G0004

General Information
Symbol	Dmel\l(1)G0004	Species	D. melanogaster
Name	lethal (1) G0004	Annotation symbol	CG11738
Feature type	protein_coding_gene	FlyBase ID	FBgn0027334
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	19C5-19C6	Sequence location	X:20,262,474..20,263,428 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene lethal (1) G0004 is referred to in FlyBase by the symbol Dmel\l(1)G0004 (CG11738, FBgn0027334). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: mRNA binding. There is experimental evidence that it is involved in the biological process: neurogenesis. 6 alleles are reported. The phenotypes of these alleles are annotated with: trichogen cell; mesothoracic tergum. It has one annotated transcript and one annotated polypeptide. Protein features are: K Homology domain; K Homology domain, type 1. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 and 18-24 hour embryonic stages, during early larval stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, adult crop, adult midgut, larval/adult hindgut, adult heart, adult fat body, larval salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1623306_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of l(1)G0004. Gene sequence location is X:20262474..20263428.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 19C5-19C6   Limits computationally determined from genome sequence between P{EP}amnEP1639&P{EP}amnEP367 and P{EP}CG1702EP1525
Experimentally Determined Cytological Location
Cytogenetic map Notes References 19C-19C   (determined by in situ hybridisation)   (Peter et al., 2002) 19C-19E     (Cordes, 1999.9.22) 19C-19C   (determined by in situ hybridisation)   (Schaefer et al., 1999.6.15)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\l(1)G0004 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) l(1)G0004-RA FBtr0077298  NM_134543   955   240
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein l(1)G0004-PA   FBpp0076990   26.7   240   10.62     NP_608387   AAF50915
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • K Homology domain, type 1 (IPR004088) K Homology domain (IPR004087)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA735642   AA803243   AE014298 AAF50915   AF188892 AAG17061   AJ427025   AW942605   AY061304 AAL28852   AY231920   BI164104   BI242411   BI352433   BI355074   GH740302   GH742397   GH743046   GH743225   GH744289   GH744953   GH761709   GH762541   GH763550   GH763709   GH763869   GH763966   GH764402   GH764547   GH765202   GH766615   GH768342   GH769356   GH769366
UniProtKB/Swiss-Prot	Q9VR89
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism | ubiquitous   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   anterior endoderm   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) dorsal pharyngeal muscle primordium   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) salivary gland body primordium   (Fisher et al., 2012) somatic muscle primordium   (Fisher et al., 2012) Comment:reported as muscle system primordium visceral muscle primordium   (Fisher et al., 2012) Comment:reported as muscle system primordium trunk mesoderm   (Fisher et al., 2012) embryonic stage 13 -- 16   dorsal pharyngeal muscle   (Fisher et al., 2012) embryonic hindgut   (Fisher et al., 2012) embryonic Malpighian tubule   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval muscle system   (Fisher et al., 2012) embryonic/larval somatic muscle   (Fisher et al., 2012) embryonic/larval visceral muscle   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, adult crop, adult midgut, larval/adult hindgut, adult heart, adult fat body, larval salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    161.725 Larval Midgut    68.5 Larval Hindgut    106.8 Larval Malpighian Tubules    85 Larval Fat Body    58.4 Larval Salivary Gland    135 Larval Trachea    168.2 Larval Carcass    130.8 Adult Head    109.2 Adult Eye    121.3 Adult Brain    74.7 Adult Thoracic-Abdominal Ganglion    78.5 Adult Crop    117.8 Adult Midgut    106.7 Adult Hindgut    106.8 Adult Malpighian Tubules    96.8 Adult Fat Body    144.2 Adult Salivary Gland    96.4 Adult Heart    111.175 Adult VirginFemale Spermatheca    120.1 Adult InseminatedFemale Spermatheca    151.1 Adult Ovary    216.2 Adult Testis    24.9 Adult Male Accessory Gland    240 Adult Carcass    127.3 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    161.725 Larval Midgut    68.5 Larval Hindgut    106.8 Larval Malpighian Tubules    85 Larval Fat Body    58.4 Larval Salivary Gland    135 Larval Trachea    168.2 Larval Carcass    130.8 Adult Head    109.2 Adult Eye    121.3 Adult Brain    74.7 Adult Thoracic-Abdominal Ganglion    78.5 Adult Crop    117.8 Adult Midgut    106.7 Adult Hindgut    106.8 Adult Malpighian Tubules    96.8 Adult Fat Body    144.2 Adult Salivary Gland    96.4 Adult Heart    111.175 Adult VirginFemale Spermatheca    120.1 Adult InseminatedFemale Spermatheca    151.1 Adult Ovary    216.2 Adult Testis    24.9 Adult Male Accessory Gland    240 Adult Carcass    127.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    161.725 Larval Midgut    68.5 Larval Hindgut    106.8 Larval Malpighian Tubules    85 Larval Fat Body    58.4 Larval Salivary Gland    135 Larval Trachea    168.2 Larval Carcass    130.8 Adult Head    109.2 Adult Eye    121.3 Adult Brain    74.7 Adult Thoracic-Abdominal Ganglion    78.5 Adult Crop    117.8 Adult Midgut    106.7 Adult Hindgut    106.8 Adult Malpighian Tubules    96.8 Adult Fat Body    144.2 Adult Salivary Gland    96.4 Adult Heart    111.175 Adult VirginFemale Spermatheca    120.1 Adult InseminatedFemale Spermatheca    151.1 Adult Ovary    216.2 Adult Testis    24.9 Adult Male Accessory Gland    240 Adult Carcass    127.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    161.725 Larval Midgut    68.5 Larval Hindgut    106.8 Larval Malpighian Tubules    85 Larval Fat Body    58.4 Larval Salivary Gland    135 Larval Trachea    168.2 Larval Carcass    130.8 Adult Head    109.2 Adult Eye    121.3 Adult Brain    74.7 Adult Thoracic-Abdominal Ganglion    78.5 Adult Crop    117.8 Adult Midgut    106.7 Adult Hindgut    106.8 Adult Malpighian Tubules    96.8 Adult Fat Body    144.2 Adult Salivary Gland    96.4 Adult Heart    111.175 Adult VirginFemale Spermatheca    120.1 Adult InseminatedFemale Spermatheca    151.1 Adult Ovary    216.2 Adult Testis    24.9 Adult Male Accessory Gland    240 Adult Carcass    127.3 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    161.725 Larval Midgut    68.5 Larval Hindgut    106.8 Larval Malpighian Tubules    85 Larval Fat Body    58.4 Larval Salivary Gland    135 Larval Trachea    168.2 Larval Carcass    130.8 Adult Head    109.2 Adult Eye    121.3 Adult Brain    74.7 Adult Thoracic-Abdominal Ganglion    78.5 Adult Crop    117.8 Adult Midgut    106.7 Adult Hindgut    106.8 Adult Malpighian Tubules    96.8 Adult Fat Body    144.2 Adult Salivary Gland    96.4 Adult Heart    111.175 Adult VirginFemale Spermatheca    120.1 Adult InseminatedFemale Spermatheca    151.1 Adult Ovary    216.2 Adult Testis    24.9 Adult Male Accessory Gland    240 Adult Carcass    127.3 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    161.725 Larval Midgut    68.5 Larval Hindgut    106.8 Larval Malpighian Tubules    85 Larval Fat Body    58.4 Larval Salivary Gland    135 Larval Trachea    168.2 Larval Carcass    130.8 Adult Head    109.2 Adult Eye    121.3 Adult Brain    74.7 Adult Thoracic-Abdominal Ganglion    78.5 Adult Crop    117.8 Adult Midgut    106.7 Adult Hindgut    106.8 Adult Malpighian Tubules    96.8 Adult Fat Body    144.2 Adult Salivary Gland    96.4 Adult Heart    111.175 Adult VirginFemale Spermatheca    120.1 Adult InseminatedFemale Spermatheca    151.1 Adult Ovary    216.2 Adult Testis    24.9 Adult Male Accessory Gland    240 Adult Carcass    127.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    161.725 Larval Midgut    68.5 Larval Hindgut    106.8 Larval Malpighian Tubules    85 Larval Fat Body    58.4 Larval Salivary Gland    135 Larval Trachea    168.2 Larval Carcass    130.8 Adult Head    109.2 Adult Eye    121.3 Adult Brain    74.7 Adult Thoracic-Abdominal Ganglion    78.5 Adult Crop    117.8 Adult Midgut    106.7 Adult Hindgut    106.8 Adult Malpighian Tubules    96.8 Adult Fat Body    144.2 Adult Salivary Gland    96.4 Adult Heart    111.175 Adult VirginFemale Spermatheca    120.1 Adult InseminatedFemale Spermatheca    151.1 Adult Ovary    216.2 Adult Testis    24.9 Adult Male Accessory Gland    240 Adult Carcass    127.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    161.725 Larval Midgut    68.5 Larval Hindgut    106.8 Larval Malpighian Tubules    85 Larval Fat Body    58.4 Larval Salivary Gland    135 Larval Trachea    168.2 Larval Carcass    130.8 Adult Head    109.2 Adult Eye    121.3 Adult Brain    74.7 Adult Thoracic-Abdominal Ganglion    78.5 Adult Crop    117.8 Adult Midgut    106.7 Adult Hindgut    106.8 Adult Malpighian Tubules    96.8 Adult Fat Body    144.2 Adult Salivary Gland    96.4 Adult Heart    111.175 Adult VirginFemale Spermatheca    120.1 Adult InseminatedFemale Spermatheca    151.1 Adult Ovary    216.2 Adult Testis    24.9 Adult Male Accessory Gland    240 Adult Carcass    127.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    109.2   NA  Eye    121.3   NA  Brain    74.7   161.725  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    78.5   NA  Crop    117.8   68.5  Midgut    106.7   106.8  Hindgut    106.8   85  Malpighian Tubules    96.8   58.4  Fat Body    144.2   135  Salivary Gland    96.4   NA  Heart    111.175   168.2  Trachea    NA   NA  VirginFemale Spermatheca    120.1   NA  InseminatedFemale Spermatheca    151.1   NA  Ovary    216.2   NA  Testis    24.9   NA  Male Accessory Gland    240   130.8  Carcass    127.3 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    67 central nervous system, larvae L3    39 central nervous system, pupae P8    17 head, virgin 1-day female    20 head, virgin 4-day female    31 head, virgin 20-day female    28 head, mated 1-day female    30 head, mated 4-day female    45 head, mated 20-day female    28 head, mated 1-day male    20 head, mated 4-day male    29 head, mated 20-day male    32 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    21 digestive system, 1-day adult    26 digestive system, 4-day adult    47 digestive system, 20-day adult    37 fat body, larvae L3 wandering    13 fat body, white prepupae    11 fat body, pupae P8    17 carcass, larvae L3 wandering    35 carcass, 1-day adult    18 carcass, 4-day adult    45 carcass, 20-day adult    35 ovary, virgin 4-day female    52 ovary, mated 4-day female    74 testis, mated 4-day male    23 accessory gland, mated 4-day male    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (67) central nervous system, larvae L3  (39) central nervous system, pupae P8    17 head, virgin 1-day female    20 head, virgin 4-day female  (31) head, virgin 20-day female  (28) head, mated 1-day female  (30) head, mated 4-day female  (45) head, mated 20-day female  (28) head, mated 1-day male    20 head, mated 4-day male  (29) head, mated 20-day male  (32) salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    21 digestive system, 1-day adult  26 digestive system, 4-day adult  (47) digestive system, 20-day adult  (37) fat body, larvae L3 wandering    13 fat body, white prepupae    11 fat body, pupae P8    17 carcass, larvae L3 wandering  (35) carcass, 1-day adult    18 carcass, 4-day adult  (45) carcass, 20-day adult  (35) ovary, virgin 4-day female  (52) ovary, mated 4-day female  (74) testis, mated 4-day male    23 accessory gland, mated 4-day male  (31) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    67 central nervous system, larvae L3    39 central nervous system, pupae P8    17 head, virgin 1-day female    20 head, virgin 4-day female    31 head, virgin 20-day female    28 head, mated 1-day female    30 head, mated 4-day female    45 head, mated 20-day female    28 head, mated 1-day male    20 head, mated 4-day male    29 head, mated 20-day male    32 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    21 digestive system, 1-day adult    26 digestive system, 4-day adult    47 digestive system, 20-day adult    37 fat body, larvae L3 wandering    13 fat body, white prepupae    11 fat body, pupae P8    17 carcass, larvae L3 wandering    35 carcass, 1-day adult    18 carcass, 4-day adult    45 carcass, 20-day adult    35 ovary, virgin 4-day female    52 ovary, mated 4-day female    74 testis, mated 4-day male    23 accessory gland, mated 4-day male    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    67 central nervous system, larvae L3    39 central nervous system, pupae P8    17 head, virgin 1-day female    20 head, virgin 4-day female    31 head, virgin 20-day female    28 head, mated 1-day female    30 head, mated 4-day female    45 head, mated 20-day female    28 head, mated 1-day male    20 head, mated 4-day male    29 head, mated 20-day male    32 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    21 digestive system, 1-day adult    26 digestive system, 4-day adult    47 digestive system, 20-day adult    37 fat body, larvae L3 wandering    13 fat body, white prepupae    11 fat body, pupae P8    17 carcass, larvae L3 wandering    35 carcass, 1-day adult    18 carcass, 4-day adult    45 carcass, 20-day adult    35 ovary, virgin 4-day female    52 ovary, mated 4-day female    74 testis, mated 4-day male    23 accessory gland, mated 4-day male    31 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    67 central nervous system, larvae L3    39 central nervous system, pupae P8    17 head, virgin 1-day female    20 head, virgin 4-day female    31 head, virgin 20-day female    28 head, mated 1-day female    30 head, mated 4-day female    45 head, mated 20-day female    28 head, mated 1-day male    20 head, mated 4-day male    29 head, mated 20-day male    32 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    21 digestive system, 1-day adult    26 digestive system, 4-day adult    47 digestive system, 20-day adult    37 fat body, larvae L3 wandering    13 fat body, white prepupae    11 fat body, pupae P8    17 carcass, larvae L3 wandering    35 carcass, 1-day adult    18 carcass, 4-day adult    45 carcass, 20-day adult    35 ovary, virgin 4-day female    52 ovary, mated 4-day female    74 testis, mated 4-day male    23 accessory gland, mated 4-day male    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (67) central nervous system, larvae L3  (39) central nervous system, pupae P8    17 head, virgin 1-day female    20 head, virgin 4-day female  31 head, virgin 20-day female  28 head, mated 1-day female  30 head, mated 4-day female  (45) head, mated 20-day female  28 head, mated 1-day male    20 head, mated 4-day male  29 head, mated 20-day male  32 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    21 digestive system, 1-day adult  26 digestive system, 4-day adult  (47) digestive system, 20-day adult  (37) fat body, larvae L3 wandering    13 fat body, white prepupae    11 fat body, pupae P8    17 carcass, larvae L3 wandering  (35) carcass, 1-day adult    18 carcass, 4-day adult  (45) carcass, 20-day adult  (35) ovary, virgin 4-day female  (52) ovary, mated 4-day female  (74) testis, mated 4-day male    23 accessory gland, mated 4-day male  31 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    67 central nervous system, larvae L3    39 central nervous system, pupae P8    17 head, virgin 1-day female    20 head, virgin 4-day female    31 head, virgin 20-day female    28 head, mated 1-day female    30 head, mated 4-day female    45 head, mated 20-day female    28 head, mated 1-day male    20 head, mated 4-day male    29 head, mated 20-day male    32 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    21 digestive system, 1-day adult    26 digestive system, 4-day adult    47 digestive system, 20-day adult    37 fat body, larvae L3 wandering    13 fat body, white prepupae    11 fat body, pupae P8    17 carcass, larvae L3 wandering    35 carcass, 1-day adult    18 carcass, 4-day adult    45 carcass, 20-day adult    35 ovary, virgin 4-day female    52 ovary, mated 4-day female    74 testis, mated 4-day male    23 accessory gland, mated 4-day male    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    67 central nervous system, larvae L3    39 central nervous system, pupae P8    17 head, virgin 1-day female    20 head, virgin 4-day female    31 head, virgin 20-day female    28 head, mated 1-day female    30 head, mated 4-day female    45 head, mated 20-day female    28 head, mated 1-day male    20 head, mated 4-day male    29 head, mated 20-day male    32 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    21 digestive system, 1-day adult    26 digestive system, 4-day adult    47 digestive system, 20-day adult    37 fat body, larvae L3 wandering    13 fat body, white prepupae    11 fat body, pupae P8    17 carcass, larvae L3 wandering    35 carcass, 1-day adult    18 carcass, 4-day adult    45 carcass, 20-day adult    35 ovary, virgin 4-day female    52 ovary, mated 4-day female    74 testis, mated 4-day male    23 accessory gland, mated 4-day male    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 and 18-24 hour embryonic stages, during early larval stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    67 embryo 02-04hr    61 embryo 04-06hr    57 embryo 06-08hr    75 embryo 08-10hr    69 embryo 10-12hr    68 embryo 12-14hr    35 embryo 14-16hr    43 embryo 16-18hr    26 embryo 18-20hr    30 embryo 20-22hr    61 embryo 22-24hr    40 larva L1    95 larva L2    47 larva L3 12hr old    34 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    18 pupae 2d postWPP    18 pupae 3d postWPP    11 pupae 4d postWPP    17 adult male 01day    16 adult male 05day    19 adult male 30day    20 adult female 01day    50 adult female 05day    50 adult female 30day    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (67) embryo 02-04hr  (61) embryo 04-06hr  (57) embryo 06-08hr  (75) embryo 08-10hr  (69) embryo 10-12hr  (68) embryo 12-14hr  (35) embryo 14-16hr  (43) embryo 16-18hr  26 embryo 18-20hr  (30) embryo 20-22hr  (61) embryo 22-24hr  (40) larva L1  (95) larva L2  (47) larva L3 12hr old  (34) larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    18 pupae 2d postWPP    18 pupae 3d postWPP    11 pupae 4d postWPP    17 adult male 01day    16 adult male 05day    19 adult male 30day    20 adult female 01day  (50) adult female 05day  (50) adult female 30day  (57) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    67 embryo 02-04hr    61 embryo 04-06hr    57 embryo 06-08hr    75 embryo 08-10hr    69 embryo 10-12hr    68 embryo 12-14hr    35 embryo 14-16hr    43 embryo 16-18hr    26 embryo 18-20hr    30 embryo 20-22hr    61 embryo 22-24hr    40 larva L1    95 larva L2    47 larva L3 12hr old    34 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    18 pupae 2d postWPP    18 pupae 3d postWPP    11 pupae 4d postWPP    17 adult male 01day    16 adult male 05day    19 adult male 30day    20 adult female 01day    50 adult female 05day    50 adult female 30day    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    67 embryo 02-04hr    61 embryo 04-06hr    57 embryo 06-08hr    75 embryo 08-10hr    69 embryo 10-12hr    68 embryo 12-14hr    35 embryo 14-16hr    43 embryo 16-18hr    26 embryo 18-20hr    30 embryo 20-22hr    61 embryo 22-24hr    40 larva L1    95 larva L2    47 larva L3 12hr old    34 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    18 pupae 2d postWPP    18 pupae 3d postWPP    11 pupae 4d postWPP    17 adult male 01day    16 adult male 05day    19 adult male 30day    20 adult female 01day    50 adult female 05day    50 adult female 30day    57 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    67 embryo 02-04hr    61 embryo 04-06hr    57 embryo 06-08hr    75 embryo 08-10hr    69 embryo 10-12hr    68 embryo 12-14hr    35 embryo 14-16hr    43 embryo 16-18hr    26 embryo 18-20hr    30 embryo 20-22hr    61 embryo 22-24hr    40 larva L1    95 larva L2    47 larva L3 12hr old    34 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    18 pupae 2d postWPP    18 pupae 3d postWPP    11 pupae 4d postWPP    17 adult male 01day    16 adult male 05day    19 adult male 30day    20 adult female 01day    50 adult female 05day    50 adult female 30day    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (67) embryo 02-04hr  (61) embryo 04-06hr  (57) embryo 06-08hr  (75) embryo 08-10hr  (69) embryo 10-12hr  (68) embryo 12-14hr  (35) embryo 14-16hr  (43) embryo 16-18hr  26 embryo 18-20hr  30 embryo 20-22hr  (61) embryo 22-24hr  (40) larva L1  (95) larva L2  (47) larva L3 12hr old  (34) larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    18 pupae 2d postWPP    18 pupae 3d postWPP    11 pupae 4d postWPP    17 adult male 01day    16 adult male 05day    19 adult male 30day    20 adult female 01day  (50) adult female 05day  (50) adult female 30day  (57) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    67 embryo 02-04hr    61 embryo 04-06hr    57 embryo 06-08hr    75 embryo 08-10hr    69 embryo 10-12hr    68 embryo 12-14hr    35 embryo 14-16hr    43 embryo 16-18hr    26 embryo 18-20hr    30 embryo 20-22hr    61 embryo 22-24hr    40 larva L1    95 larva L2    47 larva L3 12hr old    34 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    18 pupae 2d postWPP    18 pupae 3d postWPP    11 pupae 4d postWPP    17 adult male 01day    16 adult male 05day    19 adult male 30day    20 adult female 01day    50 adult female 05day    50 adult female 30day    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    67 embryo 02-04hr    61 embryo 04-06hr    57 embryo 06-08hr    75 embryo 08-10hr    69 embryo 10-12hr    68 embryo 12-14hr    35 embryo 14-16hr    43 embryo 16-18hr    26 embryo 18-20hr    30 embryo 20-22hr    61 embryo 22-24hr    40 larva L1    95 larva L2    47 larva L3 12hr old    34 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    16 white prepupae 12hr    17 white prepupae 24hr    18 pupae 2d postWPP    18 pupae 3d postWPP    11 pupae 4d postWPP    17 adult male 01day    16 adult male 05day    19 adult male 30day    20 adult female 01day    50 adult female 05day    50 adult female 30day    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    96 Schneider line 2 Sg4    119 embryonic 1182-4H    60 embryonic GM2    26 embryonic Kc167    51 embryonic S1    68 embryonic S3    59 leg disc CME L1    119 wing disc CME-W2    53 wing disc ML-DmD8    46 wing disc ML-DmD9    68 wing disc ML-DmD16-c3    109 wing disc ML-DmD21    147 wing disc ML-DmD32    113 haltere disc ML-DmD17-c3    33 eye-antennal disc ML-DmD11    76 antennal disc ML-DmD20-c5    57 mixed discs ML-DmD4-c1    73 CNS ML-DmBG1-c1    120 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    60 ovary fGS/OSS    70 ovary OSC    36 ovary OSS    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (96) Schneider line 2 Sg4  (119) embryonic 1182-4H  (60) embryonic GM2  26 embryonic Kc167  (51) embryonic S1  (68) embryonic S3  (59) leg disc CME L1  (119) wing disc CME-W2  (53) wing disc ML-DmD8  (46) wing disc ML-DmD9  (68) wing disc ML-DmD16-c3  (109) wing disc ML-DmD21  (147) wing disc ML-DmD32  (113) haltere disc ML-DmD17-c3  (33) eye-antennal disc ML-DmD11  (76) antennal disc ML-DmD20-c5  (57) mixed discs ML-DmD4-c1  (73) CNS ML-DmBG1-c1  (120) CNS ML-DmBG2-c2  (38) tumorous blood cells mbn2  (60) ovary fGS/OSS  (70) ovary OSC  (36) ovary OSS  (57) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    96 Schneider line 2 Sg4  (119) embryonic 1182-4H    60 embryonic GM2    26 embryonic Kc167    51 embryonic S1    68 embryonic S3    59 leg disc CME L1  (119) wing disc CME-W2    53 wing disc ML-DmD8    46 wing disc ML-DmD9    68 wing disc ML-DmD16-c3  (109) wing disc ML-DmD21  (147) wing disc ML-DmD32  (113) haltere disc ML-DmD17-c3    33 eye-antennal disc ML-DmD11    76 antennal disc ML-DmD20-c5    57 mixed discs ML-DmD4-c1    73 CNS ML-DmBG1-c1  (120) CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    60 ovary fGS/OSS    70 ovary OSC    36 ovary OSS    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    96 Schneider line 2 Sg4    119 embryonic 1182-4H    60 embryonic GM2    26 embryonic Kc167    51 embryonic S1    68 embryonic S3    59 leg disc CME L1    119 wing disc CME-W2    53 wing disc ML-DmD8    46 wing disc ML-DmD9    68 wing disc ML-DmD16-c3    109 wing disc ML-DmD21    147 wing disc ML-DmD32    113 haltere disc ML-DmD17-c3    33 eye-antennal disc ML-DmD11    76 antennal disc ML-DmD20-c5    57 mixed discs ML-DmD4-c1    73 CNS ML-DmBG1-c1    120 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    60 ovary fGS/OSS    70 ovary OSC    36 ovary OSS    57 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    96 Schneider line 2 Sg4    119 embryonic 1182-4H    60 embryonic GM2    26 embryonic Kc167    51 embryonic S1    68 embryonic S3    59 leg disc CME L1    119 wing disc CME-W2    53 wing disc ML-DmD8    46 wing disc ML-DmD9    68 wing disc ML-DmD16-c3    109 wing disc ML-DmD21    147 wing disc ML-DmD32    113 haltere disc ML-DmD17-c3    33 eye-antennal disc ML-DmD11    76 antennal disc ML-DmD20-c5    57 mixed discs ML-DmD4-c1    73 CNS ML-DmBG1-c1    120 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    60 ovary fGS/OSS    70 ovary OSC    36 ovary OSS    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (96) Schneider line 2 Sg4  (119) embryonic 1182-4H  (60) embryonic GM2  26 embryonic Kc167  (51) embryonic S1  (68) embryonic S3  (59) leg disc CME L1  (119) wing disc CME-W2  (53) wing disc ML-DmD8  (46) wing disc ML-DmD9  (68) wing disc ML-DmD16-c3  (109) wing disc ML-DmD21  (147) wing disc ML-DmD32  (113) haltere disc ML-DmD17-c3  (33) eye-antennal disc ML-DmD11  (76) antennal disc ML-DmD20-c5  (57) mixed discs ML-DmD4-c1  (73) CNS ML-DmBG1-c1  (120) CNS ML-DmBG2-c2  (38) tumorous blood cells mbn2  (60) ovary fGS/OSS  (70) ovary OSC  (36) ovary OSS  (57) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    96 Schneider line 2 Sg4  119 embryonic 1182-4H    60 embryonic GM2    26 embryonic Kc167    51 embryonic S1    68 embryonic S3    59 leg disc CME L1  119 wing disc CME-W2    53 wing disc ML-DmD8    46 wing disc ML-DmD9    68 wing disc ML-DmD16-c3  109 wing disc ML-DmD21  (147) wing disc ML-DmD32  113 haltere disc ML-DmD17-c3    33 eye-antennal disc ML-DmD11    76 antennal disc ML-DmD20-c5    57 mixed discs ML-DmD4-c1    73 CNS ML-DmBG1-c1  120 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    60 ovary fGS/OSS    70 ovary OSC    36 ovary OSS    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    96 Schneider line 2 Sg4    119 embryonic 1182-4H    60 embryonic GM2    26 embryonic Kc167    51 embryonic S1    68 embryonic S3    59 leg disc CME L1    119 wing disc CME-W2    53 wing disc ML-DmD8    46 wing disc ML-DmD9    68 wing disc ML-DmD16-c3    109 wing disc ML-DmD21    147 wing disc ML-DmD32    113 haltere disc ML-DmD17-c3    33 eye-antennal disc ML-DmD11    76 antennal disc ML-DmD20-c5    57 mixed discs ML-DmD4-c1    73 CNS ML-DmBG1-c1    120 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    60 ovary fGS/OSS    70 ovary OSC    36 ovary OSS    57 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    71 cold shock, 4-day adult    70 heat shock, 4-day adult    59 Cadmium 50 mM 6 hrs, larvae L3    26 Cadmium 50 mM 12 hrs, larvae L3    23 Cadmium 50 mM 48 hrs, 4-day adult    46 Cadmium 100 mM 48 hrs, 4-day adult    53 Copper 0.5 mM 12 hrs, larvae L3    167 Copper 15 mM 48 hrs, 4-day adult    26 Zinc 5 mM 12 hrs, larvae L3    55 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    63 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    34 Caffeine 1.5 mg/ml 4 hrs, larvae L3    12 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    61 Caffeine 25 mg/ml 48 hrs, 4-day adult    70 Paraquat 5 mM 48 hrs, 4-day adult    62 Paraquat 10 mM 48 hrs, 4-day adult    84 Rotenone 2 μg 12 hrs, larvae L3    35 Rotenone 8 μg 12 hrs, larvae L3    56 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (71) cold shock, 4-day adult  (70) heat shock, 4-day adult  (59) Cadmium 50 mM 6 hrs, larvae L3  26 Cadmium 50 mM 12 hrs, larvae L3    23 Cadmium 50 mM 48 hrs, 4-day adult  (46) Cadmium 100 mM 48 hrs, 4-day adult  (53) Copper 0.5 mM 12 hrs, larvae L3  (167) Copper 15 mM 48 hrs, 4-day adult  26 Zinc 5 mM 12 hrs, larvae L3  (55) Zinc 4.5 mM 48 hrs, 4-day adult  (35) Ethanol 2.5% 3 hrs, larvae L3  (63) Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3  (34) Caffeine 1.5 mg/ml 4 hrs, larvae L3    12 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (61) Caffeine 25 mg/ml 48 hrs, 4-day adult  (70) Paraquat 5 mM 48 hrs, 4-day adult  (62) Paraquat 10 mM 48 hrs, 4-day adult  (84) Rotenone 2 μg 12 hrs, larvae L3  (35) Rotenone 8 μg 12 hrs, larvae L3  (56) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    71 cold shock, 4-day adult    70 heat shock, 4-day adult    59 Cadmium 50 mM 6 hrs, larvae L3    26 Cadmium 50 mM 12 hrs, larvae L3    23 Cadmium 50 mM 48 hrs, 4-day adult    46 Cadmium 100 mM 48 hrs, 4-day adult    53 Copper 0.5 mM 12 hrs, larvae L3  (167) Copper 15 mM 48 hrs, 4-day adult    26 Zinc 5 mM 12 hrs, larvae L3    55 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    63 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    34 Caffeine 1.5 mg/ml 4 hrs, larvae L3    12 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    61 Caffeine 25 mg/ml 48 hrs, 4-day adult    70 Paraquat 5 mM 48 hrs, 4-day adult    62 Paraquat 10 mM 48 hrs, 4-day adult    84 Rotenone 2 μg 12 hrs, larvae L3    35 Rotenone 8 μg 12 hrs, larvae L3    56 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    71 cold shock, 4-day adult    70 heat shock, 4-day adult    59 Cadmium 50 mM 6 hrs, larvae L3    26 Cadmium 50 mM 12 hrs, larvae L3    23 Cadmium 50 mM 48 hrs, 4-day adult    46 Cadmium 100 mM 48 hrs, 4-day adult    53 Copper 0.5 mM 12 hrs, larvae L3    167 Copper 15 mM 48 hrs, 4-day adult    26 Zinc 5 mM 12 hrs, larvae L3    55 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    63 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    34 Caffeine 1.5 mg/ml 4 hrs, larvae L3    12 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    61 Caffeine 25 mg/ml 48 hrs, 4-day adult    70 Paraquat 5 mM 48 hrs, 4-day adult    62 Paraquat 10 mM 48 hrs, 4-day adult    84 Rotenone 2 μg 12 hrs, larvae L3    35 Rotenone 8 μg 12 hrs, larvae L3    56 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    71 cold shock, 4-day adult    70 heat shock, 4-day adult    59 Cadmium 50 mM 6 hrs, larvae L3    26 Cadmium 50 mM 12 hrs, larvae L3    23 Cadmium 50 mM 48 hrs, 4-day adult    46 Cadmium 100 mM 48 hrs, 4-day adult    53 Copper 0.5 mM 12 hrs, larvae L3    167 Copper 15 mM 48 hrs, 4-day adult    26 Zinc 5 mM 12 hrs, larvae L3    55 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    63 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    34 Caffeine 1.5 mg/ml 4 hrs, larvae L3    12 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    61 Caffeine 25 mg/ml 48 hrs, 4-day adult    70 Paraquat 5 mM 48 hrs, 4-day adult    62 Paraquat 10 mM 48 hrs, 4-day adult    84 Rotenone 2 μg 12 hrs, larvae L3    35 Rotenone 8 μg 12 hrs, larvae L3    56 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (71) cold shock, 4-day adult  (70) heat shock, 4-day adult  (59) Cadmium 50 mM 6 hrs, larvae L3  26 Cadmium 50 mM 12 hrs, larvae L3    23 Cadmium 50 mM 48 hrs, 4-day adult  (46) Cadmium 100 mM 48 hrs, 4-day adult  (53) Copper 0.5 mM 12 hrs, larvae L3  (167) Copper 15 mM 48 hrs, 4-day adult  26 Zinc 5 mM 12 hrs, larvae L3  (55) Zinc 4.5 mM 48 hrs, 4-day adult  (35) Ethanol 2.5% 3 hrs, larvae L3  (63) Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3  (34) Caffeine 1.5 mg/ml 4 hrs, larvae L3    12 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (61) Caffeine 25 mg/ml 48 hrs, 4-day adult  (70) Paraquat 5 mM 48 hrs, 4-day adult  (62) Paraquat 10 mM 48 hrs, 4-day adult  (84) Rotenone 2 μg 12 hrs, larvae L3  (35) Rotenone 8 μg 12 hrs, larvae L3  (56) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    71 cold shock, 4-day adult    70 heat shock, 4-day adult    59 Cadmium 50 mM 6 hrs, larvae L3    26 Cadmium 50 mM 12 hrs, larvae L3    23 Cadmium 50 mM 48 hrs, 4-day adult    46 Cadmium 100 mM 48 hrs, 4-day adult    53 Copper 0.5 mM 12 hrs, larvae L3  (167) Copper 15 mM 48 hrs, 4-day adult    26 Zinc 5 mM 12 hrs, larvae L3    55 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    63 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    34 Caffeine 1.5 mg/ml 4 hrs, larvae L3    12 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    61 Caffeine 25 mg/ml 48 hrs, 4-day adult    70 Paraquat 5 mM 48 hrs, 4-day adult    62 Paraquat 10 mM 48 hrs, 4-day adult    84 Rotenone 2 μg 12 hrs, larvae L3    35 Rotenone 8 μg 12 hrs, larvae L3    56 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    71 cold shock, 4-day adult    70 heat shock, 4-day adult    59 Cadmium 50 mM 6 hrs, larvae L3    26 Cadmium 50 mM 12 hrs, larvae L3    23 Cadmium 50 mM 48 hrs, 4-day adult    46 Cadmium 100 mM 48 hrs, 4-day adult    53 Copper 0.5 mM 12 hrs, larvae L3    167 Copper 15 mM 48 hrs, 4-day adult    26 Zinc 5 mM 12 hrs, larvae L3    55 Zinc 4.5 mM 48 hrs, 4-day adult    35 Ethanol 2.5% 3 hrs, larvae L3    63 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    34 Caffeine 1.5 mg/ml 4 hrs, larvae L3    12 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    61 Caffeine 25 mg/ml 48 hrs, 4-day adult    70 Paraquat 5 mM 48 hrs, 4-day adult    62 Paraquat 10 mM 48 hrs, 4-day adult    84 Rotenone 2 μg 12 hrs, larvae L3    35 Rotenone 8 μg 12 hrs, larvae L3    56 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_08 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • LD21667 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027334 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG11738-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for l(1)G0004 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal l(1)G0004GD7374 lethal | larval stage l(1)G0004G0004 l(1)G0004G0005 lethal | recessive l(1)G0004G0004 partially lethal - majority die | pupal stage, with Scer\GAL4pnr-MD237 l(1)G0004GD7374 Other Phenotypes Allele neuroanatomy defective | larval stage l(1)G0004GD7374 visible, with Scer\GAL4pnr-MD237 l(1)G0004GD7374 Phenotype manifest in Allele ganglion mother cell | larval stage l(1)G0004GD7374 mesothoracic tergum, with Scer\GAL4pnr-MD237 l(1)G0004GD7374 trichogen cell, with Scer\GAL4pnr-MD237 l(1)G0004GD7374
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of l(1)G0004 Class Mutagen Stocks Known lesion l(1)G0004G0004 P-element activity 1 -- l(1)G0004G0005 P-element activity 0 -- l(1)G0004GG01561 0 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of l(1)G0004 Class Mutagen Stocks Known lesion l(1)G0004GD7374 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes l(1)G0004KK108981 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes l(1)G0004NIG.11738R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(1)Exel6254 (Ryder, 2004.4.26)
Duplicated in	Dp(1;3)DC409 (Popodi, 2010.10.8)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD7374} NA P{KK108981} NA P{NIG.11738R} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap P{lacW}l(1)G0004G0004 No P{lacW}l(1)G0004G0005 No insertion of mobile activating element P{Mae-UAS.6.11}l(1)G0004GG01561 NA
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
mRNA binding inferred from sequence or structural similarity (Cordes, 1999.9.22) RNA binding inferred from electronic annotation with InterPro:IPR004087, InterPro:IPR018111 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
nucleolus inferred from sequence or structural similarity with UniProtKB:Q9NRX1 (assigned by UniProtKB) (UniProtKB Project Members, 2007.1.9)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
l(1)G0004 - CG14715 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) l(1)G0004 - CG1532 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) l(1)G0004 - Crc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) l(1)G0004 - Cyp6a22 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) l(1)G0004 - Df31 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) l(1)G0004 - Eno anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) l(1)G0004 - FK506-bp2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) l(1)G0004 - Mdh2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) l(1)G0004 - Pdi anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) l(1)G0004 - Prosα4 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) l(1)G0004 - Trap1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) l(1)G0004 - awd anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) l(1)G0004 - regucalcin anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) l(1)G0004 - smt3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions l(1)G0004 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 59324 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0027334 DroID - A comprehensive database of gene and protein interactions. • FBgn0027334 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33033
Orthologs
OrthoDB Orthologs (39) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6BCF7C Dipteran inclusive ortholog search EOG6VT66C Insect inclusive ortholog search EOG60VTKT Arthropod inclusive ortholog search EOG63J9MX Metazoa inclusive ortholog search EOG6DRP6X
Orthologs in Drosophila Species (EOG6BCF7C)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\l(1)G0004     Drosophila simulans   Dsim\GD17488 Y   Drosophila sechellia   Dsec\GM23025 Y   Drosophila erecta   Dere\GG19285 Y   Drosophila yakuba   Dyak\GE17874 Y   Drosophila ananassae   Dana\GF20246 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA11169 Y   Drosophila willistoni   Dwil\GK20148 Y   Drosophila virilis   Dvir\GJ15820 Y   Drosophila mojavensis   Dmoj\GI11042 Y   Drosophila grimshawi   Dgri\GH12628 Y
Orthologs in non-Drosophila Dipterans (EOG6VT66C)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL011832   Anopheles gambiae Malaria mosquito  Agam\AGAP004145   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ019677   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ015853
Orthologs in non-Dipteran Insects (EOG60VTKT)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB51205   Apis mellifera Western honey bee  Amel\GB51208   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG007324   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH21603   Atta cephalotes Leafcutter ant  Acep\ACEP24410   Camponotus floridanus Florida carpenter ant  Cflo\CFLO15042   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL13598   Linepithema humile Argentine ant  Lhum\LH15501   Pogonomyrmex barbatus Red harvester ant  Pbar\PB25522   Acyrthosiphon pisum Pea aphid  Apim\ACYPI001806   Bombyx mori Silkmoth  Bmor\BGIBMGA014064   Pediculus humanus Human body louse  Phum\PHUM356890   Tribolium castaneum Red flour beetle  Tcas\TC009539
Orthologs in non-Insect Arthropods (EOG63J9MX)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\LARP4   Ixodes scapularis Deer tick  Isca\ISCW023560
Orthologs in non-Arthropod Metazoa (EOG6DRP6X)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\pno-1   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_013905gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_008049gn   Danio rerio Zebrafish  Drer\pno1   Xenopus tropicalis Western clawed frog  Xtro\pno1   Gallus gallus Domestic chicken  Ggal\PNO1   Mus musculus House mouse  Mmus\Pno1   Rattus norvegicus Norway rat  Rnor\Pno1   Homo sapiens Human  Hsap\PNO1
Human Orthologs (1)
Gene OMIM HGNC Hsap\PNO1
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD17488 Drosophila sechellia Dsec\GM23025 Drosophila erecta Dere\GG19285 Drosophila yakuba Dyak\GE17874 Drosophila ananassae Dana\GF20246 Drosophila pseudoobscura pseudoobscura Dpse\GA11169 Drosophila willistoni Dwil\GK20148 Drosophila virilis Dvir\GJ15820 Drosophila mojavensis Dmoj\GI11042 Drosophila grimshawi Dgri\GH12628
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	10070 w67c23 P{lacW}l(1)G0004G0004/FM7c
VDRC	v106318 P{KK108981}VIE-260B v16289 w1118; P{GD7374}v16289 v17244 w1118; P{GD7374}v17244
Genomic Clones ( 1 )
	BACR30J04 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 27 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD21667
Other clones	DPiM_LD21667 yak-em_CG11738
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GM10451 GM19250 GM29382 RE03677 RE39734
Other clones	RP001003833 RP001004417 RP001006524 RP001010974 RP001013447 RP001018439 RP001019234 RP001020380 RP001025419 RP001026344 RP001027003 RP001029792 RP001040486 RP001043018 RP001048400 RP001049750 RP001051269 RP001053024 RP001053150
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0027334 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33033
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: l(1)G0004 CG11738 (Peter et al., 2002)
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_134543 RefSeq (Proteins) • NP_608387 DDBJ / EMBL / GenBank • AA735642 AAF50915 AAG17061 AAL28852 AF188892 AJ427025 AW942605 AY061304 Entrez Gene - A searchable database of RefSeq genes. • 33033 UniProtKB/Swiss-Prot • Q9VR89
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • K Homology domain, type 1 (IPR004088) K Homology domain (IPR004087) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD21667
Linkouts
	BioGRID - A database of protein and genetic interactions • 59324 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0027334 DroID - A comprehensive database of gene and protein interactions. • FBgn0027334 DRSC - Results from RNAi screens. • FBgn0027334 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027334 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG11738-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0027334 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33033 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33033 modMine - Data generated by the modENCODE project. • FBgn0027334
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	CG11738 (Orian et al., 2003, Ida et al., 2009, Keleman et al., 2009.8.5) l(1)G0004 (UniProtKB Project Members, 2007.1.9, Ida et al., 2009, Weake and Scott, 2007, Popodi, 2010.10.8, Japanese National Institute of Genetics, 2012.5.21) unnamed (Cordes, 1999.9.22)
Name Synonym	lethal (1) G0004
Secondary FlyBase IDs
	FBgn0031105
References ( 26 )
Generate a list of	All references relating to this gene ( 26 )
List References by type	Research paper  ( 3 ) Supplementary material  ( 7 ) Personal communication to FlyBase  ( 9 ) FlyBase analysis  ( 2 ) DNA/RNA sequence record  ( 1 ) Protein sequence record  ( 1 ) Stock list  ( 1 ) Website  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...