FlyBase Gene Report: Dmel\jim

General Information

Symbol

Dmel\jim

Species

D. melanogaster

Name

jim

Annotation Symbol

CG11352

Feature Type

protein_coding_gene

FlyBase ID

FBgn0027339

Gene Model Status

Current

Stock Availability

20 publicly available

Gene Snapshot

jim (jim) encodes a zinc finger C2H2 transcription factor involved in dendrite morphogenesis and regulation of chromatin silencing. [Date last reviewed: 2019-07-11]

Other Summaries

Alliance
Auto summary
Gene Group
Interactive Fly

Also Known As

ovfc.K, ovk

Key Links

Genomic Location

Cytogenetic map

80A2-80A4

Sequence location

3L:22,789,233..22,835,194 [-]

Recombination map

3-47

RefSeq locus

NT_037436 REGION:22789233..22835194

Sequence

Get Decorated FASTA

Genomic Maps

GBrowse JBrowse

Help me choose

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

GO Summary Ribbons

[Detailed GO annotations]

Gene Group (FlyBase)

C2H2 ZINC FINGER TRANSCRIPTION FACTORS

Protein Family (UniProt)

Protein Signatures (InterPro)

Molecular Function (GO)
[Detailed GO annotations]

Experimental Evidence

Predictions / Assertions

nucleic acid binding

Summaries

Gene Group (FlyBase)

C2H2 ZINC FINGER TRANSCRIPTION FACTORS -: Zinc finger C2H2 transcription factors are sequence-specific DNA binding proteins that regulate transcription. They possess DNA-binding domains that are formed from repeated Cys₂His₂ zinc finger motifs. (Adapted from PMID:1835093, FBrf0220103 and FBrf0155739).

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the GBrowse view of Dmel\jim or the JBrowse view of Dmel\jim for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Comments on Gene Model

Gene model reviewed during 5.44

Stop-codon suppression (UGA) postulated; FBrf0216884.

gene_with_stop_codon_read_through ; SO:0000697

Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.

Gene model reviewed during 5.46

Tissue-specific extension of 3' UTRs observed during later stages (FBrf0218523, FBrf0219848); all variants may not be annotated

Sequence Ontology: Class of Gene

gene_with_edited_transcript

(Rodriguez et al., 2012)

gene_with_stop_codon_read_through

(Jungreis et al., 2011)

nuclear_gene

protein_coding_gene

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

jim-RC

FBtr0078582

NM_143699

13458

820

jim-RD

FBtr0100184

NM_001014601

4749

820

jim-RE

FBtr0304985

NM_001259959

12379

825

jim-RF

FBtr0330076

NM_001275292

6714

938

jim-RG

FBtr0333211

NM_001275293

5542

794

jim-RH

FBtr0333212

NM_168964

5620

820

jim-RI

FBtr0333213

NM_001275294

6193

792

Additional Transcript Data and Comments

Reported size (kB)

6.5, 5.5 (northern blot)

(Doerflinger et al., 1999)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank

jim-PC

FBpp0078231

89.1

820

8.87

NP_651956

AAF51862

jim-PD

FBpp0099541

89.1

820

8.87

NP_001014601

AAX52769

jim-PE

FBpp0293522

89.7

825

8.87

NP_001246888

AFH04559

jim-PF

FBpp0303109

100.8

938

8.87

NP_001262221

AGB94914

jim-PG

FBpp0305413

86.1

794

8.76

NP_001262222

AGB94915

jim-PH

FBpp0305414

89.1

820

8.87

NP_730746

AAN12203

jim-PI

FBpp0305415

85.9

792

8.76

NP_001262223

AGB94916

Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

820 aa isoforms: jim-PC, jim-PD, jim-PH

Additional Polypeptide Data and Comments

Reported size (kDa)

820 (aa); 115 (kD observed)

(Doerflinger et al., 1999)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\jim using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Linkouts

Gene Ontology (3 terms)

Molecular Function (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

nucleic acid binding

inferred from electronic annotation with InterPro:IPR013087

(assigned by InterPro )

(FlyBase Curators et al., 2004-)

Biological Process (2 terms)

Terms Based on Experimental Evidence (2 terms)

CV Term

Evidence

References

dendrite morphogenesis

inferred from mutant phenotype

(Iyer et al., 2013)

regulation of chromatin silencing

inferred from mutant phenotype

(Schneiderman et al., 2010)

Terms Based on Predictions or Assertions (0 terms)

Cellular Component (0 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (0 terms)

Expression Data

Expression Summary Ribbons

Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.

For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.

Transcript Expression

No Assay Recorded

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage oogenesis stage S12 -- S14

oocyte associated follicle cell

(Doerflinger et al., 1999)

adult stage oogenesis stage S9 -- S14

nurse follicle cell

(Doerflinger et al., 1999)

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage oogenesis stage S10A -- S14

oocyte associated follicle cell

(Doerflinger et al., 1999)

embryonic stage 1 -- 3

organism

Comment: maternally deposited

(Fisher et al., 2012)

embryonic stage 4 -- 6

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 13 -- 16

dorsal pharyngeal muscle

(Fisher et al., 2012)

embryonic brain

(Fisher et al., 2012)

embryonic esophagus

(Fisher et al., 2012)

embryonic hindgut

(Fisher et al., 2012)

ventral nerve cord

(Fisher et al., 2012)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

immunolocalization

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 15

embryonic/larval hindgut

(Doerflinger et al., 1999)

embryonic/larval anterior midgut

(Doerflinger et al., 1999)

pharyngeal muscle

(Doerflinger et al., 1999)

adult stage oogenesis stage S9 -- S14

nurse follicle cell

(Doerflinger et al., 1999)

adult stage oogenesis stage S10 -- S14

oocyte associated follicle cell

(Doerflinger et al., 1999)

Additional Descriptive Data

jim protein is detected from stage 10 of oogenesis in the non-antero-dorsal columnar follicle cells. It is also detected in squamous cells from stage 9 onward and in a single row of 10-15 antero-dorsal columnar cells in stage 12 follicles. In stage 15 embryos, jim protein accumulates in the anterior midgut and hindgut and in glossopharyngeal muscles.

(Doerflinger et al., 1999)

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

Reporter: P{lacW}jim^OVK

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage oogenesis stage S10 -- S14

oocyte associated follicle cell

(Doerflinger et al., 1999)

High-Throughput Expression Data

Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\jim in GBrowse 2

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\jim

View exonic expression by tissue for Dmel\jim

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0027339

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0027339

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG11352-RB;CG11352-RC

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG11352

Flygut - An atlas of the Drosophila adult midgut

FBgn0027339

Images

FlyBase Wiki

Image Based Resources

Alleles, Insertions, and Transgenic Constructs

Classical and Insertion Alleles ( 38 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 8 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of jim

Transgenic constructs containing regulatory region of jim

Deletions and Duplications ( 0 )

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal, with Scer\GAL4^Act5C.PI

jim^LA3.1

lethal - all die before end of pupal stage, with Scer\GAL4^pnr-MD237

jim^GD4363

viable

Sterility

Allele

fertile

Other Phenotypes

Allele

neuroanatomy defective, with Scer\GAL4^ppk.1.9

some die during pupal stage, with Scer\GAL4^pnr-MD237

jim^GD4363

Phenotype manifest in

Allele

embryonic/larval hemocyte | third instar larval stage, with Scer\GAL4^Pxn.PS

jim^EY14392

larval dorsal multidendritic neuron ddaC, with Scer\GAL4^ppk.1.9

Orthologs

Downloads

Download All DIOPT Orthologs

Download All OrthoDB Orthologs

Human Orthologs (via DIOPT v7.1)

Homo sapiens (Human) (65)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Hsap\ZNF133

2 of 15

Yes

Hsap\ZNF343

2 of 15

Yes

Hsap\ZNF460

2 of 15

Yes

Hsap\ZNF708

2 of 15

Yes

Hsap\GZF1

1 of 15

Yes

Hsap\HKR1

1 of 15

Yes

Hsap\MZF1

1 of 15

Hsap\ZBTB11

1 of 15

Yes

Hsap\ZNF7

1 of 15

Yes

Hsap\ZNF84

1 of 15

Hsap\ZNF85

1 of 15

Hsap\ZNF90

1 of 15

Yes

Hsap\ZNF92

1 of 15

Yes

Hsap\ZNF98

1 of 15

Hsap\ZNF99

1 of 15

Hsap\ZNF100

1 of 15

Yes

Hsap\ZNF114

1 of 15

Yes

Hsap\ZNF117

1 of 15

Yes

Hsap\ZNF138

1 of 15

Yes

Hsap\ZNF141

1 of 15

Yes

Hsap\ZNF195

1 of 15

Hsap\ZNF234

1 of 15

Hsap\ZNF253

1 of 15

Yes

Hsap\ZNF257

1 of 15

Yes

Hsap\ZNF273

1 of 15

Yes

Hsap\ZNF331

1 of 15

Yes

Hsap\ZNF429

1 of 15

Hsap\ZNF430

1 of 15

Yes

Hsap\ZNF431

1 of 15

Yes

Hsap\ZNF479

1 of 15

Yes

Hsap\ZNF486

1 of 15

Yes

Hsap\ZNF492

1 of 15

Hsap\ZNF502

1 of 15

Yes

Hsap\ZNF506

1 of 15

Yes

Hsap\ZNF519

1 of 15

Yes

Hsap\ZNF530

1 of 15

Yes

Hsap\ZNF543

1 of 15

Hsap\ZNF546

1 of 15

Yes

Hsap\ZNF562

1 of 15

Yes

Hsap\ZNF595

1 of 15

Yes

Hsap\ZNF626

1 of 15

Yes

Hsap\ZNF628

1 of 15

Hsap\ZNF629

1 of 15

Yes

Hsap\ZNF664

1 of 15

Yes

Hsap\ZNF675

1 of 15

Yes

Hsap\ZNF676

1 of 15

Hsap\ZNF678

1 of 15

Hsap\ZNF679

1 of 15

Yes

Hsap\ZNF680

1 of 15

Hsap\ZNF681

1 of 15

Yes

Hsap\ZNF682

1 of 15

Yes

Hsap\ZNF695

1 of 15

Yes

Hsap\ZNF713

1 of 15

Yes

Hsap\ZNF714

1 of 15

Yes

Hsap\ZNF716

1 of 15

Yes

Hsap\ZNF718

1 of 15

Yes

Hsap\ZNF727

1 of 15

Hsap\ZNF729

1 of 15

Hsap\ZNF730

1 of 15

Yes

Hsap\ZNF732

1 of 15

Yes

Hsap\ZNF735

1 of 15

Yes

Hsap\ZNF736

1 of 15

Yes

Hsap\ZNF737

1 of 15

Hsap\ZXDA

1 of 15

Yes

Hsap\ZXDC

1 of 15

Yes

Model Organism Orthologs (via DIOPT v7.1)

Mus musculus (laboratory mouse) (15)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Mmus\Mzf1

1 of 15

Yes

Mmus\Sall2

1 of 15

Yes

Mmus\Zbtb11

1 of 15

Yes

Mmus\Zfp11

1 of 15

Yes

Mmus\Zfp169

1 of 15

Yes

Mmus\Zfp467

1 of 15

Yes

Mmus\Zfp664

1 of 15

Yes

Mmus\Zfp712

1 of 15

Yes

Mmus\Zfp715

1 of 15

Yes

Mmus\Zfp719

1 of 15

Yes

Mmus\Zfp729a

1 of 15

Yes

Mmus\Zfp748

1 of 15

Yes

Mmus\Zfp768

1 of 15

Yes

Mmus\Zfp773

1 of 15

Yes

Mmus\Zfp780b

1 of 15

Yes

Rattus norvegicus (Norway rat) (10)

Rnor\Gzf1

1 of 13

Yes

Rnor\LOC100911699

1 of 13

Yes

Rnor\Mzf1

1 of 13

Yes

Rnor\Sall2

1 of 13

Yes

Rnor\Zbtb11

1 of 13

Yes

Rnor\Zfp17

1 of 13

Yes

Rnor\Zfp143

1 of 13

Yes

Rnor\Zfp418

1 of 13

Yes

Rnor\Zfp467

1 of 13

Yes

Rnor\Zfp773-ps1

1 of 13

Yes

Xenopus tropicalis (Western clawed frog) (0)

No records found.

Danio rerio (Zebrafish) (48)

Drer\zgc:174646

2 of 15

Yes

Drer\itpr1a

1 of 15

Drer\LOC100148466

1 of 15

Yes

Drer\LOC101882544

1 of 15

Yes

Drer\LOC101884305

1 of 15

Yes

Drer\LOC103910729

1 of 15

Yes

Drer\LOC103910825

1 of 15

Yes

Drer\LOC108179205

1 of 15

Yes

Drer\LOC108182290

1 of 15

Yes

Drer\LOC108182318

1 of 15

Yes

Drer\LOC108182721

1 of 15

Yes

Drer\si:cabz01021433.2

1 of 15

Yes

Drer\si:cabz01063885.1

1 of 15

Yes

Drer\si:ch211-207i20.2

1 of 15

Yes

Drer\si:ch211-235i11.4

1 of 15

Yes

Drer\si:ch211-235i11.7

1 of 15

Yes

Drer\si:dkey-7i4.5

1 of 15

Yes

Drer\si:dkey-40j3.3

1 of 15

Yes

Drer\si:dkey-57c22.1

1 of 15

Yes

Drer\si:dkey-57k17.1

1 of 15

Yes

Drer\si:dkey-172k15.13

1 of 15

Yes

Drer\si:dkey-201g16.1

1 of 15

Yes

Drer\si:dkey-253d23.2

1 of 15

Yes

Drer\si:dkeyp-2e4.8

1 of 15

Yes

Drer\si:dkeyp-77c4.5

1 of 15

Yes

Drer\si:dkeyp-113d7.10

1 of 15

Yes

Drer\si: zfos-932h1.3

1 of 15

Yes

Drer\zbtb47a

1 of 15

Yes

Drer\zgc:66448

1 of 15

Drer\zgc:113336

1 of 15

Yes

Drer\zgc:174275

1 of 15

Yes

Drer\zgc:174650

1 of 15

Yes

Drer\zgc:174698

1 of 15

Yes

Drer\zgc:194215

1 of 15

Yes

Drer\znf408

1 of 15

Yes

Drer\znf865

1 of 15

Yes

Drer\znf973

1 of 15

Yes

Drer\znf977

1 of 15

Yes

Drer\znf1023

1 of 15

Yes

Drer\znf1085

1 of 15

Yes

Drer\znf1102

1 of 15

Yes

Drer\znf1113

1 of 15

Yes

Drer\znf1117

1 of 15

Yes

Drer\znf1119

1 of 15

Yes

Drer\znf1122

1 of 15

Yes

Drer\znf1136

1 of 15

Yes

Drer\znf1137

1 of 15

Yes

Drer\znf1141

1 of 15

Yes

Caenorhabditis elegans (Nematode, roundworm) (1)

Cele\Y55F3AM.14

1 of 15

Yes

Arabidopsis thaliana (thale-cress) (1)

Atha\TFIIIA

1 of 9

Yes

Saccharomyces cerevisiae (Brewer's yeast) (0)

No records found.

Schizosaccharomyces pombe (Fission yeast) (0)

No records found.

Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG091904FN )

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Dmel\jim

Drosophila suzukii

Spotted wing Drosophila

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA10941

Drosophila persimilis

Dper\GL25186

Drosophila willistoni

Dwil\GK20499

Drosophila virilis

Dvir\GJ13563

Drosophila mojavensis

Dmoj\GI11869

Drosophila grimshawi

Dgri\GH14766

Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091503SV )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Musca domestica

House fly

Mdoa\17024361

Glossina morsitans

Tsetse fly

Gmor\GMOY001310

Lucilia cuprina

Australian sheep blowfly

Lcup\FF38_10643

Mayetiola destructor

Hessian fly

Mdes\Mdes014077

Mayetiola destructor

Hessian fly

Mdes\Mdes011657

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL008573

Anopheles darlingi

American malaria mosquito

Adar\ADAC007055

Anopheles gambiae

Malaria mosquito

Agam\AGAP011544

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ015000

Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W01YA )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Bombyx mori

Silkmoth

Bmor\BGIBMGA011610

Danaus plexippus

Monarch butterfly

Dple\DPOGS212967-PA

Heliconius melpomene

Postman butterfly

Hmel\HMEL011306

Apis florea

Little honeybee

Aflo\3513809956

Apis mellifera

Western honey bee

Amel\GB54239

Bombus impatiens

Common eastern bumble bee

Bimp\BIMP10674

Bombus terrestris

Buff-tailed bumblebee

Bter\15213467

Linepithema humile

Argentine ant

Lhum\LH25949

Linepithema humile

Argentine ant

Lhum\LH25950

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG009964

Dendroctonus ponderosae

Mountain pine beetle

Dpod\YQE_06743

Dendroctonus ponderosae

Mountain pine beetle

Dpod\YQE_06744

Tribolium castaneum

Red flour beetle

Tcas\TC002621

Tribolium castaneum

Red flour beetle

Tcas\TC002620

Pediculus humanus

Human body louse

Phum\PHUM041520

Rhodnius prolixus

Kissing bug

Rpro\RPRC001284

Cimex lectularius

Bed bug

Clec\CLEC004496

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI002850

Zootermopsis nevadensis

Nevada dampwood termite

Znev\Znev_04014

Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X01VY )

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Ixodes scapularis

Black-legged tick

Isca\ISCW019865

Ixodes scapularis

Black-legged tick

Isca\ISCW019866

Ixodes scapularis

Black-legged tick

Isca\ISCW019860

Ixodes scapularis

Black-legged tick

Isca\ISCW019861

Ixodes scapularis

Black-legged tick

Isca\ISCW019867

Ixodes scapularis

Black-legged tick

Isca\ISCW019864

Stegodyphus mimosarum

African social velvet spider

Smim\KFM65920.1

Daphnia pulex

Water flea

Dpux\DAPPUDRAFT_44467

Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( None identified )

No non-Arthropod Metazoa orthologies identified

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v7.1)

Drosophila melanogaster (Fruit fly) (5)

Gene Symbol

Score

Source

Alignment

1 of 10

1 of 10

1 of 10

dwg

1 of 10

grau

1 of 10

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Model Summary Ribbon

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v7.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Interactions Browser

Summary of Genetic Interactions

esyN Network Diagram

esyN Network Key:

Suppression

Enhancement

View in Interactions Browser

Please look at the allele data for full details of the genetic interactions

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

enhanceable

jim

(Schneiderman et al., 2010)

upd1

suppressible

jim

(Mukherjee et al., 2006)

upd1

enhanceable

jim

(Mukherjee et al., 2006)

External Data

Linkouts

BioGRID - A database of protein and genetic interactions.

68718

DroID - A comprehensive database of gene and protein interactions.

FBgn0027339

InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.

43924

MIST (genetic) - An integrated Molecular Interaction Database

MIST (protein-protein) - An integrated Molecular Interaction Database

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

External Data

Linkouts

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

3-47

Cytogenetic map

80A2-80A4

Sequence location

3L:22,789,233..22,835,194 [-]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

80A2-80A4

Limits computationally determined from genome sequence between P{lacW}l(3)j1B10^j1B10 and P{lacW}l(3)j2C4^j2C4

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

79F-79F

(determined by in situ hybridisation)

(Doerflinger et al., 1998)

79F-79F

(Doerflinger, 1996.4.29)

Experimentally Determined Recombination Data

Location

3-47

(FlyBase, 2016)

3-44.0

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (20)

Bloomington

12624

w¹¹¹⁸; P{GT1}jim^BG01625

42275

w¹¹¹⁸; PBac{jim-GFP.FPTB}VK00037

24202

w¹¹¹⁸; Mi{ET1}jim^MB04583

20927

y¹ w^67c23; P{EPgy2}EY14392

42662

y¹ v¹; P{TRiP.HMS02498}attP40

62748

w¹¹¹⁸; PBac{IT.GAL4}jim^0270-G4

63926

w¹¹¹⁸; PBac{IT.GAL4}jim^0958-G4

32681

y¹ w^*; Mi{MIC}jim^MI00248

Kyoto

123843

w¹¹¹⁸; P{RS3}jim^CB-5834-3

125400

w¹¹¹⁸; P{RS5}jim^5-HA-1795

VDRC

v330460

P{VSH330460}attP40

v12698

w¹¹¹⁸; P{GD4363}v12698

More stocks available...

Genomic Clones (33)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (54)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequences

BDGP DGC clones

Other clones

FI01201

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0027339

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0027339

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

43924

Antibody Information

Laboratory Generated Antibodies

polyclonal

(Doerflinger et al., 1999)

Commercially Available Antibodies

Other Information

Relationship to Other Genes

Source for database identify of

Source for database merge of

Source for merge of: jim ovfc.k ovk

(Doerflinger et al., 1999)

Source for merge of: jim CG11352

(Bayraktaroglu, 2000.4.12)

Source for merge of: jim BcDNA:SD14927

(FlyBase, 1996-)

Additional comments

Source for merge of jim BcDNA:SD14927 was a shared cDNA ( date:030728 ).

(FlyBase, 1996-)

Other Comments

Identification: Enhancer trap screen for genes expressed in follicle cells.

(Doerflinger et al., 1998)

Isolated as an enhancer-trap expressed in ovarian follicles at stage 10.

(Doerflinger et al., 1996)

Origin and Etymology

Discoverer

Etymology

Identification

External Crossreferences and Linkouts ( 79 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

43924

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.