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Gene Dmel\bgm

General Information
Symbol	Dmel\bgm	Species	D. melanogaster
Name	bubblegum	Annotation symbol	CG4501
Feature type	protein_coding_gene	FlyBase ID	FBgn0027348
Gene Model Status	Current	Stock availability	11 publicly available
Also Known As	BG:DS01514.2
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	34F1-34F1	Sequence location	2L:14,013,747..14,019,328 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene bubblegum is referred to in FlyBase by the symbol Dmel\bgm (CG4501, FBgn0027348). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: long-chain fatty acid-CoA ligase activity. There is experimental evidence that it is involved in the biological process: long-chain fatty acid metabolic process. 13 alleles are reported. The phenotypes of these alleles are annotated with: optic lobe; mesothoracic tergum; lamina. It has one annotated transcript and one annotated polypeptide. Protein features are: AMP-dependent synthetase/ligase. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, larval/adult midgut, adult heart, adult fat body, adult female reproductive system, adult male accessory gland, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult crop, larval/adult hindgut, adult Malpighian tubules, larval fat body, adult salivary gland. Comments on Affy2 ProbeSet: ProbeSet 1634048_a_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of bgm. Gene sequence location is 2L:14013747..14019328.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 34F1-34F1   Limits computationally determined from genome sequence between P{lacW}Sosk05224&P{lacW}RpII33k05605 and P{lacW}l(2)34Fak00811&P{PZ}wb09437
Experimentally Determined Cytological Location
Cytogenetic map Notes References 34F1-34F2   (determined by in situ hybridisation)   (Ashburner et al., 1999) 34F1-34F2   (determined by in situ hybridisation)   (Spradling et al., 1999) 34F1-34F2     (Min and Benzer, 1999)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\bgm for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.42
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) bgm-RA FBtr0080590  NM_079959   2500   666
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein bgm-PA   FBpp0080167   73.6   666   8.38     NP_524698   AAF53368
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • AMP-dependent synthetase/ligase (IPR000873)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA202657   AA391612   AA696773   AA698803   AA803692   AE014134 AAF53368   AI062220   AI062891   AI064646   AI135054   AI404572   AI405790   AI405993   AI456040   AI456368   AI518984   AI519921   AI945524   AQ025909   AY118315 AAM48344   BH023729   BI164241   BI164397   BI165049   BI166056   BI170342   BI170795   BI212692   BI216808   BI234077   BI234492   BI236949   BI241759   BI369894   BI370222   BI374952   BI482856   BI633277   BT044224   CK136110   CK445208   CK657733   CL610130   CO178137   CO287256   CO328884   CZ471647   CZ471684   CZ476540   CZ482905   EC083719   EC195754   EC218539   EV578020   EV599373   GH942875   GH947783   GH954721   GH960169   GH960935   GH965073   GH966084   GH966101   GH967885   GH975415   GH978509   GH980756   GH984017
UniProtKB/Swiss-Prot	Q9V3S9
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism   (Fisher et al., 2012) Comment:rapidly degraded embryonic stage 7 -- 8   head mesoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 9 -- 10   head mesoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 11 -- 12   fat body primordium   (Fisher et al., 2012) Comment:reported as fat body specific anlage fat body/gonad primordium   (Fisher et al., 2012) plasmatocyte primordium   (Fisher et al., 2012) Comment:reported as plasmatocytes anlage embryonic stage 13 -- 16   embryonic/larval fat body   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, larval/adult midgut, adult heart, adult fat body, adult female reproductive system, adult male accessory gland, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult crop, larval/adult hindgut, adult Malpighian tubules, larval fat body, adult salivary gland. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    15.325 Larval Midgut    1468.1 Larval Hindgut    156.2 Larval Malpighian Tubules    13.5 Larval Fat Body    158.9 Larval Salivary Gland    40.6 Larval Trachea    41.6 Larval Carcass    83.775 Adult Head    709.1 Adult Eye    335.55 Adult Brain    49.9 Adult Thoracic-Abdominal Ganglion    58.3 Adult Crop    339 Adult Midgut    782.8 Adult Hindgut    404.3 Adult Malpighian Tubules    124.3 Adult Fat Body    1377.2 Adult Salivary Gland    193.3 Adult Heart    959.05 Adult VirginFemale Spermatheca    1625.1 Adult InseminatedFemale Spermatheca    1551.7 Adult Ovary    701.7 Adult Testis    37.2 Adult Male Accessory Gland    548.2 Adult Carcass    932.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    15.325 Larval Midgut  (1468.1) Larval Hindgut    156.2 Larval Malpighian Tubules    13.5 Larval Fat Body    158.9 Larval Salivary Gland    40.6 Larval Trachea    41.6 Larval Carcass    83.775 Adult Head  (709.1) Adult Eye    335.55 Adult Brain    49.9 Adult Thoracic-Abdominal Ganglion    58.3 Adult Crop    339 Adult Midgut  (782.8) Adult Hindgut    404.3 Adult Malpighian Tubules    124.3 Adult Fat Body  (1377.2) Adult Salivary Gland    193.3 Adult Heart  (959.05) Adult VirginFemale Spermatheca  (1625.1) Adult InseminatedFemale Spermatheca  (1551.7) Adult Ovary  (701.7) Adult Testis    37.2 Adult Male Accessory Gland  (548.2) Adult Carcass  (932.1) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    15.325 Larval Midgut  (1468.1) Larval Hindgut    156.2 Larval Malpighian Tubules    13.5 Larval Fat Body    158.9 Larval Salivary Gland    40.6 Larval Trachea    41.6 Larval Carcass    83.775 Adult Head    709.1 Adult Eye    335.55 Adult Brain    49.9 Adult Thoracic-Abdominal Ganglion    58.3 Adult Crop    339 Adult Midgut    782.8 Adult Hindgut    404.3 Adult Malpighian Tubules    124.3 Adult Fat Body  (1377.2) Adult Salivary Gland    193.3 Adult Heart    959.05 Adult VirginFemale Spermatheca  (1625.1) Adult InseminatedFemale Spermatheca  (1551.7) Adult Ovary    701.7 Adult Testis    37.2 Adult Male Accessory Gland    548.2 Adult Carcass    932.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    15.325 Larval Midgut    1468.1 Larval Hindgut    156.2 Larval Malpighian Tubules    13.5 Larval Fat Body    158.9 Larval Salivary Gland    40.6 Larval Trachea    41.6 Larval Carcass    83.775 Adult Head    709.1 Adult Eye    335.55 Adult Brain    49.9 Adult Thoracic-Abdominal Ganglion    58.3 Adult Crop    339 Adult Midgut    782.8 Adult Hindgut    404.3 Adult Malpighian Tubules    124.3 Adult Fat Body    1377.2 Adult Salivary Gland    193.3 Adult Heart    959.05 Adult VirginFemale Spermatheca    1625.1 Adult InseminatedFemale Spermatheca    1551.7 Adult Ovary    701.7 Adult Testis    37.2 Adult Male Accessory Gland    548.2 Adult Carcass    932.1 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    15.325 Larval Midgut    1468.1 Larval Hindgut    156.2 Larval Malpighian Tubules    13.5 Larval Fat Body    158.9 Larval Salivary Gland    40.6 Larval Trachea    41.6 Larval Carcass    83.775 Adult Head    709.1 Adult Eye    335.55 Adult Brain    49.9 Adult Thoracic-Abdominal Ganglion    58.3 Adult Crop    339 Adult Midgut    782.8 Adult Hindgut    404.3 Adult Malpighian Tubules    124.3 Adult Fat Body    1377.2 Adult Salivary Gland    193.3 Adult Heart    959.05 Adult VirginFemale Spermatheca    1625.1 Adult InseminatedFemale Spermatheca    1551.7 Adult Ovary    701.7 Adult Testis    37.2 Adult Male Accessory Gland    548.2 Adult Carcass    932.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    15.325 Larval Midgut  (1468.1) Larval Hindgut    156.2 Larval Malpighian Tubules    13.5 Larval Fat Body    158.9 Larval Salivary Gland    40.6 Larval Trachea    41.6 Larval Carcass    83.775 Adult Head  709.1 Adult Eye    335.55 Adult Brain    49.9 Adult Thoracic-Abdominal Ganglion    58.3 Adult Crop    339 Adult Midgut  782.8 Adult Hindgut    404.3 Adult Malpighian Tubules    124.3 Adult Fat Body  (1377.2) Adult Salivary Gland    193.3 Adult Heart  (959.05) Adult VirginFemale Spermatheca  (1625.1) Adult InseminatedFemale Spermatheca  (1551.7) Adult Ovary  701.7 Adult Testis    37.2 Adult Male Accessory Gland  548.2 Adult Carcass  (932.1) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    15.325 Larval Midgut  1468.1 Larval Hindgut    156.2 Larval Malpighian Tubules    13.5 Larval Fat Body    158.9 Larval Salivary Gland    40.6 Larval Trachea    41.6 Larval Carcass    83.775 Adult Head    709.1 Adult Eye    335.55 Adult Brain    49.9 Adult Thoracic-Abdominal Ganglion    58.3 Adult Crop    339 Adult Midgut    782.8 Adult Hindgut    404.3 Adult Malpighian Tubules    124.3 Adult Fat Body  1377.2 Adult Salivary Gland    193.3 Adult Heart    959.05 Adult VirginFemale Spermatheca  1625.1 Adult InseminatedFemale Spermatheca  1551.7 Adult Ovary    701.7 Adult Testis    37.2 Adult Male Accessory Gland    548.2 Adult Carcass    932.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    15.325 Larval Midgut    1468.1 Larval Hindgut    156.2 Larval Malpighian Tubules    13.5 Larval Fat Body    158.9 Larval Salivary Gland    40.6 Larval Trachea    41.6 Larval Carcass    83.775 Adult Head    709.1 Adult Eye    335.55 Adult Brain    49.9 Adult Thoracic-Abdominal Ganglion    58.3 Adult Crop    339 Adult Midgut    782.8 Adult Hindgut    404.3 Adult Malpighian Tubules    124.3 Adult Fat Body    1377.2 Adult Salivary Gland    193.3 Adult Heart    959.05 Adult VirginFemale Spermatheca    1625.1 Adult InseminatedFemale Spermatheca    1551.7 Adult Ovary    701.7 Adult Testis    37.2 Adult Male Accessory Gland    548.2 Adult Carcass    932.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    709.1   NA  Eye    335.55   NA  Brain    49.9   15.325  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    58.3   NA  Crop    339   1468.1  Midgut    782.8   156.2  Hindgut    404.3   no informative data  Malpighian Tubules    124.3   158.9  Fat Body    1377.2   40.6  Salivary Gland    193.3   NA  Heart    959.05   41.6  Trachea    NA   NA  VirginFemale Spermatheca    1625.1   NA  InseminatedFemale Spermatheca    1551.7   NA  Ovary    701.7   NA  Testis    37.2   NA  Male Accessory Gland    548.2   83.775  Carcass    932.1 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    30 head, virgin 4-day female    46 head, virgin 20-day female    97 head, mated 1-day female    27 head, mated 4-day female    54 head, mated 20-day female    78 head, mated 1-day male    15 head, mated 4-day male    41 head, mated 20-day male    80 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    49 digestive system, 4-day adult    44 digestive system, 20-day adult    24 fat body, larvae L3 wandering    21 fat body, white prepupae    1 fat body, pupae P8    17 carcass, larvae L3 wandering    5 carcass, 1-day adult    29 carcass, 4-day adult    29 carcass, 20-day adult    57 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female  (30) head, virgin 4-day female  (46) head, virgin 20-day female  (97) head, mated 1-day female  (27) head, mated 4-day female  (54) head, mated 20-day female  (78) head, mated 1-day male    15 head, mated 4-day male  (41) head, mated 20-day male  (80) salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    16 digestive system, 1-day adult  (49) digestive system, 4-day adult  (44) digestive system, 20-day adult    24 fat body, larvae L3 wandering    21 fat body, white prepupae    1 fat body, pupae P8    17 carcass, larvae L3 wandering    5 carcass, 1-day adult  (29) carcass, 4-day adult  (29) carcass, 20-day adult  (57) ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    30 head, virgin 4-day female    46 head, virgin 20-day female    97 head, mated 1-day female    27 head, mated 4-day female    54 head, mated 20-day female    78 head, mated 1-day male    15 head, mated 4-day male    41 head, mated 20-day male    80 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    49 digestive system, 4-day adult    44 digestive system, 20-day adult    24 fat body, larvae L3 wandering    21 fat body, white prepupae    1 fat body, pupae P8    17 carcass, larvae L3 wandering    5 carcass, 1-day adult    29 carcass, 4-day adult    29 carcass, 20-day adult    57 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    30 head, virgin 4-day female    46 head, virgin 20-day female    97 head, mated 1-day female    27 head, mated 4-day female    54 head, mated 20-day female    78 head, mated 1-day male    15 head, mated 4-day male    41 head, mated 20-day male    80 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    49 digestive system, 4-day adult    44 digestive system, 20-day adult    24 fat body, larvae L3 wandering    21 fat body, white prepupae    1 fat body, pupae P8    17 carcass, larvae L3 wandering    5 carcass, 1-day adult    29 carcass, 4-day adult    29 carcass, 20-day adult    57 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    12 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    30 head, virgin 4-day female    46 head, virgin 20-day female    97 head, mated 1-day female    27 head, mated 4-day female    54 head, mated 20-day female    78 head, mated 1-day male    15 head, mated 4-day male    41 head, mated 20-day male    80 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    49 digestive system, 4-day adult    44 digestive system, 20-day adult    24 fat body, larvae L3 wandering    21 fat body, white prepupae    1 fat body, pupae P8    17 carcass, larvae L3 wandering    5 carcass, 1-day adult    29 carcass, 4-day adult    29 carcass, 20-day adult    57 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female  30 head, virgin 4-day female  (46) head, virgin 20-day female  (97) head, mated 1-day female  27 head, mated 4-day female  (54) head, mated 20-day female  (78) head, mated 1-day male    15 head, mated 4-day male  (41) head, mated 20-day male  (80) salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    16 digestive system, 1-day adult  (49) digestive system, 4-day adult  (44) digestive system, 20-day adult    24 fat body, larvae L3 wandering    21 fat body, white prepupae    1 fat body, pupae P8    17 carcass, larvae L3 wandering    5 carcass, 1-day adult  29 carcass, 4-day adult  29 carcass, 20-day adult  (57) ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    30 head, virgin 4-day female    46 head, virgin 20-day female    97 head, mated 1-day female    27 head, mated 4-day female    54 head, mated 20-day female    78 head, mated 1-day male    15 head, mated 4-day male    41 head, mated 20-day male    80 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    49 digestive system, 4-day adult    44 digestive system, 20-day adult    24 fat body, larvae L3 wandering    21 fat body, white prepupae    1 fat body, pupae P8    17 carcass, larvae L3 wandering    5 carcass, 1-day adult    29 carcass, 4-day adult    29 carcass, 20-day adult    57 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    1 central nervous system, pupae P8    1 head, virgin 1-day female    30 head, virgin 4-day female    46 head, virgin 20-day female    97 head, mated 1-day female    27 head, mated 4-day female    54 head, mated 20-day female    78 head, mated 1-day male    15 head, mated 4-day male    41 head, mated 20-day male    80 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    16 digestive system, 1-day adult    49 digestive system, 4-day adult    44 digestive system, 20-day adult    24 fat body, larvae L3 wandering    21 fat body, white prepupae    1 fat body, pupae P8    17 carcass, larvae L3 wandering    5 carcass, 1-day adult    29 carcass, 4-day adult    29 carcass, 20-day adult    57 ovary, virgin 4-day female    1 ovary, mated 4-day female    0 testis, mated 4-day male    4 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    95 embryo 02-04hr    6 embryo 04-06hr    19 embryo 06-08hr    12 embryo 08-10hr    17 embryo 10-12hr    24 embryo 12-14hr    16 embryo 14-16hr    13 embryo 16-18hr    9 embryo 18-20hr    38 embryo 20-22hr    199 embryo 22-24hr    181 larva L1    131 larva L2    115 larva L3 12hr old    75 larva L3 puffstage 1-2    48 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    7 white prepupae new    3 white prepupae 12hr    6 white prepupae 24hr    4 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    6 adult male 01day    41 adult male 05day    30 adult male 30day    23 adult female 01day    68 adult female 05day    83 adult female 30day    84 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (95) embryo 02-04hr    6 embryo 04-06hr    19 embryo 06-08hr    12 embryo 08-10hr    17 embryo 10-12hr    24 embryo 12-14hr    16 embryo 14-16hr    13 embryo 16-18hr    9 embryo 18-20hr  (38) embryo 20-22hr  (199) embryo 22-24hr  (181) larva L1  (131) larva L2  (115) larva L3 12hr old  (75) larva L3 puffstage 1-2  (48) larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    7 white prepupae new    3 white prepupae 12hr    6 white prepupae 24hr    4 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    6 adult male 01day  (41) adult male 05day  (30) adult male 30day    23 adult female 01day  (68) adult female 05day  (83) adult female 30day  (84) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    95 embryo 02-04hr    6 embryo 04-06hr    19 embryo 06-08hr    12 embryo 08-10hr    17 embryo 10-12hr    24 embryo 12-14hr    16 embryo 14-16hr    13 embryo 16-18hr    9 embryo 18-20hr    38 embryo 20-22hr  (199) embryo 22-24hr  (181) larva L1  (131) larva L2  (115) larva L3 12hr old    75 larva L3 puffstage 1-2    48 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    7 white prepupae new    3 white prepupae 12hr    6 white prepupae 24hr    4 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    6 adult male 01day    41 adult male 05day    30 adult male 30day    23 adult female 01day    68 adult female 05day    83 adult female 30day    84 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    95 embryo 02-04hr    6 embryo 04-06hr    19 embryo 06-08hr    12 embryo 08-10hr    17 embryo 10-12hr    24 embryo 12-14hr    16 embryo 14-16hr    13 embryo 16-18hr    9 embryo 18-20hr    38 embryo 20-22hr    199 embryo 22-24hr    181 larva L1    131 larva L2    115 larva L3 12hr old    75 larva L3 puffstage 1-2    48 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    7 white prepupae new    3 white prepupae 12hr    6 white prepupae 24hr    4 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    6 adult male 01day    41 adult male 05day    30 adult male 30day    23 adult female 01day    68 adult female 05day    83 adult female 30day    84 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    95 embryo 02-04hr    6 embryo 04-06hr    19 embryo 06-08hr    12 embryo 08-10hr    17 embryo 10-12hr    24 embryo 12-14hr    16 embryo 14-16hr    13 embryo 16-18hr    9 embryo 18-20hr    38 embryo 20-22hr    199 embryo 22-24hr    181 larva L1    131 larva L2    115 larva L3 12hr old    75 larva L3 puffstage 1-2    48 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    7 white prepupae new    3 white prepupae 12hr    6 white prepupae 24hr    4 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    6 adult male 01day    41 adult male 05day    30 adult male 30day    23 adult female 01day    68 adult female 05day    83 adult female 30day    84 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (95) embryo 02-04hr    6 embryo 04-06hr    19 embryo 06-08hr    12 embryo 08-10hr    17 embryo 10-12hr    24 embryo 12-14hr    16 embryo 14-16hr    13 embryo 16-18hr    9 embryo 18-20hr  (38) embryo 20-22hr  (199) embryo 22-24hr  (181) larva L1  (131) larva L2  (115) larva L3 12hr old  (75) larva L3 puffstage 1-2  (48) larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    7 white prepupae new    3 white prepupae 12hr    6 white prepupae 24hr    4 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    6 adult male 01day  (41) adult male 05day  30 adult male 30day    23 adult female 01day  (68) adult female 05day  (83) adult female 30day  (84) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    95 embryo 02-04hr    6 embryo 04-06hr    19 embryo 06-08hr    12 embryo 08-10hr    17 embryo 10-12hr    24 embryo 12-14hr    16 embryo 14-16hr    13 embryo 16-18hr    9 embryo 18-20hr    38 embryo 20-22hr  (199) embryo 22-24hr  (181) larva L1  131 larva L2  115 larva L3 12hr old    75 larva L3 puffstage 1-2    48 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    7 white prepupae new    3 white prepupae 12hr    6 white prepupae 24hr    4 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    6 adult male 01day    41 adult male 05day    30 adult male 30day    23 adult female 01day    68 adult female 05day    83 adult female 30day    84 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    95 embryo 02-04hr    6 embryo 04-06hr    19 embryo 06-08hr    12 embryo 08-10hr    17 embryo 10-12hr    24 embryo 12-14hr    16 embryo 14-16hr    13 embryo 16-18hr    9 embryo 18-20hr    38 embryo 20-22hr    199 embryo 22-24hr    181 larva L1    131 larva L2    115 larva L3 12hr old    75 larva L3 puffstage 1-2    48 larva L3 puffstage 3-6    13 larva L3 puffstage 7-9    7 white prepupae new    3 white prepupae 12hr    6 white prepupae 24hr    4 pupae 2d postWPP    6 pupae 3d postWPP    9 pupae 4d postWPP    6 adult male 01day    41 adult male 05day    30 adult male 30day    23 adult female 01day    68 adult female 05day    83 adult female 30day    84 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2    80 embryonic Kc167    0 embryonic S1    11 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    7 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2  (80) embryonic Kc167    0 embryonic S1    11 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    7 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2    80 embryonic Kc167    0 embryonic S1    11 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    7 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2    80 embryonic Kc167    0 embryonic S1    11 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    7 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2    80 embryonic Kc167    0 embryonic S1    11 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    7 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2  (80) embryonic Kc167    0 embryonic S1    11 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    7 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2    80 embryonic Kc167    0 embryonic S1    11 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    7 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    1 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2    80 embryonic Kc167    0 embryonic S1    11 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    0 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    6 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    1 CNS ML-DmBG1-c1    7 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    41 Cadmium 50 mM 6 hrs, larvae L3    58 Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult    57 Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3    43 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    39 Ethanol 5% 3 hrs, larvae L3    58 Ethanol 10% 3 hrs, larvae L3    42 Caffeine 1.5 mg/ml 4 hrs, larvae L3    44 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    40 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    34 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    64 Rotenone 8 μg 12 hrs, larvae L3    96 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult  (41) Cadmium 50 mM 6 hrs, larvae L3  (58) Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult  (57) Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3  (43) Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3  (39) Ethanol 5% 3 hrs, larvae L3  (58) Ethanol 10% 3 hrs, larvae L3  (42) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (44) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (40) Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult  (34) Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3  (64) Rotenone 8 μg 12 hrs, larvae L3  (96) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    41 Cadmium 50 mM 6 hrs, larvae L3    58 Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult    57 Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3    43 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    39 Ethanol 5% 3 hrs, larvae L3    58 Ethanol 10% 3 hrs, larvae L3    42 Caffeine 1.5 mg/ml 4 hrs, larvae L3    44 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    40 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    34 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    64 Rotenone 8 μg 12 hrs, larvae L3    96 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    41 Cadmium 50 mM 6 hrs, larvae L3    58 Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult    57 Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3    43 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    39 Ethanol 5% 3 hrs, larvae L3    58 Ethanol 10% 3 hrs, larvae L3    42 Caffeine 1.5 mg/ml 4 hrs, larvae L3    44 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    40 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    34 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    64 Rotenone 8 μg 12 hrs, larvae L3    96 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    41 Cadmium 50 mM 6 hrs, larvae L3    58 Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult    57 Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3    43 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    39 Ethanol 5% 3 hrs, larvae L3    58 Ethanol 10% 3 hrs, larvae L3    42 Caffeine 1.5 mg/ml 4 hrs, larvae L3    44 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    40 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    34 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    64 Rotenone 8 μg 12 hrs, larvae L3    96 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult  (41) Cadmium 50 mM 6 hrs, larvae L3  (58) Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult  (57) Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3  (43) Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3  (39) Ethanol 5% 3 hrs, larvae L3  (58) Ethanol 10% 3 hrs, larvae L3  (42) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (44) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (40) Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult  (34) Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3  (64) Rotenone 8 μg 12 hrs, larvae L3  (96) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    41 Cadmium 50 mM 6 hrs, larvae L3    58 Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult    57 Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3    43 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    39 Ethanol 5% 3 hrs, larvae L3    58 Ethanol 10% 3 hrs, larvae L3    42 Caffeine 1.5 mg/ml 4 hrs, larvae L3    44 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    40 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    34 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    64 Rotenone 8 μg 12 hrs, larvae L3    96 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    3 heat shock, 4-day adult    41 Cadmium 50 mM 6 hrs, larvae L3    58 Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult    57 Cadmium 100 mM 48 hrs, 4-day adult    19 Copper 0.5 mM 12 hrs, larvae L3    43 Copper 15 mM 48 hrs, 4-day adult    13 Zinc 5 mM 12 hrs, larvae L3    19 Zinc 4.5 mM 48 hrs, 4-day adult    22 Ethanol 2.5% 3 hrs, larvae L3    39 Ethanol 5% 3 hrs, larvae L3    58 Ethanol 10% 3 hrs, larvae L3    42 Caffeine 1.5 mg/ml 4 hrs, larvae L3    44 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    40 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    34 Paraquat 10 mM 48 hrs, 4-day adult    13 Rotenone 2 μg 12 hrs, larvae L3    64 Rotenone 8 μg 12 hrs, larvae L3    96 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_20
External Data & Images
Linkouts	BDGP expression data • GM14009 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027348 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG4501-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for bgm Stages(s) 1-3 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | pupal stage, with Scer\GAL4pnr-MD237 bgmGD11331 partially lethal - majority die | pupal stage, with Scer\GAL4pnr-MD237 bgmGD11331 viable bgmEY03176 Sterility Allele fertile bgmEY03176 Other Phenotypes Allele aging defective | recessive bgm1 visible, with Scer\GAL4pnr-MD237 bgmGD11331 visual behavior defective | recessive bgm1 Phenotype manifest in Allele lamina bgm1 mesothoracic tergum, with Scer\GAL4pnr-MD237 bgmGD11331 optic lobe bgm1 photoreceptor cell & axon bgm1 retina & cell body bgm1
Classical Alleles ( 9 )
For All Classical Alleles Show
Allele of bgm Class Mutagen Stocks Known lesion bgm1 P-element activity 1 Yes bgmBG01356 P-element activity 1 -- bgmd00529 P-element activity 1 -- bgmd09065 P-element activity 1 -- bgmEY03176 P-element activity 1 -- bgmf00439 piggyBac transposase 1 -- bgmk09909 P-element activity 1 -- bgmd00592 P-element activity 0 -- bgmDG20403 0 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of bgm Class Mutagen Stocks Known lesion bgmGD11331 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes bgmJF03054 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes bgmKK101145 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes bgmNIG.4501R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel8032 (Ryder, 2004.4.26)
Not disrupted in	Df(2L)b84h50 (BDGP Project Members, 1994-1999)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD11331} NA P{KK101145} NA P{NIG.4501R} NA P{TRiP.JF03054} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{GT1}bgmBG01356 NA P{wHy}bgmDG20403 NA PBac{WH}bgmf00439 NA insertion of mobile activating element P{EPgy2}bgmEY03176 NA P{XP}bgmd00529 NA P{XP}bgmd00592 NA P{XP}bgmd09065 NA insertion of enhancer trap P{lacW}bgm1 No P{lacW}bgmk09909 No P{lacW}l(2)SH1380SH1380 No
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
	There is no information supporting a cellular component term for this gene. (Based on a review of available data on: 2008-03-20)
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function
CV term Evidence References
long-chain fatty acid-CoA ligase activity inferred from mutant phenotype (assigned by UniProtKB) (Min and Benzer, 1999)
Biological Process
CV term Evidence References
long-chain fatty acid metabolic process inferred from mutant phenotype (assigned by UniProtKB) (Min and Benzer, 1999)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
long-chain fatty acid-CoA ligase activity inferred from sequence or structural similarity (Ashburner et al., 1999) inferred from sequence or structural similarity with NCBI:NP_599216 (FlyBase, 1992-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions bgm allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0027348 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 44117
Orthologs
OrthoDB Orthologs (48) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6MCXJV Dipteran inclusive ortholog search EOG66T38N Insect inclusive ortholog search EOG6C5BDG Arthropod inclusive ortholog search EOG6G4F5F Metazoa inclusive ortholog search EOG6B61Z3
Orthologs in Drosophila Species (EOG6MCXJV)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\bgm     Drosophila simulans   Dsim\GD23948 Y   Drosophila sechellia   Dsec\GM15457 Y   Drosophila erecta   Dere\GG23906 Y   Drosophila yakuba   Dyak\GE19019 Y   Drosophila ananassae   Dana\GF14276 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA18225 Y   Drosophila persimilis   Dper\GL21255 Y   Drosophila willistoni   Dwil\GK15027 Y   Drosophila virilis   Dvir\GJ18165 Y   Drosophila mojavensis   Dmoj\GI12714 Y   Drosophila grimshawi   Dgri\GH11132 Y
Orthologs in non-Drosophila Dipterans (EOG66T38N)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL005740   Anopheles gambiae Malaria mosquito  Agam\AGAP008596   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ801793
Orthologs in non-Dipteran Insects (EOG6C5BDG)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\Ame.7646 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG010669 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH20562 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH20563 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH20564 Y Atta cephalotes Leafcutter ant  Acep\ACEP26460 Y Atta cephalotes Leafcutter ant  Acep\ACEP26432 Y Atta cephalotes Leafcutter ant  Acep\ACEP26439 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO12600 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL13579 Y Linepithema humile Argentine ant  Lhum\LH21980 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB16057 Y Solenopsis invicta Red fire ant  Sinv\SINV26248 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI005746 Y Bombyx mori Silkmoth  Bmor\BGIBMGA003709 Y Pediculus humanus Human body louse  Phum\PHUM039170 Y Tribolium castaneum Red flour beetle  Tcas\TC004625 Y
Orthologs in non-Insect Arthropods (EOG6G4F5F)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\MAT1-1-1 Y Daphnia pulex Water flea  Dpux\COI Y
Orthologs in non-Arthropod Metazoa (EOG6B61Z3)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_004750gn Y Danio rerio Zebrafish  Drer\ENSDARG00000062077 Y Danio rerio Zebrafish  Drer\acsbg2 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000033634 Y Xenopus tropicalis Western clawed frog  Xtro\acsbg2 Y Xenopus tropicalis Western clawed frog  Xtro\acsbg1 Y Gallus gallus Domestic chicken  Ggal\ACSBG1 Y Gallus gallus Domestic chicken  Ggal\ACSBG2 Y Mus musculus House mouse  Mmus\Acsbg1 Y Mus musculus House mouse  Mmus\Acsbg2 Y Mus musculus House mouse  Mmus\1700061G19Rik Y Rattus norvegicus Norway rat  Rnor\Acsbg1 Y Homo sapiens Human  Hsap\ACSBG2 Y Homo sapiens Human  Hsap\ACSBG1 Y
Human Orthologs (2)
Gene OMIM HGNC Hsap\ACSBG2     Hsap\ACSBG1
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD23948 Drosophila sechellia Dsec\GM15457 Drosophila erecta Dere\GG23906 Drosophila yakuba Dyak\GE19019 Drosophila ananassae Dana\GF14276 Drosophila pseudoobscura pseudoobscura Dpse\GA18225 Drosophila persimilis Dper\GL21255 Drosophila willistoni Dwil\GK15027 Drosophila virilis Dvir\GJ18165 Drosophila mojavensis Dmoj\GI12714 Drosophila grimshawi Dgri\GH11132
Stocks & Reagents
Stocks Listed in FlyBase ( 11 )
Bloomington	28120 w*; P{lacW}bgm1 12755 w1118; P{GT1}bgmBG01356 19994 y1 w67c23; P{EPgy2}bgmEY03176 28639 y1 v1; P{TRiP.JF03054}attP2/TM3, Sb1
Harvard	- P{XP}bgmd00529 - P{XP}bgmd09065 - PBac{WH}bgmf00439
Kyoto	102726 y1 w67c23 ; P{lacW}bgmk09909 / CyO
VDRC	v105635 P{KK101145}VIE-260B v34853 w1118; P{GD11331}v34853 v34854 w1118; P{GD11331}v34854
Genomic Clones ( 1 )
	BACR09N24 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 57 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM14009
Other clones	FI05443
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH01357 GH02258 GH02862 GH12669 GH24329 GH25919 GH26167 GM08372 HL05723 LD02830 LD10778 LD35862 LD36347 LD39768 LP14350 LP24257 RE03872 RE04063 RE04853 RE06076 RE11750 RE12380 RE17823 RE24080 RE29713 RE30196 RE33083 RE38931 RE56231 RE56667 RE62649 RE65634
Other clones	28462 bs13g12 CK01.69B.D4 CK01.69B.D6 Dmel_dig_006504_0599_0896 Dmel_neb_005243_0862_3737 EK055446 EK065336 EK291608 RP004109348 RP004203278 RP004205096 RP004237824 RP004256209 RP004258093 RP004343047 RP004461615 RP004483463 RP004485040 RP004495688 RP004539282 RP004548036 SD27327
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0027348 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 44117
Antibody Information
Other Information
Discoverer
Etymology
	The appellation bubblegum refers to the bubbly appearance of the lamina in the mutant. bgm mutant flies provide a potential model system for studying mechanisms of neurodegenerative disease and screening drugs for treatment of ALD. (Min and Benzer, 1999)
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: BG:DS01514.2 CG4501 (Kodira, 1999.11)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_079959 RefSeq (Proteins) • NP_524698 DDBJ / EMBL / GenBank • AA202657 AA391612 AA696773 AA698803 AA803692 AAF53368 AAM48344 AE003408 AI062220 AI062891 AI064646 AI404572 AI518984 AI945524 AQ025909 AY118315 BH023729 CL610130 CZ471647 CZ471684 CZ476540 CZ482905 Entrez Gene - A searchable database of RefSeq genes. • 44117 UniProtKB/Swiss-Prot • Q9V3S9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • AMP-dependent synthetase/ligase (IPR000873) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GM14009
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0027348 DRSC - Results from RNAi screens. • FBgn0027348 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027348 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG4501-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0027348 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 44117 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 44117 modMine - Data generated by the modENCODE project. • FBgn0027348
Synonyms & Secondary IDs ( 8 )
Reported As
Symbol Synonym	2a9hom (Ashburner et al., 1999.10.12) BG:DS0514.2 (Ashburner et al., 1999) BG:DS01514.2 (Ashburner et al., 1999.10.12, Ashburner et al., 1999, Ashburner et al., 1999, Ashburner et al., 1999, ) bgm (Bhutkar et al., 2008, Sivatchenko and Letsou, 2006, Moorman et al., 2006, Sivatchenko and Letsou, 2007, Izutsu et al., 2012, Sivatchenko and Letsou, 2008, FlyBase Curators, 2008, Shieh and Bonini, 2011, Bushati et al., 2008, Ren et al., 2011, Ellis and Carney, 2010, Reis et al., 2010, Japanese National Institute of Genetics, 2012.5.21) Bgm (Zhao et al., 2012) CG4501 (Bhutkar et al., 2008, Klebes et al., 2005, Oba et al., 2004, Keleman et al., 2009.8.5, Perkins et al., 2009, Ellis and Carney, 2010) unnamed (Spradling et al., 1999)
Name Synonym	bubblegum (Min and Benzer, 1999, Barinaga, 1999, Sivatchenko and Letsou, 2006, Morozova et al., 2006, Ellis and Carney, 2010, Pospisilik et al., 2010)
Secondary FlyBase IDs
	FBgn0027881 FBgn0028908
References ( 53 )
Generate a list of	All references relating to this gene ( 53 )
List References by type	Research paper  ( 19 ) Supplementary material  ( 6 ) Review  ( 3 ) Personal communication to FlyBase  ( 11 ) Abstract  ( 4 ) FlyBase analysis  ( 3 ) News article  ( 1 ) Stock list  ( 1 ) Curated genome annotation  ( 3 ) Website  ( 1 )
Recent research papers ( 4 )
	Izutsu et al., 2012, PLoS ONE 7(3): e33288 Genome features of "dark-fly", a Drosophila line reared long-term in a dark environment. [FBrf0217825] Zhao et al., 2012, J. Clin. Invest. 122(7): 2417--2427 Regulation of lipogenesis by cyclin-dependent kinase 8-mediated control of SREBP-1. [FBrf0218723] Ren et al., 2011, Hum. Mol. Genet. 20(17): 3424--3436 A Drosophila model of the neurodegenerative disease SCA17 reveals a role of RBP-J/Su(H) in modulating the pathological outcome. [FBrf0214639] Shieh and Bonini, 2011, Hum. Mol. Genet. 20(24): 4810--4821 Genes and pathways affected by CAG-repeat RNA-based toxicity in Drosophila. [FBrf0216738] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...