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Gene Dmel\Tim8

General Information
Symbol	Dmel\Tim8	Species	D. melanogaster
Name	Tim8	Annotation symbol	CG1728
Feature type	protein_coding_gene	FlyBase ID	FBgn0027359
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	10B6-10B6	Sequence location	X:11,262,478..11,263,216 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Tim8 is referred to in FlyBase by the symbol Dmel\Tim8 (CG1728, FBgn0027359). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity. Based on sequence similarity, it is predicted to be involved in the biological process: protein targeting to mitochondrion; protein transport. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Tim10/DDP family zinc finger. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed during early larval stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult central nervous system, larval fat body, larval/adult salivary gland, larval trachea, adult ovary, adult testis. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, adult fat body, adult spermathecae, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1637967_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Tim8. Gene sequence location is X:11262478..11263216.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 10B6-10B6   Limits computationally determined from genome sequence between P{EP}CG11756EP1610 and P{EP}CG32666EP1452
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Tim8 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.40 Gene model reviewed during 5.46
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Tim8-RA FBtr0073482  NM_132485   661   88
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Tim8-PA   FBpp0073338   10.1   88   4.80     NP_572713   AAF48036
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Tim10/DDP family zinc finger (IPR004217) MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins • MTDROME01728
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014298 AAF48036   AF142424   AI534085   AI944577   AI945835   AY118649 AAM50018   BF503878   BI353780   BP542344   BP545146   BP545147   BP546078   BP550989   BP552497   BP552498   CO270378   CO286551   CO290457   CO290496   CO292546   CO292989   CO302870   EC068884   EC079812   EC085933   EC086640   EC195319   EC197214   EC202091   EC207820   EC229601   EC235603   EC242281   EV581893
UniProtKB/Swiss-Prot	Q9Y1A3
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult central nervous system, larval fat body, larval/adult salivary gland, larval trachea, adult ovary, adult testis. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, adult fat body, adult spermathecae, adult male accessory gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    488.9 Larval Midgut    291.2 Larval Hindgut    390.4 Larval Malpighian Tubules    192.3 Larval Fat Body    742.2 Larval Salivary Gland    771.9 Larval Trachea    685.5 Larval Carcass    337.575 Adult Head    423.7 Adult Eye    341.675 Adult Brain    566.5 Adult Thoracic-Abdominal Ganglion    571.6 Adult Crop    265.4 Adult Midgut    404.9 Adult Hindgut    332.5 Adult Malpighian Tubules    307.5 Adult Fat Body    451.5 Adult Salivary Gland    507 Adult Heart    348.775 Adult VirginFemale Spermatheca    280.7 Adult InseminatedFemale Spermatheca    312.3 Adult Ovary    776.2 Adult Testis    646.8 Adult Male Accessory Gland    448.9 Adult Carcass    415.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    488.9 Larval Midgut    291.2 Larval Hindgut    390.4 Larval Malpighian Tubules    192.3 Larval Fat Body  (742.2) Larval Salivary Gland  (771.9) Larval Trachea  (685.5) Larval Carcass    337.575 Adult Head    423.7 Adult Eye    341.675 Adult Brain  (566.5) Adult Thoracic-Abdominal Ganglion  (571.6) Adult Crop    265.4 Adult Midgut    404.9 Adult Hindgut    332.5 Adult Malpighian Tubules    307.5 Adult Fat Body    451.5 Adult Salivary Gland  507 Adult Heart    348.775 Adult VirginFemale Spermatheca    280.7 Adult InseminatedFemale Spermatheca    312.3 Adult Ovary  (776.2) Adult Testis  (646.8) Adult Male Accessory Gland    448.9 Adult Carcass    415.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    488.9 Larval Midgut    291.2 Larval Hindgut    390.4 Larval Malpighian Tubules    192.3 Larval Fat Body    742.2 Larval Salivary Gland    771.9 Larval Trachea    685.5 Larval Carcass    337.575 Adult Head    423.7 Adult Eye    341.675 Adult Brain    566.5 Adult Thoracic-Abdominal Ganglion    571.6 Adult Crop    265.4 Adult Midgut    404.9 Adult Hindgut    332.5 Adult Malpighian Tubules    307.5 Adult Fat Body    451.5 Adult Salivary Gland    507 Adult Heart    348.775 Adult VirginFemale Spermatheca    280.7 Adult InseminatedFemale Spermatheca    312.3 Adult Ovary    776.2 Adult Testis    646.8 Adult Male Accessory Gland    448.9 Adult Carcass    415.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    488.9 Larval Midgut    291.2 Larval Hindgut    390.4 Larval Malpighian Tubules    192.3 Larval Fat Body    742.2 Larval Salivary Gland    771.9 Larval Trachea    685.5 Larval Carcass    337.575 Adult Head    423.7 Adult Eye    341.675 Adult Brain    566.5 Adult Thoracic-Abdominal Ganglion    571.6 Adult Crop    265.4 Adult Midgut    404.9 Adult Hindgut    332.5 Adult Malpighian Tubules    307.5 Adult Fat Body    451.5 Adult Salivary Gland    507 Adult Heart    348.775 Adult VirginFemale Spermatheca    280.7 Adult InseminatedFemale Spermatheca    312.3 Adult Ovary    776.2 Adult Testis    646.8 Adult Male Accessory Gland    448.9 Adult Carcass    415.9 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    488.9 Larval Midgut    291.2 Larval Hindgut    390.4 Larval Malpighian Tubules    192.3 Larval Fat Body    742.2 Larval Salivary Gland    771.9 Larval Trachea    685.5 Larval Carcass    337.575 Adult Head    423.7 Adult Eye    341.675 Adult Brain    566.5 Adult Thoracic-Abdominal Ganglion    571.6 Adult Crop    265.4 Adult Midgut    404.9 Adult Hindgut    332.5 Adult Malpighian Tubules    307.5 Adult Fat Body    451.5 Adult Salivary Gland    507 Adult Heart    348.775 Adult VirginFemale Spermatheca    280.7 Adult InseminatedFemale Spermatheca    312.3 Adult Ovary    776.2 Adult Testis    646.8 Adult Male Accessory Gland    448.9 Adult Carcass    415.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    488.9 Larval Midgut    291.2 Larval Hindgut    390.4 Larval Malpighian Tubules    192.3 Larval Fat Body  742.2 Larval Salivary Gland  771.9 Larval Trachea  685.5 Larval Carcass    337.575 Adult Head    423.7 Adult Eye    341.675 Adult Brain  566.5 Adult Thoracic-Abdominal Ganglion  571.6 Adult Crop    265.4 Adult Midgut    404.9 Adult Hindgut    332.5 Adult Malpighian Tubules    307.5 Adult Fat Body    451.5 Adult Salivary Gland  507 Adult Heart    348.775 Adult VirginFemale Spermatheca    280.7 Adult InseminatedFemale Spermatheca    312.3 Adult Ovary  776.2 Adult Testis  646.8 Adult Male Accessory Gland    448.9 Adult Carcass    415.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    488.9 Larval Midgut    291.2 Larval Hindgut    390.4 Larval Malpighian Tubules    192.3 Larval Fat Body    742.2 Larval Salivary Gland    771.9 Larval Trachea    685.5 Larval Carcass    337.575 Adult Head    423.7 Adult Eye    341.675 Adult Brain    566.5 Adult Thoracic-Abdominal Ganglion    571.6 Adult Crop    265.4 Adult Midgut    404.9 Adult Hindgut    332.5 Adult Malpighian Tubules    307.5 Adult Fat Body    451.5 Adult Salivary Gland    507 Adult Heart    348.775 Adult VirginFemale Spermatheca    280.7 Adult InseminatedFemale Spermatheca    312.3 Adult Ovary    776.2 Adult Testis    646.8 Adult Male Accessory Gland    448.9 Adult Carcass    415.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    488.9 Larval Midgut    291.2 Larval Hindgut    390.4 Larval Malpighian Tubules    192.3 Larval Fat Body    742.2 Larval Salivary Gland    771.9 Larval Trachea    685.5 Larval Carcass    337.575 Adult Head    423.7 Adult Eye    341.675 Adult Brain    566.5 Adult Thoracic-Abdominal Ganglion    571.6 Adult Crop    265.4 Adult Midgut    404.9 Adult Hindgut    332.5 Adult Malpighian Tubules    307.5 Adult Fat Body    451.5 Adult Salivary Gland    507 Adult Heart    348.775 Adult VirginFemale Spermatheca    280.7 Adult InseminatedFemale Spermatheca    312.3 Adult Ovary    776.2 Adult Testis    646.8 Adult Male Accessory Gland    448.9 Adult Carcass    415.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    423.7   NA  Eye    341.675   NA  Brain    566.5   488.9  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    571.6   NA  Crop    265.4   291.2  Midgut    404.9   390.4  Hindgut    332.5   192.3  Malpighian Tubules    307.5   742.2  Fat Body    451.5   771.9  Salivary Gland    507   NA  Heart    348.775   685.5  Trachea    NA   NA  VirginFemale Spermatheca    280.7   NA  InseminatedFemale Spermatheca    312.3   NA  Ovary    776.2   NA  Testis    646.8   NA  Male Accessory Gland    448.9   337.575  Carcass    415.9 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    135 central nervous system, larvae L3    65 central nervous system, pupae P8    65 head, virgin 1-day female    67 head, virgin 4-day female    37 head, virgin 20-day female    58 head, mated 1-day female    37 head, mated 4-day female    49 head, mated 20-day female    42 head, mated 1-day male    64 head, mated 4-day male    63 head, mated 20-day male    66 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    11 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    59 digestive system, 4-day adult    56 digestive system, 20-day adult    55 fat body, larvae L3 wandering    21 fat body, white prepupae    96 fat body, pupae P8    107 carcass, larvae L3 wandering    70 carcass, 1-day adult    43 carcass, 4-day adult    61 carcass, 20-day adult    55 ovary, virgin 4-day female    195 ovary, mated 4-day female    132 testis, mated 4-day male    185 accessory gland, mated 4-day male    59 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (135) central nervous system, larvae L3  (65) central nervous system, pupae P8  (65) head, virgin 1-day female  (67) head, virgin 4-day female  (37) head, virgin 20-day female  (58) head, mated 1-day female  (37) head, mated 4-day female  (49) head, mated 20-day female  (42) head, mated 1-day male  (64) head, mated 4-day male  (63) head, mated 20-day male  (66) salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    11 digestive system, larvae L3 wandering  (45) digestive system, 1-day adult  (59) digestive system, 4-day adult  (56) digestive system, 20-day adult  (55) fat body, larvae L3 wandering    21 fat body, white prepupae  (96) fat body, pupae P8  (107) carcass, larvae L3 wandering  (70) carcass, 1-day adult  (43) carcass, 4-day adult  (61) carcass, 20-day adult  (55) ovary, virgin 4-day female  (195) ovary, mated 4-day female  (132) testis, mated 4-day male  (185) accessory gland, mated 4-day male  (59) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (135) central nervous system, larvae L3    65 central nervous system, pupae P8    65 head, virgin 1-day female    67 head, virgin 4-day female    37 head, virgin 20-day female    58 head, mated 1-day female    37 head, mated 4-day female    49 head, mated 20-day female    42 head, mated 1-day male    64 head, mated 4-day male    63 head, mated 20-day male    66 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    11 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    59 digestive system, 4-day adult    56 digestive system, 20-day adult    55 fat body, larvae L3 wandering    21 fat body, white prepupae    96 fat body, pupae P8  107 carcass, larvae L3 wandering    70 carcass, 1-day adult    43 carcass, 4-day adult    61 carcass, 20-day adult    55 ovary, virgin 4-day female  (195) ovary, mated 4-day female  (132) testis, mated 4-day male  (185) accessory gland, mated 4-day male    59 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    135 central nervous system, larvae L3    65 central nervous system, pupae P8    65 head, virgin 1-day female    67 head, virgin 4-day female    37 head, virgin 20-day female    58 head, mated 1-day female    37 head, mated 4-day female    49 head, mated 20-day female    42 head, mated 1-day male    64 head, mated 4-day male    63 head, mated 20-day male    66 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    11 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    59 digestive system, 4-day adult    56 digestive system, 20-day adult    55 fat body, larvae L3 wandering    21 fat body, white prepupae    96 fat body, pupae P8    107 carcass, larvae L3 wandering    70 carcass, 1-day adult    43 carcass, 4-day adult    61 carcass, 20-day adult    55 ovary, virgin 4-day female    195 ovary, mated 4-day female    132 testis, mated 4-day male    185 accessory gland, mated 4-day male    59 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    135 central nervous system, larvae L3    65 central nervous system, pupae P8    65 head, virgin 1-day female    67 head, virgin 4-day female    37 head, virgin 20-day female    58 head, mated 1-day female    37 head, mated 4-day female    49 head, mated 20-day female    42 head, mated 1-day male    64 head, mated 4-day male    63 head, mated 20-day male    66 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    11 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    59 digestive system, 4-day adult    56 digestive system, 20-day adult    55 fat body, larvae L3 wandering    21 fat body, white prepupae    96 fat body, pupae P8    107 carcass, larvae L3 wandering    70 carcass, 1-day adult    43 carcass, 4-day adult    61 carcass, 20-day adult    55 ovary, virgin 4-day female    195 ovary, mated 4-day female    132 testis, mated 4-day male    185 accessory gland, mated 4-day male    59 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (135) central nervous system, larvae L3  (65) central nervous system, pupae P8  (65) head, virgin 1-day female  (67) head, virgin 4-day female  (37) head, virgin 20-day female  (58) head, mated 1-day female  (37) head, mated 4-day female  (49) head, mated 20-day female  (42) head, mated 1-day male  (64) head, mated 4-day male  (63) head, mated 20-day male  (66) salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    11 digestive system, larvae L3 wandering  (45) digestive system, 1-day adult  (59) digestive system, 4-day adult  (56) digestive system, 20-day adult  (55) fat body, larvae L3 wandering    21 fat body, white prepupae  (96) fat body, pupae P8  (107) carcass, larvae L3 wandering  (70) carcass, 1-day adult  (43) carcass, 4-day adult  (61) carcass, 20-day adult  (55) ovary, virgin 4-day female  (195) ovary, mated 4-day female  (132) testis, mated 4-day male  (185) accessory gland, mated 4-day male  (59) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  135 central nervous system, larvae L3    65 central nervous system, pupae P8    65 head, virgin 1-day female    67 head, virgin 4-day female    37 head, virgin 20-day female    58 head, mated 1-day female    37 head, mated 4-day female    49 head, mated 20-day female    42 head, mated 1-day male    64 head, mated 4-day male    63 head, mated 20-day male    66 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    11 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    59 digestive system, 4-day adult    56 digestive system, 20-day adult    55 fat body, larvae L3 wandering    21 fat body, white prepupae    96 fat body, pupae P8  107 carcass, larvae L3 wandering    70 carcass, 1-day adult    43 carcass, 4-day adult    61 carcass, 20-day adult    55 ovary, virgin 4-day female  (195) ovary, mated 4-day female  132 testis, mated 4-day male  (185) accessory gland, mated 4-day male    59 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    135 central nervous system, larvae L3    65 central nervous system, pupae P8    65 head, virgin 1-day female    67 head, virgin 4-day female    37 head, virgin 20-day female    58 head, mated 1-day female    37 head, mated 4-day female    49 head, mated 20-day female    42 head, mated 1-day male    64 head, mated 4-day male    63 head, mated 20-day male    66 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    11 digestive system, larvae L3 wandering    45 digestive system, 1-day adult    59 digestive system, 4-day adult    56 digestive system, 20-day adult    55 fat body, larvae L3 wandering    21 fat body, white prepupae    96 fat body, pupae P8    107 carcass, larvae L3 wandering    70 carcass, 1-day adult    43 carcass, 4-day adult    61 carcass, 20-day adult    55 ovary, virgin 4-day female    195 ovary, mated 4-day female    132 testis, mated 4-day male    185 accessory gland, mated 4-day male    59 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed during early larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    109 embryo 02-04hr    28 embryo 04-06hr    49 embryo 06-08hr    52 embryo 08-10hr    66 embryo 10-12hr    86 embryo 12-14hr    74 embryo 14-16hr    83 embryo 16-18hr    93 embryo 18-20hr    71 embryo 20-22hr    67 embryo 22-24hr    61 larva L1    140 larva L2    135 larva L3 12hr old    90 larva L3 puffstage 1-2    39 larva L3 puffstage 3-6    38 larva L3 puffstage 7-9    46 white prepupae new    43 white prepupae 12hr    35 white prepupae 24hr    51 pupae 2d postWPP    74 pupae 3d postWPP    83 pupae 4d postWPP    64 adult male 01day    74 adult male 05day    84 adult male 30day    76 adult female 01day    77 adult female 05day    96 adult female 30day    102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (109) embryo 02-04hr  (28) embryo 04-06hr  (49) embryo 06-08hr  (52) embryo 08-10hr  (66) embryo 10-12hr  (86) embryo 12-14hr  (74) embryo 14-16hr  (83) embryo 16-18hr  (93) embryo 18-20hr  (71) embryo 20-22hr  (67) embryo 22-24hr  (61) larva L1  (140) larva L2  (135) larva L3 12hr old  (90) larva L3 puffstage 1-2  (39) larva L3 puffstage 3-6  (38) larva L3 puffstage 7-9  (46) white prepupae new  (43) white prepupae 12hr  (35) white prepupae 24hr  (51) pupae 2d postWPP  (74) pupae 3d postWPP  (83) pupae 4d postWPP  (64) adult male 01day  (74) adult male 05day  (84) adult male 30day  (76) adult female 01day  (77) adult female 05day  (96) adult female 30day  (102) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (109) embryo 02-04hr    28 embryo 04-06hr    49 embryo 06-08hr    52 embryo 08-10hr    66 embryo 10-12hr    86 embryo 12-14hr    74 embryo 14-16hr    83 embryo 16-18hr    93 embryo 18-20hr    71 embryo 20-22hr    67 embryo 22-24hr    61 larva L1  (140) larva L2  (135) larva L3 12hr old    90 larva L3 puffstage 1-2    39 larva L3 puffstage 3-6    38 larva L3 puffstage 7-9    46 white prepupae new    43 white prepupae 12hr    35 white prepupae 24hr    51 pupae 2d postWPP    74 pupae 3d postWPP    83 pupae 4d postWPP    64 adult male 01day    74 adult male 05day    84 adult male 30day    76 adult female 01day    77 adult female 05day    96 adult female 30day  102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    109 embryo 02-04hr    28 embryo 04-06hr    49 embryo 06-08hr    52 embryo 08-10hr    66 embryo 10-12hr    86 embryo 12-14hr    74 embryo 14-16hr    83 embryo 16-18hr    93 embryo 18-20hr    71 embryo 20-22hr    67 embryo 22-24hr    61 larva L1    140 larva L2    135 larva L3 12hr old    90 larva L3 puffstage 1-2    39 larva L3 puffstage 3-6    38 larva L3 puffstage 7-9    46 white prepupae new    43 white prepupae 12hr    35 white prepupae 24hr    51 pupae 2d postWPP    74 pupae 3d postWPP    83 pupae 4d postWPP    64 adult male 01day    74 adult male 05day    84 adult male 30day    76 adult female 01day    77 adult female 05day    96 adult female 30day    102 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    109 embryo 02-04hr    28 embryo 04-06hr    49 embryo 06-08hr    52 embryo 08-10hr    66 embryo 10-12hr    86 embryo 12-14hr    74 embryo 14-16hr    83 embryo 16-18hr    93 embryo 18-20hr    71 embryo 20-22hr    67 embryo 22-24hr    61 larva L1    140 larva L2    135 larva L3 12hr old    90 larva L3 puffstage 1-2    39 larva L3 puffstage 3-6    38 larva L3 puffstage 7-9    46 white prepupae new    43 white prepupae 12hr    35 white prepupae 24hr    51 pupae 2d postWPP    74 pupae 3d postWPP    83 pupae 4d postWPP    64 adult male 01day    74 adult male 05day    84 adult male 30day    76 adult female 01day    77 adult female 05day    96 adult female 30day    102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (109) embryo 02-04hr  28 embryo 04-06hr  (49) embryo 06-08hr  (52) embryo 08-10hr  (66) embryo 10-12hr  (86) embryo 12-14hr  (74) embryo 14-16hr  (83) embryo 16-18hr  (93) embryo 18-20hr  (71) embryo 20-22hr  (67) embryo 22-24hr  (61) larva L1  (140) larva L2  (135) larva L3 12hr old  (90) larva L3 puffstage 1-2  (39) larva L3 puffstage 3-6  (38) larva L3 puffstage 7-9  (46) white prepupae new  (43) white prepupae 12hr  (35) white prepupae 24hr  (51) pupae 2d postWPP  (74) pupae 3d postWPP  (83) pupae 4d postWPP  (64) adult male 01day  (74) adult male 05day  (84) adult male 30day  (76) adult female 01day  (77) adult female 05day  (96) adult female 30day  (102) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  109 embryo 02-04hr    28 embryo 04-06hr    49 embryo 06-08hr    52 embryo 08-10hr    66 embryo 10-12hr    86 embryo 12-14hr    74 embryo 14-16hr    83 embryo 16-18hr    93 embryo 18-20hr    71 embryo 20-22hr    67 embryo 22-24hr    61 larva L1  140 larva L2  135 larva L3 12hr old    90 larva L3 puffstage 1-2    39 larva L3 puffstage 3-6    38 larva L3 puffstage 7-9    46 white prepupae new    43 white prepupae 12hr    35 white prepupae 24hr    51 pupae 2d postWPP    74 pupae 3d postWPP    83 pupae 4d postWPP    64 adult male 01day    74 adult male 05day    84 adult male 30day    76 adult female 01day    77 adult female 05day    96 adult female 30day  102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    109 embryo 02-04hr    28 embryo 04-06hr    49 embryo 06-08hr    52 embryo 08-10hr    66 embryo 10-12hr    86 embryo 12-14hr    74 embryo 14-16hr    83 embryo 16-18hr    93 embryo 18-20hr    71 embryo 20-22hr    67 embryo 22-24hr    61 larva L1    140 larva L2    135 larva L3 12hr old    90 larva L3 puffstage 1-2    39 larva L3 puffstage 3-6    38 larva L3 puffstage 7-9    46 white prepupae new    43 white prepupae 12hr    35 white prepupae 24hr    51 pupae 2d postWPP    74 pupae 3d postWPP    83 pupae 4d postWPP    64 adult male 01day    74 adult male 05day    84 adult male 30day    76 adult female 01day    77 adult female 05day    96 adult female 30day    102 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    210 Schneider line 2 Sg4    147 embryonic 1182-4H    180 embryonic GM2    157 embryonic Kc167    150 embryonic S1    189 embryonic S3    230 leg disc CME L1    115 wing disc CME-W2    201 wing disc ML-DmD8    160 wing disc ML-DmD9    190 wing disc ML-DmD16-c3    124 wing disc ML-DmD21    231 wing disc ML-DmD32    92 haltere disc ML-DmD17-c3    201 eye-antennal disc ML-DmD11    176 antennal disc ML-DmD20-c5    147 mixed discs ML-DmD4-c1    97 CNS ML-DmBG1-c1    202 CNS ML-DmBG2-c2    229 tumorous blood cells mbn2    280 ovary fGS/OSS    81 ovary OSC    135 ovary OSS    48 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (210) Schneider line 2 Sg4  (147) embryonic 1182-4H  (180) embryonic GM2  (157) embryonic Kc167  (150) embryonic S1  (189) embryonic S3  (230) leg disc CME L1  (115) wing disc CME-W2  (201) wing disc ML-DmD8  (160) wing disc ML-DmD9  (190) wing disc ML-DmD16-c3  (124) wing disc ML-DmD21  (231) wing disc ML-DmD32  (92) haltere disc ML-DmD17-c3  (201) eye-antennal disc ML-DmD11  (176) antennal disc ML-DmD20-c5  (147) mixed discs ML-DmD4-c1  (97) CNS ML-DmBG1-c1  (202) CNS ML-DmBG2-c2  (229) tumorous blood cells mbn2  (280) ovary fGS/OSS  (81) ovary OSC  (135) ovary OSS  (48) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (210) Schneider line 2 Sg4  (147) embryonic 1182-4H  (180) embryonic GM2  (157) embryonic Kc167  (150) embryonic S1  (189) embryonic S3  (230) leg disc CME L1  (115) wing disc CME-W2  (201) wing disc ML-DmD8  (160) wing disc ML-DmD9  (190) wing disc ML-DmD16-c3  (124) wing disc ML-DmD21  (231) wing disc ML-DmD32    92 haltere disc ML-DmD17-c3  (201) eye-antennal disc ML-DmD11  (176) antennal disc ML-DmD20-c5  (147) mixed discs ML-DmD4-c1    97 CNS ML-DmBG1-c1  (202) CNS ML-DmBG2-c2  (229) tumorous blood cells mbn2  (280) ovary fGS/OSS    81 ovary OSC  (135) ovary OSS    48 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    210 Schneider line 2 Sg4    147 embryonic 1182-4H    180 embryonic GM2    157 embryonic Kc167    150 embryonic S1    189 embryonic S3    230 leg disc CME L1    115 wing disc CME-W2    201 wing disc ML-DmD8    160 wing disc ML-DmD9    190 wing disc ML-DmD16-c3    124 wing disc ML-DmD21    231 wing disc ML-DmD32    92 haltere disc ML-DmD17-c3    201 eye-antennal disc ML-DmD11    176 antennal disc ML-DmD20-c5    147 mixed discs ML-DmD4-c1    97 CNS ML-DmBG1-c1    202 CNS ML-DmBG2-c2    229 tumorous blood cells mbn2    280 ovary fGS/OSS    81 ovary OSC    135 ovary OSS    48 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    210 Schneider line 2 Sg4    147 embryonic 1182-4H    180 embryonic GM2    157 embryonic Kc167    150 embryonic S1    189 embryonic S3    230 leg disc CME L1    115 wing disc CME-W2    201 wing disc ML-DmD8    160 wing disc ML-DmD9    190 wing disc ML-DmD16-c3    124 wing disc ML-DmD21    231 wing disc ML-DmD32    92 haltere disc ML-DmD17-c3    201 eye-antennal disc ML-DmD11    176 antennal disc ML-DmD20-c5    147 mixed discs ML-DmD4-c1    97 CNS ML-DmBG1-c1    202 CNS ML-DmBG2-c2    229 tumorous blood cells mbn2    280 ovary fGS/OSS    81 ovary OSC    135 ovary OSS    48 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (210) Schneider line 2 Sg4  (147) embryonic 1182-4H  (180) embryonic GM2  (157) embryonic Kc167  (150) embryonic S1  (189) embryonic S3  (230) leg disc CME L1  (115) wing disc CME-W2  (201) wing disc ML-DmD8  (160) wing disc ML-DmD9  (190) wing disc ML-DmD16-c3  (124) wing disc ML-DmD21  (231) wing disc ML-DmD32  (92) haltere disc ML-DmD17-c3  (201) eye-antennal disc ML-DmD11  (176) antennal disc ML-DmD20-c5  (147) mixed discs ML-DmD4-c1  (97) CNS ML-DmBG1-c1  (202) CNS ML-DmBG2-c2  (229) tumorous blood cells mbn2  (280) ovary fGS/OSS  (81) ovary OSC  (135) ovary OSS  (48) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (210) Schneider line 2 Sg4  (147) embryonic 1182-4H  (180) embryonic GM2  (157) embryonic Kc167  (150) embryonic S1  (189) embryonic S3  (230) leg disc CME L1  115 wing disc CME-W2  (201) wing disc ML-DmD8  (160) wing disc ML-DmD9  (190) wing disc ML-DmD16-c3  124 wing disc ML-DmD21  (231) wing disc ML-DmD32    92 haltere disc ML-DmD17-c3  (201) eye-antennal disc ML-DmD11  (176) antennal disc ML-DmD20-c5  (147) mixed discs ML-DmD4-c1    97 CNS ML-DmBG1-c1  (202) CNS ML-DmBG2-c2  (229) tumorous blood cells mbn2  (280) ovary fGS/OSS    81 ovary OSC  135 ovary OSS    48 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    210 Schneider line 2 Sg4    147 embryonic 1182-4H    180 embryonic GM2    157 embryonic Kc167    150 embryonic S1    189 embryonic S3    230 leg disc CME L1    115 wing disc CME-W2    201 wing disc ML-DmD8    160 wing disc ML-DmD9    190 wing disc ML-DmD16-c3    124 wing disc ML-DmD21    231 wing disc ML-DmD32    92 haltere disc ML-DmD17-c3    201 eye-antennal disc ML-DmD11    176 antennal disc ML-DmD20-c5    147 mixed discs ML-DmD4-c1    97 CNS ML-DmBG1-c1    202 CNS ML-DmBG2-c2    229 tumorous blood cells mbn2    280 ovary fGS/OSS    81 ovary OSC    135 ovary OSS    48 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    57 cold shock, 4-day adult    39 heat shock, 4-day adult    106 Cadmium 50 mM 6 hrs, larvae L3    93 Cadmium 50 mM 12 hrs, larvae L3    94 Cadmium 50 mM 48 hrs, 4-day adult    108 Cadmium 100 mM 48 hrs, 4-day adult    101 Copper 0.5 mM 12 hrs, larvae L3    79 Copper 15 mM 48 hrs, 4-day adult    53 Zinc 5 mM 12 hrs, larvae L3    51 Zinc 4.5 mM 48 hrs, 4-day adult    52 Ethanol 2.5% 3 hrs, larvae L3    146 Ethanol 5% 3 hrs, larvae L3    100 Ethanol 10% 3 hrs, larvae L3    103 Caffeine 1.5 mg/ml 4 hrs, larvae L3    52 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    109 Caffeine 25 mg/ml 48 hrs, 4-day adult    53 Paraquat 5 mM 48 hrs, 4-day adult    120 Paraquat 10 mM 48 hrs, 4-day adult    109 Rotenone 2 μg 12 hrs, larvae L3    138 Rotenone 8 μg 12 hrs, larvae L3    125 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (57) cold shock, 4-day adult  (39) heat shock, 4-day adult  (106) Cadmium 50 mM 6 hrs, larvae L3  (93) Cadmium 50 mM 12 hrs, larvae L3  (94) Cadmium 50 mM 48 hrs, 4-day adult  (108) Cadmium 100 mM 48 hrs, 4-day adult  (101) Copper 0.5 mM 12 hrs, larvae L3  (79) Copper 15 mM 48 hrs, 4-day adult  (53) Zinc 5 mM 12 hrs, larvae L3  (51) Zinc 4.5 mM 48 hrs, 4-day adult  (52) Ethanol 2.5% 3 hrs, larvae L3  (146) Ethanol 5% 3 hrs, larvae L3  (100) Ethanol 10% 3 hrs, larvae L3  (103) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (52) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (109) Caffeine 25 mg/ml 48 hrs, 4-day adult  (53) Paraquat 5 mM 48 hrs, 4-day adult  (120) Paraquat 10 mM 48 hrs, 4-day adult  (109) Rotenone 2 μg 12 hrs, larvae L3  (138) Rotenone 8 μg 12 hrs, larvae L3  (125) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    57 cold shock, 4-day adult    39 heat shock, 4-day adult  106 Cadmium 50 mM 6 hrs, larvae L3    93 Cadmium 50 mM 12 hrs, larvae L3    94 Cadmium 50 mM 48 hrs, 4-day adult  (108) Cadmium 100 mM 48 hrs, 4-day adult  101 Copper 0.5 mM 12 hrs, larvae L3    79 Copper 15 mM 48 hrs, 4-day adult    53 Zinc 5 mM 12 hrs, larvae L3    51 Zinc 4.5 mM 48 hrs, 4-day adult    52 Ethanol 2.5% 3 hrs, larvae L3  (146) Ethanol 5% 3 hrs, larvae L3    100 Ethanol 10% 3 hrs, larvae L3  103 Caffeine 1.5 mg/ml 4 hrs, larvae L3    52 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (109) Caffeine 25 mg/ml 48 hrs, 4-day adult    53 Paraquat 5 mM 48 hrs, 4-day adult  (120) Paraquat 10 mM 48 hrs, 4-day adult  (109) Rotenone 2 μg 12 hrs, larvae L3  (138) Rotenone 8 μg 12 hrs, larvae L3  (125) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    57 cold shock, 4-day adult    39 heat shock, 4-day adult    106 Cadmium 50 mM 6 hrs, larvae L3    93 Cadmium 50 mM 12 hrs, larvae L3    94 Cadmium 50 mM 48 hrs, 4-day adult    108 Cadmium 100 mM 48 hrs, 4-day adult    101 Copper 0.5 mM 12 hrs, larvae L3    79 Copper 15 mM 48 hrs, 4-day adult    53 Zinc 5 mM 12 hrs, larvae L3    51 Zinc 4.5 mM 48 hrs, 4-day adult    52 Ethanol 2.5% 3 hrs, larvae L3    146 Ethanol 5% 3 hrs, larvae L3    100 Ethanol 10% 3 hrs, larvae L3    103 Caffeine 1.5 mg/ml 4 hrs, larvae L3    52 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    109 Caffeine 25 mg/ml 48 hrs, 4-day adult    53 Paraquat 5 mM 48 hrs, 4-day adult    120 Paraquat 10 mM 48 hrs, 4-day adult    109 Rotenone 2 μg 12 hrs, larvae L3    138 Rotenone 8 μg 12 hrs, larvae L3    125 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    57 cold shock, 4-day adult    39 heat shock, 4-day adult    106 Cadmium 50 mM 6 hrs, larvae L3    93 Cadmium 50 mM 12 hrs, larvae L3    94 Cadmium 50 mM 48 hrs, 4-day adult    108 Cadmium 100 mM 48 hrs, 4-day adult    101 Copper 0.5 mM 12 hrs, larvae L3    79 Copper 15 mM 48 hrs, 4-day adult    53 Zinc 5 mM 12 hrs, larvae L3    51 Zinc 4.5 mM 48 hrs, 4-day adult    52 Ethanol 2.5% 3 hrs, larvae L3    146 Ethanol 5% 3 hrs, larvae L3    100 Ethanol 10% 3 hrs, larvae L3    103 Caffeine 1.5 mg/ml 4 hrs, larvae L3    52 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    109 Caffeine 25 mg/ml 48 hrs, 4-day adult    53 Paraquat 5 mM 48 hrs, 4-day adult    120 Paraquat 10 mM 48 hrs, 4-day adult    109 Rotenone 2 μg 12 hrs, larvae L3    138 Rotenone 8 μg 12 hrs, larvae L3    125 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (57) cold shock, 4-day adult  (39) heat shock, 4-day adult  (106) Cadmium 50 mM 6 hrs, larvae L3  (93) Cadmium 50 mM 12 hrs, larvae L3  (94) Cadmium 50 mM 48 hrs, 4-day adult  (108) Cadmium 100 mM 48 hrs, 4-day adult  (101) Copper 0.5 mM 12 hrs, larvae L3  (79) Copper 15 mM 48 hrs, 4-day adult  (53) Zinc 5 mM 12 hrs, larvae L3  (51) Zinc 4.5 mM 48 hrs, 4-day adult  (52) Ethanol 2.5% 3 hrs, larvae L3  (146) Ethanol 5% 3 hrs, larvae L3  (100) Ethanol 10% 3 hrs, larvae L3  (103) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (52) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (109) Caffeine 25 mg/ml 48 hrs, 4-day adult  (53) Paraquat 5 mM 48 hrs, 4-day adult  (120) Paraquat 10 mM 48 hrs, 4-day adult  (109) Rotenone 2 μg 12 hrs, larvae L3  (138) Rotenone 8 μg 12 hrs, larvae L3  (125) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    57 cold shock, 4-day adult    39 heat shock, 4-day adult  106 Cadmium 50 mM 6 hrs, larvae L3    93 Cadmium 50 mM 12 hrs, larvae L3    94 Cadmium 50 mM 48 hrs, 4-day adult  108 Cadmium 100 mM 48 hrs, 4-day adult  101 Copper 0.5 mM 12 hrs, larvae L3    79 Copper 15 mM 48 hrs, 4-day adult    53 Zinc 5 mM 12 hrs, larvae L3    51 Zinc 4.5 mM 48 hrs, 4-day adult    52 Ethanol 2.5% 3 hrs, larvae L3  (146) Ethanol 5% 3 hrs, larvae L3    100 Ethanol 10% 3 hrs, larvae L3  103 Caffeine 1.5 mg/ml 4 hrs, larvae L3    52 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  109 Caffeine 25 mg/ml 48 hrs, 4-day adult    53 Paraquat 5 mM 48 hrs, 4-day adult  120 Paraquat 10 mM 48 hrs, 4-day adult  109 Rotenone 2 μg 12 hrs, larvae L3  138 Rotenone 8 μg 12 hrs, larvae L3  125 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    57 cold shock, 4-day adult    39 heat shock, 4-day adult    106 Cadmium 50 mM 6 hrs, larvae L3    93 Cadmium 50 mM 12 hrs, larvae L3    94 Cadmium 50 mM 48 hrs, 4-day adult    108 Cadmium 100 mM 48 hrs, 4-day adult    101 Copper 0.5 mM 12 hrs, larvae L3    79 Copper 15 mM 48 hrs, 4-day adult    53 Zinc 5 mM 12 hrs, larvae L3    51 Zinc 4.5 mM 48 hrs, 4-day adult    52 Ethanol 2.5% 3 hrs, larvae L3    146 Ethanol 5% 3 hrs, larvae L3    100 Ethanol 10% 3 hrs, larvae L3    103 Caffeine 1.5 mg/ml 4 hrs, larvae L3    52 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    109 Caffeine 25 mg/ml 48 hrs, 4-day adult    53 Paraquat 5 mM 48 hrs, 4-day adult    120 Paraquat 10 mM 48 hrs, 4-day adult    109 Rotenone 2 μg 12 hrs, larvae L3    138 Rotenone 8 μg 12 hrs, larvae L3    125 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_19 mE1_20_mRNA_expression_cluster_02
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027359 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1728-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 Tim8GD13633 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Tim8 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Tim8 Class Mutagen Stocks Known lesion Tim8GD13633 in vitro construct - RNAi in vitro construct - regulatory fusion 4 Yes Tim8JF01533 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Tim8KK108530 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD13633} NA P{KK108530} NA P{TRiP.JF01533} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
P-P-bond-hydrolysis-driven protein transmembrane transporter activity inferred from sequence or structural similarity (Swiss-Prot Project Members, 2000.10.1) inferred from sequence or structural similarity with UniProtKB:O60220 AND inferred from sequence or structural similarity with UniProt:Q9Y5J9 (Sardiello et al., 2003.6.11)
Biological Process
CV term Evidence References
protein targeting to mitochondrion inferred from sequence or structural similarity with UniProtKB:O60220 AND inferred from sequence or structural similarity with UniProt:Q9Y5J9 (Sardiello et al., 2003.6.11) protein transport inferred from sequence or structural similarity (Swiss-Prot Project Members, 2000.10.1)
Cellular Component
CV term Evidence References
mitochondrial inner membrane presequence translocase complex inferred from sequence or structural similarity (Swiss-Prot Project Members, 2000.10.1) inferred from sequence or structural similarity with UniProtKB:O60220 AND inferred from sequence or structural similarity with UniProt:Q9Y5J9 (Sardiello et al., 2003.6.11) non-traceable author statement (Bauer, 1999.4.12)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
Tim8 - 4EHP anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - Arc1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - CG10077 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - CG11095 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Tim8 - CG11251 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - CG13983 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Tim8 - CG34132 experimental knowledge based (Guruharsha et al., 2011) Tim8 - CG43444 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - CG5746 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - CG7033 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - CG7049 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - CG8336 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - Cg25C anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - Chc anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - Oscillin experimental knowledge based (Guruharsha et al., 2011) Tim8 - Socs44A anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - Treh anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - al anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - elB anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - fd59A experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Tim8 - gish anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - kni anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - pio anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - snama anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Tim8 - vkg anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Tim8 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 58493 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0027359 DroID - A comprehensive database of gene and protein interactions. • FBgn0027359 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32081
Orthologs
OrthoDB Orthologs (44) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG670V43 Dipteran inclusive ortholog search EOG6NCMPB Insect inclusive ortholog search EOG62Z3N6 Arthropod inclusive ortholog search EOG6280JM Metazoa inclusive ortholog search EOG6S52C1
Orthologs in Drosophila Species (EOG670V43)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Tim8     Drosophila sechellia   Dsec\GM11476 Y   Drosophila erecta   Dere\GG18412 Y   Drosophila yakuba   Dyak\GE15929 Y   Drosophila ananassae   Dana\GF19075 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA14436 Y   Drosophila persimilis   Dper\GL14853 Y   Drosophila willistoni   Dwil\GK25334 Y   Drosophila virilis   Dvir\GJ15242 Y   Drosophila mojavensis   Dmoj\GI15714 Y   Drosophila grimshawi   Dgri\GH12183 Y
Orthologs in non-Drosophila Dipterans (EOG6NCMPB)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL000941   Anopheles gambiae Malaria mosquito  Agam\AGAP010606   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ018053   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ018054
Orthologs in non-Dipteran Insects (EOG62Z3N6)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\Tim8   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG012174   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH23391   Atta cephalotes Leafcutter ant  Acep\ACEP25913   Camponotus floridanus Florida carpenter ant  Cflo\CFLO16752   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL10697   Linepithema humile Argentine ant  Lhum\LH11444   Pogonomyrmex barbatus Red harvester ant  Pbar\PB22076   Acyrthosiphon pisum Pea aphid  Apim\ACYPI008610   Bombyx mori Silkmoth  Bmor\BGIBMGA014607   Pediculus humanus Human body louse  Phum\PHUM206070   Tribolium castaneum Red flour beetle  Tcas\GLEAN_07570
Orthologs in non-Insect Arthropods (EOG6280JM)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_58280   Ixodes scapularis Deer tick  Isca\ISCW010274
Orthologs in non-Arthropod Metazoa (EOG6S52C1)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\tim-8   Danio rerio Zebrafish  Drer\timm8a   Danio rerio Zebrafish  Drer\timm8b   Xenopus tropicalis Western clawed frog  Xtro\timm8b   Gallus gallus Domestic chicken  Ggal\TIMM8A   Mus musculus House mouse  Mmus\Timm8a1   Mus musculus House mouse  Mmus\Timm8a1   Mus musculus House mouse  Mmus\Timm8b   Mus musculus House mouse  Mmus\Timm8a2   Rattus norvegicus Norway rat  Rnor\Timm8a1   Rattus norvegicus Norway rat  Rnor\Timm8b   Rattus norvegicus Norway rat  Rnor\Timm8a2   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000011226   Homo sapiens Human  Hsap\TIMM8A   Homo sapiens Human  Hsap\TIMM8B
Human Orthologs (2)
Gene OMIM HGNC Hsap\TIMM8A     Hsap\TIMM8B
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD17019 Drosophila sechellia Dsec\GM11476 Drosophila erecta Dere\GG18412 Drosophila yakuba Dyak\GE15929 Drosophila ananassae Dana\GF19075 Drosophila pseudoobscura pseudoobscura Dpse\GA14436 Drosophila persimilis Dper\GL14853 Drosophila willistoni Dwil\GK25334 Drosophila virilis Dvir\GJ15242 Drosophila mojavensis Dmoj\GI15714 Drosophila grimshawi Dgri\GH12183
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	31082 y1 v1; P{TRiP.JF01533}attP2
VDRC	v101349 P{KK108530}VIE-260B v40331 w1118; P{GD13633}v40331 v40332 w1118; P{GD13633}v40332 v28805 w1118; P{GD13633}v28805/TM3 v29583 w1118; P{GD13633}v29583/TM3
Genomic Clones ( 2 )
	BACR07P15 BACR28L07 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 30 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	SD06593
Other clones	DPiM_SD06593
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT05102 GM25093
Other clones	61713 72124 72822 99292 bs02b09 bs17d07 CK01.3D.B8 CK01.24D.D7 CK01.40A.D8 CK01.51A.D9 CK01.95A.D12 CK01.95B.E4 CK01.123D.H5 Dmel_dig_018616_0616_3498 EK063213 EK074036 EK074150 EK098703 EK185052 EK200423 EK201356 FGC012B03 FGC029G02 FGH102F02 FGM210C12 FGM219B01
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0027359 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32081
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Tim8 CG1728 (Zhong, 1999.11)
Source for database merge of	Source for merge of: Tim8 BcDNA:SD06593 (FlyBase, 1996-)
Additional comments	Source for merge of Tim8 BcDNA:SD06593 was a shared cDNA (date:030728). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132485 RefSeq (Proteins) • NP_572713 DDBJ / EMBL / GenBank • AAD39162 AAF48036 AAM50018 AF142424 AI534085 AI944577 AI945835 AY118649 Entrez Gene - A searchable database of RefSeq genes. • 32081 UniProtKB/Swiss-Prot • Q9Y1A3
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Tim10/DDP family zinc finger (IPR004217) MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins • MTDROME01728
Linkouts
	BioGRID - A database of protein and genetic interactions • 58493 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0027359 DroID - A comprehensive database of gene and protein interactions. • FBgn0027359 DRSC - Results from RNAi screens. • FBgn0027359 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027359 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1728-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0027359 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32081 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32081 modMine - Data generated by the modENCODE project. • FBgn0027359
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	BcDNA:SD06593   CG1728 (Keleman et al., 2009.8.5, Ni et al., 2008) Tim8 (Mack et al., 2006, McGraw et al., 2008)
Name Synonym	Tim8
Secondary FlyBase IDs
	FBgn0062891
References ( 22 )
Generate a list of	All references relating to this gene ( 22 )
List References by type	Research paper  ( 4 ) Supplementary material  ( 6 ) Personal communication to FlyBase  ( 7 ) FlyBase analysis  ( 1 ) Curated genome annotation  ( 2 ) DNA/RNA sequence record  ( 1 ) Protein sequence record  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...