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Gene Dmel\CG8378

General Information
Symbol	Dmel\CG8378	Species	D. melanogaster
Name		Annotation symbol	CG8378
Feature type	protein_coding_gene	FlyBase ID	FBgn0027495
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	48E2-48E2	Sequence location	2R:8,028,136..8,030,777 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG8378 (FBgn0027495). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: histone deacetylase binding. Based on sequence similarity, it is predicted to be involved in the biological process: negative regulation of gene expression. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: SET domain; Tetratricopeptide-like helical; Zinc finger, MYND-type. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval salivary gland, adult ovary, adult male reproductive system. Comments on Affy2 ProbeSet: ProbeSet 1641673_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG8378. Gene sequence location is 2R:8028136..8030777.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 48E2-48E2   Limits computationally determined from genome sequence between P{lacW}jebk05644 and P{PZ}SmD302833
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG8378 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG8378-RA FBtr0087983  NM_136886   2474   573
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG8378-PA   FBpp0087091   66.5   573   6.17     NP_610730   AAF58578
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • SET domain (IPR001214) Zinc finger, MYND-type (IPR002893) Tetratricopeptide-like helical (IPR011990)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA391476   AA391909   AA392226   AA440862   AA801810   AA803980   AA949013   AA949850   AA949894   AA978881   AE013599 AAF58578   AF145692 AAD38667   AI389469   AI516523   AI519638   AI520125   AI520238   AI532135   AI533567   AI534646   AI542082   AI544045   AI546222   AI546619   AQ073638   BE976295   BF498643   BG639900   BI169124   BI213722   BI215245   BI229161   BI358538   BI368806   BI371611   BI372741   BI372816   BI373432   BI375443   BI482875   BI484203   BI485548   BI577186   BI592259   BI610224   BI635103   BI639013   BZ286358   CO190353   CO267342   CO287906   CO296821   CO299624   CO300210   CO304260   CO322065   CO324550   CO330327   CO332278   EC067428   EC068910   EC070090   EC073130   EC083532   EC200846   EC213938   EC219078   EC223413   EC224840   EC234618   EC237114   EC239737   EC245598   EV580920   GH758468   GH817945   GH830475   GH830877   GH837091   GH837691   GH890119   GH914913   GH925217
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q7KMH5
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
cytoplasm inferred from direct assay (Thompson and Travers, 2008) nucleus inferred from direct assay (Thompson and Travers, 2008)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval salivary gland, adult ovary, adult male reproductive system. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    137.475 Larval Midgut    41 Larval Hindgut    53.3 Larval Malpighian Tubules    47.1 Larval Fat Body    54.3 Larval Salivary Gland    107.7 Larval Trachea    17.525 Larval Carcass    68.925 Adult Head    43.8 Adult Eye    5 Adult Brain    99.3 Adult Thoracic-Abdominal Ganglion    61.3 Adult Crop    55.8 Adult Midgut    40.7 Adult Hindgut    52.8 Adult Malpighian Tubules    32.1 Adult Fat Body    37.2 Adult Salivary Gland    81.2 Adult Heart    9.625 Adult VirginFemale Spermatheca    18.2 Adult InseminatedFemale Spermatheca    18.8 Adult Ovary    160.6 Adult Testis    259.4 Adult Male Accessory Gland    166.9 Adult Carcass    45.6 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    137.475 Larval Midgut    41 Larval Hindgut    53.3 Larval Malpighian Tubules    47.1 Larval Fat Body    54.3 Larval Salivary Gland    107.7 Larval Trachea    17.525 Larval Carcass    68.925 Adult Head    43.8 Adult Eye    5 Adult Brain    99.3 Adult Thoracic-Abdominal Ganglion    61.3 Adult Crop    55.8 Adult Midgut    40.7 Adult Hindgut    52.8 Adult Malpighian Tubules    32.1 Adult Fat Body    37.2 Adult Salivary Gland    81.2 Adult Heart    9.625 Adult VirginFemale Spermatheca    18.2 Adult InseminatedFemale Spermatheca    18.8 Adult Ovary    160.6 Adult Testis    259.4 Adult Male Accessory Gland    166.9 Adult Carcass    45.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    137.475 Larval Midgut    41 Larval Hindgut    53.3 Larval Malpighian Tubules    47.1 Larval Fat Body    54.3 Larval Salivary Gland    107.7 Larval Trachea    17.525 Larval Carcass    68.925 Adult Head    43.8 Adult Eye    5 Adult Brain    99.3 Adult Thoracic-Abdominal Ganglion    61.3 Adult Crop    55.8 Adult Midgut    40.7 Adult Hindgut    52.8 Adult Malpighian Tubules    32.1 Adult Fat Body    37.2 Adult Salivary Gland    81.2 Adult Heart    9.625 Adult VirginFemale Spermatheca    18.2 Adult InseminatedFemale Spermatheca    18.8 Adult Ovary    160.6 Adult Testis    259.4 Adult Male Accessory Gland    166.9 Adult Carcass    45.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    137.475 Larval Midgut    41 Larval Hindgut    53.3 Larval Malpighian Tubules    47.1 Larval Fat Body    54.3 Larval Salivary Gland    107.7 Larval Trachea    17.525 Larval Carcass    68.925 Adult Head    43.8 Adult Eye    5 Adult Brain    99.3 Adult Thoracic-Abdominal Ganglion    61.3 Adult Crop    55.8 Adult Midgut    40.7 Adult Hindgut    52.8 Adult Malpighian Tubules    32.1 Adult Fat Body    37.2 Adult Salivary Gland    81.2 Adult Heart    9.625 Adult VirginFemale Spermatheca    18.2 Adult InseminatedFemale Spermatheca    18.8 Adult Ovary    160.6 Adult Testis    259.4 Adult Male Accessory Gland    166.9 Adult Carcass    45.6 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    137.475 Larval Midgut    41 Larval Hindgut    53.3 Larval Malpighian Tubules    47.1 Larval Fat Body    54.3 Larval Salivary Gland    107.7 Larval Trachea    17.525 Larval Carcass    68.925 Adult Head    43.8 Adult Eye    5 Adult Brain    99.3 Adult Thoracic-Abdominal Ganglion    61.3 Adult Crop    55.8 Adult Midgut    40.7 Adult Hindgut    52.8 Adult Malpighian Tubules    32.1 Adult Fat Body    37.2 Adult Salivary Gland    81.2 Adult Heart    9.625 Adult VirginFemale Spermatheca    18.2 Adult InseminatedFemale Spermatheca    18.8 Adult Ovary    160.6 Adult Testis    259.4 Adult Male Accessory Gland    166.9 Adult Carcass    45.6 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    137.475 Larval Midgut    41 Larval Hindgut    53.3 Larval Malpighian Tubules    47.1 Larval Fat Body    54.3 Larval Salivary Gland    107.7 Larval Trachea    17.525 Larval Carcass    68.925 Adult Head    43.8 Adult Eye    5 Adult Brain    99.3 Adult Thoracic-Abdominal Ganglion    61.3 Adult Crop    55.8 Adult Midgut    40.7 Adult Hindgut    52.8 Adult Malpighian Tubules    32.1 Adult Fat Body    37.2 Adult Salivary Gland    81.2 Adult Heart    9.625 Adult VirginFemale Spermatheca    18.2 Adult InseminatedFemale Spermatheca    18.8 Adult Ovary    160.6 Adult Testis    259.4 Adult Male Accessory Gland    166.9 Adult Carcass    45.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    137.475 Larval Midgut    41 Larval Hindgut    53.3 Larval Malpighian Tubules    47.1 Larval Fat Body    54.3 Larval Salivary Gland    107.7 Larval Trachea    17.525 Larval Carcass    68.925 Adult Head    43.8 Adult Eye    5 Adult Brain    99.3 Adult Thoracic-Abdominal Ganglion    61.3 Adult Crop    55.8 Adult Midgut    40.7 Adult Hindgut    52.8 Adult Malpighian Tubules    32.1 Adult Fat Body    37.2 Adult Salivary Gland    81.2 Adult Heart    9.625 Adult VirginFemale Spermatheca    18.2 Adult InseminatedFemale Spermatheca    18.8 Adult Ovary    160.6 Adult Testis    259.4 Adult Male Accessory Gland    166.9 Adult Carcass    45.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    137.475 Larval Midgut    41 Larval Hindgut    53.3 Larval Malpighian Tubules    47.1 Larval Fat Body    54.3 Larval Salivary Gland    107.7 Larval Trachea    17.525 Larval Carcass    68.925 Adult Head    43.8 Adult Eye    5 Adult Brain    99.3 Adult Thoracic-Abdominal Ganglion    61.3 Adult Crop    55.8 Adult Midgut    40.7 Adult Hindgut    52.8 Adult Malpighian Tubules    32.1 Adult Fat Body    37.2 Adult Salivary Gland    81.2 Adult Heart    9.625 Adult VirginFemale Spermatheca    18.2 Adult InseminatedFemale Spermatheca    18.8 Adult Ovary    160.6 Adult Testis    259.4 Adult Male Accessory Gland    166.9 Adult Carcass    45.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    43.8   NA  Eye    5   NA  Brain    99.3   137.475  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    61.3   NA  Crop    55.8   41  Midgut    40.7   53.3  Hindgut    52.8   47.1  Malpighian Tubules    32.1   54.3  Fat Body    37.2   107.7  Salivary Gland    81.2   NA  Heart    9.625   17.525  Trachea    NA   NA  VirginFemale Spermatheca    no informative data   NA  InseminatedFemale Spermatheca    18.8   NA  Ovary    160.6   NA  Testis    259.4   NA  Male Accessory Gland    166.9   68.925  Carcass    45.6 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    41 central nervous system, larvae L3    33 central nervous system, pupae P8    16 head, virgin 1-day female    7 head, virgin 4-day female    6 head, virgin 20-day female    7 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    4 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8    21 carcass, larvae L3 wandering    25 carcass, 1-day adult    6 carcass, 4-day adult    8 carcass, 20-day adult    9 ovary, virgin 4-day female    60 ovary, mated 4-day female    54 testis, mated 4-day male    50 accessory gland, mated 4-day male    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (41) central nervous system, larvae L3  (33) central nervous system, pupae P8    16 head, virgin 1-day female    7 head, virgin 4-day female    6 head, virgin 20-day female    7 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    4 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8    21 carcass, larvae L3 wandering    25 carcass, 1-day adult    6 carcass, 4-day adult    8 carcass, 20-day adult    9 ovary, virgin 4-day female  (60) ovary, mated 4-day female  (54) testis, mated 4-day male  (50) accessory gland, mated 4-day male    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    41 central nervous system, larvae L3    33 central nervous system, pupae P8    16 head, virgin 1-day female    7 head, virgin 4-day female    6 head, virgin 20-day female    7 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    4 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8    21 carcass, larvae L3 wandering    25 carcass, 1-day adult    6 carcass, 4-day adult    8 carcass, 20-day adult    9 ovary, virgin 4-day female    60 ovary, mated 4-day female    54 testis, mated 4-day male    50 accessory gland, mated 4-day male    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    41 central nervous system, larvae L3    33 central nervous system, pupae P8    16 head, virgin 1-day female    7 head, virgin 4-day female    6 head, virgin 20-day female    7 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    4 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8    21 carcass, larvae L3 wandering    25 carcass, 1-day adult    6 carcass, 4-day adult    8 carcass, 20-day adult    9 ovary, virgin 4-day female    60 ovary, mated 4-day female    54 testis, mated 4-day male    50 accessory gland, mated 4-day male    15 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    41 central nervous system, larvae L3    33 central nervous system, pupae P8    16 head, virgin 1-day female    7 head, virgin 4-day female    6 head, virgin 20-day female    7 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    4 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8    21 carcass, larvae L3 wandering    25 carcass, 1-day adult    6 carcass, 4-day adult    8 carcass, 20-day adult    9 ovary, virgin 4-day female    60 ovary, mated 4-day female    54 testis, mated 4-day male    50 accessory gland, mated 4-day male    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (41) central nervous system, larvae L3  (33) central nervous system, pupae P8    16 head, virgin 1-day female    7 head, virgin 4-day female    6 head, virgin 20-day female    7 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    4 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8    21 carcass, larvae L3 wandering    25 carcass, 1-day adult    6 carcass, 4-day adult    8 carcass, 20-day adult    9 ovary, virgin 4-day female  (60) ovary, mated 4-day female  (54) testis, mated 4-day male  (50) accessory gland, mated 4-day male    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    41 central nervous system, larvae L3    33 central nervous system, pupae P8    16 head, virgin 1-day female    7 head, virgin 4-day female    6 head, virgin 20-day female    7 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    4 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8    21 carcass, larvae L3 wandering    25 carcass, 1-day adult    6 carcass, 4-day adult    8 carcass, 20-day adult    9 ovary, virgin 4-day female    60 ovary, mated 4-day female    54 testis, mated 4-day male    50 accessory gland, mated 4-day male    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    41 central nervous system, larvae L3    33 central nervous system, pupae P8    16 head, virgin 1-day female    7 head, virgin 4-day female    6 head, virgin 20-day female    7 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    10 head, mated 4-day male    8 head, mated 20-day male    12 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    4 digestive system, 4-day adult    8 digestive system, 20-day adult    7 fat body, larvae L3 wandering    4 fat body, white prepupae    12 fat body, pupae P8    21 carcass, larvae L3 wandering    25 carcass, 1-day adult    6 carcass, 4-day adult    8 carcass, 20-day adult    9 ovary, virgin 4-day female    60 ovary, mated 4-day female    54 testis, mated 4-day male    50 accessory gland, mated 4-day male    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    74 embryo 02-04hr    99 embryo 04-06hr    49 embryo 06-08hr    49 embryo 08-10hr    53 embryo 10-12hr    44 embryo 12-14hr    36 embryo 14-16hr    39 embryo 16-18hr    28 embryo 18-20hr    15 embryo 20-22hr    22 embryo 22-24hr    22 larva L1    21 larva L2    15 larva L3 12hr old    13 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    21 white prepupae new    22 white prepupae 12hr    27 white prepupae 24hr    33 pupae 2d postWPP    27 pupae 3d postWPP    21 pupae 4d postWPP    15 adult male 01day    20 adult male 05day    28 adult male 30day    32 adult female 01day    30 adult female 05day    44 adult female 30day    43 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (74) embryo 02-04hr  (99) embryo 04-06hr  (49) embryo 06-08hr  (49) embryo 08-10hr  (53) embryo 10-12hr  (44) embryo 12-14hr  (36) embryo 14-16hr  (39) embryo 16-18hr  (28) embryo 18-20hr    15 embryo 20-22hr    22 embryo 22-24hr    22 larva L1    21 larva L2    15 larva L3 12hr old    13 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    21 white prepupae new    22 white prepupae 12hr  (27) white prepupae 24hr  (33) pupae 2d postWPP  (27) pupae 3d postWPP    21 pupae 4d postWPP    15 adult male 01day    20 adult male 05day  (28) adult male 30day  (32) adult female 01day  (30) adult female 05day  (44) adult female 30day  (43) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    74 embryo 02-04hr    99 embryo 04-06hr    49 embryo 06-08hr    49 embryo 08-10hr    53 embryo 10-12hr    44 embryo 12-14hr    36 embryo 14-16hr    39 embryo 16-18hr    28 embryo 18-20hr    15 embryo 20-22hr    22 embryo 22-24hr    22 larva L1    21 larva L2    15 larva L3 12hr old    13 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    21 white prepupae new    22 white prepupae 12hr    27 white prepupae 24hr    33 pupae 2d postWPP    27 pupae 3d postWPP    21 pupae 4d postWPP    15 adult male 01day    20 adult male 05day    28 adult male 30day    32 adult female 01day    30 adult female 05day    44 adult female 30day    43 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    74 embryo 02-04hr    99 embryo 04-06hr    49 embryo 06-08hr    49 embryo 08-10hr    53 embryo 10-12hr    44 embryo 12-14hr    36 embryo 14-16hr    39 embryo 16-18hr    28 embryo 18-20hr    15 embryo 20-22hr    22 embryo 22-24hr    22 larva L1    21 larva L2    15 larva L3 12hr old    13 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    21 white prepupae new    22 white prepupae 12hr    27 white prepupae 24hr    33 pupae 2d postWPP    27 pupae 3d postWPP    21 pupae 4d postWPP    15 adult male 01day    20 adult male 05day    28 adult male 30day    32 adult female 01day    30 adult female 05day    44 adult female 30day    43 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    74 embryo 02-04hr    99 embryo 04-06hr    49 embryo 06-08hr    49 embryo 08-10hr    53 embryo 10-12hr    44 embryo 12-14hr    36 embryo 14-16hr    39 embryo 16-18hr    28 embryo 18-20hr    15 embryo 20-22hr    22 embryo 22-24hr    22 larva L1    21 larva L2    15 larva L3 12hr old    13 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    21 white prepupae new    22 white prepupae 12hr    27 white prepupae 24hr    33 pupae 2d postWPP    27 pupae 3d postWPP    21 pupae 4d postWPP    15 adult male 01day    20 adult male 05day    28 adult male 30day    32 adult female 01day    30 adult female 05day    44 adult female 30day    43 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (74) embryo 02-04hr  (99) embryo 04-06hr  (49) embryo 06-08hr  (49) embryo 08-10hr  (53) embryo 10-12hr  (44) embryo 12-14hr  (36) embryo 14-16hr  (39) embryo 16-18hr  28 embryo 18-20hr    15 embryo 20-22hr    22 embryo 22-24hr    22 larva L1    21 larva L2    15 larva L3 12hr old    13 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    21 white prepupae new    22 white prepupae 12hr  27 white prepupae 24hr  (33) pupae 2d postWPP  27 pupae 3d postWPP    21 pupae 4d postWPP    15 adult male 01day    20 adult male 05day  28 adult male 30day  32 adult female 01day  30 adult female 05day  (44) adult female 30day  (43) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    74 embryo 02-04hr    99 embryo 04-06hr    49 embryo 06-08hr    49 embryo 08-10hr    53 embryo 10-12hr    44 embryo 12-14hr    36 embryo 14-16hr    39 embryo 16-18hr    28 embryo 18-20hr    15 embryo 20-22hr    22 embryo 22-24hr    22 larva L1    21 larva L2    15 larva L3 12hr old    13 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    21 white prepupae new    22 white prepupae 12hr    27 white prepupae 24hr    33 pupae 2d postWPP    27 pupae 3d postWPP    21 pupae 4d postWPP    15 adult male 01day    20 adult male 05day    28 adult male 30day    32 adult female 01day    30 adult female 05day    44 adult female 30day    43 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    74 embryo 02-04hr    99 embryo 04-06hr    49 embryo 06-08hr    49 embryo 08-10hr    53 embryo 10-12hr    44 embryo 12-14hr    36 embryo 14-16hr    39 embryo 16-18hr    28 embryo 18-20hr    15 embryo 20-22hr    22 embryo 22-24hr    22 larva L1    21 larva L2    15 larva L3 12hr old    13 larva L3 puffstage 1-2    13 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    21 white prepupae new    22 white prepupae 12hr    27 white prepupae 24hr    33 pupae 2d postWPP    27 pupae 3d postWPP    21 pupae 4d postWPP    15 adult male 01day    20 adult male 05day    28 adult male 30day    32 adult female 01day    30 adult female 05day    44 adult female 30day    43 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    46 Schneider line 2 Sg4    24 embryonic 1182-4H    33 embryonic GM2    29 embryonic Kc167    29 embryonic S1    44 embryonic S3    30 leg disc CME L1    32 wing disc CME-W2    26 wing disc ML-DmD8    33 wing disc ML-DmD9    40 wing disc ML-DmD16-c3    33 wing disc ML-DmD21    40 wing disc ML-DmD32    23 haltere disc ML-DmD17-c3    42 eye-antennal disc ML-DmD11    44 antennal disc ML-DmD20-c5    31 mixed discs ML-DmD4-c1    32 CNS ML-DmBG1-c1    32 CNS ML-DmBG2-c2    43 tumorous blood cells mbn2    14 ovary fGS/OSS    28 ovary OSC    38 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (46) Schneider line 2 Sg4    24 embryonic 1182-4H  (33) embryonic GM2  (29) embryonic Kc167  (29) embryonic S1  (44) embryonic S3  (30) leg disc CME L1  (32) wing disc CME-W2  26 wing disc ML-DmD8  (33) wing disc ML-DmD9  (40) wing disc ML-DmD16-c3  (33) wing disc ML-DmD21  (40) wing disc ML-DmD32    23 haltere disc ML-DmD17-c3  (42) eye-antennal disc ML-DmD11  (44) antennal disc ML-DmD20-c5  (31) mixed discs ML-DmD4-c1  (32) CNS ML-DmBG1-c1  (32) CNS ML-DmBG2-c2  (43) tumorous blood cells mbn2    14 ovary fGS/OSS  (28) ovary OSC  (38) ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    46 Schneider line 2 Sg4    24 embryonic 1182-4H    33 embryonic GM2    29 embryonic Kc167    29 embryonic S1    44 embryonic S3    30 leg disc CME L1    32 wing disc CME-W2    26 wing disc ML-DmD8    33 wing disc ML-DmD9    40 wing disc ML-DmD16-c3    33 wing disc ML-DmD21    40 wing disc ML-DmD32    23 haltere disc ML-DmD17-c3    42 eye-antennal disc ML-DmD11    44 antennal disc ML-DmD20-c5    31 mixed discs ML-DmD4-c1    32 CNS ML-DmBG1-c1    32 CNS ML-DmBG2-c2    43 tumorous blood cells mbn2    14 ovary fGS/OSS    28 ovary OSC    38 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    46 Schneider line 2 Sg4    24 embryonic 1182-4H    33 embryonic GM2    29 embryonic Kc167    29 embryonic S1    44 embryonic S3    30 leg disc CME L1    32 wing disc CME-W2    26 wing disc ML-DmD8    33 wing disc ML-DmD9    40 wing disc ML-DmD16-c3    33 wing disc ML-DmD21    40 wing disc ML-DmD32    23 haltere disc ML-DmD17-c3    42 eye-antennal disc ML-DmD11    44 antennal disc ML-DmD20-c5    31 mixed discs ML-DmD4-c1    32 CNS ML-DmBG1-c1    32 CNS ML-DmBG2-c2    43 tumorous blood cells mbn2    14 ovary fGS/OSS    28 ovary OSC    38 ovary OSS    13 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    46 Schneider line 2 Sg4    24 embryonic 1182-4H    33 embryonic GM2    29 embryonic Kc167    29 embryonic S1    44 embryonic S3    30 leg disc CME L1    32 wing disc CME-W2    26 wing disc ML-DmD8    33 wing disc ML-DmD9    40 wing disc ML-DmD16-c3    33 wing disc ML-DmD21    40 wing disc ML-DmD32    23 haltere disc ML-DmD17-c3    42 eye-antennal disc ML-DmD11    44 antennal disc ML-DmD20-c5    31 mixed discs ML-DmD4-c1    32 CNS ML-DmBG1-c1    32 CNS ML-DmBG2-c2    43 tumorous blood cells mbn2    14 ovary fGS/OSS    28 ovary OSC    38 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (46) Schneider line 2 Sg4    24 embryonic 1182-4H  (33) embryonic GM2  29 embryonic Kc167  29 embryonic S1  (44) embryonic S3  30 leg disc CME L1  32 wing disc CME-W2  26 wing disc ML-DmD8  (33) wing disc ML-DmD9  (40) wing disc ML-DmD16-c3  (33) wing disc ML-DmD21  (40) wing disc ML-DmD32    23 haltere disc ML-DmD17-c3  (42) eye-antennal disc ML-DmD11  (44) antennal disc ML-DmD20-c5  31 mixed discs ML-DmD4-c1  32 CNS ML-DmBG1-c1  32 CNS ML-DmBG2-c2  (43) tumorous blood cells mbn2    14 ovary fGS/OSS  28 ovary OSC  (38) ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    46 Schneider line 2 Sg4    24 embryonic 1182-4H    33 embryonic GM2    29 embryonic Kc167    29 embryonic S1    44 embryonic S3    30 leg disc CME L1    32 wing disc CME-W2    26 wing disc ML-DmD8    33 wing disc ML-DmD9    40 wing disc ML-DmD16-c3    33 wing disc ML-DmD21    40 wing disc ML-DmD32    23 haltere disc ML-DmD17-c3    42 eye-antennal disc ML-DmD11    44 antennal disc ML-DmD20-c5    31 mixed discs ML-DmD4-c1    32 CNS ML-DmBG1-c1    32 CNS ML-DmBG2-c2    43 tumorous blood cells mbn2    14 ovary fGS/OSS    28 ovary OSC    38 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    46 Schneider line 2 Sg4    24 embryonic 1182-4H    33 embryonic GM2    29 embryonic Kc167    29 embryonic S1    44 embryonic S3    30 leg disc CME L1    32 wing disc CME-W2    26 wing disc ML-DmD8    33 wing disc ML-DmD9    40 wing disc ML-DmD16-c3    33 wing disc ML-DmD21    40 wing disc ML-DmD32    23 haltere disc ML-DmD17-c3    42 eye-antennal disc ML-DmD11    44 antennal disc ML-DmD20-c5    31 mixed discs ML-DmD4-c1    32 CNS ML-DmBG1-c1    32 CNS ML-DmBG2-c2    43 tumorous blood cells mbn2    14 ovary fGS/OSS    28 ovary OSC    38 ovary OSS    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    13 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    40 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    14 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    35 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    13 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult  (40) Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    14 Ethanol 2.5% 3 hrs, larvae L3  (37) Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (35) Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult  (32) Paraquat 10 mM 48 hrs, 4-day adult  (29) Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    13 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    40 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    14 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    35 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    13 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    40 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    14 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    35 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    13 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    40 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    14 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    35 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    13 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult  (40) Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    14 Ethanol 2.5% 3 hrs, larvae L3  (37) Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (35) Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult  32 Paraquat 10 mM 48 hrs, 4-day adult  29 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    13 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    40 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    14 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    35 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    13 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    12 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    40 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    9 Zinc 4.5 mM 48 hrs, 4-day adult    14 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    35 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_01 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027495 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8378-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG8378GD13908 Phenotype manifest in Allele
Classical Alleles ( 4 )
For All Classical Alleles Show
Allele of CG8378 Class Mutagen Stocks Known lesion CG8378e02998 1 -- CG8378EY00047 P-element activity 1 -- CG8378EY04267 P-element activity 1 -- CG8378EP2501 P-element activity 0 --
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG8378 Class Mutagen Stocks Known lesion CG8378GD13908 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD13908} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}CG8378EP2501 NA P{EPgy2}CG8378EY00047 NA P{EPgy2}CG8378EY04267 NA miscellaneous insertions PBac{RB}CG8378e02998 NA
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
cytoplasm inferred from direct assay (Thompson and Travers, 2008) nucleus inferred from direct assay (Thompson and Travers, 2008)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
histone deacetylase binding inferred from sequence or structural similarity with Smyd4 (Thompson and Travers, 2008) zinc ion binding inferred from electronic annotation with InterPro:IPR002893 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
negative regulation of gene expression inferred from sequence or structural similarity with Smyd4 (Thompson and Travers, 2008)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG8378 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 62081 DroID - A comprehensive database of gene and protein interactions. • FBgn0027495 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36299
Orthologs
OrthoDB Orthologs (82) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6TMRMN Dipteran inclusive ortholog search EOG6X3H8J Insect inclusive ortholog search EOG63JB0T Arthropod inclusive ortholog search EOG6PNVXZ Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6TMRMN)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG8378     Drosophila simulans   Dsim\GD10841 Y   Drosophila sechellia   Dsec\GM21333 Y   Drosophila erecta   Dere\GG20247 Y   Drosophila yakuba   Dyak\GE12406 Y   Drosophila ananassae   Dana\GF12292 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA21031 Y   Drosophila persimilis   Dper\GL16991 Y   Drosophila willistoni   Dwil\GK19653 Y   Drosophila virilis   Dvir\GJ20689 Y   Drosophila mojavensis   Dmoj\GI20970 Y   Drosophila grimshawi   Dgri\GH20862 Y
Orthologs in non-Drosophila Dipterans (EOG6X3H8J)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL003992   Anopheles gambiae Malaria mosquito  Agam\AGAP010931   Anopheles gambiae Malaria mosquito  Agam\AGAP000216   Anopheles gambiae Malaria mosquito  Agam\AGAP011267   Anopheles gambiae Malaria mosquito  Agam\AGAP011237   Anopheles gambiae Malaria mosquito  Agam\AGAP011232   Anopheles gambiae Malaria mosquito  Agam\AGAP011238   Anopheles gambiae Malaria mosquito  Agam\AGAP011270   Anopheles gambiae Malaria mosquito  Agam\AGAP012638   Anopheles gambiae Malaria mosquito  Agam\AGAP009448   Anopheles gambiae Malaria mosquito  Agam\AGAP011835   Anopheles gambiae Malaria mosquito  Agam\AGAP005253   Anopheles gambiae Malaria mosquito  Agam\AGAP011234   Anopheles gambiae Malaria mosquito  Agam\AGAP011257   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ006454   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ006452   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ006490   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ014620
Orthologs in non-Dipteran Insects (EOG63JB0T)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC726373   Apis mellifera Western honey bee  Amel\GB55158   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG003244   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG006968   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG008754   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG000997   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG008664   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG008794   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG018239   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG008714   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG005019   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG020695   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG008753   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG016498   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG000996   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH17118   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH19852   Atta cephalotes Leafcutter ant  Acep\ACEP16432   Atta cephalotes Leafcutter ant  Acep\ACEP12139   Camponotus floridanus Florida carpenter ant  Cflo\CFLO22515   Camponotus floridanus Florida carpenter ant  Cflo\CFLO21824   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL18764   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL16952   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL18765   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL18766   Linepithema humile Argentine ant  Lhum\LH24578   Linepithema humile Argentine ant  Lhum\LH15269   Pogonomyrmex barbatus Red harvester ant  Pbar\PB10512   Pogonomyrmex barbatus Red harvester ant  Pbar\PB22652   Pogonomyrmex barbatus Red harvester ant  Pbar\PB10508   Solenopsis invicta Red fire ant  Sinv\SINV13342   Solenopsis invicta Red fire ant  Sinv\SINV10621   Solenopsis invicta Red fire ant  Sinv\SINV23051   Acyrthosiphon pisum Pea aphid  Apim\ACYPI52471   Acyrthosiphon pisum Pea aphid  Apim\ACYPI55839   Acyrthosiphon pisum Pea aphid  Apim\ACYPI26757   Acyrthosiphon pisum Pea aphid  Apim\ACYPI23878   Acyrthosiphon pisum Pea aphid  Apim\ACYPI001574   Acyrthosiphon pisum Pea aphid  Apim\ACYPI52915   Acyrthosiphon pisum Pea aphid  Apim\ACYPI25513   Acyrthosiphon pisum Pea aphid  Apim\ACYPI33312   Acyrthosiphon pisum Pea aphid  Apim\ACYPI48770   Acyrthosiphon pisum Pea aphid  Apim\ACYPI33315   Acyrthosiphon pisum Pea aphid  Apim\ACYPI067675   Acyrthosiphon pisum Pea aphid  Apim\ACYPI065055   Bombyx mori Silkmoth  Bmor\BGIBMGA014048   Pediculus humanus Human body louse  Phum\PHUM126850   Tribolium castaneum Red flour beetle  Tcas\TC005320   Tribolium castaneum Red flour beetle  Tcas\TC005323   Tribolium castaneum Red flour beetle  Tcas\TC005322
Orthologs in non-Insect Arthropods (EOG6PNVXZ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\rac   Daphnia pulex Water flea  Dpux\JGI_V11_221129
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD10841 Drosophila sechellia Dsec\GM21333 Drosophila erecta Dere\GG20247 Drosophila yakuba Dyak\GE12406 Drosophila ananassae Dana\GF12292 Drosophila pseudoobscura pseudoobscura Dpse\GA21031 Drosophila persimilis Dper\GL16991 Drosophila willistoni Dwil\GK19653 Drosophila virilis Dvir\GJ20689 Drosophila mojavensis Dmoj\GI20970 Drosophila grimshawi Dgri\GH20862
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	15732 w1118; P{EPgy2}CG8378EY04267/CyO, P{sevRas1.V12}FK1 14804 y1 w67c23; CyO, P{EPgy2}CG8378EY00047/In(2LR)Gla
Harvard	- PBac{RB}CG8378e02998
VDRC	v40705 w1118; P{GD13908}v40705 v40706 w1118; P{GD13908}v40706
Genomic Clones ( 1 )
	BACR04E21 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 77 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD29892
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT13101 GH20650 GM12438 GM13062 LD10123 LD10836 LD15913 LD27746 LD28452 LD33065 LD39292 LD40138 LD40331 LD42417 LD46066 LD47737 RE10212 RE19202 RE21589 RE26884 RE45333 RE54846 RE58536 RE59795 RE59995 RE60713 RE63260 RE65672 RE67265 RE68904 RE70836 RH09906 RH15270 SD03512 SD05445 SD07575 SD08155 SD16343 SD21442
Other clones	12954 37570 50227 57157 61169 66177 81872 106148 191803 275400 bs49a11 CK01.25D.G1 CK01.84C.G9 CK01.90D.D1 Dmel_dig_015302_0602_3376 EK047902 EK067120 EK149521 EK175951 EK177623 EK187134 EK194217 EK215232 EK244218 EK294963 EK303017 LD11032 RP003199040 RP003233635 RP003361377 RP003363767 RP003373017 RP003376907 RP003477988 RP003480917 RP003571492 SD08094
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0027495 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36299
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_136886 RefSeq (Proteins) • NP_610730 DDBJ / EMBL / GenBank • AA949850 AAD38667 AAF58578 AF145692 AQ073638 BZ286358 Entrez Gene - A searchable database of RefSeq genes. • 36299 UniProtKB/TrEMBL • Q7KMH5
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • SET domain (IPR001214) Zinc finger, MYND-type (IPR002893) Tetratricopeptide-like helical (IPR011990)
Linkouts
	BioGRID - A database of protein and genetic interactions • 62081 DroID - A comprehensive database of gene and protein interactions. • FBgn0027495 DRSC - Results from RNAi screens. • FBgn0027495 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027495 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8378-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0027495 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36299 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 36299 modMine - Data generated by the modENCODE project. • FBgn0027495
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	BcDNA:LD29892 (Giot et al., 2003, ) CG8378 (Thompson and Travers, 2008)
Name Synonym
Secondary FlyBase IDs
References ( 11 )
Research paper	Thompson and Travers, 2008, PLoS ONE 3(8): e3008 A Drosophila Smyd4 homologue is a muscle-specific transcriptional modulator involved in development. [FBrf0205731]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]