General Information Symbol Dmel\ spd-2Species D. melanogaster Name spindle defective 2 Annotation symbol CG17286 Feature type protein_coding_gene FlyBase ID FBgn0027500 Gene Model Status Current Stock availability 3 publicly
available Also Known As DSPD-2, D-SPD2, spd2, DSpd2, Cep192 Genomic Location Chromosome (arm) 3L Recombination map Cytogenetic map 73A10-73A11 Sequence location 3L:16,584,307..16,588,114 [-]
Genomic Maps
Summary Information Automatically generated summary
See sections below for more information The gene
spindle defective 2 is referred to in FlyBase by the symbol
Dmel\spd-2 (CG17286, FBgn0027500). It is a protein_coding_gene from
Drosophila melanogaster . Its
molecular function is unknown. There is experimental evidence that it is involved in the
biological process : centrosome organization; astral microtubule organization; sperm aster formation; mitotic spindle organization.
6 alleles are reported . The
phenotypes of these alleles are annotated with: onion stage spermatid; primary spermatocyte; spermatid; centrosome; spermatocyte; aster; spermatozoon. It has
one annotated transcript and
one annotated polypeptide . Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult ovary. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult testis. Comments on Affy2 ProbeSet: ProbeSet 1631543_at aligns to a genomic region shared by exons of 2 FlyBase-annotated genes; hence it is impossible to interpret the expression pattern and levels of tra expression signal. See the GBrowse view of tra to determine the overlapping gene(s). Gene sequence location is
3L:16584307..16588114 .
User Contributed Data External Summaries
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Detailed Mapping Data
FlyBase Computed Cytological Location
Experimentally Determined Cytological Location
Experimentally Determined Recombination Data
Location Left of (cM) Right of (cM) Notes Gene Model & Products Comments on Gene
Model Gene model reviewed during 5.45
Low-frequency RNA-seq exon junction(s) not annotated.
Transcript Data Annotated Transcripts Additional Transcript Data
& Comments Reported size (kB) Comments External Data Crossreferences
Polypeptide Data Annotated
Polypeptides Additional Polypeptide
Data & Comments Reported size (kDa) Comments External Data Linkouts Crossreferences Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank UniProtKB/Swiss-Prot UniProtKB/TrEMBL Mapped Features Mapped Features have been reorganized, please
see this article for details. Additional mapped features and mutations can
be found on GBrowse or related reports. External Data Linkouts Crossreferences Expression Data Transcript ExpressionComment: maternally deposited
Additional Descriptive Data
Marker for Subcellular Localization CV Term Polypeptide Expression
Additional Descriptive Data
Marker for Subcellular Localization (GO Cellular Component) inferred from direct assay
inferred from direct assay
inferred from direct assay
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference
FlyAtlas Anatomy Microarray
Linear, scaled to maximum expression level
Tissue
Expression Level
Larval Central Nervous System
213.7
Larval Midgut
25.6
Larval Hindgut
26.2
Larval Malpighian Tubules
15
Larval Fat Body
41.2
Larval Salivary Gland
26.1
Larval Trachea
70.65
Larval Carcass
46.1
Adult Head
9
Adult Eye
5.575
Adult Brain
3.4
Adult Thoracic-Abdominal Ganglion
5.7
Adult Crop
10
Adult Midgut
25.4
Adult Hindgut
15.9
Adult Malpighian Tubules
16.9
Adult Fat Body
9.9
Adult Salivary Gland
4.2
Adult Heart
3.325
Adult VirginFemale Spermatheca
15.5
Adult InseminatedFemale Spermatheca
12
Adult Ovary
902.5
Adult Testis
178.8
Adult Male Accessory Gland
18.2
Adult Carcass
29.7
Expression Level Scale
None
Low
Moderate
High
Linear, scaled to Moderate expression
Tissue
Expression Level
Larval Central Nervous System
213.7
Larval Midgut
25.6
Larval Hindgut
26.2
Larval Malpighian Tubules
15
Larval Fat Body
41.2
Larval Salivary Gland
26.1
Larval Trachea
70.65
Larval Carcass
46.1
Adult Head
9
Adult Eye
5.575
Adult Brain
3.4
Adult Thoracic-Abdominal Ganglion
5.7
Adult Crop
10
Adult Midgut
25.4
Adult Hindgut
15.9
Adult Malpighian Tubules
16.9
Adult Fat Body
9.9
Adult Salivary Gland
4.2
Adult Heart
3.325
Adult VirginFemale Spermatheca
15.5
Adult InseminatedFemale Spermatheca
12
Adult Ovary
(902.5)
Adult Testis
178.8
Adult Male Accessory Gland
18.2
Adult Carcass
29.7
Expression Level Scale
None
Low
Moderate
High
Linear, scaled to High level expression
Tissue
Expression Level
Larval Central Nervous System
213.7
Larval Midgut
25.6
Larval Hindgut
26.2
Larval Malpighian Tubules
15
Larval Fat Body
41.2
Larval Salivary Gland
26.1
Larval Trachea
70.65
Larval Carcass
46.1
Adult Head
9
Adult Eye
5.575
Adult Brain
3.4
Adult Thoracic-Abdominal Ganglion
5.7
Adult Crop
10
Adult Midgut
25.4
Adult Hindgut
15.9
Adult Malpighian Tubules
16.9
Adult Fat Body
9.9
Adult Salivary Gland
4.2
Adult Heart
3.325
Adult VirginFemale Spermatheca
15.5
Adult InseminatedFemale Spermatheca
12
Adult Ovary
902.5
Adult Testis
178.8
Adult Male Accessory Gland
18.2
Adult Carcass
29.7
Expression Level Scale
None
Low
Moderate
High
Very high
Linear, scaled to Very high expression
Tissue
Expression Level
Larval Central Nervous System
213.7
Larval Midgut
25.6
Larval Hindgut
26.2
Larval Malpighian Tubules
15
Larval Fat Body
41.2
Larval Salivary Gland
26.1
Larval Trachea
70.65
Larval Carcass
46.1
Adult Head
9
Adult Eye
5.575
Adult Brain
3.4
Adult Thoracic-Abdominal Ganglion
5.7
Adult Crop
10
Adult Midgut
25.4
Adult Hindgut
15.9
Adult Malpighian Tubules
16.9
Adult Fat Body
9.9
Adult Salivary Gland
4.2
Adult Heart
3.325
Adult VirginFemale Spermatheca
15.5
Adult InseminatedFemale Spermatheca
12
Adult Ovary
902.5
Adult Testis
178.8
Adult Male Accessory Gland
18.2
Adult Carcass
29.7
Expression Level Scale
Very high
log, scaled to maximum expression level
Tissue
Expression Level
Larval Central Nervous System
213.7
Larval Midgut
25.6
Larval Hindgut
26.2
Larval Malpighian Tubules
15
Larval Fat Body
41.2
Larval Salivary Gland
26.1
Larval Trachea
70.65
Larval Carcass
46.1
Adult Head
9
Adult Eye
5.575
Adult Brain
3.4
Adult Thoracic-Abdominal Ganglion
5.7
Adult Crop
10
Adult Midgut
25.4
Adult Hindgut
15.9
Adult Malpighian Tubules
16.9
Adult Fat Body
9.9
Adult Salivary Gland
4.2
Adult Heart
3.325
Adult VirginFemale Spermatheca
15.5
Adult InseminatedFemale Spermatheca
12
Adult Ovary
902.5
Adult Testis
178.8
Adult Male Accessory Gland
18.2
Adult Carcass
29.7
Expression Level Scale
None
Low
Moderate
High
Very high
log, scaled to Moderate expression
Tissue
Expression Level
Larval Central Nervous System
213.7
Larval Midgut
25.6
Larval Hindgut
26.2
Larval Malpighian Tubules
15
Larval Fat Body
41.2
Larval Salivary Gland
26.1
Larval Trachea
70.65
Larval Carcass
46.1
Adult Head
9
Adult Eye
5.575
Adult Brain
3.4
Adult Thoracic-Abdominal Ganglion
5.7
Adult Crop
10
Adult Midgut
25.4
Adult Hindgut
15.9
Adult Malpighian Tubules
16.9
Adult Fat Body
9.9
Adult Salivary Gland
4.2
Adult Heart
3.325
Adult VirginFemale Spermatheca
15.5
Adult InseminatedFemale Spermatheca
12
Adult Ovary
(902.5)
Adult Testis
178.8
Adult Male Accessory Gland
18.2
Adult Carcass
29.7
Expression Level Scale
None
Low
Moderate
High
log, scaled to High level expression
Tissue
Expression Level
Larval Central Nervous System
213.7
Larval Midgut
25.6
Larval Hindgut
26.2
Larval Malpighian Tubules
15
Larval Fat Body
41.2
Larval Salivary Gland
26.1
Larval Trachea
70.65
Larval Carcass
46.1
Adult Head
9
Adult Eye
5.575
Adult Brain
3.4
Adult Thoracic-Abdominal Ganglion
5.7
Adult Crop
10
Adult Midgut
25.4
Adult Hindgut
15.9
Adult Malpighian Tubules
16.9
Adult Fat Body
9.9
Adult Salivary Gland
4.2
Adult Heart
3.325
Adult VirginFemale Spermatheca
15.5
Adult InseminatedFemale Spermatheca
12
Adult Ovary
902.5
Adult Testis
178.8
Adult Male Accessory Gland
18.2
Adult Carcass
29.7
Expression Level Scale
None
Low
Moderate
High
Very high
log, scaled to Very high expression
Tissue
Expression Level
Larval Central Nervous System
213.7
Larval Midgut
25.6
Larval Hindgut
26.2
Larval Malpighian Tubules
15
Larval Fat Body
41.2
Larval Salivary Gland
26.1
Larval Trachea
70.65
Larval Carcass
46.1
Adult Head
9
Adult Eye
5.575
Adult Brain
3.4
Adult Thoracic-Abdominal Ganglion
5.7
Adult Crop
10
Adult Midgut
25.4
Adult Hindgut
15.9
Adult Malpighian Tubules
16.9
Adult Fat Body
9.9
Adult Salivary Gland
4.2
Adult Heart
3.325
Adult VirginFemale Spermatheca
15.5
Adult InseminatedFemale Spermatheca
12
Adult Ovary
902.5
Adult Testis
178.8
Adult Male Accessory Gland
18.2
Adult Carcass
29.7
Expression Level Scale
None
Low
Moderate
High
Very high
Heatmap
Tissue
Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass
FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level
Tissue
Adult Expression Level
NA
Head
9
NA
Eye
5.575
NA
Brain
3.4
213.7
Central Nervous System
NA
NA
Thoracic-Abdominal Ganglion
5.7
NA
Crop
no informative data
no informative data
Midgut
no informative data
no informative data
Hindgut
no informative data
no informative data
Malpighian Tubules
no informative data
no informative data
Fat Body
9.9
26.1
Salivary Gland
4.2
NA
Heart
3.325
70.65
Trachea
NA
NA
VirginFemale Spermatheca
no informative data
NA
InseminatedFemale Spermatheca
no informative data
NA
Ovary
902.5
NA
Testis
178.8
NA
Male Accessory Gland
no informative data
46.1
Carcass
no informative data
modENCODE Anatomy RNA-Seq
Linear, scaled to maximum expression level
Tissue
Expression Level
imaginal disc, larvae L3 wandering
14
central nervous system, larvae L3
8
central nervous system, pupae P8
1
head, virgin 1-day female
0
head, virgin 4-day female
0
head, virgin 20-day female
0
head, mated 1-day female
1
head, mated 4-day female
0
head, mated 20-day female
0
head, mated 1-day male
0
head, mated 4-day male
0
head, mated 20-day male
1
salivary gland, larvae L3 wandering
0
salivary gland, white prepupae
0
digestive system, larvae L3 wandering
1
digestive system, 1-day adult
1
digestive system, 4-day adult
3
digestive system, 20-day adult
2
fat body, larvae L3 wandering
1
fat body, white prepupae
2
fat body, pupae P8
0
carcass, larvae L3 wandering
6
carcass, 1-day adult
1
carcass, 4-day adult
3
carcass, 20-day adult
3
ovary, virgin 4-day female
86
ovary, mated 4-day female
68
testis, mated 4-day male
14
accessory gland, mated 4-day male
2
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Linear, scaled to Moderate expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
14
central nervous system, larvae L3
8
central nervous system, pupae P8
1
head, virgin 1-day female
0
head, virgin 4-day female
0
head, virgin 20-day female
0
head, mated 1-day female
1
head, mated 4-day female
0
head, mated 20-day female
0
head, mated 1-day male
0
head, mated 4-day male
0
head, mated 20-day male
1
salivary gland, larvae L3 wandering
0
salivary gland, white prepupae
0
digestive system, larvae L3 wandering
1
digestive system, 1-day adult
1
digestive system, 4-day adult
3
digestive system, 20-day adult
2
fat body, larvae L3 wandering
1
fat body, white prepupae
2
fat body, pupae P8
0
carcass, larvae L3 wandering
6
carcass, 1-day adult
1
carcass, 4-day adult
3
carcass, 20-day adult
3
ovary, virgin 4-day female
(86)
ovary, mated 4-day female
(68)
testis, mated 4-day male
14
accessory gland, mated 4-day male
2
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
14
central nervous system, larvae L3
8
central nervous system, pupae P8
1
head, virgin 1-day female
0
head, virgin 4-day female
0
head, virgin 20-day female
0
head, mated 1-day female
1
head, mated 4-day female
0
head, mated 20-day female
0
head, mated 1-day male
0
head, mated 4-day male
0
head, mated 20-day male
1
salivary gland, larvae L3 wandering
0
salivary gland, white prepupae
0
digestive system, larvae L3 wandering
1
digestive system, 1-day adult
1
digestive system, 4-day adult
3
digestive system, 20-day adult
2
fat body, larvae L3 wandering
1
fat body, white prepupae
2
fat body, pupae P8
0
carcass, larvae L3 wandering
6
carcass, 1-day adult
1
carcass, 4-day adult
3
carcass, 20-day adult
3
ovary, virgin 4-day female
86
ovary, mated 4-day female
68
testis, mated 4-day male
14
accessory gland, mated 4-day male
2
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
14
central nervous system, larvae L3
8
central nervous system, pupae P8
1
head, virgin 1-day female
0
head, virgin 4-day female
0
head, virgin 20-day female
0
head, mated 1-day female
1
head, mated 4-day female
0
head, mated 20-day female
0
head, mated 1-day male
0
head, mated 4-day male
0
head, mated 20-day male
1
salivary gland, larvae L3 wandering
0
salivary gland, white prepupae
0
digestive system, larvae L3 wandering
1
digestive system, 1-day adult
1
digestive system, 4-day adult
3
digestive system, 20-day adult
2
fat body, larvae L3 wandering
1
fat body, white prepupae
2
fat body, pupae P8
0
carcass, larvae L3 wandering
6
carcass, 1-day adult
1
carcass, 4-day adult
3
carcass, 20-day adult
3
ovary, virgin 4-day female
86
ovary, mated 4-day female
68
testis, mated 4-day male
14
accessory gland, mated 4-day male
2
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Tissue
Expression Level
imaginal disc, larvae L3 wandering
14
central nervous system, larvae L3
8
central nervous system, pupae P8
1
head, virgin 1-day female
0
head, virgin 4-day female
0
head, virgin 20-day female
0
head, mated 1-day female
1
head, mated 4-day female
0
head, mated 20-day female
0
head, mated 1-day male
0
head, mated 4-day male
0
head, mated 20-day male
1
salivary gland, larvae L3 wandering
0
salivary gland, white prepupae
0
digestive system, larvae L3 wandering
1
digestive system, 1-day adult
1
digestive system, 4-day adult
3
digestive system, 20-day adult
2
fat body, larvae L3 wandering
1
fat body, white prepupae
2
fat body, pupae P8
0
carcass, larvae L3 wandering
6
carcass, 1-day adult
1
carcass, 4-day adult
3
carcass, 20-day adult
3
ovary, virgin 4-day female
86
ovary, mated 4-day female
68
testis, mated 4-day male
14
accessory gland, mated 4-day male
2
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Moderate expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
14
central nervous system, larvae L3
8
central nervous system, pupae P8
1
head, virgin 1-day female
0
head, virgin 4-day female
0
head, virgin 20-day female
0
head, mated 1-day female
1
head, mated 4-day female
0
head, mated 20-day female
0
head, mated 1-day male
0
head, mated 4-day male
0
head, mated 20-day male
1
salivary gland, larvae L3 wandering
0
salivary gland, white prepupae
0
digestive system, larvae L3 wandering
1
digestive system, 1-day adult
1
digestive system, 4-day adult
3
digestive system, 20-day adult
2
fat body, larvae L3 wandering
1
fat body, white prepupae
2
fat body, pupae P8
0
carcass, larvae L3 wandering
6
carcass, 1-day adult
1
carcass, 4-day adult
3
carcass, 20-day adult
3
ovary, virgin 4-day female
(86)
ovary, mated 4-day female
(68)
testis, mated 4-day male
14
accessory gland, mated 4-day male
2
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
14
central nervous system, larvae L3
8
central nervous system, pupae P8
1
head, virgin 1-day female
0
head, virgin 4-day female
0
head, virgin 20-day female
0
head, mated 1-day female
1
head, mated 4-day female
0
head, mated 20-day female
0
head, mated 1-day male
0
head, mated 4-day male
0
head, mated 20-day male
1
salivary gland, larvae L3 wandering
0
salivary gland, white prepupae
0
digestive system, larvae L3 wandering
1
digestive system, 1-day adult
1
digestive system, 4-day adult
3
digestive system, 20-day adult
2
fat body, larvae L3 wandering
1
fat body, white prepupae
2
fat body, pupae P8
0
carcass, larvae L3 wandering
6
carcass, 1-day adult
1
carcass, 4-day adult
3
carcass, 20-day adult
3
ovary, virgin 4-day female
86
ovary, mated 4-day female
68
testis, mated 4-day male
14
accessory gland, mated 4-day male
2
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Tissue
Expression Level
imaginal disc, larvae L3 wandering
14
central nervous system, larvae L3
8
central nervous system, pupae P8
1
head, virgin 1-day female
0
head, virgin 4-day female
0
head, virgin 20-day female
0
head, mated 1-day female
1
head, mated 4-day female
0
head, mated 20-day female
0
head, mated 1-day male
0
head, mated 4-day male
0
head, mated 20-day male
1
salivary gland, larvae L3 wandering
0
salivary gland, white prepupae
0
digestive system, larvae L3 wandering
1
digestive system, 1-day adult
1
digestive system, 4-day adult
3
digestive system, 20-day adult
2
fat body, larvae L3 wandering
1
fat body, white prepupae
2
fat body, pupae P8
0
carcass, larvae L3 wandering
6
carcass, 1-day adult
1
carcass, 4-day adult
3
carcass, 20-day adult
3
ovary, virgin 4-day female
86
ovary, mated 4-day female
68
testis, mated 4-day male
14
accessory gland, mated 4-day male
2
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Tissue
Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male
modENCODE Development RNA-Seq
Linear, scaled to maximum expression level
Developmental Stage
Expression Level
embryo 00-02hr
122
embryo 02-04hr
31
embryo 04-06hr
48
embryo 06-08hr
44
embryo 08-10hr
22
embryo 10-12hr
8
embryo 12-14hr
4
embryo 14-16hr
3
embryo 16-18hr
2
embryo 18-20hr
1
embryo 20-22hr
1
embryo 22-24hr
1
larva L1
1
larva L2
1
larva L3 12hr old
2
larva L3 puffstage 1-2
4
larva L3 puffstage 3-6
6
larva L3 puffstage 7-9
5
white prepupae new
5
white prepupae 12hr
11
white prepupae 24hr
9
pupae 2d postWPP
4
pupae 3d postWPP
3
pupae 4d postWPP
4
adult male 01day
4
adult male 05day
7
adult male 30day
5
adult female 01day
26
adult female 05day
61
adult female 30day
67
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Moderate expression
Developmental Stage
Expression Level
embryo 00-02hr
(122)
embryo 02-04hr
(31)
embryo 04-06hr
(48)
embryo 06-08hr
(44)
embryo 08-10hr
22
embryo 10-12hr
8
embryo 12-14hr
4
embryo 14-16hr
3
embryo 16-18hr
2
embryo 18-20hr
1
embryo 20-22hr
1
embryo 22-24hr
1
larva L1
1
larva L2
1
larva L3 12hr old
2
larva L3 puffstage 1-2
4
larva L3 puffstage 3-6
6
larva L3 puffstage 7-9
5
white prepupae new
5
white prepupae 12hr
11
white prepupae 24hr
9
pupae 2d postWPP
4
pupae 3d postWPP
3
pupae 4d postWPP
4
adult male 01day
4
adult male 05day
7
adult male 30day
5
adult female 01day
26
adult female 05day
(61)
adult female 30day
(67)
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Developmental Stage
Expression Level
embryo 00-02hr
(122)
embryo 02-04hr
31
embryo 04-06hr
48
embryo 06-08hr
44
embryo 08-10hr
22
embryo 10-12hr
8
embryo 12-14hr
4
embryo 14-16hr
3
embryo 16-18hr
2
embryo 18-20hr
1
embryo 20-22hr
1
embryo 22-24hr
1
larva L1
1
larva L2
1
larva L3 12hr old
2
larva L3 puffstage 1-2
4
larva L3 puffstage 3-6
6
larva L3 puffstage 7-9
5
white prepupae new
5
white prepupae 12hr
11
white prepupae 24hr
9
pupae 2d postWPP
4
pupae 3d postWPP
3
pupae 4d postWPP
4
adult male 01day
4
adult male 05day
7
adult male 30day
5
adult female 01day
26
adult female 05day
61
adult female 30day
67
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Developmental Stage
Expression Level
embryo 00-02hr
122
embryo 02-04hr
31
embryo 04-06hr
48
embryo 06-08hr
44
embryo 08-10hr
22
embryo 10-12hr
8
embryo 12-14hr
4
embryo 14-16hr
3
embryo 16-18hr
2
embryo 18-20hr
1
embryo 20-22hr
1
embryo 22-24hr
1
larva L1
1
larva L2
1
larva L3 12hr old
2
larva L3 puffstage 1-2
4
larva L3 puffstage 3-6
6
larva L3 puffstage 7-9
5
white prepupae new
5
white prepupae 12hr
11
white prepupae 24hr
9
pupae 2d postWPP
4
pupae 3d postWPP
3
pupae 4d postWPP
4
adult male 01day
4
adult male 05day
7
adult male 30day
5
adult female 01day
26
adult female 05day
61
adult female 30day
67
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Developmental Stage
Expression Level
embryo 00-02hr
122
embryo 02-04hr
31
embryo 04-06hr
48
embryo 06-08hr
44
embryo 08-10hr
22
embryo 10-12hr
8
embryo 12-14hr
4
embryo 14-16hr
3
embryo 16-18hr
2
embryo 18-20hr
1
embryo 20-22hr
1
embryo 22-24hr
1
larva L1
1
larva L2
1
larva L3 12hr old
2
larva L3 puffstage 1-2
4
larva L3 puffstage 3-6
6
larva L3 puffstage 7-9
5
white prepupae new
5
white prepupae 12hr
11
white prepupae 24hr
9
pupae 2d postWPP
4
pupae 3d postWPP
3
pupae 4d postWPP
4
adult male 01day
4
adult male 05day
7
adult male 30day
5
adult female 01day
26
adult female 05day
61
adult female 30day
67
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Moderate expression
Developmental Stage
Expression Level
embryo 00-02hr
(122)
embryo 02-04hr
31
embryo 04-06hr
(48)
embryo 06-08hr
(44)
embryo 08-10hr
22
embryo 10-12hr
8
embryo 12-14hr
4
embryo 14-16hr
3
embryo 16-18hr
2
embryo 18-20hr
1
embryo 20-22hr
1
embryo 22-24hr
1
larva L1
1
larva L2
1
larva L3 12hr old
2
larva L3 puffstage 1-2
4
larva L3 puffstage 3-6
6
larva L3 puffstage 7-9
5
white prepupae new
5
white prepupae 12hr
11
white prepupae 24hr
9
pupae 2d postWPP
4
pupae 3d postWPP
3
pupae 4d postWPP
4
adult male 01day
4
adult male 05day
7
adult male 30day
5
adult female 01day
26
adult female 05day
(61)
adult female 30day
(67)
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Developmental Stage
Expression Level
embryo 00-02hr
122
embryo 02-04hr
31
embryo 04-06hr
48
embryo 06-08hr
44
embryo 08-10hr
22
embryo 10-12hr
8
embryo 12-14hr
4
embryo 14-16hr
3
embryo 16-18hr
2
embryo 18-20hr
1
embryo 20-22hr
1
embryo 22-24hr
1
larva L1
1
larva L2
1
larva L3 12hr old
2
larva L3 puffstage 1-2
4
larva L3 puffstage 3-6
6
larva L3 puffstage 7-9
5
white prepupae new
5
white prepupae 12hr
11
white prepupae 24hr
9
pupae 2d postWPP
4
pupae 3d postWPP
3
pupae 4d postWPP
4
adult male 01day
4
adult male 05day
7
adult male 30day
5
adult female 01day
26
adult female 05day
61
adult female 30day
67
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Developmental Stage
Expression Level
embryo 00-02hr
122
embryo 02-04hr
31
embryo 04-06hr
48
embryo 06-08hr
44
embryo 08-10hr
22
embryo 10-12hr
8
embryo 12-14hr
4
embryo 14-16hr
3
embryo 16-18hr
2
embryo 18-20hr
1
embryo 20-22hr
1
embryo 22-24hr
1
larva L1
1
larva L2
1
larva L3 12hr old
2
larva L3 puffstage 1-2
4
larva L3 puffstage 3-6
6
larva L3 puffstage 7-9
5
white prepupae new
5
white prepupae 12hr
11
white prepupae 24hr
9
pupae 2d postWPP
4
pupae 3d postWPP
3
pupae 4d postWPP
4
adult male 01day
4
adult male 05day
7
adult male 30day
5
adult female 01day
26
adult female 05day
61
adult female 30day
67
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Developmental Stage
Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day
modENCODE Cell Lines RNA-Seq
Linear, scaled to maximum expression level
Cell Line
Expression Level
Schneider line 2 S2R+
24
Schneider line 2 Sg4
34
embryonic 1182-4H
19
embryonic GM2
15
embryonic Kc167
14
embryonic S1
18
embryonic S3
13
leg disc CME L1
25
wing disc CME-W2
13
wing disc ML-DmD8
13
wing disc ML-DmD9
16
wing disc ML-DmD16-c3
9
wing disc ML-DmD21
15
wing disc ML-DmD32
11
haltere disc ML-DmD17-c3
31
eye-antennal disc ML-DmD11
17
antennal disc ML-DmD20-c5
17
mixed discs ML-DmD4-c1
13
CNS ML-DmBG1-c1
23
CNS ML-DmBG2-c2
7
tumorous blood cells mbn2
6
ovary fGS/OSS
34
ovary OSC
17
ovary OSS
8
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to Moderate expression
Cell Line
Expression Level
Schneider line 2 S2R+
24
Schneider line 2 Sg4
(34)
embryonic 1182-4H
19
embryonic GM2
15
embryonic Kc167
14
embryonic S1
18
embryonic S3
13
leg disc CME L1
25
wing disc CME-W2
13
wing disc ML-DmD8
13
wing disc ML-DmD9
16
wing disc ML-DmD16-c3
9
wing disc ML-DmD21
15
wing disc ML-DmD32
11
haltere disc ML-DmD17-c3
(31)
eye-antennal disc ML-DmD11
17
antennal disc ML-DmD20-c5
17
mixed discs ML-DmD4-c1
13
CNS ML-DmBG1-c1
23
CNS ML-DmBG2-c2
7
tumorous blood cells mbn2
6
ovary fGS/OSS
(34)
ovary OSC
17
ovary OSS
8
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Cell Line
Expression Level
Schneider line 2 S2R+
24
Schneider line 2 Sg4
34
embryonic 1182-4H
19
embryonic GM2
15
embryonic Kc167
14
embryonic S1
18
embryonic S3
13
leg disc CME L1
25
wing disc CME-W2
13
wing disc ML-DmD8
13
wing disc ML-DmD9
16
wing disc ML-DmD16-c3
9
wing disc ML-DmD21
15
wing disc ML-DmD32
11
haltere disc ML-DmD17-c3
31
eye-antennal disc ML-DmD11
17
antennal disc ML-DmD20-c5
17
mixed discs ML-DmD4-c1
13
CNS ML-DmBG1-c1
23
CNS ML-DmBG2-c2
7
tumorous blood cells mbn2
6
ovary fGS/OSS
34
ovary OSC
17
ovary OSS
8
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Cell Line
Expression Level
Schneider line 2 S2R+
24
Schneider line 2 Sg4
34
embryonic 1182-4H
19
embryonic GM2
15
embryonic Kc167
14
embryonic S1
18
embryonic S3
13
leg disc CME L1
25
wing disc CME-W2
13
wing disc ML-DmD8
13
wing disc ML-DmD9
16
wing disc ML-DmD16-c3
9
wing disc ML-DmD21
15
wing disc ML-DmD32
11
haltere disc ML-DmD17-c3
31
eye-antennal disc ML-DmD11
17
antennal disc ML-DmD20-c5
17
mixed discs ML-DmD4-c1
13
CNS ML-DmBG1-c1
23
CNS ML-DmBG2-c2
7
tumorous blood cells mbn2
6
ovary fGS/OSS
34
ovary OSC
17
ovary OSS
8
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Cell Line
Expression Level
Schneider line 2 S2R+
24
Schneider line 2 Sg4
34
embryonic 1182-4H
19
embryonic GM2
15
embryonic Kc167
14
embryonic S1
18
embryonic S3
13
leg disc CME L1
25
wing disc CME-W2
13
wing disc ML-DmD8
13
wing disc ML-DmD9
16
wing disc ML-DmD16-c3
9
wing disc ML-DmD21
15
wing disc ML-DmD32
11
haltere disc ML-DmD17-c3
31
eye-antennal disc ML-DmD11
17
antennal disc ML-DmD20-c5
17
mixed discs ML-DmD4-c1
13
CNS ML-DmBG1-c1
23
CNS ML-DmBG2-c2
7
tumorous blood cells mbn2
6
ovary fGS/OSS
34
ovary OSC
17
ovary OSS
8
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to Moderate expression
Cell Line
Expression Level
Schneider line 2 S2R+
24
Schneider line 2 Sg4
(34)
embryonic 1182-4H
19
embryonic GM2
15
embryonic Kc167
14
embryonic S1
18
embryonic S3
13
leg disc CME L1
25
wing disc CME-W2
13
wing disc ML-DmD8
13
wing disc ML-DmD9
16
wing disc ML-DmD16-c3
9
wing disc ML-DmD21
15
wing disc ML-DmD32
11
haltere disc ML-DmD17-c3
31
eye-antennal disc ML-DmD11
17
antennal disc ML-DmD20-c5
17
mixed discs ML-DmD4-c1
13
CNS ML-DmBG1-c1
23
CNS ML-DmBG2-c2
7
tumorous blood cells mbn2
6
ovary fGS/OSS
(34)
ovary OSC
17
ovary OSS
8
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Cell Line
Expression Level
Schneider line 2 S2R+
24
Schneider line 2 Sg4
34
embryonic 1182-4H
19
embryonic GM2
15
embryonic Kc167
14
embryonic S1
18
embryonic S3
13
leg disc CME L1
25
wing disc CME-W2
13
wing disc ML-DmD8
13
wing disc ML-DmD9
16
wing disc ML-DmD16-c3
9
wing disc ML-DmD21
15
wing disc ML-DmD32
11
haltere disc ML-DmD17-c3
31
eye-antennal disc ML-DmD11
17
antennal disc ML-DmD20-c5
17
mixed discs ML-DmD4-c1
13
CNS ML-DmBG1-c1
23
CNS ML-DmBG2-c2
7
tumorous blood cells mbn2
6
ovary fGS/OSS
34
ovary OSC
17
ovary OSS
8
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Cell Line
Expression Level
Schneider line 2 S2R+
24
Schneider line 2 Sg4
34
embryonic 1182-4H
19
embryonic GM2
15
embryonic Kc167
14
embryonic S1
18
embryonic S3
13
leg disc CME L1
25
wing disc CME-W2
13
wing disc ML-DmD8
13
wing disc ML-DmD9
16
wing disc ML-DmD16-c3
9
wing disc ML-DmD21
15
wing disc ML-DmD32
11
haltere disc ML-DmD17-c3
31
eye-antennal disc ML-DmD11
17
antennal disc ML-DmD20-c5
17
mixed discs ML-DmD4-c1
13
CNS ML-DmBG1-c1
23
CNS ML-DmBG2-c2
7
tumorous blood cells mbn2
6
ovary fGS/OSS
34
ovary OSC
17
ovary OSS
8
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Cell Line
Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS
modENCODE Treatments RNA-Seq
Linear, scaled to maximum expression level
Treatment
Expression Level
extended cold, 4-day adult
11
cold shock, 4-day adult
7
heat shock, 4-day adult
20
Cadmium 50 mM 6 hrs, larvae L3
3
Cadmium 50 mM 12 hrs, larvae L3
2
Cadmium 50 mM 48 hrs, 4-day adult
17
Cadmium 100 mM 48 hrs, 4-day adult
51
Copper 0.5 mM 12 hrs, larvae L3
2
Copper 15 mM 48 hrs, 4-day adult
13
Zinc 5 mM 12 hrs, larvae L3
1
Zinc 4.5 mM 48 hrs, 4-day adult
6
Ethanol 2.5% 3 hrs, larvae L3
60
Ethanol 5% 3 hrs, larvae L3
2
Ethanol 10% 3 hrs, larvae L3
2
Caffeine 1.5 mg/ml 4 hrs, larvae L3
2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
45
Caffeine 25 mg/ml 48 hrs, 4-day adult
14
Paraquat 5 mM 48 hrs, 4-day adult
37
Paraquat 10 mM 48 hrs, 4-day adult
35
Rotenone 2 μg 12 hrs, larvae L3
2
Rotenone 8 μg 12 hrs, larvae L3
3
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Linear, scaled to Moderate expression
Treatment
Expression Level
extended cold, 4-day adult
11
cold shock, 4-day adult
7
heat shock, 4-day adult
20
Cadmium 50 mM 6 hrs, larvae L3
3
Cadmium 50 mM 12 hrs, larvae L3
2
Cadmium 50 mM 48 hrs, 4-day adult
17
Cadmium 100 mM 48 hrs, 4-day adult
(51)
Copper 0.5 mM 12 hrs, larvae L3
2
Copper 15 mM 48 hrs, 4-day adult
13
Zinc 5 mM 12 hrs, larvae L3
1
Zinc 4.5 mM 48 hrs, 4-day adult
6
Ethanol 2.5% 3 hrs, larvae L3
(60)
Ethanol 5% 3 hrs, larvae L3
2
Ethanol 10% 3 hrs, larvae L3
2
Caffeine 1.5 mg/ml 4 hrs, larvae L3
2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(45)
Caffeine 25 mg/ml 48 hrs, 4-day adult
14
Paraquat 5 mM 48 hrs, 4-day adult
(37)
Paraquat 10 mM 48 hrs, 4-day adult
(35)
Rotenone 2 μg 12 hrs, larvae L3
2
Rotenone 8 μg 12 hrs, larvae L3
3
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Treatment
Expression Level
extended cold, 4-day adult
11
cold shock, 4-day adult
7
heat shock, 4-day adult
20
Cadmium 50 mM 6 hrs, larvae L3
3
Cadmium 50 mM 12 hrs, larvae L3
2
Cadmium 50 mM 48 hrs, 4-day adult
17
Cadmium 100 mM 48 hrs, 4-day adult
51
Copper 0.5 mM 12 hrs, larvae L3
2
Copper 15 mM 48 hrs, 4-day adult
13
Zinc 5 mM 12 hrs, larvae L3
1
Zinc 4.5 mM 48 hrs, 4-day adult
6
Ethanol 2.5% 3 hrs, larvae L3
60
Ethanol 5% 3 hrs, larvae L3
2
Ethanol 10% 3 hrs, larvae L3
2
Caffeine 1.5 mg/ml 4 hrs, larvae L3
2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
45
Caffeine 25 mg/ml 48 hrs, 4-day adult
14
Paraquat 5 mM 48 hrs, 4-day adult
37
Paraquat 10 mM 48 hrs, 4-day adult
35
Rotenone 2 μg 12 hrs, larvae L3
2
Rotenone 8 μg 12 hrs, larvae L3
3
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Treatment
Expression Level
extended cold, 4-day adult
11
cold shock, 4-day adult
7
heat shock, 4-day adult
20
Cadmium 50 mM 6 hrs, larvae L3
3
Cadmium 50 mM 12 hrs, larvae L3
2
Cadmium 50 mM 48 hrs, 4-day adult
17
Cadmium 100 mM 48 hrs, 4-day adult
51
Copper 0.5 mM 12 hrs, larvae L3
2
Copper 15 mM 48 hrs, 4-day adult
13
Zinc 5 mM 12 hrs, larvae L3
1
Zinc 4.5 mM 48 hrs, 4-day adult
6
Ethanol 2.5% 3 hrs, larvae L3
60
Ethanol 5% 3 hrs, larvae L3
2
Ethanol 10% 3 hrs, larvae L3
2
Caffeine 1.5 mg/ml 4 hrs, larvae L3
2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
45
Caffeine 25 mg/ml 48 hrs, 4-day adult
14
Paraquat 5 mM 48 hrs, 4-day adult
37
Paraquat 10 mM 48 hrs, 4-day adult
35
Rotenone 2 μg 12 hrs, larvae L3
2
Rotenone 8 μg 12 hrs, larvae L3
3
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Treatment
Expression Level
extended cold, 4-day adult
11
cold shock, 4-day adult
7
heat shock, 4-day adult
20
Cadmium 50 mM 6 hrs, larvae L3
3
Cadmium 50 mM 12 hrs, larvae L3
2
Cadmium 50 mM 48 hrs, 4-day adult
17
Cadmium 100 mM 48 hrs, 4-day adult
51
Copper 0.5 mM 12 hrs, larvae L3
2
Copper 15 mM 48 hrs, 4-day adult
13
Zinc 5 mM 12 hrs, larvae L3
1
Zinc 4.5 mM 48 hrs, 4-day adult
6
Ethanol 2.5% 3 hrs, larvae L3
60
Ethanol 5% 3 hrs, larvae L3
2
Ethanol 10% 3 hrs, larvae L3
2
Caffeine 1.5 mg/ml 4 hrs, larvae L3
2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
45
Caffeine 25 mg/ml 48 hrs, 4-day adult
14
Paraquat 5 mM 48 hrs, 4-day adult
37
Paraquat 10 mM 48 hrs, 4-day adult
35
Rotenone 2 μg 12 hrs, larvae L3
2
Rotenone 8 μg 12 hrs, larvae L3
3
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
log, scaled to Moderate expression
Treatment
Expression Level
extended cold, 4-day adult
11
cold shock, 4-day adult
7
heat shock, 4-day adult
20
Cadmium 50 mM 6 hrs, larvae L3
3
Cadmium 50 mM 12 hrs, larvae L3
2
Cadmium 50 mM 48 hrs, 4-day adult
17
Cadmium 100 mM 48 hrs, 4-day adult
(51)
Copper 0.5 mM 12 hrs, larvae L3
2
Copper 15 mM 48 hrs, 4-day adult
13
Zinc 5 mM 12 hrs, larvae L3
1
Zinc 4.5 mM 48 hrs, 4-day adult
6
Ethanol 2.5% 3 hrs, larvae L3
(60)
Ethanol 5% 3 hrs, larvae L3
2
Ethanol 10% 3 hrs, larvae L3
2
Caffeine 1.5 mg/ml 4 hrs, larvae L3
2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
(45)
Caffeine 25 mg/ml 48 hrs, 4-day adult
14
Paraquat 5 mM 48 hrs, 4-day adult
(37)
Paraquat 10 mM 48 hrs, 4-day adult
(35)
Rotenone 2 μg 12 hrs, larvae L3
2
Rotenone 8 μg 12 hrs, larvae L3
3
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Treatment
Expression Level
extended cold, 4-day adult
11
cold shock, 4-day adult
7
heat shock, 4-day adult
20
Cadmium 50 mM 6 hrs, larvae L3
3
Cadmium 50 mM 12 hrs, larvae L3
2
Cadmium 50 mM 48 hrs, 4-day adult
17
Cadmium 100 mM 48 hrs, 4-day adult
51
Copper 0.5 mM 12 hrs, larvae L3
2
Copper 15 mM 48 hrs, 4-day adult
13
Zinc 5 mM 12 hrs, larvae L3
1
Zinc 4.5 mM 48 hrs, 4-day adult
6
Ethanol 2.5% 3 hrs, larvae L3
60
Ethanol 5% 3 hrs, larvae L3
2
Ethanol 10% 3 hrs, larvae L3
2
Caffeine 1.5 mg/ml 4 hrs, larvae L3
2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
45
Caffeine 25 mg/ml 48 hrs, 4-day adult
14
Paraquat 5 mM 48 hrs, 4-day adult
37
Paraquat 10 mM 48 hrs, 4-day adult
35
Rotenone 2 μg 12 hrs, larvae L3
2
Rotenone 8 μg 12 hrs, larvae L3
3
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Treatment
Expression Level
extended cold, 4-day adult
11
cold shock, 4-day adult
7
heat shock, 4-day adult
20
Cadmium 50 mM 6 hrs, larvae L3
3
Cadmium 50 mM 12 hrs, larvae L3
2
Cadmium 50 mM 48 hrs, 4-day adult
17
Cadmium 100 mM 48 hrs, 4-day adult
51
Copper 0.5 mM 12 hrs, larvae L3
2
Copper 15 mM 48 hrs, 4-day adult
13
Zinc 5 mM 12 hrs, larvae L3
1
Zinc 4.5 mM 48 hrs, 4-day adult
6
Ethanol 2.5% 3 hrs, larvae L3
60
Ethanol 5% 3 hrs, larvae L3
2
Ethanol 10% 3 hrs, larvae L3
2
Caffeine 1.5 mg/ml 4 hrs, larvae L3
2
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
45
Caffeine 25 mg/ml 48 hrs, 4-day adult
14
Paraquat 5 mM 48 hrs, 4-day adult
37
Paraquat 10 mM 48 hrs, 4-day adult
35
Rotenone 2 μg 12 hrs, larvae L3
2
Rotenone 8 μg 12 hrs, larvae L3
3
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Treatment
Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
External Data & Images
Linkouts
- Cell culture data for RNAi and other high-throughput technologies
- Adult expression by tissue, using Affymetrix Dros2 array
Alleles & Phenotypes Summary of Allele Phenotypes Classical Alleles ( 3 ) For All Classical Alleles Show Alleles Carried on Transgenic Constructs
( 3 ) For All Alleles Carried on Transgenic
Constructs Show Aneuploid Aberrations Disrupted in Not disrupted in Transgenic Constructs & Insertions
Transgenic Constructs characterization construct
Insertions insertion of mobile activating element
Gene Ontology: Function, Process
& Cellular Component ( 7 unique terms ) Terms Based on
Experimental Evidence ( 7 terms ) Molecular Function ( 0 terms) Biological Process inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component inferred from direct assay
inferred from direct assay
inferred from direct assay
Terms Based on Predictions or
Assertions ( 0 terms ) Sequence Ontology: Class of Gene Interactions & Pathways
Summary of Physical Interactions
protein-protein anti tag coimmunoprecipitation, peptide massfingerprinting
Summary of Genetic Interactions Interacts with Please look at the allele data
for full details of the genetic interactions
External Data Linkouts
- A database of protein and genetic interactions
- DPiM, Drosophila Protein interaction Map
- A comprehensive database of gene and protein interactions.
Protein-protein interactions (PPI) from both known and predicted PPI data sets.
Orthologs
OrthoDB Orthologs (32)
- based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
OrthoDB orthology group searches
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
No orthologs identified
Orthologs in Drosophila Species
(EOG61RQDC )
Drosophila melanogaster
fruit fly
Drosophila pseudoobscura pseudoobscura
Orthologs in non-Drosophila Dipterans
(EOG6WM52Q )
Aedes aegypti
Yellow fever mosquito
Anopheles gambiae
Malaria mosquito
Culex quinquefasciatus
Southern house mosquito
Orthologs in non-Dipteran Insects
(EOG6BZKXF )
Apis mellifera
Western honey bee
Amel\GB45229
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG009229
Acromyrmex echinatior
Panamanian leafcutter ant
Aech\AECH14606
Atta cephalotes
Leafcutter ant
Acep\ACEP19096
Camponotus floridanus
Florida carpenter ant
Cflo\CFLO18418
Harpegnathos saltator
Jerdons jumping ant
Hsal\HSAL13374
Linepithema humile
Argentine ant
Lhum\LH16624
Pogonomyrmex barbatus
Red harvester ant
Pbar\PB15265
Solenopsis invicta
Red fire ant
Sinv\SINV13951
Solenopsis invicta
Red fire ant
Sinv\SINV11293
Solenopsis invicta
Red fire ant
Sinv\SINV11285
Acyrthosiphon pisum
Pea aphid
Pediculus humanus
Human body louse
Tribolium castaneum
Red flour beetle
Orthologs in non-Insect Arthropods
(EOG69W0W6 )
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)AAA Orthologs (0)
based on analysis using Dmel annotation version 4.3
Stocks & Reagents Stocks Listed in FlyBase ( 3 )VDRC Genomic Clones ( 2 )Please Note FlyBase no
longer curates genomic clone accessions so this list
may not be complete
cDNA Clones ( 35 )Please Note This section lists
cDNAs and ESTs that fall within the genomic extent
of the gene model, which may include cDNAs and ESTs
of genes within introns, or of overlapping genes.
Please see
GBrowse for alignment of the cDNAs and ESTs
to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones Other clones cDNA Clones, End Sequenced
(ESTs) BDGP DGC clones Other clones RNAi & Array Information Linkouts
- Results from RNAi screens.
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
Antibody Information
Other Information Discoverer Etymology Identification Relationship to Other Genes Source for database identity of Source for identity of: spd-2 CG17286
Source for database merge of Additional comments CR18217 appears to be a chimeric gene, with the 5' part of the gene derived from
spd-2 and the 3' part of the gene derived from
CG4098 .
"CG18217" is a putative chimeric gene derived from the "spd-2" and "CG4098" genes (where coding sequences of the two parental genes contribute to the coding sequence of the chimeric gene).
Other Comments spd-2 is required for efficient recruitment of pericentriolar material.
spd-2 is required for pericentriolar material recruitment and astral microtubule nucleation in both neuroblasts and spermatocytes.
spd-2 is essential for proper pericentriolar material recruitment to the sperm centriole, and hence for microtubule nucleation and pronuclear fusion.
RNAi screen using dsRNA made from templates generated with primers directed against this gene causes decreased γ-tubulin staining at the spindle pole when assayed in S2 cells. This phenotype can be observed when the screen is performed with or without
Cdc27 dsRNA.
Transcription unit defined during molecular analysis of
tra gene region.
External Crossreferences & Linkouts
Sequence Crossreferences
- A searchable database of RefSeq genes.
Other Crossreferences
- Patterns of gene expression in Drosophila embryogenesis
Linkouts
- A database of protein and genetic interactions
- DPiM, Drosophila Protein interaction Map
- A comprehensive database of gene and protein interactions.
- Results from RNAi screens.
- Cell culture data for RNAi and other high-throughput technologies
- Adult expression by tissue, using Affymetrix Dros2 array
- Integrated genomics database for Drosophila, Anopheles, and C.elegans
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
- A cyberspace guide to Drosophila development and metazoan evolution
Protein-protein interactions (PPI) from both known and predicted PPI data sets.
- Data generated by the modENCODE project.
Synonyms & Secondary IDs
( 22 )Reported As Symbol Synonym CG17286
(
Rogers and Hartl, 2012 ,
Goshima et al., 2007 ,
Giansanti et al., 2008 ,
Dix and Raff, 2007 ,
Dobbelaere et al., 2008 ,
Dix and Raff, 2007 ,
Keleman et al., 2009.8.5 )
Spd-2
(
Goshima et al., 2007 ,
Goshima et al., 2007 ,
Dix and Raff, 2007 ,
Mottier-Pavie and Megraw, 2009 ,
Yuan et al., 2012 ,
Delgehyr et al., 2012 )
Name Synonym Secondary FlyBase
IDs References ( 42 )Generate a list of List References by type
Recent research papers ( 11 )
Delgehyr et al., 2012, Proc. Natl. Acad. Sci. U.S.A. 109(15): 5729--5734Drosophila Mgr, a Prefoldin subunit cooperating with von Hippel Lindau to regulate tubulin stability. [FBrf0218047] Fu and Glover, 2012, Open Biol. 2(8): 120104Structured illumination of the interface between centriole and peri-centriolar material. [FBrf0219444] Habermann et al., 2012, Mol. Cell. Biol. 32(17): 3554--3569Functional Analysis of Centrosomal Kinase Substrates in Drosophila melanogaster Reveals a New Function of the Nuclear Envelope Component Otefin in Cell Cycle Progression. [FBrf0219185] Korenjak et al., 2012, Mol. Cell. Biol. 32(21): 4375--4387RBF Binding to both Canonical E2F Targets and Noncanonical Targets Depends on Functional dE2F/dDP Complexes. [FBrf0219643] Krauchunas et al., 2012, Dev. Biol. 370(1): 125--134Protein phosphorylation changes reveal new candidates in the regulation of egg activation and early embryogenesis in D. melanogaster. [FBrf0219342] Reschen et al., 2012, Biol. Open 1(5): 422--429Dgp71WD is required for the assembly of the acentrosomal Meiosis I spindle, and is not a general targeting factor for the γ-TuRC. [FBrf0220171] Riparbelli et al., 2012, Dev. Cell 23(2): 425--432Assembly and persistence of primary cilia in dividing Drosophila spermatocytes. [FBrf0219210] Rogers and Hartl, 2012, Mol. Biol. Evol. 29(2): 517--529Chimeric Genes as a Source of Rapid Evolution in Drosophila melanogaster. [FBrf0217452] Yuan et al., 2012, Dev. Biol. 361(1): 57--67Regulation of cyclin A localization downstream of Par-1 function is critical for the centrosome orientation checkpoint in Drosophila male germline stem cells. [FBrf0216861] Przewloka et al., 2011, Curr. Biol. 21(5): 399--405CENP-C Is a Structural Platform for Kinetochore Assembly. [FBrf0213151] Riparbelli and Callaini, 2011, Dev. Biol. 349(2): 427--439Male gametogenesis without centrioles. [FBrf0212739]