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Gene Dmel\β4GalNAcTA

General Information
Symbol	Dmel\β4GalNAcTA	Species	D. melanogaster
Name	β4GalNAcTA	Annotation symbol	CG8536
Feature type	protein_coding_gene	FlyBase ID	FBgn0027538
Gene Model Status	Current	Stock availability	8 publicly available
Also Known As	beta4GalNacTA, b4GalNAcTA
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	50E6-50E6	Sequence location	2R:10,146,535..10,148,655 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene β4GalNAcTA is referred to in FlyBase by the symbol Dmel\β4GalNAcTA (CG8536, FBgn0027538). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity; acetylgalactosaminyltransferase activity. There is experimental evidence that it is involved in the biological process: N-acetylglucosamine metabolic process; glycolipid biosynthetic process; adult locomotory behavior; sperm individualization; neuromuscular junction development. 13 alleles are reported. The phenotypes of these alleles are annotated with: A1-7 ventral longitudinal muscle 3; NMJ bouton; A1-7 ventral longitudinal muscle 4; embryonic/larval neuromuscular junction. It has one annotated transcript and one annotated polypeptide. Protein features are: Galactosyltransferase, metazoa. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 18-24 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult brain, larval/adult midgut, adult heart, larval/adult fat body, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1638113_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of beta4GalNAcTA. Gene sequence location is 2R:10146535..10148655.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 50E6-50E6   Limits computationally determined from genome sequence between P{lacW}l(2)s3475s3475&P{lacW}Hsc70-5k04907 and P{PZ}Tfb106949&P{PZ}l(2)0356303563
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\β4GalNAcTA for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) β4GalNAcTA-RA FBtr0087539  NM_137102   1867   403
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein β4GalNAcTA-PA   FBpp0086668   45.6   403   9.83     NP_610946   AAF58268
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Galactosyltransferase, metazoa (IPR003859)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA202366   AE013599 AAF58268   AF132158 AAD34746   AI135553   AI513247   AI519416   AI531352   AI531394   AI533584   AX094004   AY095531 AAM12262   BG639749   BI165491   BI370121   CO177370   CO344642   CZ483270   CZ483271   EC257492   ES693222   EV584043
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q7KN92
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 13 -- 16   embryonic/larval garland cell   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Golgi apparatus inferred from direct assay (Johswich et al., 2009)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult brain, larval/adult midgut, adult heart, larval/adult fat body, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    79.575 Larval Midgut    110.2 Larval Hindgut    90 Larval Malpighian Tubules    30 Larval Fat Body    101.8 Larval Salivary Gland    65.4 Larval Trachea    53.8 Larval Carcass    69.65 Adult Head    68.6 Adult Eye    35.925 Adult Brain    107.1 Adult Thoracic-Abdominal Ganglion    86.3 Adult Crop    69.8 Adult Midgut    267.8 Adult Hindgut    79.3 Adult Malpighian Tubules    63.2 Adult Fat Body    134.3 Adult Salivary Gland    49.5 Adult Heart    248.425 Adult VirginFemale Spermatheca    68.1 Adult InseminatedFemale Spermatheca    47.8 Adult Ovary    173.4 Adult Testis    23.7 Adult Male Accessory Gland    16.7 Adult Carcass    58 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    79.575 Larval Midgut    110.2 Larval Hindgut    90 Larval Malpighian Tubules    30 Larval Fat Body    101.8 Larval Salivary Gland    65.4 Larval Trachea    53.8 Larval Carcass    69.65 Adult Head    68.6 Adult Eye    35.925 Adult Brain    107.1 Adult Thoracic-Abdominal Ganglion    86.3 Adult Crop    69.8 Adult Midgut    267.8 Adult Hindgut    79.3 Adult Malpighian Tubules    63.2 Adult Fat Body    134.3 Adult Salivary Gland    49.5 Adult Heart    248.425 Adult VirginFemale Spermatheca    68.1 Adult InseminatedFemale Spermatheca    47.8 Adult Ovary    173.4 Adult Testis    23.7 Adult Male Accessory Gland    16.7 Adult Carcass    58 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    79.575 Larval Midgut    110.2 Larval Hindgut    90 Larval Malpighian Tubules    30 Larval Fat Body    101.8 Larval Salivary Gland    65.4 Larval Trachea    53.8 Larval Carcass    69.65 Adult Head    68.6 Adult Eye    35.925 Adult Brain    107.1 Adult Thoracic-Abdominal Ganglion    86.3 Adult Crop    69.8 Adult Midgut    267.8 Adult Hindgut    79.3 Adult Malpighian Tubules    63.2 Adult Fat Body    134.3 Adult Salivary Gland    49.5 Adult Heart    248.425 Adult VirginFemale Spermatheca    68.1 Adult InseminatedFemale Spermatheca    47.8 Adult Ovary    173.4 Adult Testis    23.7 Adult Male Accessory Gland    16.7 Adult Carcass    58 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    79.575 Larval Midgut    110.2 Larval Hindgut    90 Larval Malpighian Tubules    30 Larval Fat Body    101.8 Larval Salivary Gland    65.4 Larval Trachea    53.8 Larval Carcass    69.65 Adult Head    68.6 Adult Eye    35.925 Adult Brain    107.1 Adult Thoracic-Abdominal Ganglion    86.3 Adult Crop    69.8 Adult Midgut    267.8 Adult Hindgut    79.3 Adult Malpighian Tubules    63.2 Adult Fat Body    134.3 Adult Salivary Gland    49.5 Adult Heart    248.425 Adult VirginFemale Spermatheca    68.1 Adult InseminatedFemale Spermatheca    47.8 Adult Ovary    173.4 Adult Testis    23.7 Adult Male Accessory Gland    16.7 Adult Carcass    58 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    79.575 Larval Midgut    110.2 Larval Hindgut    90 Larval Malpighian Tubules    30 Larval Fat Body    101.8 Larval Salivary Gland    65.4 Larval Trachea    53.8 Larval Carcass    69.65 Adult Head    68.6 Adult Eye    35.925 Adult Brain    107.1 Adult Thoracic-Abdominal Ganglion    86.3 Adult Crop    69.8 Adult Midgut    267.8 Adult Hindgut    79.3 Adult Malpighian Tubules    63.2 Adult Fat Body    134.3 Adult Salivary Gland    49.5 Adult Heart    248.425 Adult VirginFemale Spermatheca    68.1 Adult InseminatedFemale Spermatheca    47.8 Adult Ovary    173.4 Adult Testis    23.7 Adult Male Accessory Gland    16.7 Adult Carcass    58 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    79.575 Larval Midgut    110.2 Larval Hindgut    90 Larval Malpighian Tubules    30 Larval Fat Body    101.8 Larval Salivary Gland    65.4 Larval Trachea    53.8 Larval Carcass    69.65 Adult Head    68.6 Adult Eye    35.925 Adult Brain    107.1 Adult Thoracic-Abdominal Ganglion    86.3 Adult Crop    69.8 Adult Midgut    267.8 Adult Hindgut    79.3 Adult Malpighian Tubules    63.2 Adult Fat Body    134.3 Adult Salivary Gland    49.5 Adult Heart    248.425 Adult VirginFemale Spermatheca    68.1 Adult InseminatedFemale Spermatheca    47.8 Adult Ovary    173.4 Adult Testis    23.7 Adult Male Accessory Gland    16.7 Adult Carcass    58 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    79.575 Larval Midgut    110.2 Larval Hindgut    90 Larval Malpighian Tubules    30 Larval Fat Body    101.8 Larval Salivary Gland    65.4 Larval Trachea    53.8 Larval Carcass    69.65 Adult Head    68.6 Adult Eye    35.925 Adult Brain    107.1 Adult Thoracic-Abdominal Ganglion    86.3 Adult Crop    69.8 Adult Midgut    267.8 Adult Hindgut    79.3 Adult Malpighian Tubules    63.2 Adult Fat Body    134.3 Adult Salivary Gland    49.5 Adult Heart    248.425 Adult VirginFemale Spermatheca    68.1 Adult InseminatedFemale Spermatheca    47.8 Adult Ovary    173.4 Adult Testis    23.7 Adult Male Accessory Gland    16.7 Adult Carcass    58 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    79.575 Larval Midgut    110.2 Larval Hindgut    90 Larval Malpighian Tubules    30 Larval Fat Body    101.8 Larval Salivary Gland    65.4 Larval Trachea    53.8 Larval Carcass    69.65 Adult Head    68.6 Adult Eye    35.925 Adult Brain    107.1 Adult Thoracic-Abdominal Ganglion    86.3 Adult Crop    69.8 Adult Midgut    267.8 Adult Hindgut    79.3 Adult Malpighian Tubules    63.2 Adult Fat Body    134.3 Adult Salivary Gland    49.5 Adult Heart    248.425 Adult VirginFemale Spermatheca    68.1 Adult InseminatedFemale Spermatheca    47.8 Adult Ovary    173.4 Adult Testis    23.7 Adult Male Accessory Gland    16.7 Adult Carcass    58 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    68.6   NA  Eye    35.925   NA  Brain    107.1   79.575  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    86.3   NA  Crop    69.8   110.2  Midgut    267.8   90  Hindgut    79.3   30  Malpighian Tubules    63.2   101.8  Fat Body    134.3   65.4  Salivary Gland    49.5   NA  Heart    248.425   53.8  Trachea    NA   NA  VirginFemale Spermatheca    68.1   NA  InseminatedFemale Spermatheca    47.8   NA  Ovary    173.4   NA  Testis    23.7   NA  Male Accessory Gland    no informative data   69.65  Carcass    58 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    11 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    8 head, mated 4-day male    11 head, mated 20-day male    11 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    14 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering    7 fat body, white prepupae    7 fat body, pupae P8    21 carcass, larvae L3 wandering    6 carcass, 1-day adult    5 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female    21 ovary, mated 4-day female    17 testis, mated 4-day male    3 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    11 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    8 head, mated 4-day male    11 head, mated 20-day male    11 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    14 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering    7 fat body, white prepupae    7 fat body, pupae P8    21 carcass, larvae L3 wandering    6 carcass, 1-day adult    5 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female    21 ovary, mated 4-day female    17 testis, mated 4-day male    3 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    11 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    8 head, mated 4-day male    11 head, mated 20-day male    11 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    14 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering    7 fat body, white prepupae    7 fat body, pupae P8    21 carcass, larvae L3 wandering    6 carcass, 1-day adult    5 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female    21 ovary, mated 4-day female    17 testis, mated 4-day male    3 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    11 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    8 head, mated 4-day male    11 head, mated 20-day male    11 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    14 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering    7 fat body, white prepupae    7 fat body, pupae P8    21 carcass, larvae L3 wandering    6 carcass, 1-day adult    5 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female    21 ovary, mated 4-day female    17 testis, mated 4-day male    3 accessory gland, mated 4-day male    1 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    11 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    8 head, mated 4-day male    11 head, mated 20-day male    11 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    14 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering    7 fat body, white prepupae    7 fat body, pupae P8    21 carcass, larvae L3 wandering    6 carcass, 1-day adult    5 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female    21 ovary, mated 4-day female    17 testis, mated 4-day male    3 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    11 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    8 head, mated 4-day male    11 head, mated 20-day male    11 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    14 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering    7 fat body, white prepupae    7 fat body, pupae P8    21 carcass, larvae L3 wandering    6 carcass, 1-day adult    5 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female    21 ovary, mated 4-day female    17 testis, mated 4-day male    3 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    11 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    8 head, mated 4-day male    11 head, mated 20-day male    11 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    14 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering    7 fat body, white prepupae    7 fat body, pupae P8    21 carcass, larvae L3 wandering    6 carcass, 1-day adult    5 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female    21 ovary, mated 4-day female    17 testis, mated 4-day male    3 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    6 central nervous system, larvae L3    6 central nervous system, pupae P8    11 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    9 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    8 head, mated 4-day male    11 head, mated 20-day male    11 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    14 digestive system, 4-day adult    16 digestive system, 20-day adult    12 fat body, larvae L3 wandering    7 fat body, white prepupae    7 fat body, pupae P8    21 carcass, larvae L3 wandering    6 carcass, 1-day adult    5 carcass, 4-day adult    8 carcass, 20-day adult    8 ovary, virgin 4-day female    21 ovary, mated 4-day female    17 testis, mated 4-day male    3 accessory gland, mated 4-day male    1 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 18-24 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    1 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    5 embryo 12-14hr    6 embryo 14-16hr    7 embryo 16-18hr    8 embryo 18-20hr    9 embryo 20-22hr    19 embryo 22-24hr    20 larva L1    15 larva L2    14 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new    8 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    13 pupae 3d postWPP    8 pupae 4d postWPP    10 adult male 01day    10 adult male 05day    9 adult male 30day    8 adult female 01day    14 adult female 05day    17 adult female 30day    17 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    1 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    5 embryo 12-14hr    6 embryo 14-16hr    7 embryo 16-18hr    8 embryo 18-20hr    9 embryo 20-22hr    19 embryo 22-24hr    20 larva L1    15 larva L2    14 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new    8 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    13 pupae 3d postWPP    8 pupae 4d postWPP    10 adult male 01day    10 adult male 05day    9 adult male 30day    8 adult female 01day    14 adult female 05day    17 adult female 30day    17 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    1 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    5 embryo 12-14hr    6 embryo 14-16hr    7 embryo 16-18hr    8 embryo 18-20hr    9 embryo 20-22hr    19 embryo 22-24hr    20 larva L1    15 larva L2    14 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new    8 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    13 pupae 3d postWPP    8 pupae 4d postWPP    10 adult male 01day    10 adult male 05day    9 adult male 30day    8 adult female 01day    14 adult female 05day    17 adult female 30day    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    1 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    5 embryo 12-14hr    6 embryo 14-16hr    7 embryo 16-18hr    8 embryo 18-20hr    9 embryo 20-22hr    19 embryo 22-24hr    20 larva L1    15 larva L2    14 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new    8 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    13 pupae 3d postWPP    8 pupae 4d postWPP    10 adult male 01day    10 adult male 05day    9 adult male 30day    8 adult female 01day    14 adult female 05day    17 adult female 30day    17 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    1 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    5 embryo 12-14hr    6 embryo 14-16hr    7 embryo 16-18hr    8 embryo 18-20hr    9 embryo 20-22hr    19 embryo 22-24hr    20 larva L1    15 larva L2    14 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new    8 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    13 pupae 3d postWPP    8 pupae 4d postWPP    10 adult male 01day    10 adult male 05day    9 adult male 30day    8 adult female 01day    14 adult female 05day    17 adult female 30day    17 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    1 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    5 embryo 12-14hr    6 embryo 14-16hr    7 embryo 16-18hr    8 embryo 18-20hr    9 embryo 20-22hr    19 embryo 22-24hr    20 larva L1    15 larva L2    14 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new    8 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    13 pupae 3d postWPP    8 pupae 4d postWPP    10 adult male 01day    10 adult male 05day    9 adult male 30day    8 adult female 01day    14 adult female 05day    17 adult female 30day    17 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    1 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    5 embryo 12-14hr    6 embryo 14-16hr    7 embryo 16-18hr    8 embryo 18-20hr    9 embryo 20-22hr    19 embryo 22-24hr    20 larva L1    15 larva L2    14 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new    8 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    13 pupae 3d postWPP    8 pupae 4d postWPP    10 adult male 01day    10 adult male 05day    9 adult male 30day    8 adult female 01day    14 adult female 05day    17 adult female 30day    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    16 embryo 02-04hr    1 embryo 04-06hr    3 embryo 06-08hr    4 embryo 08-10hr    4 embryo 10-12hr    5 embryo 12-14hr    6 embryo 14-16hr    7 embryo 16-18hr    8 embryo 18-20hr    9 embryo 20-22hr    19 embryo 22-24hr    20 larva L1    15 larva L2    14 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new    8 white prepupae 12hr    11 white prepupae 24hr    10 pupae 2d postWPP    13 pupae 3d postWPP    8 pupae 4d postWPP    10 adult male 01day    10 adult male 05day    9 adult male 30day    8 adult female 01day    14 adult female 05day    17 adult female 30day    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    15 Schneider line 2 Sg4    9 embryonic 1182-4H    8 embryonic GM2    10 embryonic Kc167    13 embryonic S1    10 embryonic S3    9 leg disc CME L1    7 wing disc CME-W2    16 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    11 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    35 mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    37 tumorous blood cells mbn2    11 ovary fGS/OSS    6 ovary OSC    7 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    15 Schneider line 2 Sg4    9 embryonic 1182-4H    8 embryonic GM2    10 embryonic Kc167    13 embryonic S1    10 embryonic S3    9 leg disc CME L1    7 wing disc CME-W2    16 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    11 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5  (35) mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2  (37) tumorous blood cells mbn2    11 ovary fGS/OSS    6 ovary OSC    7 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    15 Schneider line 2 Sg4    9 embryonic 1182-4H    8 embryonic GM2    10 embryonic Kc167    13 embryonic S1    10 embryonic S3    9 leg disc CME L1    7 wing disc CME-W2    16 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    11 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    35 mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    37 tumorous blood cells mbn2    11 ovary fGS/OSS    6 ovary OSC    7 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    15 Schneider line 2 Sg4    9 embryonic 1182-4H    8 embryonic GM2    10 embryonic Kc167    13 embryonic S1    10 embryonic S3    9 leg disc CME L1    7 wing disc CME-W2    16 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    11 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    35 mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    37 tumorous blood cells mbn2    11 ovary fGS/OSS    6 ovary OSC    7 ovary OSS    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    15 Schneider line 2 Sg4    9 embryonic 1182-4H    8 embryonic GM2    10 embryonic Kc167    13 embryonic S1    10 embryonic S3    9 leg disc CME L1    7 wing disc CME-W2    16 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    11 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    35 mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    37 tumorous blood cells mbn2    11 ovary fGS/OSS    6 ovary OSC    7 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    15 Schneider line 2 Sg4    9 embryonic 1182-4H    8 embryonic GM2    10 embryonic Kc167    13 embryonic S1    10 embryonic S3    9 leg disc CME L1    7 wing disc CME-W2    16 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    11 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5  (35) mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2  (37) tumorous blood cells mbn2    11 ovary fGS/OSS    6 ovary OSC    7 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    15 Schneider line 2 Sg4    9 embryonic 1182-4H    8 embryonic GM2    10 embryonic Kc167    13 embryonic S1    10 embryonic S3    9 leg disc CME L1    7 wing disc CME-W2    16 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    11 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    35 mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    37 tumorous blood cells mbn2    11 ovary fGS/OSS    6 ovary OSC    7 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    15 Schneider line 2 Sg4    9 embryonic 1182-4H    8 embryonic GM2    10 embryonic Kc167    13 embryonic S1    10 embryonic S3    9 leg disc CME L1    7 wing disc CME-W2    16 wing disc ML-DmD8    9 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    11 wing disc ML-DmD32    7 haltere disc ML-DmD17-c3    11 eye-antennal disc ML-DmD11    19 antennal disc ML-DmD20-c5    35 mixed discs ML-DmD4-c1    13 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    37 tumorous blood cells mbn2    11 ovary fGS/OSS    6 ovary OSC    7 ovary OSS    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    2 cold shock, 4-day adult    2 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    6 Cadmium 50 mM 12 hrs, larvae L3    10 Cadmium 50 mM 48 hrs, 4-day adult    10 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    13 Ethanol 2.5% 3 hrs, larvae L3    12 Ethanol 5% 3 hrs, larvae L3    8 Ethanol 10% 3 hrs, larvae L3    8 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    11 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    12 Paraquat 10 mM 48 hrs, 4-day adult    10 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_10 mE1_20_mRNA_expression_cluster_14
External Data & Images
Linkouts	BDGP expression data • RE56531 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027538 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8536-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for β4GalNAcTA Stages(s) 1-3 Stages(s) 4-6
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable β4GalNAcTA4.1 viable, with Scer\GAL4[-]: β4GalNAcTAEP2551 viable, with Scer\GAL4pnr-MD237 β4GalNAcTAGD1991 Sterility Allele fertile, with Scer\GAL4[-]: β4GalNAcTAEP2551 Other Phenotypes Allele bang sensitive β4GalNAcTA4.1 locomotor behavior defective β4GalNAcTA4.1 locomotor behavior defective | third instar larval stage β4GalNAcTA4.1 locomotor behavior defective | third instar larval stage (with Df(2R)β4GalNAcTA20.1) β4GalNAcTA4.1 neuroanatomy defective β4GalNAcTA4.1 neuroanatomy defective (with Df(2R)β4GalNAcTA20.1) β4GalNAcTA4.1 neurophysiology defective β4GalNAcTA4.1 neurophysiology defective (with Df(2R)β4GalNAcTA20.1) β4GalNAcTA4.1 sleep defective β4GalNAcTABG02565 Phenotype manifest in Allele A1-7 ventral longitudinal muscle 3 β4GalNAcTA4.1 A1-7 ventral longitudinal muscle 3 (with Df(2R)β4GalNAcTA20.1) β4GalNAcTA4.1 A1-7 ventral longitudinal muscle 4 β4GalNAcTA4.1 A1-7 ventral longitudinal muscle 4 (with Df(2R)β4GalNAcTA20.1) β4GalNAcTA4.1 embryonic/larval neuromuscular junction β4GalNAcTA4.1 embryonic/larval neuromuscular junction (with Df(2R)β4GalNAcTA20.1) β4GalNAcTA4.1 NMJ bouton β4GalNAcTA4.1 NMJ bouton (with Df(2R)β4GalNAcTA20.1) β4GalNAcTA4.1 sarcomere & abdominal ventral longitudinal muscle 3 (with Df(2R)β4GalNAcTA20.1) β4GalNAcTA4.1 sarcomere & abdominal ventral longitudinal muscle 4 (with Df(2R)β4GalNAcTA20.1) β4GalNAcTA4.1
Classical Alleles ( 8 )
For All Classical Alleles Show
Allele of β4GalNAcTA Class Mutagen Stocks Known lesion β4GalNAcTA4.1 Delta2-3 1 Yes β4GalNAcTA5-HA-1228 1 -- β4GalNAcTAKG01410 1 -- β4GalNAcTA7.1 Delta2-3 0 Yes β4GalNAcTABG01830 P-element activity 0 -- β4GalNAcTABG02565 P-element activity 0 -- β4GalNAcTAEP2551 P-element activity 0 Yes β4GalNAcTAf00790 piggyBac transposase 0 --
Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Allele of β4GalNAcTA Class Mutagen Stocks Known lesion β4GalNAcTAGD1991 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes β4GalNAcTAScer\UAS.cIa in vitro construct - regulatory fusion 2 Yes β4GalNAcTAKK101459 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes β4GalNAcTA+t2.4 in vitro construct - genomic fragment 0 Yes β4GalNAcTAMtnA.T:SV5\V5,T:Zzzz\His6 in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel7131 (Ryder, 2004.4.26) Df(2R)β4GalNAcTA20.1 (Haines and Irvine, 2005)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data characterization construct P{β4GalNAcTA+t2.4} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}β4GalNAcTAEP2551 NA miscellaneous insertions P{GT1}β4GalNAcTABG01830 NA P{GT1}β4GalNAcTABG02565 NA P{RS5}β4GalNAcTA5-HA-1228 NA P{SUPor-P}β4GalNAcTAKG01410 NA PBac{WH}β4GalNAcTAf00790 NA
Gene Ontology: Function, Process & Cellular Component ( 9 unique terms )
Terms Based on Experimental Evidence ( 8 terms )
Molecular Function
CV term Evidence References
acetylgalactosaminyltransferase activity inferred from direct assay (Haines and Irvine, 2005) N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity inferred from direct assay (Johswich et al., 2009)
Biological Process
CV term Evidence References
adult locomotory behavior inferred from mutant phenotype (Haines and Irvine, 2005) glycolipid biosynthetic process inferred from direct assay (Johswich et al., 2009) N-acetylglucosamine metabolic process inferred from direct assay (Haines and Irvine, 2005) neuromuscular junction development inferred from mutant phenotype (Haines and Stewart, 2007) sperm individualization inferred from mutant phenotype (Haines and Irvine, 2004)
Cellular Component
CV term Evidence References
Golgi apparatus inferred from direct assay (Johswich et al., 2009)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
carbohydrate metabolic process inferred from electronic annotation with InterPro:IPR003859 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions β4GalNAcTA allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0027538
Orthologs
OrthoDB Orthologs (107) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6HT9C6 Dipteran inclusive ortholog search EOG6X0N2B Insect inclusive ortholog search EOG6RV1N0 Arthropod inclusive ortholog search EOG62JM72 Metazoa inclusive ortholog search EOG6T7MX1
Orthologs in Drosophila Species (EOG6HT9C6)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\β4GalNAcTA     Drosophila simulans   Dsim\GD11035 Y   Drosophila sechellia   Dsec\GM21525 Y   Drosophila erecta   Dere\GG20439 Y   Drosophila yakuba   Dyak\GE13570 Y   Drosophila ananassae   Dana\GF13490 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA21145 Y   Drosophila persimilis   Dper\GL10126 Y   Drosophila willistoni   Dwil\GK20782 Y   Drosophila virilis   Dvir\GJ22392 Y   Drosophila mojavensis   Dmoj\GI20541 Y   Drosophila grimshawi   Dgri\GH21793 Y
Orthologs in non-Drosophila Dipterans (EOG6X0N2B)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL012002   Aedes aegypti Yellow fever mosquito  Aaeg\AAEL005302   Anopheles gambiae Malaria mosquito  Agam\AGAP004781   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ014764
Orthologs in non-Dipteran Insects (EOG6RV1N0)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB42231 Y Apis mellifera Western honey bee  Amel\GB55998 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG002570 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG003694 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH25486 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH19363 Y Atta cephalotes Leafcutter ant  Acep\ACEP12508 Y Atta cephalotes Leafcutter ant  Acep\ACEP23449 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO14118 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO16899 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL22742 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14642 Y Linepithema humile Argentine ant  Lhum\LH15769 Y Linepithema humile Argentine ant  Lhum\LH21953 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB20052 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB15193 Y Solenopsis invicta Red fire ant  Sinv\SINV15333 Y Solenopsis invicta Red fire ant  Sinv\SINV15440 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI002137 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI006328 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI064230 Y Bombyx mori Silkmoth  Bmor\BGIBMGA008522 Y Bombyx mori Silkmoth  Bmor\BGIBMGA007485 Y Pediculus humanus Human body louse  Phum\PHUM125800 Y Pediculus humanus Human body louse  Phum\PHUM256250 Y Tribolium castaneum Red flour beetle  Tcas\TC006987 Y Tribolium castaneum Red flour beetle  Tcas\TC006388 Y
Orthologs in non-Insect Arthropods (EOG62JM72)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_322293 Y Daphnia pulex Water flea  Dpux\JGI_V11_60154 Y Daphnia pulex Water flea  Dpux\aphA7 Y Daphnia pulex Water flea  Dpux\Asf1a Y Daphnia pulex Water flea  Dpux\JGI_V11_71282 Y Daphnia pulex Water flea  Dpux\JGI_V11_301777 Y Daphnia pulex Water flea  Dpux\JGI_V11_308590 Y Daphnia pulex Water flea  Dpux\COI Y Daphnia pulex Water flea  Dpux\JGI_V11_61044 Y Ixodes scapularis Deer tick  Isca\ISCW004365 Y Ixodes scapularis Deer tick  Isca\ISCW004931 Y
Orthologs in non-Arthropod Metazoa (EOG6T7MX1)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\W02B12.11 Y Caenorhabditis elegans Nematode  Cele\bre-4 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_009773gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_024298gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_021359gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_021360gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_020850gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_010686gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_002887gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_019192gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_007019gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_015831gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_025145gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_024837gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_008080gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_016569gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_027923gn Y Danio rerio Zebrafish  Drer\BX323050.1 Y Danio rerio Zebrafish  Drer\b4galt6 Y Danio rerio Zebrafish  Drer\b4galt2 Y Danio rerio Zebrafish  Drer\b4galt4 Y Danio rerio Zebrafish  Drer\b4galt5 Y Danio rerio Zebrafish  Drer\zgc:154116 Y Danio rerio Zebrafish  Drer\si:dkey-199f5.8 Y Xenopus tropicalis Western clawed frog  Xtro\b4galt1.2 Y Xenopus tropicalis Western clawed frog  Xtro\b4galt2 Y Xenopus tropicalis Western clawed frog  Xtro\b4galt1.1 Y Xenopus tropicalis Western clawed frog  Xtro\b4galt5 Y Xenopus tropicalis Western clawed frog  Xtro\b4galt3 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000006440 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000023017 Y Xenopus tropicalis Western clawed frog  Xtro\b4galt6 Y Xenopus tropicalis Western clawed frog  Xtro\b4galt4 Y Gallus gallus Domestic chicken  Ggal\B4GALT5 Y Gallus gallus Domestic chicken  Ggal\B4GALT1 Y Gallus gallus Domestic chicken  Ggal\B4GALT3 Y Gallus gallus Domestic chicken  Ggal\B4GALT4 Y Gallus gallus Domestic chicken  Ggal\B4GALT6 Y Gallus gallus Domestic chicken  Ggal\B4GALT2 Y Mus musculus House mouse  Mmus\B4galt5 Y Mus musculus House mouse  Mmus\B4galt1 Y Mus musculus House mouse  Mmus\B4galt6 Y Rattus norvegicus Norway rat  Rnor\B4galt4 Y Rattus norvegicus Norway rat  Rnor\B4galt3 Y Rattus norvegicus Norway rat  Rnor\B4galt6 Y Rattus norvegicus Norway rat  Rnor\B4galt1 Y Rattus norvegicus Norway rat  Rnor\B4galt2 Y Homo sapiens Human  Hsap\ENSG00000117411 Y Homo sapiens Human  Hsap\B4GALT3 Y Homo sapiens Human  Hsap\B4GALT5 Y Homo sapiens Human  Hsap\B4GALT4 Y Homo sapiens Human  Hsap\B4GALT6 Y Homo sapiens Human  Hsap\B4GALT1 Y
Human Orthologs (6)
Gene OMIM HGNC Hsap\ENSG00000117411     Hsap\B4GALT3     Hsap\B4GALT5     Hsap\B4GALT4     Hsap\B4GALT6     Hsap\B4GALT1
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD11035 Drosophila sechellia Dsec\GM21525 Drosophila erecta Dere\GG20439 Drosophila yakuba Dyak\GE13570 Drosophila ananassae Dana\GF13490 Drosophila pseudoobscura pseudoobscura Dpse\GA21145 Drosophila persimilis Dper\GL10126 Drosophila willistoni Dwil\GK20782 Drosophila virilis Dvir\GJ22392 Drosophila mojavensis Dmoj\GI20541 Drosophila grimshawi Dgri\GH21793
Stocks & Reagents
Stocks Listed in FlyBase ( 8 )
Bloomington	9894 w*; P{UAS-β4GalNAcTA.I}1.2 9379 w*; β4GalNAcTA4.1/CyO 9895 y1 w*; P{UAS-beta4GalNAcTA.I}1.4 13722 y1 w67c23; P{SUPor-P}β4GalNAcTAKG01410
Kyoto	125154 w1118; P{RS5}β4GalNAcTA5-HA-1228
VDRC	v103579 P{KK101459}VIE-260B v4867 w1118; P{GD1991}v4867 v4869 w1118; P{GD1991}v4869
Genomic Clones ( 2 )
	BACR16C17 BACR30O03 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 13 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH13356 RE56531
Other clones	DPiM_GH13356
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LD02648 LD39015 RE05408 SD02351 SD02414
Other clones	214473.34 Dmel_dig_012125_0668_2478 EK053302 EP19645 SD05469
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0027538 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36585
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: β4GalNAcTA anon-WO0118547.128 (FlyBase, 1996-)
Additional comments	Source for merge of β4GalNAcTA anon-WO0118547.128 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	Area matching Drosophila EST AA202366. Probable intron in gene represented by EST AA202366. (Davies, 2001.3.15)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_137102 RefSeq (Proteins) • NP_610946 DDBJ / EMBL / GenBank • AA202366 AAD34746 AAF58268 AAM12262 AF132158 AI135553 AI513247 AX094004 AY095531 BI370121 CZ483270 CZ483271 Entrez Gene - A searchable database of RefSeq genes. • 36585 UniProtKB/TrEMBL • Q7KN92
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Galactosyltransferase, metazoa (IPR003859) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE56531
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0027538 DRSC - Results from RNAi screens. • FBgn0027538 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027538 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8536-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0027538 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 36585 modMine - Data generated by the modENCODE project. • FBgn0027538
Synonyms & Secondary IDs ( 13 )
Reported As
Symbol Synonym	anon-WO0118547.128   b4GalNAcTA (Haines and Stewart, 2007, Jumbo-Lucioni et al., 2010) BcDNA:GH13356 (Inlow and Restifo, 2004, ) beta4GalNacTA (Swanson et al., 2009) beta4GalNAcTA (Cook, 2007.1.23, Levis et al., 2011.12.16) CG8536 (Haines and Irvine, 2005, Haines and Irvine, 2004, Kim et al., 2002, Chen et al., 2007, Keleman et al., 2009.8.5, Johswich et al., 2009, Ramakrishnan and Qasba, 2007) DmGalT (Viswanathan et al., 2006) dβ4GalTA (Takemae et al., 2003) β4GalNAcT1 (Ramakrishnan and Qasba, 2007) β4GalNAcTA (Harbison and Sehgal, 2008, Xu et al., 2007, Sasaki et al., 2007, Fernandes and Rao, 2011, Chen et al., 2007, Johswich et al., 2009, Stolz et al., 2008, Nakamura et al., 2012) β4Gal-NAcTA (Haines and Stewart, 2007) β4GalTA
Name Synonym	β1,4-N-acetylgalactosaminyltransferase (Sasaki et al., 2007) β4GalNAcTA
Secondary FlyBase IDs
	FBgn0062226
References ( 40 )
Generate a list of	All references relating to this gene ( 40 )
List References by type	Research paper  ( 18 ) Supplementary material  ( 3 ) Personal communication to FlyBase  ( 9 ) Abstract  ( 2 ) FlyBase analysis  ( 3 ) Patent  ( 1 ) DNA/RNA sequence record  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 3 )
	Nakamura et al., 2012, G3 (Bethesda) 2(6): 653--656 Genetic Interactions Between Drosophila sialyltransferase and β1,4-N-acetylgalactosaminyltransferase-A Genes Indicate Their Involvement in the Same Pathway. [FBrf0218545] Fernandes and Rao, 2011, Mol. Brain 4(1): 17 Genome-wide screen for modifiers of Parkinson's disease genes in Drosophila. [FBrf0213658] Kraft et al., 2011, Cell. Molec. Life Sci. 68(24): 4091--4100 "Add-on" domains of Drosophila β1,4-N-acetylgalactosaminyltransferase B in the stem region and its pilot protein. [FBrf0216778] Show all research papers ...