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Gene Dmel\CG1927

General Information
Symbol	Dmel\CG1927	Species	D. melanogaster
Name		Annotation symbol	CG1927
Feature type	protein_coding_gene	FlyBase ID	FBgn0027547
Gene Model Status	Current	Stock availability	8 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	62B12-62B12	Sequence location	3L:1,966,725..1,970,079 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG1927 (FBgn0027547). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 9 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 18-24 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, larval/adult midgut, adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval trachea, virgin spermatheca, adult male accessory gland, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, larval hindgut, adult fat body, larval/adult salivary gland, adult female reproductive system, adult testis, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1638120_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG1927. Gene sequence location is 3L:1966725..1970079.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 62B12-62B12   Limits computationally determined from genome sequence between P{PZ}dlt04276 and P{PZ}slsrL182
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG1927 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46 Low-frequency RNA-Seq exon junction(s) not annotated. Annotated transcripts do not represent all supported alternative splices within 5' UTR.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG1927-RA FBtr0072853  NM_139427   1198   213 CG1927-RB FBtr0333433  NM_001274373   744   210
Additional Transcript Data & Comments
Reported size (kB)	1.2 (longest cDNA) (Kasravi et al., 1999)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG1927-PA   FBpp0072732   24.5   213   7.87     NP_647684   AAF47601 CG1927-PB   FBpp0305624   24.2   210   7.56     NP_001261302   AGB93997
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA441115   AA803074   AE014296 AAF47601   AF145665 AAD38640   AE014296 AGB93997   AI114305   AI257531   AI402245   AI517810   AX094216   BG637138   BG641177   BH214644   BI165702   BI228508   BI231316   BI482011   BP552056   BP552790   CO179126   CO181522   CO187707   CO188691   CO262315   CO266224   CO273129   CO291937   CO305278   CO306280   CO313659   CO325020   CO330536   CO339074   CW848175   CZ489503   CZ489504   EC074870   EC077242   EC081924   EC195159   EC196623   EC212396   EC227887   EC229146   EC230296   EC244842   EC248570   EC258878   FD585625   FD585887   GH741314   GH768256   GH768621
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9Y107
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic/larval midgut   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, larval/adult midgut, adult hindgut, larval/adult Malpighian tubules, adult heart, larval fat body, larval trachea, virgin spermatheca, adult male accessory gland, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, larval hindgut, adult fat body, larval/adult salivary gland, adult female reproductive system, adult testis, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    251.625 Larval Midgut    974.2 Larval Hindgut    457.2 Larval Malpighian Tubules    745.8 Larval Fat Body    952.1 Larval Salivary Gland    258.3 Larval Trachea    630 Larval Carcass    421.95 Adult Head    808.7 Adult Eye    916.825 Adult Brain    390.4 Adult Thoracic-Abdominal Ganglion    361.5 Adult Crop    1046.1 Adult Midgut    1162.8 Adult Hindgut    811.7 Adult Malpighian Tubules    1281.3 Adult Fat Body    434 Adult Salivary Gland    372.4 Adult Heart    569.975 Adult VirginFemale Spermatheca    521.8 Adult InseminatedFemale Spermatheca    455.2 Adult Ovary    364.5 Adult Testis    118.3 Adult Male Accessory Gland    746.1 Adult Carcass    516 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    251.625 Larval Midgut  (974.2) Larval Hindgut    457.2 Larval Malpighian Tubules  (745.8) Larval Fat Body  (952.1) Larval Salivary Gland    258.3 Larval Trachea  (630) Larval Carcass    421.95 Adult Head  (808.7) Adult Eye  (916.825) Adult Brain    390.4 Adult Thoracic-Abdominal Ganglion    361.5 Adult Crop  (1046.1) Adult Midgut  (1162.8) Adult Hindgut  (811.7) Adult Malpighian Tubules  (1281.3) Adult Fat Body    434 Adult Salivary Gland    372.4 Adult Heart  (569.975) Adult VirginFemale Spermatheca  521.8 Adult InseminatedFemale Spermatheca    455.2 Adult Ovary    364.5 Adult Testis    118.3 Adult Male Accessory Gland  (746.1) Adult Carcass  516 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    251.625 Larval Midgut    974.2 Larval Hindgut    457.2 Larval Malpighian Tubules    745.8 Larval Fat Body    952.1 Larval Salivary Gland    258.3 Larval Trachea    630 Larval Carcass    421.95 Adult Head    808.7 Adult Eye    916.825 Adult Brain    390.4 Adult Thoracic-Abdominal Ganglion    361.5 Adult Crop  1046.1 Adult Midgut  (1162.8) Adult Hindgut    811.7 Adult Malpighian Tubules  (1281.3) Adult Fat Body    434 Adult Salivary Gland    372.4 Adult Heart    569.975 Adult VirginFemale Spermatheca    521.8 Adult InseminatedFemale Spermatheca    455.2 Adult Ovary    364.5 Adult Testis    118.3 Adult Male Accessory Gland    746.1 Adult Carcass    516 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    251.625 Larval Midgut    974.2 Larval Hindgut    457.2 Larval Malpighian Tubules    745.8 Larval Fat Body    952.1 Larval Salivary Gland    258.3 Larval Trachea    630 Larval Carcass    421.95 Adult Head    808.7 Adult Eye    916.825 Adult Brain    390.4 Adult Thoracic-Abdominal Ganglion    361.5 Adult Crop    1046.1 Adult Midgut    1162.8 Adult Hindgut    811.7 Adult Malpighian Tubules    1281.3 Adult Fat Body    434 Adult Salivary Gland    372.4 Adult Heart    569.975 Adult VirginFemale Spermatheca    521.8 Adult InseminatedFemale Spermatheca    455.2 Adult Ovary    364.5 Adult Testis    118.3 Adult Male Accessory Gland    746.1 Adult Carcass    516 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    251.625 Larval Midgut    974.2 Larval Hindgut    457.2 Larval Malpighian Tubules    745.8 Larval Fat Body    952.1 Larval Salivary Gland    258.3 Larval Trachea    630 Larval Carcass    421.95 Adult Head    808.7 Adult Eye    916.825 Adult Brain    390.4 Adult Thoracic-Abdominal Ganglion    361.5 Adult Crop    1046.1 Adult Midgut    1162.8 Adult Hindgut    811.7 Adult Malpighian Tubules    1281.3 Adult Fat Body    434 Adult Salivary Gland    372.4 Adult Heart    569.975 Adult VirginFemale Spermatheca    521.8 Adult InseminatedFemale Spermatheca    455.2 Adult Ovary    364.5 Adult Testis    118.3 Adult Male Accessory Gland    746.1 Adult Carcass    516 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    251.625 Larval Midgut  (974.2) Larval Hindgut    457.2 Larval Malpighian Tubules  745.8 Larval Fat Body  (952.1) Larval Salivary Gland    258.3 Larval Trachea  630 Larval Carcass    421.95 Adult Head  808.7 Adult Eye  (916.825) Adult Brain    390.4 Adult Thoracic-Abdominal Ganglion    361.5 Adult Crop  (1046.1) Adult Midgut  (1162.8) Adult Hindgut  811.7 Adult Malpighian Tubules  (1281.3) Adult Fat Body    434 Adult Salivary Gland    372.4 Adult Heart  569.975 Adult VirginFemale Spermatheca  521.8 Adult InseminatedFemale Spermatheca    455.2 Adult Ovary    364.5 Adult Testis    118.3 Adult Male Accessory Gland  746.1 Adult Carcass  516 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    251.625 Larval Midgut    974.2 Larval Hindgut    457.2 Larval Malpighian Tubules    745.8 Larval Fat Body    952.1 Larval Salivary Gland    258.3 Larval Trachea    630 Larval Carcass    421.95 Adult Head    808.7 Adult Eye    916.825 Adult Brain    390.4 Adult Thoracic-Abdominal Ganglion    361.5 Adult Crop  1046.1 Adult Midgut  1162.8 Adult Hindgut    811.7 Adult Malpighian Tubules  1281.3 Adult Fat Body    434 Adult Salivary Gland    372.4 Adult Heart    569.975 Adult VirginFemale Spermatheca    521.8 Adult InseminatedFemale Spermatheca    455.2 Adult Ovary    364.5 Adult Testis    118.3 Adult Male Accessory Gland    746.1 Adult Carcass    516 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    251.625 Larval Midgut    974.2 Larval Hindgut    457.2 Larval Malpighian Tubules    745.8 Larval Fat Body    952.1 Larval Salivary Gland    258.3 Larval Trachea    630 Larval Carcass    421.95 Adult Head    808.7 Adult Eye    916.825 Adult Brain    390.4 Adult Thoracic-Abdominal Ganglion    361.5 Adult Crop    1046.1 Adult Midgut    1162.8 Adult Hindgut    811.7 Adult Malpighian Tubules    1281.3 Adult Fat Body    434 Adult Salivary Gland    372.4 Adult Heart    569.975 Adult VirginFemale Spermatheca    521.8 Adult InseminatedFemale Spermatheca    455.2 Adult Ovary    364.5 Adult Testis    118.3 Adult Male Accessory Gland    746.1 Adult Carcass    516 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    808.7   NA  Eye    916.825   NA  Brain    390.4   251.625  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    361.5   NA  Crop    1046.1   974.2  Midgut    1162.8   457.2  Hindgut    811.7   745.8  Malpighian Tubules    1281.3   952.1  Fat Body    434   258.3  Salivary Gland    372.4   NA  Heart    569.975   630  Trachea    NA   NA  VirginFemale Spermatheca    521.8   NA  InseminatedFemale Spermatheca    455.2   NA  Ovary    364.5   NA  Testis    118.3   NA  Male Accessory Gland    746.1   421.95  Carcass    516 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    37 central nervous system, larvae L3    15 central nervous system, pupae P8    17 head, virgin 1-day female    39 head, virgin 4-day female    42 head, virgin 20-day female    38 head, mated 1-day female    34 head, mated 4-day female    29 head, mated 20-day female    40 head, mated 1-day male    46 head, mated 4-day male    42 head, mated 20-day male    59 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    37 digestive system, 1-day adult    60 digestive system, 4-day adult    42 digestive system, 20-day adult    51 fat body, larvae L3 wandering    60 fat body, white prepupae    29 fat body, pupae P8    37 carcass, larvae L3 wandering    26 carcass, 1-day adult    27 carcass, 4-day adult    32 carcass, 20-day adult    36 ovary, virgin 4-day female    31 ovary, mated 4-day female    31 testis, mated 4-day male    17 accessory gland, mated 4-day male    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (37) central nervous system, larvae L3    15 central nervous system, pupae P8    17 head, virgin 1-day female  (39) head, virgin 4-day female  (42) head, virgin 20-day female  (38) head, mated 1-day female  (34) head, mated 4-day female  (29) head, mated 20-day female  (40) head, mated 1-day male  (46) head, mated 4-day male  (42) head, mated 20-day male  (59) salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    14 digestive system, larvae L3 wandering  (37) digestive system, 1-day adult  (60) digestive system, 4-day adult  (42) digestive system, 20-day adult  (51) fat body, larvae L3 wandering  (60) fat body, white prepupae  (29) fat body, pupae P8  (37) carcass, larvae L3 wandering  26 carcass, 1-day adult  (27) carcass, 4-day adult  (32) carcass, 20-day adult  (36) ovary, virgin 4-day female  (31) ovary, mated 4-day female  (31) testis, mated 4-day male    17 accessory gland, mated 4-day male  (31) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    37 central nervous system, larvae L3    15 central nervous system, pupae P8    17 head, virgin 1-day female    39 head, virgin 4-day female    42 head, virgin 20-day female    38 head, mated 1-day female    34 head, mated 4-day female    29 head, mated 20-day female    40 head, mated 1-day male    46 head, mated 4-day male    42 head, mated 20-day male    59 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    37 digestive system, 1-day adult    60 digestive system, 4-day adult    42 digestive system, 20-day adult    51 fat body, larvae L3 wandering    60 fat body, white prepupae    29 fat body, pupae P8    37 carcass, larvae L3 wandering    26 carcass, 1-day adult    27 carcass, 4-day adult    32 carcass, 20-day adult    36 ovary, virgin 4-day female    31 ovary, mated 4-day female    31 testis, mated 4-day male    17 accessory gland, mated 4-day male    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    37 central nervous system, larvae L3    15 central nervous system, pupae P8    17 head, virgin 1-day female    39 head, virgin 4-day female    42 head, virgin 20-day female    38 head, mated 1-day female    34 head, mated 4-day female    29 head, mated 20-day female    40 head, mated 1-day male    46 head, mated 4-day male    42 head, mated 20-day male    59 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    37 digestive system, 1-day adult    60 digestive system, 4-day adult    42 digestive system, 20-day adult    51 fat body, larvae L3 wandering    60 fat body, white prepupae    29 fat body, pupae P8    37 carcass, larvae L3 wandering    26 carcass, 1-day adult    27 carcass, 4-day adult    32 carcass, 20-day adult    36 ovary, virgin 4-day female    31 ovary, mated 4-day female    31 testis, mated 4-day male    17 accessory gland, mated 4-day male    31 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    37 central nervous system, larvae L3    15 central nervous system, pupae P8    17 head, virgin 1-day female    39 head, virgin 4-day female    42 head, virgin 20-day female    38 head, mated 1-day female    34 head, mated 4-day female    29 head, mated 20-day female    40 head, mated 1-day male    46 head, mated 4-day male    42 head, mated 20-day male    59 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    37 digestive system, 1-day adult    60 digestive system, 4-day adult    42 digestive system, 20-day adult    51 fat body, larvae L3 wandering    60 fat body, white prepupae    29 fat body, pupae P8    37 carcass, larvae L3 wandering    26 carcass, 1-day adult    27 carcass, 4-day adult    32 carcass, 20-day adult    36 ovary, virgin 4-day female    31 ovary, mated 4-day female    31 testis, mated 4-day male    17 accessory gland, mated 4-day male    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (37) central nervous system, larvae L3    15 central nervous system, pupae P8    17 head, virgin 1-day female  (39) head, virgin 4-day female  (42) head, virgin 20-day female  (38) head, mated 1-day female  (34) head, mated 4-day female  29 head, mated 20-day female  (40) head, mated 1-day male  (46) head, mated 4-day male  (42) head, mated 20-day male  (59) salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    14 digestive system, larvae L3 wandering  (37) digestive system, 1-day adult  (60) digestive system, 4-day adult  (42) digestive system, 20-day adult  (51) fat body, larvae L3 wandering  (60) fat body, white prepupae  29 fat body, pupae P8  (37) carcass, larvae L3 wandering  26 carcass, 1-day adult  27 carcass, 4-day adult  32 carcass, 20-day adult  (36) ovary, virgin 4-day female  31 ovary, mated 4-day female  31 testis, mated 4-day male    17 accessory gland, mated 4-day male  31 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    37 central nervous system, larvae L3    15 central nervous system, pupae P8    17 head, virgin 1-day female    39 head, virgin 4-day female    42 head, virgin 20-day female    38 head, mated 1-day female    34 head, mated 4-day female    29 head, mated 20-day female    40 head, mated 1-day male    46 head, mated 4-day male    42 head, mated 20-day male    59 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    37 digestive system, 1-day adult    60 digestive system, 4-day adult    42 digestive system, 20-day adult    51 fat body, larvae L3 wandering    60 fat body, white prepupae    29 fat body, pupae P8    37 carcass, larvae L3 wandering    26 carcass, 1-day adult    27 carcass, 4-day adult    32 carcass, 20-day adult    36 ovary, virgin 4-day female    31 ovary, mated 4-day female    31 testis, mated 4-day male    17 accessory gland, mated 4-day male    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    37 central nervous system, larvae L3    15 central nervous system, pupae P8    17 head, virgin 1-day female    39 head, virgin 4-day female    42 head, virgin 20-day female    38 head, mated 1-day female    34 head, mated 4-day female    29 head, mated 20-day female    40 head, mated 1-day male    46 head, mated 4-day male    42 head, mated 20-day male    59 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    14 digestive system, larvae L3 wandering    37 digestive system, 1-day adult    60 digestive system, 4-day adult    42 digestive system, 20-day adult    51 fat body, larvae L3 wandering    60 fat body, white prepupae    29 fat body, pupae P8    37 carcass, larvae L3 wandering    26 carcass, 1-day adult    27 carcass, 4-day adult    32 carcass, 20-day adult    36 ovary, virgin 4-day female    31 ovary, mated 4-day female    31 testis, mated 4-day male    17 accessory gland, mated 4-day male    31 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 18-24 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    73 embryo 02-04hr    65 embryo 04-06hr    16 embryo 06-08hr    13 embryo 08-10hr    20 embryo 10-12hr    37 embryo 12-14hr    57 embryo 14-16hr    108 embryo 16-18hr    119 embryo 18-20hr    111 embryo 20-22hr    127 embryo 22-24hr    141 larva L1    100 larva L2    97 larva L3 12hr old    95 larva L3 puffstage 1-2    114 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    56 white prepupae new    55 white prepupae 12hr    67 white prepupae 24hr    70 pupae 2d postWPP    99 pupae 3d postWPP    66 pupae 4d postWPP    72 adult male 01day    85 adult male 05day    95 adult male 30day    114 adult female 01day    82 adult female 05day    68 adult female 30day    71 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (73) embryo 02-04hr  (65) embryo 04-06hr    16 embryo 06-08hr    13 embryo 08-10hr    20 embryo 10-12hr  (37) embryo 12-14hr  (57) embryo 14-16hr  (108) embryo 16-18hr  (119) embryo 18-20hr  (111) embryo 20-22hr  (127) embryo 22-24hr  (141) larva L1  (100) larva L2  (97) larva L3 12hr old  (95) larva L3 puffstage 1-2  (114) larva L3 puffstage 3-6  (73) larva L3 puffstage 7-9  (56) white prepupae new  (55) white prepupae 12hr  (67) white prepupae 24hr  (70) pupae 2d postWPP  (99) pupae 3d postWPP  (66) pupae 4d postWPP  (72) adult male 01day  (85) adult male 05day  (95) adult male 30day  (114) adult female 01day  (82) adult female 05day  (68) adult female 30day  (71) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    73 embryo 02-04hr    65 embryo 04-06hr    16 embryo 06-08hr    13 embryo 08-10hr    20 embryo 10-12hr    37 embryo 12-14hr    57 embryo 14-16hr  (108) embryo 16-18hr  (119) embryo 18-20hr  (111) embryo 20-22hr  (127) embryo 22-24hr  (141) larva L1    100 larva L2    97 larva L3 12hr old    95 larva L3 puffstage 1-2  (114) larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    56 white prepupae new    55 white prepupae 12hr    67 white prepupae 24hr    70 pupae 2d postWPP    99 pupae 3d postWPP    66 pupae 4d postWPP    72 adult male 01day    85 adult male 05day    95 adult male 30day  (114) adult female 01day    82 adult female 05day    68 adult female 30day    71 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    73 embryo 02-04hr    65 embryo 04-06hr    16 embryo 06-08hr    13 embryo 08-10hr    20 embryo 10-12hr    37 embryo 12-14hr    57 embryo 14-16hr    108 embryo 16-18hr    119 embryo 18-20hr    111 embryo 20-22hr    127 embryo 22-24hr    141 larva L1    100 larva L2    97 larva L3 12hr old    95 larva L3 puffstage 1-2    114 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    56 white prepupae new    55 white prepupae 12hr    67 white prepupae 24hr    70 pupae 2d postWPP    99 pupae 3d postWPP    66 pupae 4d postWPP    72 adult male 01day    85 adult male 05day    95 adult male 30day    114 adult female 01day    82 adult female 05day    68 adult female 30day    71 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    73 embryo 02-04hr    65 embryo 04-06hr    16 embryo 06-08hr    13 embryo 08-10hr    20 embryo 10-12hr    37 embryo 12-14hr    57 embryo 14-16hr    108 embryo 16-18hr    119 embryo 18-20hr    111 embryo 20-22hr    127 embryo 22-24hr    141 larva L1    100 larva L2    97 larva L3 12hr old    95 larva L3 puffstage 1-2    114 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    56 white prepupae new    55 white prepupae 12hr    67 white prepupae 24hr    70 pupae 2d postWPP    99 pupae 3d postWPP    66 pupae 4d postWPP    72 adult male 01day    85 adult male 05day    95 adult male 30day    114 adult female 01day    82 adult female 05day    68 adult female 30day    71 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (73) embryo 02-04hr  (65) embryo 04-06hr    16 embryo 06-08hr    13 embryo 08-10hr    20 embryo 10-12hr  (37) embryo 12-14hr  (57) embryo 14-16hr  (108) embryo 16-18hr  (119) embryo 18-20hr  (111) embryo 20-22hr  (127) embryo 22-24hr  (141) larva L1  (100) larva L2  (97) larva L3 12hr old  (95) larva L3 puffstage 1-2  (114) larva L3 puffstage 3-6  (73) larva L3 puffstage 7-9  (56) white prepupae new  (55) white prepupae 12hr  (67) white prepupae 24hr  (70) pupae 2d postWPP  (99) pupae 3d postWPP  (66) pupae 4d postWPP  (72) adult male 01day  (85) adult male 05day  (95) adult male 30day  (114) adult female 01day  (82) adult female 05day  (68) adult female 30day  (71) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    73 embryo 02-04hr    65 embryo 04-06hr    16 embryo 06-08hr    13 embryo 08-10hr    20 embryo 10-12hr    37 embryo 12-14hr    57 embryo 14-16hr  108 embryo 16-18hr  119 embryo 18-20hr  111 embryo 20-22hr  127 embryo 22-24hr  141 larva L1    100 larva L2    97 larva L3 12hr old    95 larva L3 puffstage 1-2  114 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    56 white prepupae new    55 white prepupae 12hr    67 white prepupae 24hr    70 pupae 2d postWPP    99 pupae 3d postWPP    66 pupae 4d postWPP    72 adult male 01day    85 adult male 05day    95 adult male 30day  114 adult female 01day    82 adult female 05day    68 adult female 30day    71 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    73 embryo 02-04hr    65 embryo 04-06hr    16 embryo 06-08hr    13 embryo 08-10hr    20 embryo 10-12hr    37 embryo 12-14hr    57 embryo 14-16hr    108 embryo 16-18hr    119 embryo 18-20hr    111 embryo 20-22hr    127 embryo 22-24hr    141 larva L1    100 larva L2    97 larva L3 12hr old    95 larva L3 puffstage 1-2    114 larva L3 puffstage 3-6    73 larva L3 puffstage 7-9    56 white prepupae new    55 white prepupae 12hr    67 white prepupae 24hr    70 pupae 2d postWPP    99 pupae 3d postWPP    66 pupae 4d postWPP    72 adult male 01day    85 adult male 05day    95 adult male 30day    114 adult female 01day    82 adult female 05day    68 adult female 30day    71 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    44 Schneider line 2 Sg4    16 embryonic 1182-4H    33 embryonic GM2    28 embryonic Kc167    33 embryonic S1    40 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    23 wing disc ML-DmD8    20 wing disc ML-DmD9    29 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    14 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11    23 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1    24 CNS ML-DmBG2-c2    46 tumorous blood cells mbn2    18 ovary fGS/OSS    25 ovary OSC    14 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (44) Schneider line 2 Sg4    16 embryonic 1182-4H  (33) embryonic GM2  (28) embryonic Kc167  (33) embryonic S1  (40) embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    23 wing disc ML-DmD8    20 wing disc ML-DmD9  (29) wing disc ML-DmD16-c3    19 wing disc ML-DmD21    14 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11    23 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1    24 CNS ML-DmBG2-c2  (46) tumorous blood cells mbn2    18 ovary fGS/OSS    25 ovary OSC    14 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    44 Schneider line 2 Sg4    16 embryonic 1182-4H    33 embryonic GM2    28 embryonic Kc167    33 embryonic S1    40 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    23 wing disc ML-DmD8    20 wing disc ML-DmD9    29 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    14 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11    23 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1    24 CNS ML-DmBG2-c2    46 tumorous blood cells mbn2    18 ovary fGS/OSS    25 ovary OSC    14 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    44 Schneider line 2 Sg4    16 embryonic 1182-4H    33 embryonic GM2    28 embryonic Kc167    33 embryonic S1    40 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    23 wing disc ML-DmD8    20 wing disc ML-DmD9    29 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    14 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11    23 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1    24 CNS ML-DmBG2-c2    46 tumorous blood cells mbn2    18 ovary fGS/OSS    25 ovary OSC    14 ovary OSS    18 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    44 Schneider line 2 Sg4    16 embryonic 1182-4H    33 embryonic GM2    28 embryonic Kc167    33 embryonic S1    40 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    23 wing disc ML-DmD8    20 wing disc ML-DmD9    29 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    14 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11    23 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1    24 CNS ML-DmBG2-c2    46 tumorous blood cells mbn2    18 ovary fGS/OSS    25 ovary OSC    14 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (44) Schneider line 2 Sg4    16 embryonic 1182-4H  (33) embryonic GM2  28 embryonic Kc167  (33) embryonic S1  (40) embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    23 wing disc ML-DmD8    20 wing disc ML-DmD9  29 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    14 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11    23 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1    24 CNS ML-DmBG2-c2  (46) tumorous blood cells mbn2    18 ovary fGS/OSS    25 ovary OSC    14 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    44 Schneider line 2 Sg4    16 embryonic 1182-4H    33 embryonic GM2    28 embryonic Kc167    33 embryonic S1    40 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    23 wing disc ML-DmD8    20 wing disc ML-DmD9    29 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    14 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11    23 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1    24 CNS ML-DmBG2-c2    46 tumorous blood cells mbn2    18 ovary fGS/OSS    25 ovary OSC    14 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    44 Schneider line 2 Sg4    16 embryonic 1182-4H    33 embryonic GM2    28 embryonic Kc167    33 embryonic S1    40 embryonic S3    18 leg disc CME L1    22 wing disc CME-W2    23 wing disc ML-DmD8    20 wing disc ML-DmD9    29 wing disc ML-DmD16-c3    19 wing disc ML-DmD21    14 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11    23 antennal disc ML-DmD20-c5    23 mixed discs ML-DmD4-c1    17 CNS ML-DmBG1-c1    24 CNS ML-DmBG2-c2    46 tumorous blood cells mbn2    18 ovary fGS/OSS    25 ovary OSC    14 ovary OSS    18 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    24 cold shock, 4-day adult    15 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    55 Cadmium 50 mM 12 hrs, larvae L3    46 Cadmium 50 mM 48 hrs, 4-day adult    39 Cadmium 100 mM 48 hrs, 4-day adult    36 Copper 0.5 mM 12 hrs, larvae L3    50 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    46 Ethanol 5% 3 hrs, larvae L3    54 Ethanol 10% 3 hrs, larvae L3    39 Caffeine 1.5 mg/ml 4 hrs, larvae L3    46 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    44 Paraquat 10 mM 48 hrs, 4-day adult    47 Rotenone 2 μg 12 hrs, larvae L3    42 Rotenone 8 μg 12 hrs, larvae L3    43 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    24 cold shock, 4-day adult    15 heat shock, 4-day adult  (45) Cadmium 50 mM 6 hrs, larvae L3  (55) Cadmium 50 mM 12 hrs, larvae L3  (46) Cadmium 50 mM 48 hrs, 4-day adult  (39) Cadmium 100 mM 48 hrs, 4-day adult  (36) Copper 0.5 mM 12 hrs, larvae L3  (50) Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3  (36) Zinc 4.5 mM 48 hrs, 4-day adult  26 Ethanol 2.5% 3 hrs, larvae L3  (46) Ethanol 5% 3 hrs, larvae L3  (54) Ethanol 10% 3 hrs, larvae L3  (39) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (46) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (43) Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult  (44) Paraquat 10 mM 48 hrs, 4-day adult  (47) Rotenone 2 μg 12 hrs, larvae L3  (42) Rotenone 8 μg 12 hrs, larvae L3  (43) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    24 cold shock, 4-day adult    15 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    55 Cadmium 50 mM 12 hrs, larvae L3    46 Cadmium 50 mM 48 hrs, 4-day adult    39 Cadmium 100 mM 48 hrs, 4-day adult    36 Copper 0.5 mM 12 hrs, larvae L3    50 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    46 Ethanol 5% 3 hrs, larvae L3    54 Ethanol 10% 3 hrs, larvae L3    39 Caffeine 1.5 mg/ml 4 hrs, larvae L3    46 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    44 Paraquat 10 mM 48 hrs, 4-day adult    47 Rotenone 2 μg 12 hrs, larvae L3    42 Rotenone 8 μg 12 hrs, larvae L3    43 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    24 cold shock, 4-day adult    15 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    55 Cadmium 50 mM 12 hrs, larvae L3    46 Cadmium 50 mM 48 hrs, 4-day adult    39 Cadmium 100 mM 48 hrs, 4-day adult    36 Copper 0.5 mM 12 hrs, larvae L3    50 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    46 Ethanol 5% 3 hrs, larvae L3    54 Ethanol 10% 3 hrs, larvae L3    39 Caffeine 1.5 mg/ml 4 hrs, larvae L3    46 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    44 Paraquat 10 mM 48 hrs, 4-day adult    47 Rotenone 2 μg 12 hrs, larvae L3    42 Rotenone 8 μg 12 hrs, larvae L3    43 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    24 cold shock, 4-day adult    15 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    55 Cadmium 50 mM 12 hrs, larvae L3    46 Cadmium 50 mM 48 hrs, 4-day adult    39 Cadmium 100 mM 48 hrs, 4-day adult    36 Copper 0.5 mM 12 hrs, larvae L3    50 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    46 Ethanol 5% 3 hrs, larvae L3    54 Ethanol 10% 3 hrs, larvae L3    39 Caffeine 1.5 mg/ml 4 hrs, larvae L3    46 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    44 Paraquat 10 mM 48 hrs, 4-day adult    47 Rotenone 2 μg 12 hrs, larvae L3    42 Rotenone 8 μg 12 hrs, larvae L3    43 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    24 cold shock, 4-day adult    15 heat shock, 4-day adult  (45) Cadmium 50 mM 6 hrs, larvae L3  (55) Cadmium 50 mM 12 hrs, larvae L3  (46) Cadmium 50 mM 48 hrs, 4-day adult  (39) Cadmium 100 mM 48 hrs, 4-day adult  (36) Copper 0.5 mM 12 hrs, larvae L3  (50) Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3  (36) Zinc 4.5 mM 48 hrs, 4-day adult  26 Ethanol 2.5% 3 hrs, larvae L3  (46) Ethanol 5% 3 hrs, larvae L3  (54) Ethanol 10% 3 hrs, larvae L3  (39) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (46) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (43) Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult  (44) Paraquat 10 mM 48 hrs, 4-day adult  (47) Rotenone 2 μg 12 hrs, larvae L3  (42) Rotenone 8 μg 12 hrs, larvae L3  (43) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    24 cold shock, 4-day adult    15 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    55 Cadmium 50 mM 12 hrs, larvae L3    46 Cadmium 50 mM 48 hrs, 4-day adult    39 Cadmium 100 mM 48 hrs, 4-day adult    36 Copper 0.5 mM 12 hrs, larvae L3    50 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    46 Ethanol 5% 3 hrs, larvae L3    54 Ethanol 10% 3 hrs, larvae L3    39 Caffeine 1.5 mg/ml 4 hrs, larvae L3    46 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    44 Paraquat 10 mM 48 hrs, 4-day adult    47 Rotenone 2 μg 12 hrs, larvae L3    42 Rotenone 8 μg 12 hrs, larvae L3    43 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    24 cold shock, 4-day adult    15 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    55 Cadmium 50 mM 12 hrs, larvae L3    46 Cadmium 50 mM 48 hrs, 4-day adult    39 Cadmium 100 mM 48 hrs, 4-day adult    36 Copper 0.5 mM 12 hrs, larvae L3    50 Copper 15 mM 48 hrs, 4-day adult    19 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    26 Ethanol 2.5% 3 hrs, larvae L3    46 Ethanol 5% 3 hrs, larvae L3    54 Ethanol 10% 3 hrs, larvae L3    39 Caffeine 1.5 mg/ml 4 hrs, larvae L3    46 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    44 Paraquat 10 mM 48 hrs, 4-day adult    47 Rotenone 2 μg 12 hrs, larvae L3    42 Rotenone 8 μg 12 hrs, larvae L3    43 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_10 mE1_20_mRNA_expression_cluster_02
External Data & Images
Linkouts	BDGP expression data • GH11112 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027547 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1927-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG1927EY11027 viable, with Scer\GAL4pnr-MD237 CG1927GD2256 Sterility Allele fertile CG1927EY11027 Phenotype manifest in Allele
Classical Alleles ( 6 )
For All Classical Alleles Show
Allele of CG1927 Class Mutagen Stocks Known lesion CG19275-HA-2392 1 -- CG1927EY11027 P-element activity 1 -- CG1927KG03297 P-element activity 1 -- CG1927MI00277 1 -- CG1927EP3431 0 -- CG1927f06777 piggyBac transposase 0 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG1927 Class Mutagen Stocks Known lesion CG1927GD2256 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG1927GD16428 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG1927KK106820 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD2256} NA P{GD16428} NA P{KK106820} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}CG1927MI00277 NA P{RS5}CG19275-HA-2392 NA P{SUPor-P}CG1927KG03297 NA PBac{WH}CG1927f06777 NA insertion of mobile activating element P{EP}CG1927EP3431 NA P{EPgy2}CG1927EY11027 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG1927 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 63789 DroID - A comprehensive database of gene and protein interactions. • FBgn0027547 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38262
Orthologs
OrthoDB Orthologs (23) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6G1N2R Dipteran inclusive ortholog search EOG6J6S11 Insect inclusive ortholog search EOG69P8WM Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6G1N2R)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG1927     Drosophila simulans   Dsim\GD13420 Y   Drosophila sechellia   Dsec\GM14150 Y   Drosophila erecta   Dere\GG14541 Y   Drosophila yakuba   Dyak\GE20895 Y   Drosophila ananassae   Dana\GF24943 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA15136 Y   Drosophila persimilis   Dper\GL22661 Y   Drosophila willistoni   Dwil\GK12609 Y   Drosophila virilis   Dvir\GJ13450 Y   Drosophila mojavensis   Dmoj\GI12175 Y   Drosophila grimshawi   Dgri\GH16499 Y
Orthologs in non-Drosophila Dipterans (EOG6J6S11)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL013163   Anopheles gambiae Malaria mosquito  Agam\AGAP006543   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ002977
Orthologs in non-Dipteran Insects (EOG69P8WM)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB41104   Camponotus floridanus Florida carpenter ant  Cflo\CFLO11968   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14377   Linepithema humile Argentine ant  Lhum\LH11462   Pogonomyrmex barbatus Red harvester ant  Pbar\PB18335   Solenopsis invicta Red fire ant  Sinv\SINV16636   Bombyx mori Silkmoth  Bmor\BGIBMGA002121   Tribolium castaneum Red flour beetle  Tcas\TC002531
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD13420 Drosophila sechellia Dsec\GM14150 Drosophila erecta Dere\GG14541 Drosophila yakuba Dyak\GE20895 Drosophila ananassae Dana\GF24943 Drosophila pseudoobscura pseudoobscura Dpse\GA15136 Drosophila persimilis Dper\GL22661 Drosophila willistoni Dwil\GK12609 Drosophila virilis Dvir\GJ13450 Drosophila mojavensis Dmoj\GI12175 Drosophila grimshawi Dgri\GH16499
Stocks & Reagents
Stocks Listed in FlyBase ( 8 )
Bloomington	30952 y1 w*; Mi{MIC}CG1927MI00277 21360 y1 w67c23; P{EPgy2}CG1927EY11027 12923 y1 w67c23; P{SUPor-P}CG1927KG03297 ry506/TM3, Sb1 Ser1
Kyoto	125609 w1118; P{RS5}CG19275-HA-2392
VDRC	v105926 P{KK106820}VIE-260B v7440 w1118 P{GD2256}v7440 v47175 w1118; P{GD16428}v47175 v7441 w1118; P{GD2256}v7441/TM3
Genomic Clones ( 1 )
	BACR16A03 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 43 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH11112
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH28873 GM06944 LD16008 LP05932 RE05644 RE20767 RE26069 RE64651 SD12453 SD15004
Other clones	35045 67340 71066 107625 125658 192333 214499.21 CK01.13C.C12 CK01.37C.F8 CK01.74C.A8 CK01.100D.G11 EC14468 EK031956 EK041509 EK058536 EK085028 EK109801 EK145459 EK195414 EK198828 EK233657 EK247953 EK250703 EK295517 EP00743 FGM216D10 FGM220G09 RM01994 RM02594 RP001017491 RP001024682 RP001043320
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0027547 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38262
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: BcDNA:GH11112 CG1927 (Zhong, 1999.11)
Source for database merge of	Source for merge of: CG1927 anon-62BCb (FlyBase, 1996-) Source for merge of: CG1927 anon-WO0118547.340 (FlyBase, 1996-)
Additional comments	Source for merge of CG1927 anon-WO0118547.340 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	Area matching Drosophila EST AA803074. (Davies, 2001.3.15) Identification: transcription unit identified during molecular analysis of the mu2 genomic region. (Kasravi et al., 1999)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_139427 NM_001274373 RefSeq (Proteins) • NP_647684 NP_001261302 DDBJ / EMBL / GenBank • AA803074 AAD38640 AAF47601 AF145665 AGB93997 AI114305 AI402245 AX094216 BH214644 CW848175 CZ489503 CZ489504 Entrez Gene - A searchable database of RefSeq genes. • 38262 UniProtKB/TrEMBL • Q9Y107
Other Crossreferences
	BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GH11112
Linkouts
	BioGRID - A database of protein and genetic interactions • 63789 DroID - A comprehensive database of gene and protein interactions. • FBgn0027547 DRSC - Results from RNAi screens. • FBgn0027547 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027547 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1927-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0027547 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 38262 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 38262 modMine - Data generated by the modENCODE project. • FBgn0027547
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	anon-62BCb   anon-WO0118547.340   BcDNA:GH11112 (Giot et al., 2003, ) cDNA A (Kasravi et al., 1999) CG1927 (Chang et al., 2008, Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
	FBgn0027776 FBgn0062082
References ( 18 )
Research paper	Chang et al., 2008, PLoS ONE 3(9): e3209 Modeling spinal muscular atrophy in Drosophila. [FBrf0206033] Kasravi et al., 1999, Genetics 152(3): 1025--1035 Molecular cloning and tissue-specific expression of the mutator2 gene (mu2) in Drosophila melanogaster. [FBrf0110051]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Bellen, 2010.4.14, BDGP_2010_0415.GDP.xml BDGP_2010_0415.GDP.xml [FBrf0210544] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file) Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Curated genome annotation	Zhong, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126703]
Patent	Davies et al., 2001, World Patent 0118547: Essential genes and assays relating thereto. [FBrf0199103]
DNA/RNA sequence record	Davies, 2001.3.15, GenBank/EMBL/DDBJ: AX094216 Sequence 340 from Patent WO0118547. [FBrf0150047]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]