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Gene Dmel\CG2082

General Information
Symbol	Dmel\CG2082	Species	D. melanogaster
Name		Annotation symbol	CG2082
Feature type	protein_coding_gene	FlyBase ID	FBgn0027608
Gene Model Status	Current	Stock availability	10 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	83C3-83C3	Sequence location	3R:1,584,402..1,606,798 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG2082 (FBgn0027608). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 10 alleles are reported. No phenotypic data is available. It has 12 annotated transcripts and 12 annotated polypeptides. Protein features are: Ndr. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of extremely low expression. Peak expression observed at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult testis, larval/adult carcass. Gene sequence location is 3R:1584402..1606798.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 83C3-83C3   Limits computationally determined from genome sequence between P{lacW}casj1C2 and P{PZ}lab01241
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG2082 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47 Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG2082-RA FBtr0078675  NM_169100   1863   365 CG2082-RB FBtr0078674  NM_141327   2280   364 CG2082-RC FBtr0078672  NM_169099   2281   361 CG2082-RD FBtr0078676  NM_169102   1059   201 CG2082-RG FBtr0300906  NM_001170042   1872   368 CG2082-RH FBtr0300907  NM_001170043   2287   363 CG2082-RJ FBtr0300909  NM_001170045   2271   361 CG2082-RK FBtr0300910  NM_001170046   2290   364 CG2082-RL FBtr0300911  NM_001170047   2277   363 CG2082-RM FBtr0300912  NM_001170048   1225   211 CG2082-RN FBtr0300913  NM_001170049   1177   197 CG2082-RO FBtr0306153  NM_001260006   1387   335
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG2082-PA   FBpp0078324   39.7   365   8.76     NP_730998   AAF51958 CG2082-PB   FBpp0078323   40.1   364   8.57     NP_649584   AAN14317 CG2082-PC   FBpp0078321   39.7   361   8.76     NP_730997   AAN14318 CG2082-PD   FBpp0078325   21.6   201   6.59     NP_731000   AAN14320 CG2082-PG   FBpp0290128   40.0   368   8.57     NP_001163513   ACZ94812 CG2082-PH   FBpp0290129   40.0   363   8.76     NP_001163514   ACZ94813 CG2082-PJ   FBpp0290131   39.7   361   8.76     NP_001163516   ACZ94815 CG2082-PK   FBpp0290132   40.1   364   8.57     NP_001163517   ACZ94816 CG2082-PL   FBpp0290133   40.0   363   8.76     NP_001163518   ACZ94817 CG2082-PM   FBpp0290134   23.2   211   6.51     NP_001163519   ACZ94818 CG2082-PN   FBpp0290135   21.6   197   6.50     NP_001163520   ACZ94819 CG2082-PO   FBpp0297283   37.0   335   9.95     NP_001246935   AFH06254
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ndr (IPR004142)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA698332   AE014297 AAF51958   AE014297 AAN14317   AE014297 AAN14318   AE014297 AAN14320   AE014297 ACZ94812   AE014297 ACZ94813   AE014297 ACZ94815   AE014297 ACZ94816   AE014297 ACZ94817   AE014297 ACZ94818   AE014297 ACZ94819   AF145604 AAD38579   AE014297 AFH06254   AI063028   AI063711   AI259606   AI297905   AI388081   AI388340   AI388341   AI401863   AI405435   AW940729   AY060319 AAL25358   BE977004   BF487217   BF489078   BF491063   BF494993   BF496230   BF497625   BF498492   BF500835   BF501617   BF501773   BF503435   BF504119   BF505121   BF505975   BI362028   BI369001   BI565231   BI566883   BI566899   BI571014   BI571467   BI583659   BI587035   BI587621   BI609582   BI609848   BI613516   BI616937   BI617331   BI619590   BI622132   BI625093   BI627066   BT100215   BT126191   CA805276   CA807095   CK661161   CO190643   CO269206   CO271580   CO271634   CO283554   CO284223   CO284428   CO285541   CO296861   CO303813   CO307799   CO310749   CO311564   CO312858   CO313240   CO315357   CO315358   CO326420   CO333214   CO344334   CZ466386   CZ467965   CZ478435   EC060101   EC060111   EC073632   EC074095   EC076103   EC197226   EC197607   EC201830   EC203879   EC206964   EC213606   EC216688   EC225511   EC226724   EC234371   EC248163   EC248485   EC251233   EC257677   EC259654   ES691258   ES691700   ES694411   ES694460   ES695052   ES695192   ES696607   ES696612   ES696615   ES696617   EV580403   GH771046   GH784227   GH790437   GH793026   GH821842   GH847064   GH871157   GH932992   GH939192
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q59E07 Q8IPR0 Q95T61 Q9VNH7 Q9Y164 E1JJ59 E1JJ60 E1JJ55 E1JJ61
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult testis, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    10 central nervous system, pupae P8    208 head, virgin 1-day female    124 head, virgin 4-day female    120 head, virgin 20-day female    72 head, mated 1-day female    125 head, mated 4-day female    121 head, mated 20-day female    66 head, mated 1-day male    174 head, mated 4-day male    204 head, mated 20-day male    132 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    10 fat body, pupae P8    131 carcass, larvae L3 wandering    53 carcass, 1-day adult    60 carcass, 4-day adult    46 carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    156 accessory gland, mated 4-day male    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    10 central nervous system, pupae P8  (208) head, virgin 1-day female  (124) head, virgin 4-day female  (120) head, virgin 20-day female  (72) head, mated 1-day female  (125) head, mated 4-day female  (121) head, mated 20-day female  (66) head, mated 1-day male  (174) head, mated 4-day male  (204) head, mated 20-day male  (132) salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    10 fat body, pupae P8  (131) carcass, larvae L3 wandering  (53) carcass, 1-day adult  (60) carcass, 4-day adult  (46) carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male  (156) accessory gland, mated 4-day male    17 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    10 central nervous system, pupae P8  (208) head, virgin 1-day female  (124) head, virgin 4-day female  (120) head, virgin 20-day female    72 head, mated 1-day female  (125) head, mated 4-day female  (121) head, mated 20-day female    66 head, mated 1-day male  (174) head, mated 4-day male  (204) head, mated 20-day male  (132) salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    10 fat body, pupae P8  (131) carcass, larvae L3 wandering    53 carcass, 1-day adult    60 carcass, 4-day adult    46 carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male  (156) accessory gland, mated 4-day male    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    10 central nervous system, pupae P8    208 head, virgin 1-day female    124 head, virgin 4-day female    120 head, virgin 20-day female    72 head, mated 1-day female    125 head, mated 4-day female    121 head, mated 20-day female    66 head, mated 1-day male    174 head, mated 4-day male    204 head, mated 20-day male    132 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    10 fat body, pupae P8    131 carcass, larvae L3 wandering    53 carcass, 1-day adult    60 carcass, 4-day adult    46 carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    156 accessory gland, mated 4-day male    17 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    10 central nervous system, pupae P8    208 head, virgin 1-day female    124 head, virgin 4-day female    120 head, virgin 20-day female    72 head, mated 1-day female    125 head, mated 4-day female    121 head, mated 20-day female    66 head, mated 1-day male    174 head, mated 4-day male    204 head, mated 20-day male    132 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    10 fat body, pupae P8    131 carcass, larvae L3 wandering    53 carcass, 1-day adult    60 carcass, 4-day adult    46 carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    156 accessory gland, mated 4-day male    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    10 central nervous system, pupae P8  (208) head, virgin 1-day female  (124) head, virgin 4-day female  (120) head, virgin 20-day female  (72) head, mated 1-day female  (125) head, mated 4-day female  (121) head, mated 20-day female  (66) head, mated 1-day male  (174) head, mated 4-day male  (204) head, mated 20-day male  (132) salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    10 fat body, pupae P8  (131) carcass, larvae L3 wandering  (53) carcass, 1-day adult  (60) carcass, 4-day adult  (46) carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male  (156) accessory gland, mated 4-day male    17 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    10 central nervous system, pupae P8  (208) head, virgin 1-day female  124 head, virgin 4-day female  120 head, virgin 20-day female    72 head, mated 1-day female  125 head, mated 4-day female  121 head, mated 20-day female    66 head, mated 1-day male  (174) head, mated 4-day male  (204) head, mated 20-day male  132 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    10 fat body, pupae P8  131 carcass, larvae L3 wandering    53 carcass, 1-day adult    60 carcass, 4-day adult    46 carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male  (156) accessory gland, mated 4-day male    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    10 central nervous system, pupae P8    208 head, virgin 1-day female    124 head, virgin 4-day female    120 head, virgin 20-day female    72 head, mated 1-day female    125 head, mated 4-day female    121 head, mated 20-day female    66 head, mated 1-day male    174 head, mated 4-day male    204 head, mated 20-day male    132 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    2 fat body, larvae L3 wandering    1 fat body, white prepupae    10 fat body, pupae P8    131 carcass, larvae L3 wandering    53 carcass, 1-day adult    60 carcass, 4-day adult    46 carcass, 20-day adult    23 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    156 accessory gland, mated 4-day male    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of extremely low expression. Peak expression observed at stages throughout the pupal period. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    3 embryo 16-18hr    3 embryo 18-20hr    5 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    45 white prepupae new    139 white prepupae 12hr    176 white prepupae 24hr    129 pupae 2d postWPP    131 pupae 3d postWPP    60 pupae 4d postWPP    53 adult male 01day    77 adult male 05day    80 adult male 30day    70 adult female 01day    22 adult female 05day    7 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    3 embryo 16-18hr    3 embryo 18-20hr    5 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9  (45) white prepupae new  (139) white prepupae 12hr  (176) white prepupae 24hr  (129) pupae 2d postWPP  (131) pupae 3d postWPP  (60) pupae 4d postWPP  (53) adult male 01day  (77) adult male 05day  (80) adult male 30day  (70) adult female 01day    22 adult female 05day    7 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    3 embryo 16-18hr    3 embryo 18-20hr    5 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    45 white prepupae new  (139) white prepupae 12hr  (176) white prepupae 24hr  (129) pupae 2d postWPP  (131) pupae 3d postWPP    60 pupae 4d postWPP    53 adult male 01day    77 adult male 05day    80 adult male 30day    70 adult female 01day    22 adult female 05day    7 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    3 embryo 16-18hr    3 embryo 18-20hr    5 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    45 white prepupae new    139 white prepupae 12hr    176 white prepupae 24hr    129 pupae 2d postWPP    131 pupae 3d postWPP    60 pupae 4d postWPP    53 adult male 01day    77 adult male 05day    80 adult male 30day    70 adult female 01day    22 adult female 05day    7 adult female 30day    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    3 embryo 16-18hr    3 embryo 18-20hr    5 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    45 white prepupae new    139 white prepupae 12hr    176 white prepupae 24hr    129 pupae 2d postWPP    131 pupae 3d postWPP    60 pupae 4d postWPP    53 adult male 01day    77 adult male 05day    80 adult male 30day    70 adult female 01day    22 adult female 05day    7 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    3 embryo 16-18hr    3 embryo 18-20hr    5 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9  (45) white prepupae new  (139) white prepupae 12hr  (176) white prepupae 24hr  (129) pupae 2d postWPP  (131) pupae 3d postWPP  (60) pupae 4d postWPP  (53) adult male 01day  (77) adult male 05day  (80) adult male 30day  (70) adult female 01day    22 adult female 05day    7 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    3 embryo 16-18hr    3 embryo 18-20hr    5 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    45 white prepupae new  139 white prepupae 12hr  (176) white prepupae 24hr  129 pupae 2d postWPP  131 pupae 3d postWPP    60 pupae 4d postWPP    53 adult male 01day    77 adult male 05day    80 adult male 30day    70 adult female 01day    22 adult female 05day    7 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    3 embryo 16-18hr    3 embryo 18-20hr    5 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    12 larva L2    4 larva L3 12hr old    2 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    45 white prepupae new    139 white prepupae 12hr    176 white prepupae 24hr    129 pupae 2d postWPP    131 pupae 3d postWPP    60 pupae 4d postWPP    53 adult male 01day    77 adult male 05day    80 adult male 30day    70 adult female 01day    22 adult female 05day    7 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    2 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    17 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    2 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    17 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    2 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    17 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    2 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    17 ovary OSS    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    2 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    17 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    2 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    17 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    2 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    17 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    1 embryonic Kc167    0 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    1 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    2 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    0 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    17 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    76 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    80 Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    25 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    35 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult  (29) Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult  (76) Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult  (80) Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    25 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult  (35) Paraquat 10 mM 48 hrs, 4-day adult  (35) Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    76 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    80 Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    25 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    35 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    76 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    80 Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    25 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    35 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    76 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    80 Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    25 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    35 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult  29 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult  (76) Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult  (80) Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    25 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult  (35) Paraquat 10 mM 48 hrs, 4-day adult  (35) Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    76 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    80 Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    25 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    35 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    12 cold shock, 4-day adult    11 heat shock, 4-day adult    10 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    14 Cadmium 50 mM 48 hrs, 4-day adult    11 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    76 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    80 Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    3 Ethanol 10% 3 hrs, larvae L3    2 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    25 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    35 Paraquat 10 mM 48 hrs, 4-day adult    35 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_04
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027608 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG2082-RA;CG2082-RE
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele partially lethal - majority die, with Scer\GAL4pnr-MD237 CG2082GD8635 viable CG2082c02462 CG2082e00558 Sterility Allele fertile CG2082c02462 CG2082e00558 Phenotype manifest in Allele
Classical Alleles ( 7 )
For All Classical Alleles Show
Allele of CG2082 Class Mutagen Stocks Known lesion CG2082c02462 piggyBac transposase 2 -- CG2082e00558 piggyBac transposase 2 -- CG2082c02460 1 -- CG2082G4067 P-element activity 1 -- CG2082MB02501 1 -- CG2082MI06537 1 -- CG2082c00348 piggyBac transposase 0 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG2082 Class Mutagen Stocks Known lesion CG2082GD8635 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG2082KK111658 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG2082NIG.2082R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6145 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8635} NA P{KK111658} NA P{NIG.2082R} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions Mi{MIC}CG2082MI06537 NA PBac{PB}CG2082c00348 NA PBac{PB}CG2082c02460 NA PBac{PB}CG2082c02462 NA PBac{RB}CG2082e00558 NA insertion of enhancer trap binary system Mi{ET1}CG2082MB02501 No insertion of mobile activating element P{EP}jagnG4067 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG2082 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 65918 DroID - A comprehensive database of gene and protein interactions. • FBgn0027608 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40713
Orthologs
OrthoDB Orthologs (22) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6SJ60S Dipteran inclusive ortholog search EOG6SXNN4 Insect inclusive ortholog search EOG6PVMV9 Arthropod inclusive ortholog search EOG6FQZ78 Metazoa inclusive ortholog search EOG6P06NW
Orthologs in Drosophila Species (EOG6SJ60S)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG2082     Drosophila simulans   Dsim\GD19583 Y   Drosophila sechellia   Dsec\GM10591 Y   Drosophila erecta   Dere\GG10854 Y   Drosophila yakuba   Dyak\GE24139 Y   Drosophila ananassae   Dana\GF18647 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA15229 Y   Drosophila persimilis   Dper\GL23012 Y   Drosophila willistoni   Dwil\GK13862 Y   Drosophila virilis   Dvir\GJ23888 Y   Drosophila mojavensis   Dmoj\GI22641 Y   Drosophila grimshawi   Dgri\GH19438 Y
Orthologs in non-Drosophila Dipterans (EOG6SXNN4)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL006171   Anopheles gambiae Malaria mosquito  Agam\AGAP003238   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ001352
Orthologs in non-Dipteran Insects (EOG6PVMV9)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Acyrthosiphon pisum Pea aphid  Apim\ACYPI001502   Bombyx mori Silkmoth  Bmor\BGIBMGA004682   Pediculus humanus Human body louse  Phum\PHUM515600
Orthologs in non-Insect Arthropods (EOG6FQZ78)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_321849   Ixodes scapularis Deer tick  Isca\ISCW001010
Orthologs in non-Arthropod Metazoa (EOG6P06NW)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\ZK1073.1   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_013016gn
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD19583 Drosophila sechellia Dsec\GM10591 Drosophila erecta Dere\GG10854 Drosophila yakuba Dyak\GE24139 Drosophila ananassae Dana\GF18647 Drosophila pseudoobscura pseudoobscura Dpse\GA15229 Drosophila persimilis Dper\GL23012 Drosophila willistoni Dwil\GK13862 Drosophila virilis Dvir\GJ23888 Drosophila mojavensis Dmoj\GI22641 Drosophila grimshawi Dgri\GH19438
Stocks & Reagents
Stocks Listed in FlyBase ( 10 )
Bloomington	10917 w1118; PBac{PB}CG2082c02462 17864 w1118; PBac{RB}CG2082e00558 23449 w1118; Mi{ET1}CG2082MB02501 42158 y1 w*; Mi{MIC}CG2082MI06537 30060 w1118; P{EP}jagnG4067 CG2082G4067/TM6C, Sb1
Harvard	- PBac{PB}CG2082c02460 - PBac{PB}CG2082c02462 - PBac{RB}CG2082e00558
VDRC	v102438 P{KK111658}VIE-260B v19120 w1118; P{GD8635}v19120
Genomic Clones ( 1 )
	BACR02L23 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 107 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT13994 GH02439 GH19206 RH63159
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT03791 AT05417 AT07288 AT08316 AT09981 AT11836 AT15882 AT16989 AT17320 AT19425 AT21942 AT24777 AT27720 GH03674 GH18842 GH19207 GH25438 HL04290 LP03058 LP12348 LP20360 RE46479 RE55074 RH05822 RH06494 RH14382 RH14685 RH22322 RH27296 RH28345 RH36676 RH36688 RH42679 RH47114 RH47628 RH50655 RH53957 RH62947 RH64922 RH68258
Other clones	46727 53618 56623 82102 99805 102107 105202 106422 158264 158533 214407.67 214473.73 280885 281263 AT12909 bs58g06 CK01.60D.G3 CK01.123B.H4 CK01.169A.A2 CK01.169C.A2 CK01.169D.D5 Dmel_dig_001825_0631_2072 EK048920 EK093862 EK103933 EK104115 EK163641 EK165530 EK166031 EK169222 EK215320 EK222428 EK225323 EK230250 EK231957 EK242814 EK255707 EK261155 EK261156 EK306216 EP03863 EP19058 ESG016b.E21_B02 ESG0117b.B21_F10 RC0-DA0001-120700-015-F10 RC0-DA0001-130700-114-H07 RC0-DL0001-140700-012-A12 RC0-DL0001-140700-014-C06 RC0-DL0001-140700-121-D07 RC0-DL0001-140700-126-C04 RC0-DP0010-150700-011-B10 RC0-DP0010-150700-011-F07 RC0-DP0010-150700-011-H04 RC0-DP0010-150700-011-H08 RP003029542 RP003247375 RP003277087 RP003379916 RP003485702 RP003497640 RP003595068 RP003602413 RP003632850
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0027608 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40713
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: BcDNA:GH02439 CG2082 (Zheng, 1999.11)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141327 NM_169099 NM_169100 NM_169102 NM_001170042 NM_001170043 NM_001170045 NM_001170046 NM_001170047 NM_001170048 NM_001170049 NM_001260006 RefSeq (Proteins) • NP_649584 NP_730997 NP_730998 NP_731000 NP_001163513 NP_001163514 NP_001163516 NP_001163517 NP_001163518 NP_001163519 NP_001163520 NP_001246935 DDBJ / EMBL / GenBank • AAD38579 AAF51958 AAF51958.1 AAL25358 AAN14317 AAN14317.1 AAN14318 AAN14318.1 AAN14319.1 AAN14320 AAN14320.1 ACZ94812 ACZ94813 ACZ94814 ACZ94815 ACZ94816 ACZ94817 ACZ94818 ACZ94819 AF145604 AFH06254 AI063028 AI388340 AI401863 AW940729 AY060319 BF500835 CZ466386 CZ467965 CZ478435 Entrez Gene - A searchable database of RefSeq genes. • 40713 UniProtKB/TrEMBL • E1JJ55 E1JJ59 E1JJ60 E1JJ61 Q8IPR0 Q9VNH7 Q9Y164 Q59E07 Q95T61
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ndr (IPR004142)
Linkouts
	BioGRID - A database of protein and genetic interactions • 65918 DroID - A comprehensive database of gene and protein interactions. • FBgn0027608 DRSC - Results from RNAi screens. • FBgn0027608 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027608 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG2082-RA;CG2082-RE FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0027608 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40713 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40713 modMine - Data generated by the modENCODE project. • FBgn0027608
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	BcDNA:GH02439 (Giot et al., 2003, ) CG2082 (Wijnen et al., 2006, Lebo et al., 2009, Keleman et al., 2009.8.5, Beckstead et al., 2007, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
References ( 22 )
Generate a list of	All references relating to this gene ( 22 )
List References by type	Research paper  ( 3 ) Supplementary material  ( 3 ) Personal communication to FlyBase  ( 12 ) FlyBase analysis  ( 1 ) Stock list  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...