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Gene Dmel\vih

General Information
Symbol	Dmel\vih	Species	D. melanogaster
Name	vihar	Annotation symbol	CG10682
Feature type	protein_coding_gene	FlyBase ID	FBgn0027936
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	3L	Recombination map
Cytogenetic map	69C4-69C4	Sequence location	3L:12,497,387..12,498,921 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene vihar is referred to in FlyBase by the symbol Dmel\vih (CG10682, FBgn0027936). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: ubiquitin-protein ligase activity. There is experimental evidence that it is involved in the biological process: regulation of cell cycle. 14 alleles are reported. The phenotype of these alleles is annotated with: spindle. It has one annotated transcript and one annotated polypeptide. Protein features are: Ubiquitin-conjugating enzyme, E2; Ubiquitin-conjugating enzyme, active site; Ubiquitin-conjugating enzyme/RWD-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult ovary, adult testis. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult midgut, larval/adult hindgut, larval Malpighian tubules, larval/adult fat body, larval/adult salivary gland, larval trachea, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1641150_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of vih. Gene sequence location is 3L:12497387..12498921.
External Summaries
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features HFA09778 BKN22409
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 69C4-69C4   Limits computationally determined from genome sequence between P{PZ}l(3)0508805088 and P{PZ}l(3)0692406924
Experimentally Determined Cytological Location
Cytogenetic map Notes References 69C-69D   (determined by in situ hybridisation)   (Mathe et al., 2004) 69C-69C     (Mathe and Glover, 1999)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\vih for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) vih-RA FBtr0075958  NM_140325   1469   178
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein vih-PA   FBpp0075690   19.8   178   6.67     NP_648582   AAF49909
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ubiquitin-conjugating enzyme, E2 (IPR000608) Ubiquitin-conjugating enzyme/RWD-like (IPR016135) Ubiquitin-conjugating enzyme, active site (IPR023313)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014296 AAF49909   AF410850 AAL02117   AI946542   AX260092   AX260093   AX260094   BE977050   BE978186   BP553661   BP559753   BT028772   CO183897   CO189738   CO265342   CO267331   CO267556   CO273016   CO277256   CO281063   CO285495   CO297110   CO315273   CO324182   CO324593   CO339160   CO343058   EC074677   EC074825   EC078881   EC083177   EC195445   EC201865   EC220765   EC233643   EC233680   EC236650   EC238327   EC244643   EC247225   EC259519   EL869631   ES690659   ES694204   EV579234   GH941968   GH942691   GH942852   GH943380   GH943898   GH944506   GH945503   GH946251   GH946846   GH951003   GH956258   GH959288   GH961089   GH967065   GH968106   GH970245   GH971974   GH972165   GH974182   GH975536   GH978303   GH978439   GH978849   GH978956   GH978958   GH979683   GH980861   GH980889   GH980957   GH981466   GH982681   GH983211
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VTY6
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0027936    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0027936 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0027936 expression level Developmental Stage   Expression Level embryo 00-02hr    11982 embryo 02-04hr    7793 embryo 04-06hr    17894 embryo 06-08hr    18415 embryo 08-10hr    14570 embryo 10-12hr    8306 embryo 12-14hr    8474 embryo 14-16hr    3818 embryo 16-18hr    3458 embryo 18-20hr    2718 embryo 20-22hr    1923 embryo 22-24hr    2612 larva L1    2008 larva L2    1813 larva L3 12hr old    1078 larva L3 puffstage 1-2    1858 larva L3 puffstage 3-6    3153 larva L3 puffstage 7-9    5165 white prepupae new    5006 white prepupae 12hr    5511 white prepupae 24hr    6390 pupae 2d postWPP    6421 pupae 3d postWPP    4878 pupae 4d postWPP    3422 adult male 01day    4529 adult male 05day    5133 adult male 30day    5134 adult female 01day    3803 adult female 05day    7649 adult female 30day    7019 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (11982) embryo 02-04hr  (7793) embryo 04-06hr  (17894) embryo 06-08hr  (18415) embryo 08-10hr  (14570) embryo 10-12hr  (8306) embryo 12-14hr  (8474) embryo 14-16hr  (3818) embryo 16-18hr  (3458) embryo 18-20hr  (2718) embryo 20-22hr  (1923) embryo 22-24hr  (2612) larva L1  (2008) larva L2  (1813) larva L3 12hr old  (1078) larva L3 puffstage 1-2  (1858) larva L3 puffstage 3-6  (3153) larva L3 puffstage 7-9  (5165) white prepupae new  (5006) white prepupae 12hr  (5511) white prepupae 24hr  (6390) pupae 2d postWPP  (6421) pupae 3d postWPP  (4878) pupae 4d postWPP  (3422) adult male 01day  (4529) adult male 05day  (5133) adult male 30day  (5134) adult female 01day  (3803) adult female 05day  (7649) adult female 30day  (7019) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (11982) embryo 02-04hr  (7793) embryo 04-06hr  (17894) embryo 06-08hr  (18415) embryo 08-10hr  (14570) embryo 10-12hr  (8306) embryo 12-14hr  (8474) embryo 14-16hr  (3818) embryo 16-18hr  (3458) embryo 18-20hr  (2718) embryo 20-22hr  (1923) embryo 22-24hr  (2612) larva L1  (2008) larva L2  (1813) larva L3 12hr old    1078 larva L3 puffstage 1-2  (1858) larva L3 puffstage 3-6  (3153) larva L3 puffstage 7-9  (5165) white prepupae new  (5006) white prepupae 12hr  (5511) white prepupae 24hr  (6390) pupae 2d postWPP  (6421) pupae 3d postWPP  (4878) pupae 4d postWPP  (3422) adult male 01day  (4529) adult male 05day  (5133) adult male 30day  (5134) adult female 01day  (3803) adult female 05day  (7649) adult female 30day  (7019) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (11982) embryo 02-04hr    7793 embryo 04-06hr  (17894) embryo 06-08hr  (18415) embryo 08-10hr  (14570) embryo 10-12hr    8306 embryo 12-14hr    8474 embryo 14-16hr    3818 embryo 16-18hr    3458 embryo 18-20hr    2718 embryo 20-22hr    1923 embryo 22-24hr    2612 larva L1    2008 larva L2    1813 larva L3 12hr old    1078 larva L3 puffstage 1-2    1858 larva L3 puffstage 3-6    3153 larva L3 puffstage 7-9    5165 white prepupae new    5006 white prepupae 12hr    5511 white prepupae 24hr    6390 pupae 2d postWPP    6421 pupae 3d postWPP    4878 pupae 4d postWPP    3422 adult male 01day    4529 adult male 05day    5133 adult male 30day    5134 adult female 01day    3803 adult female 05day    7649 adult female 30day    7019 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    11982 embryo 02-04hr    7793 embryo 04-06hr    17894 embryo 06-08hr    18415 embryo 08-10hr    14570 embryo 10-12hr    8306 embryo 12-14hr    8474 embryo 14-16hr    3818 embryo 16-18hr    3458 embryo 18-20hr    2718 embryo 20-22hr    1923 embryo 22-24hr    2612 larva L1    2008 larva L2    1813 larva L3 12hr old    1078 larva L3 puffstage 1-2    1858 larva L3 puffstage 3-6    3153 larva L3 puffstage 7-9    5165 white prepupae new    5006 white prepupae 12hr    5511 white prepupae 24hr    6390 pupae 2d postWPP    6421 pupae 3d postWPP    4878 pupae 4d postWPP    3422 adult male 01day    4529 adult male 05day    5133 adult male 30day    5134 adult female 01day    3803 adult female 05day    7649 adult female 30day    7019 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0027936 expression level Developmental Stage   Expression Level embryo 00-02hr    11982 embryo 02-04hr    7793 embryo 04-06hr    17894 embryo 06-08hr    18415 embryo 08-10hr    14570 embryo 10-12hr    8306 embryo 12-14hr    8474 embryo 14-16hr    3818 embryo 16-18hr    3458 embryo 18-20hr    2718 embryo 20-22hr    1923 embryo 22-24hr    2612 larva L1    2008 larva L2    1813 larva L3 12hr old    1078 larva L3 puffstage 1-2    1858 larva L3 puffstage 3-6    3153 larva L3 puffstage 7-9    5165 white prepupae new    5006 white prepupae 12hr    5511 white prepupae 24hr    6390 pupae 2d postWPP    6421 pupae 3d postWPP    4878 pupae 4d postWPP    3422 adult male 01day    4529 adult male 05day    5133 adult male 30day    5134 adult female 01day    3803 adult female 05day    7649 adult female 30day    7019 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (11982) embryo 02-04hr  (7793) embryo 04-06hr  (17894) embryo 06-08hr  (18415) embryo 08-10hr  (14570) embryo 10-12hr  (8306) embryo 12-14hr  (8474) embryo 14-16hr  (3818) embryo 16-18hr  (3458) embryo 18-20hr  (2718) embryo 20-22hr  (1923) embryo 22-24hr  (2612) larva L1  (2008) larva L2  (1813) larva L3 12hr old  (1078) larva L3 puffstage 1-2  (1858) larva L3 puffstage 3-6  (3153) larva L3 puffstage 7-9  (5165) white prepupae new  (5006) white prepupae 12hr  (5511) white prepupae 24hr  (6390) pupae 2d postWPP  (6421) pupae 3d postWPP  (4878) pupae 4d postWPP  (3422) adult male 01day  (4529) adult male 05day  (5133) adult male 30day  (5134) adult female 01day  (3803) adult female 05day  (7649) adult female 30day  (7019) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (11982) embryo 02-04hr  (7793) embryo 04-06hr  (17894) embryo 06-08hr  (18415) embryo 08-10hr  (14570) embryo 10-12hr  (8306) embryo 12-14hr  (8474) embryo 14-16hr  (3818) embryo 16-18hr  (3458) embryo 18-20hr  (2718) embryo 20-22hr  1923 embryo 22-24hr  (2612) larva L1  2008 larva L2  1813 larva L3 12hr old    1078 larva L3 puffstage 1-2  1858 larva L3 puffstage 3-6  (3153) larva L3 puffstage 7-9  (5165) white prepupae new  (5006) white prepupae 12hr  (5511) white prepupae 24hr  (6390) pupae 2d postWPP  (6421) pupae 3d postWPP  (4878) pupae 4d postWPP  (3422) adult male 01day  (4529) adult male 05day  (5133) adult male 30day  (5134) adult female 01day  (3803) adult female 05day  (7649) adult female 30day  (7019) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  11982 embryo 02-04hr    7793 embryo 04-06hr  17894 embryo 06-08hr  18415 embryo 08-10hr  14570 embryo 10-12hr    8306 embryo 12-14hr    8474 embryo 14-16hr    3818 embryo 16-18hr    3458 embryo 18-20hr    2718 embryo 20-22hr    1923 embryo 22-24hr    2612 larva L1    2008 larva L2    1813 larva L3 12hr old    1078 larva L3 puffstage 1-2    1858 larva L3 puffstage 3-6    3153 larva L3 puffstage 7-9    5165 white prepupae new    5006 white prepupae 12hr    5511 white prepupae 24hr    6390 pupae 2d postWPP    6421 pupae 3d postWPP    4878 pupae 4d postWPP    3422 adult male 01day    4529 adult male 05day    5133 adult male 30day    5134 adult female 01day    3803 adult female 05day    7649 adult female 30day    7019 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    11982 embryo 02-04hr    7793 embryo 04-06hr    17894 embryo 06-08hr    18415 embryo 08-10hr    14570 embryo 10-12hr    8306 embryo 12-14hr    8474 embryo 14-16hr    3818 embryo 16-18hr    3458 embryo 18-20hr    2718 embryo 20-22hr    1923 embryo 22-24hr    2612 larva L1    2008 larva L2    1813 larva L3 12hr old    1078 larva L3 puffstage 1-2    1858 larva L3 puffstage 3-6    3153 larva L3 puffstage 7-9    5165 white prepupae new    5006 white prepupae 12hr    5511 white prepupae 24hr    6390 pupae 2d postWPP    6421 pupae 3d postWPP    4878 pupae 4d postWPP    3422 adult male 01day    4529 adult male 05day    5133 adult male 30day    5134 adult female 01day    3803 adult female 05day    7649 adult female 30day    7019 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0027936    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0027936 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult ovary, adult testis. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, adult midgut, larval/adult hindgut, larval Malpighian tubules, larval/adult fat body, larval/adult salivary gland, larval trachea, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0027936 expression level Tissue   Expression Level Larval Central Nervous System    471.1 Larval Midgut    98.5 Larval Hindgut    126.4 Larval Malpighian Tubules    175.8 Larval Fat Body    268.9 Larval Salivary Gland    176.8 Larval Trachea    226.125 Larval Carcass    184.15 Adult Head    136.3 Adult Eye    151.925 Adult Brain    262.4 Adult Thoracic-Abdominal Ganglion    156.1 Adult Crop    117.9 Adult Midgut    129.7 Adult Hindgut    117.7 Adult Malpighian Tubules    95.4 Adult Fat Body    117.1 Adult Salivary Gland    165.2 Adult Heart    78.9 Adult VirginFemale Spermatheca    40.2 Adult InseminatedFemale Spermatheca    39.2 Adult Ovary    739.2 Adult Testis    1211.9 Adult Male Accessory Gland    86.6 Adult Carcass    102.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    471.1 Larval Midgut    98.5 Larval Hindgut    126.4 Larval Malpighian Tubules    175.8 Larval Fat Body    268.9 Larval Salivary Gland    176.8 Larval Trachea    226.125 Larval Carcass    184.15 Adult Head    136.3 Adult Eye    151.925 Adult Brain    262.4 Adult Thoracic-Abdominal Ganglion    156.1 Adult Crop    117.9 Adult Midgut    129.7 Adult Hindgut    117.7 Adult Malpighian Tubules    95.4 Adult Fat Body    117.1 Adult Salivary Gland    165.2 Adult Heart    78.9 Adult VirginFemale Spermatheca    40.2 Adult InseminatedFemale Spermatheca    39.2 Adult Ovary  (739.2) Adult Testis  (1211.9) Adult Male Accessory Gland    86.6 Adult Carcass    102.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    471.1 Larval Midgut    98.5 Larval Hindgut    126.4 Larval Malpighian Tubules    175.8 Larval Fat Body    268.9 Larval Salivary Gland    176.8 Larval Trachea    226.125 Larval Carcass    184.15 Adult Head    136.3 Adult Eye    151.925 Adult Brain    262.4 Adult Thoracic-Abdominal Ganglion    156.1 Adult Crop    117.9 Adult Midgut    129.7 Adult Hindgut    117.7 Adult Malpighian Tubules    95.4 Adult Fat Body    117.1 Adult Salivary Gland    165.2 Adult Heart    78.9 Adult VirginFemale Spermatheca    40.2 Adult InseminatedFemale Spermatheca    39.2 Adult Ovary    739.2 Adult Testis  (1211.9) Adult Male Accessory Gland    86.6 Adult Carcass    102.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    471.1 Larval Midgut    98.5 Larval Hindgut    126.4 Larval Malpighian Tubules    175.8 Larval Fat Body    268.9 Larval Salivary Gland    176.8 Larval Trachea    226.125 Larval Carcass    184.15 Adult Head    136.3 Adult Eye    151.925 Adult Brain    262.4 Adult Thoracic-Abdominal Ganglion    156.1 Adult Crop    117.9 Adult Midgut    129.7 Adult Hindgut    117.7 Adult Malpighian Tubules    95.4 Adult Fat Body    117.1 Adult Salivary Gland    165.2 Adult Heart    78.9 Adult VirginFemale Spermatheca    40.2 Adult InseminatedFemale Spermatheca    39.2 Adult Ovary    739.2 Adult Testis    1211.9 Adult Male Accessory Gland    86.6 Adult Carcass    102.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0027936 expression level Tissue   Expression Level Larval Central Nervous System    471.1 Larval Midgut    98.5 Larval Hindgut    126.4 Larval Malpighian Tubules    175.8 Larval Fat Body    268.9 Larval Salivary Gland    176.8 Larval Trachea    226.125 Larval Carcass    184.15 Adult Head    136.3 Adult Eye    151.925 Adult Brain    262.4 Adult Thoracic-Abdominal Ganglion    156.1 Adult Crop    117.9 Adult Midgut    129.7 Adult Hindgut    117.7 Adult Malpighian Tubules    95.4 Adult Fat Body    117.1 Adult Salivary Gland    165.2 Adult Heart    78.9 Adult VirginFemale Spermatheca    40.2 Adult InseminatedFemale Spermatheca    39.2 Adult Ovary    739.2 Adult Testis    1211.9 Adult Male Accessory Gland    86.6 Adult Carcass    102.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    471.1 Larval Midgut    98.5 Larval Hindgut    126.4 Larval Malpighian Tubules    175.8 Larval Fat Body    268.9 Larval Salivary Gland    176.8 Larval Trachea    226.125 Larval Carcass    184.15 Adult Head    136.3 Adult Eye    151.925 Adult Brain    262.4 Adult Thoracic-Abdominal Ganglion    156.1 Adult Crop    117.9 Adult Midgut    129.7 Adult Hindgut    117.7 Adult Malpighian Tubules    95.4 Adult Fat Body    117.1 Adult Salivary Gland    165.2 Adult Heart    78.9 Adult VirginFemale Spermatheca    40.2 Adult InseminatedFemale Spermatheca    39.2 Adult Ovary  739.2 Adult Testis  (1211.9) Adult Male Accessory Gland    86.6 Adult Carcass    102.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    471.1 Larval Midgut    98.5 Larval Hindgut    126.4 Larval Malpighian Tubules    175.8 Larval Fat Body    268.9 Larval Salivary Gland    176.8 Larval Trachea    226.125 Larval Carcass    184.15 Adult Head    136.3 Adult Eye    151.925 Adult Brain    262.4 Adult Thoracic-Abdominal Ganglion    156.1 Adult Crop    117.9 Adult Midgut    129.7 Adult Hindgut    117.7 Adult Malpighian Tubules    95.4 Adult Fat Body    117.1 Adult Salivary Gland    165.2 Adult Heart    78.9 Adult VirginFemale Spermatheca    40.2 Adult InseminatedFemale Spermatheca    39.2 Adult Ovary    739.2 Adult Testis  1211.9 Adult Male Accessory Gland    86.6 Adult Carcass    102.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    471.1 Larval Midgut    98.5 Larval Hindgut    126.4 Larval Malpighian Tubules    175.8 Larval Fat Body    268.9 Larval Salivary Gland    176.8 Larval Trachea    226.125 Larval Carcass    184.15 Adult Head    136.3 Adult Eye    151.925 Adult Brain    262.4 Adult Thoracic-Abdominal Ganglion    156.1 Adult Crop    117.9 Adult Midgut    129.7 Adult Hindgut    117.7 Adult Malpighian Tubules    95.4 Adult Fat Body    117.1 Adult Salivary Gland    165.2 Adult Heart    78.9 Adult VirginFemale Spermatheca    40.2 Adult InseminatedFemale Spermatheca    39.2 Adult Ovary    739.2 Adult Testis    1211.9 Adult Male Accessory Gland    86.6 Adult Carcass    102.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    136.3   NA  Eye    151.925   NA  Brain    262.4   471.1  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    156.1   NA  Crop    117.9   98.5  Midgut    129.7   126.4  Hindgut    117.7   175.8  Malpighian Tubules    95.4   268.9  Fat Body    117.1   176.8  Salivary Gland    165.2   NA  Heart    78.9   226.125  Trachea    NA   NA  VirginFemale Spermatheca    40.2   NA  InseminatedFemale Spermatheca    39.2   NA  Ovary    739.2   NA  Testis    1211.9   NA  Male Accessory Gland    86.6   184.15  Carcass    102.5 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_30
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027936 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG10682-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | embryonic stage | maternal effect | recessive vih1 vih2 lethal | partially | pharate adult stage | recessive vih1 viable, with Scer\GAL4pnr-MD237 vihGD7061 Sterility Allele sterile vih2 Other Phenotypes Allele mitotic cell cycle defective vih1 wild-type, with Scer\GAL4mat.αTub67C.T:Hsim\VP16 vihmD1.Scer\UAS.P\T vihScer\UAS.P\T.cMa Phenotype manifest in Allele mitosis & nuclear chromosome vih1 mitosis & nuclear chromosome, with viha.cMa vihcMa mitosis & nuclear chromosome, with vihcMa viha.cMa mitosis & nuclear chromosome | maternal effect vih1 spindle, with viha.cMa vihcMa spindle, with vihcMa viha.cMa spindle | maternal effect vih1 vih2
Classical Alleles ( 5 )
For All Classical Alleles Show
Allele of vih Class Mutagen Stocks Known lesion vihKG02013 2 -- vihEY03666 1 -- vihMI03119 1 -- vih1 hypomorphic allele - genetic evidence 0 Yes vih2 P-element activity 0 --
Alleles Carried on Transgenic Constructs ( 9 )
For All Alleles Carried on Transgenic Constructs Show
Allele of vih Class Mutagen Stocks Known lesion vihGD7061 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes vihKK102343 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes viha.cMa in vitro construct - RNAi 0 Yes vihcMa in vitro construct - RNAi 0 Yes vihmD1.Scer\UAS.P\T in vitro construct - amino acid replacement 0 Yes vihmD1D2.Scer\UAS.P\T.T:Zzzz\His6 in vitro construct - amino acid replacement in vitro construct - coding region fusion 0 Yes vihmD2.Scer\UAS.P\T in vitro construct - amino acid replacement 0 Yes vihScer\UAS.P\T.cMa in vitro construct - regulatory fusion 0 Yes vihUbi-p63E.PM in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3L)E44 (Mathe et al., 2004) Df(3L)F10 (Mathe et al., 2004) Df(3L)iro-2 (Mathe et al., 2004)
Not disrupted in	Df(3L)vin7 (Mathe et al., 2004)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD7061} NA P{KK102343} NA P{UASp-vih.M} NA P{UASp-vih.mD1} NA P{UASp-vih.mD1D2} NA P{UASp-vih.mD2} NA characterization construct P{Ubi-p63E-vih.M} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}vihEY03666 NA miscellaneous insertions Mi{MIC}vihMI03119 NA P{SUPor-P}vihKG02013 NA insertion of enhancer trap P{lacW}vih1 No
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function
CV term Evidence References
ubiquitin-protein ligase activity inferred from direct assay (Mathe et al., 2004)
Biological Process
CV term Evidence References
regulation of cell cycle inferred from mutant phenotype (Mathe et al., 2004)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
ubiquitin-protein ligase activity inferred from sequence or structural similarity with EMBL:AF089812 (FlyBase, 1992-) non-traceable author statement (Mathe, 2001.8.15)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions vih allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 68841 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0027936 DroID - A comprehensive database of gene and protein interactions. • FBgn0027936 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 44118
Orthologs
Genome-wide drosophilid orthologs	Dana\GF10430 Dere\GG15578 Dgri\GH14710 Dmoj\GI12257 Dper\GL25195 Dpse\GA10491 Dsec\GM25349 Dsim\GD14382 Dvir\GJ11488 Dwil\GK12523 Dyak\GE21906
Curated drosophilid orthologs	Dpse\GA10491
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL006728-PA Aedes aegypti (mosquito) AGAP006238-PA Anopheles gambiae (mosquito) XP_394467.1 Apis mellifera (honey bee) XP_001943382.1 Acyrthosiphon pisum (pea aphid) At3g20060.1 Arabidopsis thaliana (wall cress) 85114 Batrachochytrium dendrobatidis (chytrid fungus) 60854 Branchiostoma floridae (lancelet) BGIBMGA009118-PA Bombyx mori (silk worm) ENSBTAP00000022264 Bos taurus (bovine) ENSCAFP00000014322 Canis familiaris (dog) ENSCINP00000018235 Ciona intestinalis (sea squirt) CMP181C Cyanidioschyzon merolae (red alga) CPIJ011393 Culex pipens (mosquito) ENSCPOP00000012702 Cavia porcellus (guinea pig) ENSCSAVP00000003384 Ciona savignyi (sedentary tunicate) 168305 Capitella spl (polychaete worm) DDB0206182 Dictyostelium discoideum (amoeba) 231104 Daphnia pulex (daphnia) ENSDARP00000051905 Danio rerio (zebra fish) ENSECAP00000012425 Equus caballus (horse) ENSGACP00000004323 Gymnopilus aculeatus (mushroom) 156207 Hypsipyla robusta (cedar shoot borer) ENSP00000348838 Homo sapiens (human) ISCW019982-PA Ixodes scapularis (deer tick) 163624 Lottia gigantea (owl limpet) LmjF24.2130 Leishmania major (virus) 32460 Monocosta brevicollis (choanoflagellate) ENSMODP00000017087 Monodelphis domestica (gray opossum) ENSMMUP00000027666 Macaca mulatta (rhesus monkey) ENSMUSP00000085581 Mus musculus (house mouse) 237281 Nematostella vectensis (starlet anemone) XP_001603514.1 Nasonia vitripennis (wasp) ENSORLP00000011701 Oryzias latipes (japanese killifish) LOC_Os01g16650.1 Oryza sativa (asian rice) 26053 Ostreococcus tauri (green alga) PHUM002477-PA Pediculus humanus (human body louse) 110248 Physcomitrella patens (moss) ENSPPYP00000012370 Pongo pygmaeus (orangutan) 557890 Populus trichocarpa (black cottonwood) ENSPTRP00000023301 Pan troglodytes (chimpanzee) ENSRNOP00000020323 Rattus norvegicus (norway rat) 5058979 Sorghum bicolor (sorghum) YOR339C Saccharomyces cerevisiae (budding yeast) Smp_051010 Schistosoma mansoni (trematode parasite) SPCC1259.15c Schizosaccharomyces pombe (fission yeast) XP_001175827.1 Strongylocentrotus purpuratus (purple sea urchin) 55577 Trichoplax adhaerens (metazoa) XP_970059.1 Tribolium castaneum (red flour beetle) Tc00.1047053511071.70 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053511903.30 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000005562 Tetraodon nigroviridis (green spotted pufferfish) ENSXETP00000032550 Xenopus tropicalis (frog) YALI0F05764g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB19304 NV11377 LH14599 ISCW019982 FBgn0239145 FBgn0214533 FBgn0198746 FBgn0186065 FBgn0180207 JGI_V11_231104 FBgn0070548 FBgn0162779 FBgn0135014 FBgn0122186 FBgn0107824 FBgn0087471 CPIJ011393 BGIBMGA009118 ACYPI000705 GB12779 AGAP006238 AAEL006728 PHUM244080 GLEAN_08974
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	36198 y1 w*; Mi{MIC}vihMI03119 16570 y1 w67c23; P{EPgy2}vihEY03666 14254 y1; P{SUPor-P}vihKG02013 ry506/TM3, Sb1 Ser1
Kyoto	111589 yd2 w1118 P{ey-FLP.N}2 P{GMR-lacZ.C(38.1)}TPN1; P{SUPor-P}vihKG02013 P{neoFRT}80B/TM6B, P{Car20y}TPN1, Tb1
VDRC	v107720 P{KK102343}VIE-260B v27306 w1118; P{GD7061}v27306
Genomic Clones ( 1 )
	BACR48G06 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 70 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	IP01717
Other clones	DPiM_IP01717
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	2276 9937 32032 37567 38145 64695 66548 74544 82638 100072 157944 191420 214545.44 bs27f02 bs59c04 bs75b10 CK01.55B.F9 Dmel_dig_015100_0607_2036 EC26619 EK045023 EK109239 EK123545 EK142352 EK149504 EK150820 EK155913 EK169109 EK192928 EK194324 EK216026 EK260863 EP01003 EP16027 FGM225F03 FGM322G01 IP01720 RP004005684 RP004082537 RP004163255 RP004212907 RP004216948 RP004218227 RP004222706 RP004230295 RP004231598 RP004235972 RP004236553 RP004237195 RP004240214 RP004246089 RP004247684 RP004251381 RP004253862 RP004253867 RP004256236 RP004256886 RP004257925 RP004259913 RP004260679 RP004261334 RP004340304 RP004368074 RP004401154 RP004404501 RP004430116 RP004459891 RP004472390 RP004539578
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0027936 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 44118
Antibody Information
Other Information
Discoverer
Etymology
	The gene is named "vihar" (Hungarian for "storm") after the characteristic mutant phenotype in which chromosomes are scattered throughout the mitotic spindle. (Mathe et al., 2004)
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: vih anon-WO0172774.54 anon-WO0172774.55 anon-WO0172774.56 (FlyBase, 1996-) Source for merge of: vihar CG10682 (FlyBase, 1996-)
Additional comments	Source for merge of vih anon-WO0172774.54 anon-WO0172774.55 anon-WO0172774.56 was sequence comparison (date:051113). (FlyBase, 1996-) Source for merge of vihar CG10682 was sequence comparison (date:011219). (FlyBase, 1996-)
Other Comments
	RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004) Reduction of vih function results in an accumulation of cells in a metaphase-like state. (Mathe et al., 2004) Centrosomes are released from the poles of both cleavage embryo and neuroblast spindles in vih mutants, but anastral and acentrosomal spindles remain relatively stable. These acentrosomal and anastral spindles develop two broad spindle poles, and the chromosomes become overcondensed and scattered throughout these barrel-like bipolar spindles. (Mathe and Glover, 1999)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_140325 RefSeq (Proteins) • NP_648582 DDBJ / EMBL / GenBank • AAF49909 AAL02117 AF410850 AI946542 AX260092 AX260093 AX260094 Entrez Gene - A searchable database of RefSeq genes. • 44118 UniProtKB/TrEMBL • Q9VTY6
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ubiquitin-conjugating enzyme, E2 (IPR000608) Ubiquitin-conjugating enzyme/RWD-like (IPR016135) Ubiquitin-conjugating enzyme, active site (IPR023313)
Linkouts
	BioGRID - A database of protein and genetic interactions • 68841 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0027936 DroID - A comprehensive database of gene and protein interactions. • FBgn0027936 DRSC - Results from RNAi screens. • FBgn0027936 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0027936 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG10682-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0027936 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 44118 InParanoid A subset of ortholog calls from InParanoid. • AAEL006728-PA Aedes aegypti (mosquito) AGAP006238-PA Anopheles gambiae (mosquito) XP_394467.1 Apis mellifera (honey bee) XP_001943382.1 Acyrthosiphon pisum (pea aphid) At3g20060.1 Arabidopsis thaliana (wall cress) 85114 Batrachochytrium dendrobatidis (chytrid fungus) 60854 Branchiostoma floridae (lancelet) BGIBMGA009118-PA Bombyx mori (silk worm) ENSBTAP00000022264 Bos taurus (bovine) ENSCAFP00000014322 Canis familiaris (dog) ENSCINP00000018235 Ciona intestinalis (sea squirt) CMP181C Cyanidioschyzon merolae (red alga) CPIJ011393 Culex pipens (mosquito) ENSCPOP00000012702 Cavia porcellus (guinea pig) ENSCSAVP00000003384 Ciona savignyi (sedentary tunicate) 168305 Capitella spl (polychaete worm) DDB0206182 Dictyostelium discoideum (amoeba) 231104 Daphnia pulex (daphnia) ENSDARP00000051905 Danio rerio (zebra fish) ENSECAP00000012425 Equus caballus (horse) ENSGACP00000004323 Gymnopilus aculeatus (mushroom) 156207 Hypsipyla robusta (cedar shoot borer) ENSP00000348838 Homo sapiens (human) ISCW019982-PA Ixodes scapularis (deer tick) 163624 Lottia gigantea (owl limpet) LmjF24.2130 Leishmania major (virus) 32460 Monocosta brevicollis (choanoflagellate) ENSMODP00000017087 Monodelphis domestica (gray opossum) ENSMMUP00000027666 Macaca mulatta (rhesus monkey) ENSMUSP00000085581 Mus musculus (house mouse) 237281 Nematostella vectensis (starlet anemone) XP_001603514.1 Nasonia vitripennis (wasp) ENSORLP00000011701 Oryzias latipes (japanese killifish) LOC_Os01g16650.1 Oryza sativa (asian rice) 26053 Ostreococcus tauri (green alga) PHUM002477-PA Pediculus humanus (human body louse) 110248 Physcomitrella patens (moss) ENSPPYP00000012370 Pongo pygmaeus (orangutan) 557890 Populus trichocarpa (black cottonwood) ENSPTRP00000023301 Pan troglodytes (chimpanzee) ENSRNOP00000020323 Rattus norvegicus (norway rat) 5058979 Sorghum bicolor (sorghum) YOR339C Saccharomyces cerevisiae (budding yeast) Smp_051010 Schistosoma mansoni (trematode parasite) SPCC1259.15c Schizosaccharomyces pombe (fission yeast) XP_001175827.1 Strongylocentrotus purpuratus (purple sea urchin) 55577 Trichoplax adhaerens (metazoa) XP_970059.1 Tribolium castaneum (red flour beetle) Tc00.1047053511071.70 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053511903.30 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000005562 Tetraodon nigroviridis (green spotted pufferfish) ENSXETP00000032550 Xenopus tropicalis (frog) YALI0F05764g Yarrowia lipolytica (nonconventional yeast) Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution • /sturtevant/vihar1.htm InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 44118 modMine - Data generated by the modENCODE project. • FBgn0027936 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB19304 NV11377 LH14599 ISCW019982 FBgn0239145 FBgn0214533 FBgn0198746 FBgn0186065 FBgn0180207 JGI_V11_231104 FBgn0070548 FBgn0162779 FBgn0135014 FBgn0122186 FBgn0107824 FBgn0087471 CPIJ011393 BGIBMGA009118 ACYPI000705 GB12779 AGAP006238 AAEL006728 PHUM244080 GLEAN_08974
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	anon-WO0172774.54   anon-WO0172774.55   anon-WO0172774.56   CG10682 (Boutros et al., 2004, Keleman et al., 2009.8.5) vih (Franco et al., 2011)
Name Synonym	vihar (Mathe et al., 2004, Mathe and Glover, 1999, Pines, 2006, Li et al., 2007)
Secondary FlyBase IDs
	FBgn0036293 FBgn0046375 FBgn0046376 FBgn0046377
References ( 23 )
Generate a list of	All references relating to this gene ( 23 )
List References by type	Research paper  ( 3 ) Supplementary material  ( 4 ) Review  ( 1 ) Personal communication to FlyBase  ( 5 ) Abstract  ( 2 ) FlyBase analysis  ( 3 ) DNA/RNA sequence record  ( 1 ) Computer file  ( 1 ) Patent  ( 1 ) Automatic genome annotation  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 1 )
	Franco et al., 2011, Mol. Cell. Proteomics 10(5): M110.002188 A Novel Strategy to Isolate Ubiquitin Conjugates Reveals Wide Role for Ubiquitination during Neural Development. [FBrf0213919] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2010 Show reviews ...