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Gene Dmel\l(1)G0289

General Information
Symbol	Dmel\l(1)G0289	Species	D. melanogaster
Name	lethal (1) G0289	Annotation symbol	CG2221
Feature type	protein_coding_gene	FlyBase ID	FBgn0028331
Gene Model Status	Current	Stock availability	15 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	9B11-9B12	Sequence location	X:10,251,203..10,260,346 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene lethal (1) G0289 is referred to in FlyBase by the symbol Dmel\l(1)G0289 (CG2221, FBgn0028331). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 14 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has one annotated transcript and one annotated polypeptide. Protein features are: Plexin; Plexin/semaphorin/integrin. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of high expression. Peak expression observed within 00-06 and 12-18 hour embryonic stages, during late larval stages, during early pupal stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval salivary gland, larval trachea, adult female reproductive system, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval central nervous system, larval/adult fat body, adult salivary gland, adult male accessory gland, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1628453_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of l(1)G0289. Gene sequence location is X:10251203..10260346.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01	Sequence features BKN22836 HFA18215
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 9B11-9B12   Limits computationally determined from genome sequence between P{EP}α-Man-IEP1628&P{EP}α-Man-IEP1307 and P{EP}l(1)G0289EP379
Experimentally Determined Cytological Location
Cytogenetic map Notes References 9C-9C   (determined by in situ hybridisation)   (Peter et al., 2002) 9C-9C   (determined by in situ hybridisation)   (Schaefer et al., 1999.8.12)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\l(1)G0289 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) l(1)G0289-RA FBtr0071470  NM_132393   2555   625
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein l(1)G0289-PA   FBpp0071404   67.3   625   7.03     NP_572621   AAF46578
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Plexin (IPR002165) Plexin/semaphorin/integrin (IPR003659)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201668   AA246366   AA246491   AA263187   AA264017   AA264763   AA264938   AA390654   AA391139   AA391550   AA391975   AA392318   AA392881   AA392895   AA438569   AA439901   AA441310   AA441550   AA536383   AA538888   AA539297   AA540403   AA541126   AA567829   AA695265   AA695873   AA696569   AA696956   AA697219   AA698008   AA699068   AA735276   AA802225   AA802686   AA803378   AA816727   AA816944   AA817094   AA817624   AA817645   AA820876   AA940948   AA942518   AA948913   AA949312   AA950321   AA950656   AA978840   AE014298 AAF46578   AI061693   AI062100   AI062537   AI063206   AI135794   AI294269   AI294484   AI296567   AI297447   AI404226   AI406088   AI455729   AI455974   AI456626   AI512082   AI512579   AI512913   AI513396   AI514606   AI515301   AI515532   AI516367   AI516487   AI516785   AI518587   AI518737   AI519393   AI519737   AI520521   AI531514   AI532207   AI544098   AI544152   AI546441   AJ426822   AQ025327   AW943527   AY069641 AAL39786   BF488686   BF494891   BF499525   BF500797   BG634494   BG636130   BH011358   BI168089   BI168379   BI168568   BI172094   BI214641   BI215748   BI216099   BI230850   BI234524   BI236086   BI237148   BI239632   BI241296   BI243570   BI357993   BI362246   BI366412   BI366649   BI366766   BI369047   BI369199   BI369756   BI370559   BI483959   BI485570   BI486224   BI486325   BI564045   BI566098   BI566280   BI567402   BI567781   BI568414   BI570437   BI570647   BI571667   BI572368   BI572805   BI572809   BI574386   BI574763   BI574918   BI576980   BI577040   BI580370   BI580661   BI582751   BI582784   BI583180   BI583864   BI584646   BI585830   BI586083   BI586355   BI586926   BI587189   BI587988   BI588347   BI589405   BI589709   BI590765   BI590861   BI590919   BI591086   BI591523   BI591899   BI604951   BI604962   BI605047   BI605410   BI605417   BI605420   BI605506   BI605654   BI606066   BI606882   BI609838   BI609924   BI609971   BI610952   BI611014   BI611937   BI612999   BI613822   BI617301   BI619485   BI621226   BI621730   BI622602   BI623808   BI624902   BI625212   BI625958   BI627505   BI627773   BI628959   BI629072   BI629746   BI629817   BI629930   BI631455   BI633013   BI633278   BI634280   BI634721   BI634933   BI638119   BI640561   BI641060   BP542851   BP542852   BP548591   BP551564   BP551565   BP553905   BP553906   BQ103569   BT083419   CK131839   CK661102   CL632199   CO156298   CO184593   CO189668   CO269198   CO302424   CO304181   CO311604   CO313068   CO338207   CO344217   CZ472431   EC059651   EC076269   EC076360   EC195446   EC202602   EC213929   EC234532   EC247708   EC255075   EC265102   EC265292   EV577605   EV585679   EV597024   EV597067
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9W2V9
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage   epithelial cell   • cytoplasm | basal (Lecuyer et al., 2007) epithelium   • cytoplasm | basal (Lecuyer et al., 2007)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0028331    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0028331 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of high expression. Peak expression observed within 00-06 and 12-18 hour embryonic stages, during late larval stages, during early pupal stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0028331 expression level Developmental Stage   Expression Level embryo 00-02hr    15231 embryo 02-04hr    19380 embryo 04-06hr    10392 embryo 06-08hr    4915 embryo 08-10hr    7047 embryo 10-12hr    9080 embryo 12-14hr    8567 embryo 14-16hr    14402 embryo 16-18hr    10021 embryo 18-20hr    7354 embryo 20-22hr    6765 embryo 22-24hr    6712 larva L1    5720 larva L2    4533 larva L3 12hr old    5032 larva L3 puffstage 1-2    6297 larva L3 puffstage 3-6    10164 larva L3 puffstage 7-9    9834 white prepupae new    12010 white prepupae 12hr    10101 white prepupae 24hr    8614 pupae 2d postWPP    6184 pupae 3d postWPP    4276 pupae 4d postWPP    5059 adult male 01day    5777 adult male 05day    5263 adult male 30day    5677 adult female 01day    12763 adult female 05day    10183 adult female 30day    9965 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (15231) embryo 02-04hr  (19380) embryo 04-06hr  (10392) embryo 06-08hr  (4915) embryo 08-10hr  (7047) embryo 10-12hr  (9080) embryo 12-14hr  (8567) embryo 14-16hr  (14402) embryo 16-18hr  (10021) embryo 18-20hr  (7354) embryo 20-22hr  (6765) embryo 22-24hr  (6712) larva L1  (5720) larva L2  (4533) larva L3 12hr old  (5032) larva L3 puffstage 1-2  (6297) larva L3 puffstage 3-6  (10164) larva L3 puffstage 7-9  (9834) white prepupae new  (12010) white prepupae 12hr  (10101) white prepupae 24hr  (8614) pupae 2d postWPP  (6184) pupae 3d postWPP  (4276) pupae 4d postWPP  (5059) adult male 01day  (5777) adult male 05day  (5263) adult male 30day  (5677) adult female 01day  (12763) adult female 05day  (10183) adult female 30day  (9965) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (15231) embryo 02-04hr  (19380) embryo 04-06hr  (10392) embryo 06-08hr  (4915) embryo 08-10hr  (7047) embryo 10-12hr  (9080) embryo 12-14hr  (8567) embryo 14-16hr  (14402) embryo 16-18hr  (10021) embryo 18-20hr  (7354) embryo 20-22hr  (6765) embryo 22-24hr  (6712) larva L1  (5720) larva L2  (4533) larva L3 12hr old  (5032) larva L3 puffstage 1-2  (6297) larva L3 puffstage 3-6  (10164) larva L3 puffstage 7-9  (9834) white prepupae new  (12010) white prepupae 12hr  (10101) white prepupae 24hr  (8614) pupae 2d postWPP  (6184) pupae 3d postWPP  (4276) pupae 4d postWPP  (5059) adult male 01day  (5777) adult male 05day  (5263) adult male 30day  (5677) adult female 01day  (12763) adult female 05day  (10183) adult female 30day  (9965) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (15231) embryo 02-04hr  (19380) embryo 04-06hr  10392 embryo 06-08hr    4915 embryo 08-10hr    7047 embryo 10-12hr    9080 embryo 12-14hr    8567 embryo 14-16hr  (14402) embryo 16-18hr  10021 embryo 18-20hr    7354 embryo 20-22hr    6765 embryo 22-24hr    6712 larva L1    5720 larva L2    4533 larva L3 12hr old    5032 larva L3 puffstage 1-2    6297 larva L3 puffstage 3-6  10164 larva L3 puffstage 7-9    9834 white prepupae new  (12010) white prepupae 12hr  10101 white prepupae 24hr    8614 pupae 2d postWPP    6184 pupae 3d postWPP    4276 pupae 4d postWPP    5059 adult male 01day    5777 adult male 05day    5263 adult male 30day    5677 adult female 01day  (12763) adult female 05day  10183 adult female 30day    9965 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    15231 embryo 02-04hr    19380 embryo 04-06hr    10392 embryo 06-08hr    4915 embryo 08-10hr    7047 embryo 10-12hr    9080 embryo 12-14hr    8567 embryo 14-16hr    14402 embryo 16-18hr    10021 embryo 18-20hr    7354 embryo 20-22hr    6765 embryo 22-24hr    6712 larva L1    5720 larva L2    4533 larva L3 12hr old    5032 larva L3 puffstage 1-2    6297 larva L3 puffstage 3-6    10164 larva L3 puffstage 7-9    9834 white prepupae new    12010 white prepupae 12hr    10101 white prepupae 24hr    8614 pupae 2d postWPP    6184 pupae 3d postWPP    4276 pupae 4d postWPP    5059 adult male 01day    5777 adult male 05day    5263 adult male 30day    5677 adult female 01day    12763 adult female 05day    10183 adult female 30day    9965 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0028331 expression level Developmental Stage   Expression Level embryo 00-02hr    15231 embryo 02-04hr    19380 embryo 04-06hr    10392 embryo 06-08hr    4915 embryo 08-10hr    7047 embryo 10-12hr    9080 embryo 12-14hr    8567 embryo 14-16hr    14402 embryo 16-18hr    10021 embryo 18-20hr    7354 embryo 20-22hr    6765 embryo 22-24hr    6712 larva L1    5720 larva L2    4533 larva L3 12hr old    5032 larva L3 puffstage 1-2    6297 larva L3 puffstage 3-6    10164 larva L3 puffstage 7-9    9834 white prepupae new    12010 white prepupae 12hr    10101 white prepupae 24hr    8614 pupae 2d postWPP    6184 pupae 3d postWPP    4276 pupae 4d postWPP    5059 adult male 01day    5777 adult male 05day    5263 adult male 30day    5677 adult female 01day    12763 adult female 05day    10183 adult female 30day    9965 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (15231) embryo 02-04hr  (19380) embryo 04-06hr  (10392) embryo 06-08hr  (4915) embryo 08-10hr  (7047) embryo 10-12hr  (9080) embryo 12-14hr  (8567) embryo 14-16hr  (14402) embryo 16-18hr  (10021) embryo 18-20hr  (7354) embryo 20-22hr  (6765) embryo 22-24hr  (6712) larva L1  (5720) larva L2  (4533) larva L3 12hr old  (5032) larva L3 puffstage 1-2  (6297) larva L3 puffstage 3-6  (10164) larva L3 puffstage 7-9  (9834) white prepupae new  (12010) white prepupae 12hr  (10101) white prepupae 24hr  (8614) pupae 2d postWPP  (6184) pupae 3d postWPP  (4276) pupae 4d postWPP  (5059) adult male 01day  (5777) adult male 05day  (5263) adult male 30day  (5677) adult female 01day  (12763) adult female 05day  (10183) adult female 30day  (9965) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (15231) embryo 02-04hr  (19380) embryo 04-06hr  (10392) embryo 06-08hr  (4915) embryo 08-10hr  (7047) embryo 10-12hr  (9080) embryo 12-14hr  (8567) embryo 14-16hr  (14402) embryo 16-18hr  (10021) embryo 18-20hr  (7354) embryo 20-22hr  (6765) embryo 22-24hr  (6712) larva L1  (5720) larva L2  (4533) larva L3 12hr old  (5032) larva L3 puffstage 1-2  (6297) larva L3 puffstage 3-6  (10164) larva L3 puffstage 7-9  (9834) white prepupae new  (12010) white prepupae 12hr  (10101) white prepupae 24hr  (8614) pupae 2d postWPP  (6184) pupae 3d postWPP  (4276) pupae 4d postWPP  (5059) adult male 01day  (5777) adult male 05day  (5263) adult male 30day  (5677) adult female 01day  (12763) adult female 05day  (10183) adult female 30day  (9965) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  15231 embryo 02-04hr  19380 embryo 04-06hr  10392 embryo 06-08hr    4915 embryo 08-10hr    7047 embryo 10-12hr    9080 embryo 12-14hr    8567 embryo 14-16hr  14402 embryo 16-18hr  10021 embryo 18-20hr    7354 embryo 20-22hr    6765 embryo 22-24hr    6712 larva L1    5720 larva L2    4533 larva L3 12hr old    5032 larva L3 puffstage 1-2    6297 larva L3 puffstage 3-6  10164 larva L3 puffstage 7-9    9834 white prepupae new  12010 white prepupae 12hr  10101 white prepupae 24hr    8614 pupae 2d postWPP    6184 pupae 3d postWPP    4276 pupae 4d postWPP    5059 adult male 01day    5777 adult male 05day    5263 adult male 30day    5677 adult female 01day  12763 adult female 05day  10183 adult female 30day    9965 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    15231 embryo 02-04hr    19380 embryo 04-06hr    10392 embryo 06-08hr    4915 embryo 08-10hr    7047 embryo 10-12hr    9080 embryo 12-14hr    8567 embryo 14-16hr    14402 embryo 16-18hr    10021 embryo 18-20hr    7354 embryo 20-22hr    6765 embryo 22-24hr    6712 larva L1    5720 larva L2    4533 larva L3 12hr old    5032 larva L3 puffstage 1-2    6297 larva L3 puffstage 3-6    10164 larva L3 puffstage 7-9    9834 white prepupae new    12010 white prepupae 12hr    10101 white prepupae 24hr    8614 pupae 2d postWPP    6184 pupae 3d postWPP    4276 pupae 4d postWPP    5059 adult male 01day    5777 adult male 05day    5263 adult male 30day    5677 adult female 01day    12763 adult female 05day    10183 adult female 30day    9965 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0028331    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0028331 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult eye, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval salivary gland, larval trachea, adult female reproductive system, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval central nervous system, larval/adult fat body, adult salivary gland, adult male accessory gland, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0028331 expression level Tissue   Expression Level Larval Central Nervous System    368.3 Larval Midgut    933.3 Larval Hindgut    587.5 Larval Malpighian Tubules    1982.4 Larval Fat Body    273 Larval Salivary Gland    1694.9 Larval Trachea    1409.8 Larval Carcass    519.8 Adult Head    468.8 Adult Eye    2528.675 Adult Brain    642.6 Adult Thoracic-Abdominal Ganglion    693.1 Adult Crop    1074.6 Adult Midgut    543.5 Adult Hindgut    628.1 Adult Malpighian Tubules    1596 Adult Fat Body    327.7 Adult Salivary Gland    423.7 Adult Heart    1349 Adult VirginFemale Spermatheca    1010.8 Adult InseminatedFemale Spermatheca    1123 Adult Ovary    756.4 Adult Testis    67.2 Adult Male Accessory Gland    181.6 Adult Carcass    417.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    368.3 Larval Midgut  (933.3) Larval Hindgut  (587.5) Larval Malpighian Tubules  (1982.4) Larval Fat Body    273 Larval Salivary Gland  (1694.9) Larval Trachea  (1409.8) Larval Carcass  519.8 Adult Head    468.8 Adult Eye  (2528.675) Adult Brain  (642.6) Adult Thoracic-Abdominal Ganglion  (693.1) Adult Crop  (1074.6) Adult Midgut  (543.5) Adult Hindgut  (628.1) Adult Malpighian Tubules  (1596) Adult Fat Body    327.7 Adult Salivary Gland    423.7 Adult Heart  (1349) Adult VirginFemale Spermatheca  (1010.8) Adult InseminatedFemale Spermatheca  (1123) Adult Ovary  (756.4) Adult Testis    67.2 Adult Male Accessory Gland    181.6 Adult Carcass    417.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    368.3 Larval Midgut    933.3 Larval Hindgut    587.5 Larval Malpighian Tubules  (1982.4) Larval Fat Body    273 Larval Salivary Gland  (1694.9) Larval Trachea  (1409.8) Larval Carcass    519.8 Adult Head    468.8 Adult Eye  (2528.675) Adult Brain    642.6 Adult Thoracic-Abdominal Ganglion    693.1 Adult Crop  1074.6 Adult Midgut    543.5 Adult Hindgut    628.1 Adult Malpighian Tubules  (1596) Adult Fat Body    327.7 Adult Salivary Gland    423.7 Adult Heart  (1349) Adult VirginFemale Spermatheca  1010.8 Adult InseminatedFemale Spermatheca  (1123) Adult Ovary    756.4 Adult Testis    67.2 Adult Male Accessory Gland    181.6 Adult Carcass    417.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    368.3 Larval Midgut    933.3 Larval Hindgut    587.5 Larval Malpighian Tubules    1982.4 Larval Fat Body    273 Larval Salivary Gland    1694.9 Larval Trachea    1409.8 Larval Carcass    519.8 Adult Head    468.8 Adult Eye    2528.675 Adult Brain    642.6 Adult Thoracic-Abdominal Ganglion    693.1 Adult Crop    1074.6 Adult Midgut    543.5 Adult Hindgut    628.1 Adult Malpighian Tubules    1596 Adult Fat Body    327.7 Adult Salivary Gland    423.7 Adult Heart    1349 Adult VirginFemale Spermatheca    1010.8 Adult InseminatedFemale Spermatheca    1123 Adult Ovary    756.4 Adult Testis    67.2 Adult Male Accessory Gland    181.6 Adult Carcass    417.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0028331 expression level Tissue   Expression Level Larval Central Nervous System    368.3 Larval Midgut    933.3 Larval Hindgut    587.5 Larval Malpighian Tubules    1982.4 Larval Fat Body    273 Larval Salivary Gland    1694.9 Larval Trachea    1409.8 Larval Carcass    519.8 Adult Head    468.8 Adult Eye    2528.675 Adult Brain    642.6 Adult Thoracic-Abdominal Ganglion    693.1 Adult Crop    1074.6 Adult Midgut    543.5 Adult Hindgut    628.1 Adult Malpighian Tubules    1596 Adult Fat Body    327.7 Adult Salivary Gland    423.7 Adult Heart    1349 Adult VirginFemale Spermatheca    1010.8 Adult InseminatedFemale Spermatheca    1123 Adult Ovary    756.4 Adult Testis    67.2 Adult Male Accessory Gland    181.6 Adult Carcass    417.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    368.3 Larval Midgut  (933.3) Larval Hindgut  587.5 Larval Malpighian Tubules  (1982.4) Larval Fat Body    273 Larval Salivary Gland  (1694.9) Larval Trachea  (1409.8) Larval Carcass  519.8 Adult Head    468.8 Adult Eye  (2528.675) Adult Brain  642.6 Adult Thoracic-Abdominal Ganglion  693.1 Adult Crop  (1074.6) Adult Midgut  543.5 Adult Hindgut  628.1 Adult Malpighian Tubules  (1596) Adult Fat Body    327.7 Adult Salivary Gland    423.7 Adult Heart  (1349) Adult VirginFemale Spermatheca  (1010.8) Adult InseminatedFemale Spermatheca  (1123) Adult Ovary  756.4 Adult Testis    67.2 Adult Male Accessory Gland    181.6 Adult Carcass    417.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    368.3 Larval Midgut    933.3 Larval Hindgut    587.5 Larval Malpighian Tubules  (1982.4) Larval Fat Body    273 Larval Salivary Gland  1694.9 Larval Trachea  1409.8 Larval Carcass    519.8 Adult Head    468.8 Adult Eye  (2528.675) Adult Brain    642.6 Adult Thoracic-Abdominal Ganglion    693.1 Adult Crop  1074.6 Adult Midgut    543.5 Adult Hindgut    628.1 Adult Malpighian Tubules  1596 Adult Fat Body    327.7 Adult Salivary Gland    423.7 Adult Heart  1349 Adult VirginFemale Spermatheca  1010.8 Adult InseminatedFemale Spermatheca  1123 Adult Ovary    756.4 Adult Testis    67.2 Adult Male Accessory Gland    181.6 Adult Carcass    417.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    368.3 Larval Midgut    933.3 Larval Hindgut    587.5 Larval Malpighian Tubules    1982.4 Larval Fat Body    273 Larval Salivary Gland    1694.9 Larval Trachea    1409.8 Larval Carcass    519.8 Adult Head    468.8 Adult Eye    2528.675 Adult Brain    642.6 Adult Thoracic-Abdominal Ganglion    693.1 Adult Crop    1074.6 Adult Midgut    543.5 Adult Hindgut    628.1 Adult Malpighian Tubules    1596 Adult Fat Body    327.7 Adult Salivary Gland    423.7 Adult Heart    1349 Adult VirginFemale Spermatheca    1010.8 Adult InseminatedFemale Spermatheca    1123 Adult Ovary    756.4 Adult Testis    67.2 Adult Male Accessory Gland    181.6 Adult Carcass    417.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    468.8   NA  Eye    2528.675   NA  Brain    642.6   368.3  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    693.1   NA  Crop    1074.6   933.3  Midgut    543.5   587.5  Hindgut    628.1   1982.4  Malpighian Tubules    1596   273  Fat Body    327.7   1694.9  Salivary Gland    423.7   NA  Heart    1349   1409.8  Trachea    NA   NA  VirginFemale Spermatheca    1010.8   NA  InseminatedFemale Spermatheca    1123   NA  Ovary    756.4   NA  Testis    67.2   NA  Male Accessory Gland    181.6   519.8  Carcass    417.1 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_27
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0028331 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG2221-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for l(1)G0289 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | larval stage l(1)G0289G0289 lethal | recessive l(1)G0289G0289 viable l(1)G0289EY09849 viable, with Scer\GAL4pnr-MD237 l(1)G0289GD6 l(1)G0289GD2502 l(1)G0289GD14489 Sterility Allele fertile l(1)G0289EY09849 Other Phenotypes Allele body color defective, with Scer\GAL4pnr-MD237 l(1)G0289GD2502 Phenotype manifest in Allele mesothoracic tergum, with Scer\GAL4pnr-MD237 l(1)G0289GD2502
Classical Alleles ( 8 )
For All Classical Alleles Show
Allele of l(1)G0289 Class Mutagen Stocks Known lesion l(1)G0289G0289 P-element activity 2 -- l(1)G02895-HA-1186 1 -- l(1)G0289BG00227 P-element activity 1 -- l(1)G0289d01761 P-element activity 1 -- l(1)G0289EP379 P-element activity 1 -- l(1)G0289EY09849 P-element activity 1 -- l(1)G02895-HA-2247 0 -- l(1)G0289GG01741 0 --
Alleles Carried on Transgenic Constructs ( 6 )
For All Alleles Carried on Transgenic Constructs Show
Allele of l(1)G0289 Class Mutagen Stocks Known lesion l(1)G0289GD2502 in vitro construct - RNAi in vitro construct - regulatory fusion 3 Yes l(1)G0289GD14489 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes l(1)G0289GD6 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes l(1)G0289HMS00558 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes l(1)G0289HMS00700 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes l(1)G0289KK102740 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD6} NA P{GD2502} NA P{GD14489} NA P{KK102740} NA P{TRiP.HMS00558} NA P{TRiP.HMS00700} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}l(1)G0289EP379 NA P{EPgy2}l(1)G0289EY09849 NA P{Mae-UAS.6.11}l(1)G0289GG01741 NA P{XP}l(1)G0289d01761 NA miscellaneous insertions P{GT1}l(1)G0289BG00227 NA P{RS5}l(1)G02895-HA-1186 NA P{RS5}l(1)G02895-HA-2247 NA insertion of enhancer trap P{lacW}l(1)G0289G0289 No
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function ( 0 terms)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
membrane inferred from electronic annotation with InterPro:IPR002165 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions l(1)G0289 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 58396 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0028331 DroID - A comprehensive database of gene and protein interactions. • FBgn0028331 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31964
Orthologs
Genome-wide drosophilid orthologs	Dana\GF19563 Dere\GG18929 Dgri\GH12720 Dmoj\GI15396 Dper\GL26788 Dpse\GA15310 Dsec\GM11320 Dsim\GD16040 Dvir\GJ14794 Dwil\GK10263 Dyak\GE15399
Curated drosophilid orthologs	Dpse\GA15310
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL011063-PA Aedes aegypti (mosquito) AGAP004689-PA Anopheles gambiae (mosquito) XP_001945865.1 Acyrthosiphon pisum (pea aphid) 106324 Branchiostoma floridae (lancelet) 83501 Branchiostoma floridae (lancelet) XP_001894877.1 Brugia malayi (roundworm nematode) BGIBMGA002024-PA Bombyx mori (silk worm) ENSBTAP00000012472 Bos taurus (bovine) CN22175 Caenorhabditis brenneri (small nematode) CBP27000 Caenorhabditis briggsae (nematode) CE30889 Caenorhabditis elegans (worm) ENSCAFP00000006098 Canis familiaris (dog) JA02137 Caenorhabditis japonica (nematode) CPIJ004476 Culex pipens (mosquito) ENSCPOP00000006578 Cavia porcellus (guinea pig) RP11208 Caenorhabditis remanei (nematode) 229007 Capitella spl (polychaete worm) 306515 Daphnia pulex (daphnia) ENSDARP00000078356 Danio rerio (zebra fish) ENSECAP00000015262 Equus caballus (horse) ENSGACP00000005267 Gymnopilus aculeatus (mushroom) ENSGALP00000012907 Gallus gallus (chicken) 109381 Hypsipyla robusta (cedar shoot borer) ENSP00000366460 Homo sapiens (human) ISCW007901-PA Ixodes scapularis (deer tick) 29073 Monocosta brevicollis (choanoflagellate) ENSMODP00000011529 Monodelphis domestica (gray opossum) ENSMMUP00000020153 Macaca mulatta (rhesus monkey) ENSMUSP00000028081 Mus musculus (house mouse) XP_001602380.1 Nasonia vitripennis (wasp) ENSOANP00000009075 Ornithorynchus anatinus (platypus) ENSORLP00000013518 Oryzias latipes (japanese killifish) PHUM007143-PA Pediculus humanus (human body louse) PP07283 Pristionchus pacificus (nematode) ENSPPYP00000002483 Pongo pygmaeus (orangutan) ENSPTRP00000003972 Pan troglodytes (chimpanzee) ENSRNOP00000000155 Rattus norvegicus (norway rat) XP_001183076.1 Strongylocentrotus purpuratus (purple sea urchin) XP_967978.1 Tribolium castaneum (red flour beetle) ENSTNIP00000008570 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000022204 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000036203 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB16322 NV17100 LH12194 ISCW007901 FBgn0232977 FBgn0212278 FBgn0201998 FBgn0187680 FBgn0166264 JGI_V11_306515 FBgn0075330 FBgn0164369 FBgn0138145 FBgn0120199 FBgn0111135 FBgn0096570 CPIJ004476 BGIBMGA002024 ACYPI009801 GB10363 AGAP004689 AAEL011063 PHUM154740 GLEAN_13878
Stocks & Reagents
Stocks Listed in FlyBase ( 15 )
Bloomington	10105 w1118 P{EP}l(1)G0289EP379 12562 w1118 P{GT1}l(1)G0289BG00227 11966 w67c23 P{lacW}l(1)G0289G0289/FM7c 33690 y1 sc* v1; P{TRiP.HMS00558}attP2
Harvard	- P{XP}l(1)G0289d01761
Kyoto	125128 w1118 P{RS5}l(1)G02895-HA-1186
VDRC	v107283 P{KK102740}VIE-260B v1054 w1118; P{GD6}v1054/TM3 v39505 w1118; P{GD2502}v39505 v39506 w1118; P{GD2502}v39506 v46376 w1118; P{GD2502}v46376 v27247 w1118; P{GD14489}v27247
	More stocks available...
Genomic Clones ( 1 )
	BACR29G02 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 230 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD40707
Other clones	DPiM_LD40707 MIP09046
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT03662 AT14092 AT15833 AT24208 AT30719 GH01764 GH02748 GH13674 GH26289 GM02506 GM04045 GM04693 GM06120 GM07903 GM08787 GM09458 GM10748 LD02876 LD05104 LD05219 LD06277 LD08469 LD09201 LD09682 LD10571 LD12036 LD12058 LD12476 LD14586 LD16195 LD16527 LD16975 LD18533 LD18983 LD19883 LD21818 LD22165 LD22386 LD24123 LD24158 LD24802 LD26776 LD27607 LD28157 LD28844 LD33771 LD35386 LD35740 LD38184 LD38445 LD38972 LD39467 LD42850 LD45027 LD45440 LD46136 LD46331 LD46396 LD47061 LD47403 LD48016 LP07864 LP10522 LP11746 LP12862 RE08632 RE09093 RE09357 RE14048 RE20612 RE22347 RE23015 RE36176 RE38330 RE41247 RE44639 RE52232 RE52370 RE55314 RE56042 RE57231 RE68930 RE69623 RE69744 RE74554 RE74879 RH02769 RH04432 RH04546 RH04610 RH05414 RH06225 RH14774 RH14831 RH21716 RH23384 RH26291 RH26591 RH27153 RH27467 RH33839 RH33905 RH35486 RH37774 RH38362 RH39856 RH43065 RH56156 RH58736 RH71020 RH72148 RH73731 SD02587 SD03615 SD13728 SD20329 SD23475 SD24155 SD26956 SD27329
Other clones	55739 81936 102438 103492 106048 295459 299693 CK01.55C.E4 CK01.123B.E6 Dmel_dig_008956_0703_2998 Dmel_dig_010234_0600_1067 Dmel_neb_010392_0914_2986 Dmel_neb_012157_0887_0585 EC28302 EC255075 EK044850 EK093851 EK184124 EK225536 EK231056 EK244044 EN07805 EN16212 EP18857 FGC017C10 FGH129D09 FGM213E12 FGM226H10 GH01168 GH23857 HL01853 HL03621 HL07401 LD04850 LD05268 LD07403 LD08637 LD11143 LD12374 LD20944 LD23293 LD30570 LD36709 LD42220 LD42373 LD43773 LD44490 LP07601 LP20247 RE16107 RE30234 RE32084 RE33319 RE46760 RE51945 RE55128 RE66938 RH03181 RH04795 RH06936 RH07864 RH08445 RH08451 RH08627 RH14675 RH16988 RH17088 RH18419 RH21050 RH21087 RH22574 RH23895 RH25511 RH25827 RH27679 RH28952 RH29542 RH33706 RH35215 RH35722 RH38014 RH38935 RH39907 RH42048 RH47586 RH50528 RH52536 RH53128 RH54503 RH57733 RH57877 RH58655 RH58872 RH61032 RH64638 RH65502 RH66472 RH68841 RH69194 RH70457 RH70469 RH70562 RH71008 RH71017 RH71136 RH71494 UUGC0977
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0028331 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31964
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: l(1)G0289 CG2221 (Peter et al., 2002)
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132393 RefSeq (Proteins) • NP_572621 DDBJ / EMBL / GenBank • AAF46578 AAL39786 AI520521 AJ426822 AQ025327 AW943527 AY069641 BH011358 CL632199 CZ472431 Entrez Gene - A searchable database of RefSeq genes. • 31964 UniProtKB/TrEMBL • Q9W2V9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Plexin (IPR002165) Plexin/semaphorin/integrin (IPR003659)
Linkouts
	BioGRID - A database of protein and genetic interactions • 58396 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0028331 DroID - A comprehensive database of gene and protein interactions. • FBgn0028331 DRSC - Results from RNAi screens. • FBgn0028331 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0028331 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG2221-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0028331 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31964 InParanoid A subset of ortholog calls from InParanoid. • AAEL011063-PA Aedes aegypti (mosquito) AGAP004689-PA Anopheles gambiae (mosquito) XP_001945865.1 Acyrthosiphon pisum (pea aphid) 106324 Branchiostoma floridae (lancelet) 83501 Branchiostoma floridae (lancelet) XP_001894877.1 Brugia malayi (roundworm nematode) BGIBMGA002024-PA Bombyx mori (silk worm) ENSBTAP00000012472 Bos taurus (bovine) CN22175 Caenorhabditis brenneri (small nematode) CBP27000 Caenorhabditis briggsae (nematode) CE30889 Caenorhabditis elegans (worm) ENSCAFP00000006098 Canis familiaris (dog) JA02137 Caenorhabditis japonica (nematode) CPIJ004476 Culex pipens (mosquito) ENSCPOP00000006578 Cavia porcellus (guinea pig) RP11208 Caenorhabditis remanei (nematode) 229007 Capitella spl (polychaete worm) 306515 Daphnia pulex (daphnia) ENSDARP00000078356 Danio rerio (zebra fish) ENSECAP00000015262 Equus caballus (horse) ENSGACP00000005267 Gymnopilus aculeatus (mushroom) ENSGALP00000012907 Gallus gallus (chicken) 109381 Hypsipyla robusta (cedar shoot borer) ENSP00000366460 Homo sapiens (human) ISCW007901-PA Ixodes scapularis (deer tick) 29073 Monocosta brevicollis (choanoflagellate) ENSMODP00000011529 Monodelphis domestica (gray opossum) ENSMMUP00000020153 Macaca mulatta (rhesus monkey) ENSMUSP00000028081 Mus musculus (house mouse) XP_001602380.1 Nasonia vitripennis (wasp) ENSOANP00000009075 Ornithorynchus anatinus (platypus) ENSORLP00000013518 Oryzias latipes (japanese killifish) PHUM007143-PA Pediculus humanus (human body louse) PP07283 Pristionchus pacificus (nematode) ENSPPYP00000002483 Pongo pygmaeus (orangutan) ENSPTRP00000003972 Pan troglodytes (chimpanzee) ENSRNOP00000000155 Rattus norvegicus (norway rat) XP_001183076.1 Strongylocentrotus purpuratus (purple sea urchin) XP_967978.1 Tribolium castaneum (red flour beetle) ENSTNIP00000008570 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000022204 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000036203 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31964 modMine - Data generated by the modENCODE project. • FBgn0028331 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB16322 NV17100 LH12194 ISCW007901 FBgn0232977 FBgn0212278 FBgn0201998 FBgn0187680 FBgn0166264 JGI_V11_306515 FBgn0075330 FBgn0164369 FBgn0138145 FBgn0120199 FBgn0111135 FBgn0096570 CPIJ004476 BGIBMGA002024 ACYPI009801 GB10363 AGAP004689 AAEL011063 PHUM154740 GLEAN_13878
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	CG2221 (Lecuyer et al., 2007, Gruber and Long, 2009, Keleman et al., 2009.8.5, Ni et al., 2010.12.1) l(1)G0289 (Popodi et al., 2010-)
Name Synonym	lethal (1) G0289
Secondary FlyBase IDs
	FBgn0030194
References ( 19 )
Research paper	Baycin-Hizal et al., 2011, J. Proteome Res. 10(6): 2777--2784 GlycoFly: A Database of Drosophila N-linked Glycoproteins Identified Using SPEG-MS Techniques. [FBrf0213834] Gruber and Long, 2009, Genetics 181(2): 661--670 Cis-regulatory Variation Is Typically Polyallelic in Drosophila. [FBrf0207347] Lecuyer et al., 2007, Cell 131(1): 174--187 Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function. [FBrf0200939]
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