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Gene Dmel\l(1)G0222

General Information
Symbol	Dmel\l(1)G0222	Species	D. melanogaster
Name	lethal (1) G0222	Annotation symbol	CG8465
Feature type	protein_coding_gene	FlyBase ID	FBgn0028343
Gene Model Status	Current	Stock availability	9 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	16B5-16B6	Sequence location	X:17,465,887..17,473,262 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene lethal (1) G0222 is referred to in FlyBase by the symbol Dmel\l(1)G0222 (CG8465, FBgn0028343). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: cell morphogenesis; neurogenesis. 11 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: Ankyrin repeat; Ankyrin repeat-containing domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval salivary gland. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, adult hindgut, larval fat body, adult salivary gland, larval trachea, adult ovary, adult male accessory gland, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1636237_s_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of l(1)G0222. Gene sequence location is X:17465887..17473262.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03	Transcripts l(1)G0222-RG Polypeptides l(1)G0222-PG
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 16B5-16B6   Limits computationally determined from genome sequence between P{EP}bazEP1446 and P{EP}EP1464
Experimentally Determined Cytological Location
Cytogenetic map Notes References 16B6-16B11   (determined by in situ hybridisation) 16B1--4 (determined by in situ hybridisation)   (Peter et al., 2002) 16B6-16B11   (determined by in situ hybridisation) 16B1--4 (determined by in situ hybridisation)   (Schaefer et al., 1999.8.12)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\l(1)G0222 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.51 Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) l(1)G0222-RD FBtr0301413  NM_132993   3870   1174 l(1)G0222-RE FBtr0301414  NM_167569   3876   1174 l(1)G0222-RF FBtr0301415  NM_167570   3569   1110 l(1)G0222-RG FBtr0340625     3855   1169
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein l(1)G0222-PD   FBpp0290627   129.1   1174   8.09     NP_573221   AAF48735 l(1)G0222-PE   FBpp0290628   129.1   1174   8.09     NP_728082   AAF48736 l(1)G0222-PF   FBpp0290629   123.0   1110   8.35     NP_728083   AAF48737 l(1)G0222-PG   FBpp0309489   128.5   1169   8.01
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ankyrin repeat (IPR002110) Ankyrin repeat-containing domain (IPR020683)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA142077   AA142078   AA264153   AA392265   AA438521   AA539673   AA697598   AA697918   AA820917   AE014298 AAF48735   AE014298 AAF48736   AE014298 AAF48737   AI135350   AI238524   AI258943   AI455548   AI513406   AI514584   AI516083   AI531206   AI532712   AI533265   AJ426971   AJ426972   AW944220   AX777321   AX777323   AX777325   AY122241 AAM52753   BF499299   BG632737   BG637985   BG638525   BI168074   BI168584   BI233183   BI235133   BI241559   BI352927   BI636978   BQ103202   CO190126   CO268841   CO273291   CO276764   CO304488   CO304654   CO313934   CO320285   CO342925   CO344294   CZ481393   CZ484853   EC083069   EC214109   EC225758   EC227239   EC232452   EC237689   EC243021   EC250512   EC253882   EC254891   EL873802   EL873803   EV592488
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8MQX9 Q9VX44
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism | intense & ubiquitous   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   central brain primordium   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic brain   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
cytoplasm inferred from direct assay (D'Ambrosio and Vale, 2010) endoplasmic reticulum inferred from direct assay (D'Ambrosio and Vale, 2010)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval salivary gland. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, adult hindgut, larval fat body, adult salivary gland, larval trachea, adult ovary, adult male accessory gland, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    246.825 Larval Midgut    34.5 Larval Hindgut    62.7 Larval Malpighian Tubules    90.6 Larval Fat Body    197 Larval Salivary Gland    1420.5 Larval Trachea    112.475 Larval Carcass    103.625 Adult Head    71 Adult Eye    85.2 Adult Brain    119.9 Adult Thoracic-Abdominal Ganglion    86.4 Adult Crop    107.5 Adult Midgut    43 Adult Hindgut    273.2 Adult Malpighian Tubules    47 Adult Fat Body    50.6 Adult Salivary Gland    136.3 Adult Heart    58.125 Adult VirginFemale Spermatheca    44.9 Adult InseminatedFemale Spermatheca    29.6 Adult Ovary    442.2 Adult Testis    48.6 Adult Male Accessory Gland    276.4 Adult Carcass    81.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    246.825 Larval Midgut    34.5 Larval Hindgut    62.7 Larval Malpighian Tubules    90.6 Larval Fat Body    197 Larval Salivary Gland  (1420.5) Larval Trachea    112.475 Larval Carcass    103.625 Adult Head    71 Adult Eye    85.2 Adult Brain    119.9 Adult Thoracic-Abdominal Ganglion    86.4 Adult Crop    107.5 Adult Midgut    43 Adult Hindgut    273.2 Adult Malpighian Tubules    47 Adult Fat Body    50.6 Adult Salivary Gland    136.3 Adult Heart    58.125 Adult VirginFemale Spermatheca    44.9 Adult InseminatedFemale Spermatheca    29.6 Adult Ovary    442.2 Adult Testis    48.6 Adult Male Accessory Gland    276.4 Adult Carcass    81.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    246.825 Larval Midgut    34.5 Larval Hindgut    62.7 Larval Malpighian Tubules    90.6 Larval Fat Body    197 Larval Salivary Gland  (1420.5) Larval Trachea    112.475 Larval Carcass    103.625 Adult Head    71 Adult Eye    85.2 Adult Brain    119.9 Adult Thoracic-Abdominal Ganglion    86.4 Adult Crop    107.5 Adult Midgut    43 Adult Hindgut    273.2 Adult Malpighian Tubules    47 Adult Fat Body    50.6 Adult Salivary Gland    136.3 Adult Heart    58.125 Adult VirginFemale Spermatheca    44.9 Adult InseminatedFemale Spermatheca    29.6 Adult Ovary    442.2 Adult Testis    48.6 Adult Male Accessory Gland    276.4 Adult Carcass    81.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    246.825 Larval Midgut    34.5 Larval Hindgut    62.7 Larval Malpighian Tubules    90.6 Larval Fat Body    197 Larval Salivary Gland    1420.5 Larval Trachea    112.475 Larval Carcass    103.625 Adult Head    71 Adult Eye    85.2 Adult Brain    119.9 Adult Thoracic-Abdominal Ganglion    86.4 Adult Crop    107.5 Adult Midgut    43 Adult Hindgut    273.2 Adult Malpighian Tubules    47 Adult Fat Body    50.6 Adult Salivary Gland    136.3 Adult Heart    58.125 Adult VirginFemale Spermatheca    44.9 Adult InseminatedFemale Spermatheca    29.6 Adult Ovary    442.2 Adult Testis    48.6 Adult Male Accessory Gland    276.4 Adult Carcass    81.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    246.825 Larval Midgut    34.5 Larval Hindgut    62.7 Larval Malpighian Tubules    90.6 Larval Fat Body    197 Larval Salivary Gland    1420.5 Larval Trachea    112.475 Larval Carcass    103.625 Adult Head    71 Adult Eye    85.2 Adult Brain    119.9 Adult Thoracic-Abdominal Ganglion    86.4 Adult Crop    107.5 Adult Midgut    43 Adult Hindgut    273.2 Adult Malpighian Tubules    47 Adult Fat Body    50.6 Adult Salivary Gland    136.3 Adult Heart    58.125 Adult VirginFemale Spermatheca    44.9 Adult InseminatedFemale Spermatheca    29.6 Adult Ovary    442.2 Adult Testis    48.6 Adult Male Accessory Gland    276.4 Adult Carcass    81.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    246.825 Larval Midgut    34.5 Larval Hindgut    62.7 Larval Malpighian Tubules    90.6 Larval Fat Body    197 Larval Salivary Gland  (1420.5) Larval Trachea    112.475 Larval Carcass    103.625 Adult Head    71 Adult Eye    85.2 Adult Brain    119.9 Adult Thoracic-Abdominal Ganglion    86.4 Adult Crop    107.5 Adult Midgut    43 Adult Hindgut    273.2 Adult Malpighian Tubules    47 Adult Fat Body    50.6 Adult Salivary Gland    136.3 Adult Heart    58.125 Adult VirginFemale Spermatheca    44.9 Adult InseminatedFemale Spermatheca    29.6 Adult Ovary    442.2 Adult Testis    48.6 Adult Male Accessory Gland    276.4 Adult Carcass    81.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    246.825 Larval Midgut    34.5 Larval Hindgut    62.7 Larval Malpighian Tubules    90.6 Larval Fat Body    197 Larval Salivary Gland  1420.5 Larval Trachea    112.475 Larval Carcass    103.625 Adult Head    71 Adult Eye    85.2 Adult Brain    119.9 Adult Thoracic-Abdominal Ganglion    86.4 Adult Crop    107.5 Adult Midgut    43 Adult Hindgut    273.2 Adult Malpighian Tubules    47 Adult Fat Body    50.6 Adult Salivary Gland    136.3 Adult Heart    58.125 Adult VirginFemale Spermatheca    44.9 Adult InseminatedFemale Spermatheca    29.6 Adult Ovary    442.2 Adult Testis    48.6 Adult Male Accessory Gland    276.4 Adult Carcass    81.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    246.825 Larval Midgut    34.5 Larval Hindgut    62.7 Larval Malpighian Tubules    90.6 Larval Fat Body    197 Larval Salivary Gland    1420.5 Larval Trachea    112.475 Larval Carcass    103.625 Adult Head    71 Adult Eye    85.2 Adult Brain    119.9 Adult Thoracic-Abdominal Ganglion    86.4 Adult Crop    107.5 Adult Midgut    43 Adult Hindgut    273.2 Adult Malpighian Tubules    47 Adult Fat Body    50.6 Adult Salivary Gland    136.3 Adult Heart    58.125 Adult VirginFemale Spermatheca    44.9 Adult InseminatedFemale Spermatheca    29.6 Adult Ovary    442.2 Adult Testis    48.6 Adult Male Accessory Gland    276.4 Adult Carcass    81.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    71   NA  Eye    85.2   NA  Brain    119.9   246.825  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    86.4   NA  Crop    107.5   no informative data  Midgut    43   62.7  Hindgut    273.2   90.6  Malpighian Tubules    47   197  Fat Body    50.6   1420.5  Salivary Gland    136.3   NA  Heart    58.125   112.475  Trachea    NA   NA  VirginFemale Spermatheca    44.9   NA  InseminatedFemale Spermatheca    29.6   NA  Ovary    442.2   NA  Testis    48.6   NA  Male Accessory Gland    276.4   103.625  Carcass    81.5 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    15 central nervous system, pupae P8    7 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    5 head, mated 20-day male    7 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    3 fat body, white prepupae    5 fat body, pupae P8    3 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    5 ovary, virgin 4-day female    49 ovary, mated 4-day female    33 testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    15 central nervous system, pupae P8    7 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    5 head, mated 20-day male    7 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    3 fat body, white prepupae    5 fat body, pupae P8    3 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    5 ovary, virgin 4-day female  (49) ovary, mated 4-day female  (33) testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    15 central nervous system, pupae P8    7 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    5 head, mated 20-day male    7 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    3 fat body, white prepupae    5 fat body, pupae P8    3 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    5 ovary, virgin 4-day female    49 ovary, mated 4-day female    33 testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    15 central nervous system, pupae P8    7 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    5 head, mated 20-day male    7 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    3 fat body, white prepupae    5 fat body, pupae P8    3 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    5 ovary, virgin 4-day female    49 ovary, mated 4-day female    33 testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    15 central nervous system, pupae P8    7 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    5 head, mated 20-day male    7 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    3 fat body, white prepupae    5 fat body, pupae P8    3 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    5 ovary, virgin 4-day female    49 ovary, mated 4-day female    33 testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    15 central nervous system, pupae P8    7 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    5 head, mated 20-day male    7 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    3 fat body, white prepupae    5 fat body, pupae P8    3 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    5 ovary, virgin 4-day female  (49) ovary, mated 4-day female  (33) testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    15 central nervous system, pupae P8    7 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    5 head, mated 20-day male    7 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    3 fat body, white prepupae    5 fat body, pupae P8    3 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    5 ovary, virgin 4-day female    49 ovary, mated 4-day female    33 testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    14 central nervous system, larvae L3    15 central nervous system, pupae P8    7 head, virgin 1-day female    2 head, virgin 4-day female    3 head, virgin 20-day female    6 head, mated 1-day female    4 head, mated 4-day female    3 head, mated 20-day female    4 head, mated 1-day male    5 head, mated 4-day male    5 head, mated 20-day male    7 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    4 digestive system, 20-day adult    4 fat body, larvae L3 wandering    3 fat body, white prepupae    5 fat body, pupae P8    3 carcass, larvae L3 wandering    13 carcass, 1-day adult    4 carcass, 4-day adult    4 carcass, 20-day adult    5 ovary, virgin 4-day female    49 ovary, mated 4-day female    33 testis, mated 4-day male    6 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    117 embryo 02-04hr    72 embryo 04-06hr    67 embryo 06-08hr    56 embryo 08-10hr    46 embryo 10-12hr    35 embryo 12-14hr    21 embryo 14-16hr    18 embryo 16-18hr    13 embryo 18-20hr    13 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    11 larva L2    8 larva L3 12hr old    8 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    27 larva L3 puffstage 7-9    26 white prepupae new    19 white prepupae 12hr    25 white prepupae 24hr    27 pupae 2d postWPP    19 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    13 adult male 30day    14 adult female 01day    31 adult female 05day    56 adult female 30day    59 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (117) embryo 02-04hr  (72) embryo 04-06hr  (67) embryo 06-08hr  (56) embryo 08-10hr  (46) embryo 10-12hr  (35) embryo 12-14hr    21 embryo 14-16hr    18 embryo 16-18hr    13 embryo 18-20hr    13 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    11 larva L2    8 larva L3 12hr old    8 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6  (27) larva L3 puffstage 7-9  26 white prepupae new    19 white prepupae 12hr    25 white prepupae 24hr  (27) pupae 2d postWPP    19 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    13 adult male 30day    14 adult female 01day  (31) adult female 05day  (56) adult female 30day  (59) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (117) embryo 02-04hr    72 embryo 04-06hr    67 embryo 06-08hr    56 embryo 08-10hr    46 embryo 10-12hr    35 embryo 12-14hr    21 embryo 14-16hr    18 embryo 16-18hr    13 embryo 18-20hr    13 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    11 larva L2    8 larva L3 12hr old    8 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    27 larva L3 puffstage 7-9    26 white prepupae new    19 white prepupae 12hr    25 white prepupae 24hr    27 pupae 2d postWPP    19 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    13 adult male 30day    14 adult female 01day    31 adult female 05day    56 adult female 30day    59 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    117 embryo 02-04hr    72 embryo 04-06hr    67 embryo 06-08hr    56 embryo 08-10hr    46 embryo 10-12hr    35 embryo 12-14hr    21 embryo 14-16hr    18 embryo 16-18hr    13 embryo 18-20hr    13 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    11 larva L2    8 larva L3 12hr old    8 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    27 larva L3 puffstage 7-9    26 white prepupae new    19 white prepupae 12hr    25 white prepupae 24hr    27 pupae 2d postWPP    19 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    13 adult male 30day    14 adult female 01day    31 adult female 05day    56 adult female 30day    59 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    117 embryo 02-04hr    72 embryo 04-06hr    67 embryo 06-08hr    56 embryo 08-10hr    46 embryo 10-12hr    35 embryo 12-14hr    21 embryo 14-16hr    18 embryo 16-18hr    13 embryo 18-20hr    13 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    11 larva L2    8 larva L3 12hr old    8 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    27 larva L3 puffstage 7-9    26 white prepupae new    19 white prepupae 12hr    25 white prepupae 24hr    27 pupae 2d postWPP    19 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    13 adult male 30day    14 adult female 01day    31 adult female 05day    56 adult female 30day    59 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (117) embryo 02-04hr  (72) embryo 04-06hr  (67) embryo 06-08hr  (56) embryo 08-10hr  (46) embryo 10-12hr  (35) embryo 12-14hr    21 embryo 14-16hr    18 embryo 16-18hr    13 embryo 18-20hr    13 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    11 larva L2    8 larva L3 12hr old    8 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6  27 larva L3 puffstage 7-9  26 white prepupae new    19 white prepupae 12hr    25 white prepupae 24hr  27 pupae 2d postWPP    19 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    13 adult male 30day    14 adult female 01day  31 adult female 05day  (56) adult female 30day  (59) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  117 embryo 02-04hr    72 embryo 04-06hr    67 embryo 06-08hr    56 embryo 08-10hr    46 embryo 10-12hr    35 embryo 12-14hr    21 embryo 14-16hr    18 embryo 16-18hr    13 embryo 18-20hr    13 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    11 larva L2    8 larva L3 12hr old    8 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    27 larva L3 puffstage 7-9    26 white prepupae new    19 white prepupae 12hr    25 white prepupae 24hr    27 pupae 2d postWPP    19 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    13 adult male 30day    14 adult female 01day    31 adult female 05day    56 adult female 30day    59 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    117 embryo 02-04hr    72 embryo 04-06hr    67 embryo 06-08hr    56 embryo 08-10hr    46 embryo 10-12hr    35 embryo 12-14hr    21 embryo 14-16hr    18 embryo 16-18hr    13 embryo 18-20hr    13 embryo 20-22hr    15 embryo 22-24hr    15 larva L1    11 larva L2    8 larva L3 12hr old    8 larva L3 puffstage 1-2    15 larva L3 puffstage 3-6    27 larva L3 puffstage 7-9    26 white prepupae new    19 white prepupae 12hr    25 white prepupae 24hr    27 pupae 2d postWPP    19 pupae 3d postWPP    9 pupae 4d postWPP    9 adult male 01day    11 adult male 05day    13 adult male 30day    14 adult female 01day    31 adult female 05day    56 adult female 30day    59 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    24 embryonic 1182-4H    36 embryonic GM2    34 embryonic Kc167    25 embryonic S1    37 embryonic S3    10 leg disc CME L1    21 wing disc CME-W2    18 wing disc ML-DmD8    19 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    13 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11    28 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    25 tumorous blood cells mbn2    14 ovary fGS/OSS    11 ovary OSC    14 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    24 embryonic 1182-4H  (36) embryonic GM2  (34) embryonic Kc167    25 embryonic S1  (37) embryonic S3    10 leg disc CME L1    21 wing disc CME-W2    18 wing disc ML-DmD8    19 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    13 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11  (28) antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    25 tumorous blood cells mbn2    14 ovary fGS/OSS    11 ovary OSC    14 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    24 embryonic 1182-4H    36 embryonic GM2    34 embryonic Kc167    25 embryonic S1    37 embryonic S3    10 leg disc CME L1    21 wing disc CME-W2    18 wing disc ML-DmD8    19 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    13 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11    28 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    25 tumorous blood cells mbn2    14 ovary fGS/OSS    11 ovary OSC    14 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    24 embryonic 1182-4H    36 embryonic GM2    34 embryonic Kc167    25 embryonic S1    37 embryonic S3    10 leg disc CME L1    21 wing disc CME-W2    18 wing disc ML-DmD8    19 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    13 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11    28 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    25 tumorous blood cells mbn2    14 ovary fGS/OSS    11 ovary OSC    14 ovary OSS    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    24 embryonic 1182-4H    36 embryonic GM2    34 embryonic Kc167    25 embryonic S1    37 embryonic S3    10 leg disc CME L1    21 wing disc CME-W2    18 wing disc ML-DmD8    19 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    13 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11    28 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    25 tumorous blood cells mbn2    14 ovary fGS/OSS    11 ovary OSC    14 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    24 embryonic 1182-4H  (36) embryonic GM2  (34) embryonic Kc167    25 embryonic S1  (37) embryonic S3    10 leg disc CME L1    21 wing disc CME-W2    18 wing disc ML-DmD8    19 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    13 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11  28 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    25 tumorous blood cells mbn2    14 ovary fGS/OSS    11 ovary OSC    14 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    24 embryonic 1182-4H    36 embryonic GM2    34 embryonic Kc167    25 embryonic S1    37 embryonic S3    10 leg disc CME L1    21 wing disc CME-W2    18 wing disc ML-DmD8    19 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    13 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11    28 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    25 tumorous blood cells mbn2    14 ovary fGS/OSS    11 ovary OSC    14 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    24 embryonic 1182-4H    36 embryonic GM2    34 embryonic Kc167    25 embryonic S1    37 embryonic S3    10 leg disc CME L1    21 wing disc CME-W2    18 wing disc ML-DmD8    19 wing disc ML-DmD9    24 wing disc ML-DmD16-c3    17 wing disc ML-DmD21    13 wing disc ML-DmD32    22 haltere disc ML-DmD17-c3    24 eye-antennal disc ML-DmD11    28 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    16 CNS ML-DmBG2-c2    25 tumorous blood cells mbn2    14 ovary fGS/OSS    11 ovary OSC    14 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    44 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    28 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3  (44) Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult  (28) Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    44 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    28 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    44 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    28 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    44 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    28 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3  (44) Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult  28 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    44 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    28 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    7 cold shock, 4-day adult    5 heat shock, 4-day adult    15 Cadmium 50 mM 6 hrs, larvae L3    7 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    13 Cadmium 100 mM 48 hrs, 4-day adult    25 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    9 Zinc 5 mM 12 hrs, larvae L3    2 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    44 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    6 Caffeine 1.5 mg/ml 4 hrs, larvae L3    6 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    28 Rotenone 2 μg 12 hrs, larvae L3    5 Rotenone 8 μg 12 hrs, larvae L3    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_06 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • SD02148 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0028343 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8465-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal l(1)G0222GD13933 lethal | larval stage l(1)G0222G0222 l(1)G0222G0316 lethal | prepupal stage l(1)G0222G0316 lethal | pupal stage l(1)G0222G0316 lethal | recessive l(1)G0222G0222 l(1)G0222G0316 l(1)G0222PG51 viable l(1)G0222d11117 l(1)G0222e03639 viable, with Scer\GAL4pnr-MD237 l(1)G0222GD13933 Sterility Allele fertile l(1)G0222d11117 l(1)G0222e03639 Other Phenotypes Allele neuroanatomy defective | larval stage l(1)G0222GD13933 visible, with Scer\GAL4pnr-MD237 l(1)G0222GD13933 Phenotype manifest in Allele embryonic/larval neuroblast | larval stage l(1)G0222GD13933 ganglion mother cell | larval stage l(1)G0222GD13933 mesothoracic tergum, with Scer\GAL4pnr-MD237 l(1)G0222GD13933
Classical Alleles ( 8 )
For All Classical Alleles Show
Allele of l(1)G0222 Class Mutagen Stocks Known lesion l(1)G0222d11117 P-element activity 2 -- l(1)G0222e03639 piggyBac transposase 2 -- l(1)G0222f02349 piggyBac transposase 1 -- l(1)G0222G0316 P-element activity 1 -- l(1)G0222GG01014 P-element activity 1 -- l(1)G0222CPTI000326 piggyBac transposase 0 Yes l(1)G0222G0222 P-element activity 0 -- l(1)G0222PG51 Delta2-3 0 Yes
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of l(1)G0222 Class Mutagen Stocks Known lesion l(1)G0222GD13933 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes l(1)G0222KK106212 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes l(1)G0222NIG.8465R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Duplicated in	Dp(1;3)DC331 (Popodi et al., 2010-, Venken et al., 2010)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD13933} NA P{KK106212} NA P{NIG.8465R} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{Mae-UAS.6.11}l(1)G0222GG01014 NA P{XP}l(1)G0222d11117 NA miscellaneous insertions PBac{602.P.SVS-1}l(1)G0222CPTI000326 NA PBac{RB}l(1)G0222e03639 NA PBac{WH}l(1)G0222f02349 NA insertion of enhancer trap P{lacW}l(1)G0222G0222 No P{lacW}l(1)G0222G0316 No insertion of enhancer trap binary system P{GawB}l(1)G0222PG51 No
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 4 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
cell morphogenesis inferred from mutant phenotype (D'Ambrosio and Vale, 2010) neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component
CV term Evidence References
cytoplasm inferred from direct assay (D'Ambrosio and Vale, 2010) endoplasmic reticulum inferred from direct assay (D'Ambrosio and Vale, 2010)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
l(1)G0222 - Vap-33-1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions l(1)G0222 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0028343 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32732
Orthologs
OrthoDB Orthologs (41) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG60CJ2B Dipteran inclusive ortholog search EOG69600V Insect inclusive ortholog search EOG6FBGP4 Arthropod inclusive ortholog search EOG6JM64V Metazoa inclusive ortholog search EOG63NM5K
Orthologs in Drosophila Species (EOG60CJ2B)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\l(1)G0222     Drosophila sechellia   Dsec\GM13308 Y   Drosophila erecta   Dere\GG18176 Y   Drosophila yakuba   Dyak\GE15586 Y   Drosophila ananassae   Dana\GF22608 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA21098 Y   Drosophila persimilis   Dper\GL16413 Y   Drosophila willistoni   Dwil\GK10157 Y   Drosophila virilis   Dvir\GJ19286 Y   Drosophila mojavensis   Dmoj\GI14635 Y   Drosophila grimshawi   Dgri\GH12005 Y
Orthologs in non-Drosophila Dipterans (EOG69600V)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL014011   Aedes aegypti Yellow fever mosquito  Aaeg\AAEL012290   Aedes aegypti Yellow fever mosquito  Aaeg\AAEL014008   Anopheles gambiae Malaria mosquito  Agam\AGAP011534   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ017579
Orthologs in non-Dipteran Insects (EOG6FBGP4)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB41488   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG010817   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH14699   Atta cephalotes Leafcutter ant  Acep\ACEP24116   Camponotus floridanus Florida carpenter ant  Cflo\CFLO13921   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL18842   Linepithema humile Argentine ant  Lhum\LH16245   Pogonomyrmex barbatus Red harvester ant  Pbar\PB15481   Pogonomyrmex barbatus Red harvester ant  Pbar\PB15482   Solenopsis invicta Red fire ant  Sinv\SINV25782   Solenopsis invicta Red fire ant  Sinv\SINV25777   Acyrthosiphon pisum Pea aphid  Apim\ACYPI004086   Bombyx mori Silkmoth  Bmor\BGIBMGA009396   Pediculus humanus Human body louse  Phum\PHUM122510   Tribolium castaneum Red flour beetle  Tcas\GLEAN_07850
Orthologs in non-Insect Arthropods (EOG6JM64V)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\matR
Orthologs in non-Arthropod Metazoa (EOG63NM5K)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\Y55F3BR.8   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_020434gn   Danio rerio Zebrafish  Drer\zdhhc8a   Danio rerio Zebrafish  Drer\ankle2   Xenopus tropicalis Western clawed frog  Xtro\ankle2   Gallus gallus Domestic chicken  Ggal\ANKLE2   Mus musculus House mouse  Mmus\Ankle2   Rattus norvegicus Norway rat  Rnor\Ankle2   Homo sapiens Human  Hsap\ANKLE2
Human Orthologs (1)
Gene OMIM HGNC Hsap\ANKLE2
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila sechellia Dsec\GM13308 Drosophila erecta Dere\GG18176 Drosophila yakuba Dyak\GE15586 Drosophila ananassae Dana\GF22608 Drosophila pseudoobscura pseudoobscura Dpse\GA21098 Drosophila persimilis Dper\GL16413 Drosophila willistoni Dwil\GK10157 Drosophila virilis Dvir\GJ19286 Drosophila mojavensis Dmoj\GI14635 Drosophila grimshawi Dgri\GH12005
Stocks & Reagents
Stocks Listed in FlyBase ( 9 )
Bloomington	19343 w1118 P{XP}l(1)G0222d11117 18178 w1118 PBac{RB}l(1)G0222e03639 11969 w67c23 P{lacW}l(1)G0222G0316/FM7c 22138 y1 w67c23 P{Mae-UAS.6.11}l(1)G0222GG01014/FM7c
Harvard	- P{XP}l(1)G0222d11117 - PBac{RB}l(1)G0222e03639 - PBac{WH}l(1)G0222f02349
VDRC	v100655 P{KK106212}VIE-260B v24107 w1118; P{GD13933}v24107
Genomic Clones ( 2 )
	BACR10J22 BACR42I14 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 48 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	SD02148
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT13829 GH14580 GM21314 HL02846 HL03454 LD07771 LD12318 LD17956 LD28391 LD41835 LD45457 LD45996 LP02251 RE08616 RE09381 RE29472 RE30943 RE38658 SD04306 SD05025 SD18842
Other clones	581 10524 108364 122106 173023 178453 214435.35 214531.26 CK01.121C.E10 CK00353 Dmel_neb_000745_0648_1902 EK046706 EK092851 EK110362 EK122015 EK234328 EK244839 EK245431 EK283614 EP15744 EP19014 GH13043 IP13882 LD11281 LD24856 UUGC0602
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0028343 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32732
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: l(1)G0222 anon-WO03040301.175 anon-WO03040301.177 anon-WO03040301.179 (FlyBase, 1996-) Source for merge of: l(1)G0222 CG8465 l(1)G0316 (Peter et al., 2002)
Additional comments	Source for merge of l(1)G0222 anon-WO03040301.175 anon-WO03040301.177 anon-WO03040301.179 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132993 NM_167569 NM_167570 RefSeq (Proteins) • NP_573221 NP_728082 NP_728083 DDBJ / EMBL / GenBank • AAF48735 AAF48736 AAF48737 AAM52753 AI531206 AJ426971 AJ426972 AW944220 AX777321 AX777323 AX777325 AY122241 CZ481393 CZ484853 Entrez Gene - A searchable database of RefSeq genes. • 32732 UniProtKB/TrEMBL • Q8MQX9 Q9VX44
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ankyrin repeat (IPR002110) Ankyrin repeat-containing domain (IPR020683) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • SD02148
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0028343 DRSC - Results from RNAi screens. • FBgn0028343 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0028343 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG8465-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0028343 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 32732 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 32732 modMine - Data generated by the modENCODE project. • FBgn0028343
Synonyms & Secondary IDs ( 7 )
Reported As
Symbol Synonym	anon-WO03040301.175   anon-WO03040301.177   anon-WO03040301.179   CG8465 (Bourbon et al., 2002, Keleman et al., 2009.8.5, D'Ambrosio and Vale, 2010) l(1)G0222 (Popodi et al., 2010-, Japanese National Institute of Genetics, 2012.5.21, Venken et al., 2010) l(1)G0316 (Schaefer et al., 1999.8.12, )
Name Synonym	lethal (1) G0222
Secondary FlyBase IDs
	FBgn0028328 FBgn0030845 FBgn0066835 FBgn0066836 FBgn0066837
References ( 29 )
Generate a list of	All references relating to this gene ( 29 )
List References by type	Research paper  ( 5 ) Supplementary material  ( 5 ) Personal communication to FlyBase  ( 11 ) FlyBase analysis  ( 2 ) Stock list  ( 2 ) Website  ( 1 ) Curated genome annotation  ( 1 ) Patent  ( 1 ) DNA/RNA sequence record  ( 1 )
Recent research papers ( 1 )
	Krauchunas et al., 2012, Dev. Biol. 370(1): 125--134 Protein phosphorylation changes reveal new candidates in the regulation of egg activation and early embryogenesis in D. melanogaster. [FBrf0219342] Show all research papers ...