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Gene Dmel\CG15281

General Information
Symbol	Dmel\CG15281	Species	D. melanogaster
Name		Annotation symbol
Feature type	protein_coding_gene	FlyBase ID	FBgn0028536
Gene Model Status	Withdrawn	Stock availability	None publicly available
Also Known As	BG:DS00810.3
Genomic Location
Chromosome (arm)		Recombination map
Cytogenetic map	35B5-35B5	Sequence location
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG15281 (FBgn0028536).The gene previously had a gene model which is not supported by current evidence. It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. No alleles are reported. It has no annotated transcripts. Gene has not been localized to the genome sequence.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 35B5-35B5   Limits computationally determined from genome sequence between P{EP}elBEP2039&P{PZ}osprJ571 and P{lacW}Su(H)k07904
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt)
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence   Name AE003411 AAF44890   AI108667   AI135814   AI256889   AI259453   AY113616 AAM29621   BI565404
Mapped Features
Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
modENCODE Anatomy RNA-Seq
modENCODE Development RNA-Seq
modENCODE Cell Lines RNA-Seq
modENCODE Treatments RNA-Seq
Expression Clusters
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0028536 FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG15281 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG15281 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG15281 Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Disrupted in	Df(2L)Exel8033 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG15281 allele Gene References
External Data
Linkouts
Orthologs
OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search No orthologs identified Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (None identified)
No orthologies identified
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (5) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD23975 Drosophila sechellia Dsec\GM15743 Drosophila yakuba Dyak\GE19045 Drosophila ananassae Dana\GF14893 Drosophila willistoni Dwil\GK18300
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 0 )
cDNA Clones ( 0 )
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: BG:DS00810.3 CG15281 (FlyBase, 1996-) Source for merge of: BG:DS00810.3 CG18456 (Bayraktaroglu, 2000.4.8) Source for merge of: CG15281 BcDNA:RH63170 (FlyBase, 1996-)
Additional comments	Original annotation in this location (CG15281) utilized wrong ORF; current ORF (CG34166) supported by conservation across Drosophila species. (FlyBase Genome Annotators, 2007) Source for merge of CG15281 BcDNA:RH63170 was a shared cDNA (date:030728). (FlyBase, 1996-) Source for merge of BG:DS00810.3 CG15281 was sequence comparison (date:001104). (FlyBase, 1996-)
Other Comments
	Annotation (CG15281) eliminated in release 5.2 of the genome annotation. (FlyBase Genome Annotators, 2007)
External Crossreferences & Linkouts
Sequence Crossreferences
	DDBJ / EMBL / GenBank • AAF44890 AAM29621 AE003410 AE003411 AI108667 AI135814 AI256889 AI259453 AY113616 BI565404 UniProtKB/TrEMBL • Q8MYT4
Other Crossreferences
Linkouts
	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0028536
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	BcDNA:RH63170   BG:DS00810.3 (Ashburner et al., 1999.10.12, Ashburner et al., 1999, Ashburner et al., 1999, ) CG15281 (Lin et al., 2007, Brun et al., 2006) CG18456   DS00810.3 (Schmid and Aquadro, 2001)
Name Synonym
Secondary FlyBase IDs
	FBgn0032548 FBgn0042191 FBgn0062917
References ( 11 )
Research paper	Lin et al., 2007, Genome Res. 17(12): 1823--1836 Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes. [FBrf0202906] Brun et al., 2006, Genes Cells 11(4): 397--407 The MAPKKK Mekk1 regulates the expression of Turandot stress genes in response to septic injury in Drosophila. [FBrf0190571] Schmid and Aquadro, 2001, Genetics 159(2): 589--598 The evolutionary analysis of 'orphans' from the Drosophila genome identifies rapidly diverging and incorrectly annotated genes. [FBrf0139678] Ashburner et al., 1999, Genetics 153(1): 179--219 An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster. The Adh region. [FBrf0111326]
Supplementary material	Ashburner et al., 1999, Genetics 153(1): Table S2. Genes, known and predicted, that have been determined on the sequence of the Adh region. All genes are protein coding, unless indicated tscan in the prediction column, these are tRNAs. [FBrf0112151]
Personal communication to FlyBase	Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Bayraktaroglu, 2000.4.8, Annotation identities: Category 2. Annotation identities: Category 2. [FBrf0126709] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078] Ashburner et al., 1999.10.12, Adh. Adh. [FBrf0112153]
FlyBase analysis	FlyBase Genome Annotators, 2007, Changes affecting gene model number or type in release 5.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 5.2 of the annotated D.melanogaster genome. [FBrf0199252] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]