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Gene Dmel\Rpn7

General Information
Symbol	Dmel\Rpn7	Species	D. melanogaster
Name	Rpn7	Annotation symbol	CG5378
Feature type	protein_coding_gene	FlyBase ID	FBgn0028688
Gene Model Status	Current	Stock availability	4 publicly available
Also Known As	p42A
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	94A15-94A15	Sequence location	3R:18,286,384..18,287,772 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Rpn7 is referred to in FlyBase by the symbol Dmel\Rpn7 (CG5378, FBgn0028688). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: endopeptidase activity. There is experimental evidence that it is involved in the biological process: cellular process; proteolysis; neurogenesis. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: 26S proteasome, regulatory subunit Rpn7; Proteasome component (PCI) domain; Winged helix-turn-helix transcription repressor DNA-binding. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-06 hour embryonic stages, during late larval stages, at stages throughout the pupal period, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, larval midgut, larval hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval salivary gland, larval trachea, adult ovary, adult testis, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, adult midgut, adult hindgut, adult Malpighian tubules, adult salivary gland, adult spermathecae, adult male accessory gland, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1633594_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Rpn7. Gene sequence location is 3R:18286384..18287772.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10	References Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593
FB2012_01	Sequence features BKN29250 HFA16841
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 94A15-94A15   Limits computationally determined from genome sequence between P{PZ}l(3)rQ178rQ178 and P{lacW}Dph5L4910
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Rpn7 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.43
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Rpn7-RA FBtr0084294  NM_142791   1389   389
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Rpn7-PA   FBpp0083687   45.4   389   6.44     NP_651048   AAF56000
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Proteasome component (PCI) domain (IPR000717) 26S proteasome, regulatory subunit Rpn7 (IPR019585) Winged helix-turn-helix transcription repressor DNA-binding (IPR011991)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA940908   AE014297 AAF56000   AF145308 AAF08389   AI113847   AI257008   AI259499   AI296094   AI296428   AI296766   AI297343   AI387197   AI515356   AI944419   AW943886   AX260141   AX260144   AY052008 AAK93432   AY232094   BE975335   BF492015   BF495603   BF497102   BI213217   BI216003   BI232505   BI234248   BI240451   BI354243   BI368166   BI369022   BI372037   BI372323   BI372484   BI565836   BI581688   BI582351   BI591852   BI606585   BI608813   BI613260   BI614034   BI629635   BI634489   BI634572   BP549750   BP549751   BX010632   BX016268   BX042307   BX056744   BX060707   CK131852   CK657440   CK660256   CO155435   CO179322   CO185567   CO279454   CO292280   CO316262   CO317593   CO317663   CO332822   CO339912   EC066660   EC072218   EC077941   EC086549   EC205935   EC213827   EC227033   EC240120   EC251183   EC256997   EC262923   EL884739   EL884740   ES689279   ES694124   ES694843   EV576893   EV580492   EV588648   EV590826   GH752136   GH775872   GH778942   GH801770   GH803901   GH813608   GH814442   GH815196   GH816469   GH820120   GH820944   GH823784   GH829104   GH831598   GH834118   GH837291   GH838334   GH839817   GH843387   GH849596   GH852882   GH862254   GH866953   GH868822   GH873156   GH873870   GH881923   GH885380   GH887958   GH901348   GH901853   GH901993   GH913784   GH915927   GH916463   GH922688   GH924759   GH924982   GH935171   GH938235
UniProtKB/Swiss-Prot	Q9V3G7
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0028688    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0028688 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-06 hour embryonic stages, during late larval stages, at stages throughout the pupal period, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0028688 expression level Developmental Stage   Expression Level embryo 00-02hr    16202 embryo 02-04hr    3895 embryo 04-06hr    7288 embryo 06-08hr    7933 embryo 08-10hr    6356 embryo 10-12hr    7047 embryo 12-14hr    3830 embryo 14-16hr    4673 embryo 16-18hr    3207 embryo 18-20hr    2949 embryo 20-22hr    2406 embryo 22-24hr    2349 larva L1    4558 larva L2    7200 larva L3 12hr old    5521 larva L3 puffstage 1-2    8311 larva L3 puffstage 3-6    14205 larva L3 puffstage 7-9    18732 white prepupae new    21307 white prepupae 12hr    9738 white prepupae 24hr    9362 pupae 2d postWPP    6191 pupae 3d postWPP    5206 pupae 4d postWPP    11471 adult male 01day    7675 adult male 05day    7826 adult male 30day    8207 adult female 01day    10682 adult female 05day    10995 adult female 30day    10941 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (16202) embryo 02-04hr  (3895) embryo 04-06hr  (7288) embryo 06-08hr  (7933) embryo 08-10hr  (6356) embryo 10-12hr  (7047) embryo 12-14hr  (3830) embryo 14-16hr  (4673) embryo 16-18hr  (3207) embryo 18-20hr  (2949) embryo 20-22hr  (2406) embryo 22-24hr  (2349) larva L1  (4558) larva L2  (7200) larva L3 12hr old  (5521) larva L3 puffstage 1-2  (8311) larva L3 puffstage 3-6  (14205) larva L3 puffstage 7-9  (18732) white prepupae new  (21307) white prepupae 12hr  (9738) white prepupae 24hr  (9362) pupae 2d postWPP  (6191) pupae 3d postWPP  (5206) pupae 4d postWPP  (11471) adult male 01day  (7675) adult male 05day  (7826) adult male 30day  (8207) adult female 01day  (10682) adult female 05day  (10995) adult female 30day  (10941) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (16202) embryo 02-04hr  (3895) embryo 04-06hr  (7288) embryo 06-08hr  (7933) embryo 08-10hr  (6356) embryo 10-12hr  (7047) embryo 12-14hr  (3830) embryo 14-16hr  (4673) embryo 16-18hr  (3207) embryo 18-20hr  (2949) embryo 20-22hr  (2406) embryo 22-24hr  (2349) larva L1  (4558) larva L2  (7200) larva L3 12hr old  (5521) larva L3 puffstage 1-2  (8311) larva L3 puffstage 3-6  (14205) larva L3 puffstage 7-9  (18732) white prepupae new  (21307) white prepupae 12hr  (9738) white prepupae 24hr  (9362) pupae 2d postWPP  (6191) pupae 3d postWPP  (5206) pupae 4d postWPP  (11471) adult male 01day  (7675) adult male 05day  (7826) adult male 30day  (8207) adult female 01day  (10682) adult female 05day  (10995) adult female 30day  (10941) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (16202) embryo 02-04hr    3895 embryo 04-06hr    7288 embryo 06-08hr    7933 embryo 08-10hr    6356 embryo 10-12hr    7047 embryo 12-14hr    3830 embryo 14-16hr    4673 embryo 16-18hr    3207 embryo 18-20hr    2949 embryo 20-22hr    2406 embryo 22-24hr    2349 larva L1    4558 larva L2    7200 larva L3 12hr old    5521 larva L3 puffstage 1-2    8311 larva L3 puffstage 3-6  (14205) larva L3 puffstage 7-9  (18732) white prepupae new  (21307) white prepupae 12hr    9738 white prepupae 24hr    9362 pupae 2d postWPP    6191 pupae 3d postWPP    5206 pupae 4d postWPP  (11471) adult male 01day    7675 adult male 05day    7826 adult male 30day    8207 adult female 01day  10682 adult female 05day  (10995) adult female 30day  (10941) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    16202 embryo 02-04hr    3895 embryo 04-06hr    7288 embryo 06-08hr    7933 embryo 08-10hr    6356 embryo 10-12hr    7047 embryo 12-14hr    3830 embryo 14-16hr    4673 embryo 16-18hr    3207 embryo 18-20hr    2949 embryo 20-22hr    2406 embryo 22-24hr    2349 larva L1    4558 larva L2    7200 larva L3 12hr old    5521 larva L3 puffstage 1-2    8311 larva L3 puffstage 3-6    14205 larva L3 puffstage 7-9    18732 white prepupae new    21307 white prepupae 12hr    9738 white prepupae 24hr    9362 pupae 2d postWPP    6191 pupae 3d postWPP    5206 pupae 4d postWPP    11471 adult male 01day    7675 adult male 05day    7826 adult male 30day    8207 adult female 01day    10682 adult female 05day    10995 adult female 30day    10941 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0028688 expression level Developmental Stage   Expression Level embryo 00-02hr    16202 embryo 02-04hr    3895 embryo 04-06hr    7288 embryo 06-08hr    7933 embryo 08-10hr    6356 embryo 10-12hr    7047 embryo 12-14hr    3830 embryo 14-16hr    4673 embryo 16-18hr    3207 embryo 18-20hr    2949 embryo 20-22hr    2406 embryo 22-24hr    2349 larva L1    4558 larva L2    7200 larva L3 12hr old    5521 larva L3 puffstage 1-2    8311 larva L3 puffstage 3-6    14205 larva L3 puffstage 7-9    18732 white prepupae new    21307 white prepupae 12hr    9738 white prepupae 24hr    9362 pupae 2d postWPP    6191 pupae 3d postWPP    5206 pupae 4d postWPP    11471 adult male 01day    7675 adult male 05day    7826 adult male 30day    8207 adult female 01day    10682 adult female 05day    10995 adult female 30day    10941 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (16202) embryo 02-04hr  (3895) embryo 04-06hr  (7288) embryo 06-08hr  (7933) embryo 08-10hr  (6356) embryo 10-12hr  (7047) embryo 12-14hr  (3830) embryo 14-16hr  (4673) embryo 16-18hr  (3207) embryo 18-20hr  (2949) embryo 20-22hr  (2406) embryo 22-24hr  (2349) larva L1  (4558) larva L2  (7200) larva L3 12hr old  (5521) larva L3 puffstage 1-2  (8311) larva L3 puffstage 3-6  (14205) larva L3 puffstage 7-9  (18732) white prepupae new  (21307) white prepupae 12hr  (9738) white prepupae 24hr  (9362) pupae 2d postWPP  (6191) pupae 3d postWPP  (5206) pupae 4d postWPP  (11471) adult male 01day  (7675) adult male 05day  (7826) adult male 30day  (8207) adult female 01day  (10682) adult female 05day  (10995) adult female 30day  (10941) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (16202) embryo 02-04hr  (3895) embryo 04-06hr  (7288) embryo 06-08hr  (7933) embryo 08-10hr  (6356) embryo 10-12hr  (7047) embryo 12-14hr  (3830) embryo 14-16hr  (4673) embryo 16-18hr  (3207) embryo 18-20hr  (2949) embryo 20-22hr  2406 embryo 22-24hr  2349 larva L1  (4558) larva L2  (7200) larva L3 12hr old  (5521) larva L3 puffstage 1-2  (8311) larva L3 puffstage 3-6  (14205) larva L3 puffstage 7-9  (18732) white prepupae new  (21307) white prepupae 12hr  (9738) white prepupae 24hr  (9362) pupae 2d postWPP  (6191) pupae 3d postWPP  (5206) pupae 4d postWPP  (11471) adult male 01day  (7675) adult male 05day  (7826) adult male 30day  (8207) adult female 01day  (10682) adult female 05day  (10995) adult female 30day  (10941) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  16202 embryo 02-04hr    3895 embryo 04-06hr    7288 embryo 06-08hr    7933 embryo 08-10hr    6356 embryo 10-12hr    7047 embryo 12-14hr    3830 embryo 14-16hr    4673 embryo 16-18hr    3207 embryo 18-20hr    2949 embryo 20-22hr    2406 embryo 22-24hr    2349 larva L1    4558 larva L2    7200 larva L3 12hr old    5521 larva L3 puffstage 1-2    8311 larva L3 puffstage 3-6  14205 larva L3 puffstage 7-9  18732 white prepupae new  (21307) white prepupae 12hr    9738 white prepupae 24hr    9362 pupae 2d postWPP    6191 pupae 3d postWPP    5206 pupae 4d postWPP  11471 adult male 01day    7675 adult male 05day    7826 adult male 30day    8207 adult female 01day  10682 adult female 05day  10995 adult female 30day  10941 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    16202 embryo 02-04hr    3895 embryo 04-06hr    7288 embryo 06-08hr    7933 embryo 08-10hr    6356 embryo 10-12hr    7047 embryo 12-14hr    3830 embryo 14-16hr    4673 embryo 16-18hr    3207 embryo 18-20hr    2949 embryo 20-22hr    2406 embryo 22-24hr    2349 larva L1    4558 larva L2    7200 larva L3 12hr old    5521 larva L3 puffstage 1-2    8311 larva L3 puffstage 3-6    14205 larva L3 puffstage 7-9    18732 white prepupae new    21307 white prepupae 12hr    9738 white prepupae 24hr    9362 pupae 2d postWPP    6191 pupae 3d postWPP    5206 pupae 4d postWPP    11471 adult male 01day    7675 adult male 05day    7826 adult male 30day    8207 adult female 01day    10682 adult female 05day    10995 adult female 30day    10941 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0028688    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0028688 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, larval midgut, larval hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval salivary gland, larval trachea, adult ovary, adult testis, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, adult midgut, adult hindgut, adult Malpighian tubules, adult salivary gland, adult spermathecae, adult male accessory gland, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0028688 expression level Tissue   Expression Level Larval Central Nervous System    592.7 Larval Midgut    522.5 Larval Hindgut    651.7 Larval Malpighian Tubules    1379.6 Larval Fat Body    570 Larval Salivary Gland    828 Larval Trachea    656.225 Larval Carcass    1075.9 Adult Head    255.1 Adult Eye    259.825 Adult Brain    175.3 Adult Thoracic-Abdominal Ganglion    201.7 Adult Crop    434.1 Adult Midgut    423.1 Adult Hindgut    358.1 Adult Malpighian Tubules    493.9 Adult Fat Body    542.2 Adult Salivary Gland    280.5 Adult Heart    630.425 Adult VirginFemale Spermatheca    298 Adult InseminatedFemale Spermatheca    319.9 Adult Ovary    677.6 Adult Testis    507.9 Adult Male Accessory Gland    383.5 Adult Carcass    433.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (592.7) Larval Midgut  522.5 Larval Hindgut  (651.7) Larval Malpighian Tubules  (1379.6) Larval Fat Body  (570) Larval Salivary Gland  (828) Larval Trachea  (656.225) Larval Carcass  (1075.9) Adult Head    255.1 Adult Eye    259.825 Adult Brain    175.3 Adult Thoracic-Abdominal Ganglion    201.7 Adult Crop    434.1 Adult Midgut    423.1 Adult Hindgut    358.1 Adult Malpighian Tubules    493.9 Adult Fat Body  (542.2) Adult Salivary Gland    280.5 Adult Heart  (630.425) Adult VirginFemale Spermatheca    298 Adult InseminatedFemale Spermatheca    319.9 Adult Ovary  (677.6) Adult Testis  507.9 Adult Male Accessory Gland    383.5 Adult Carcass    433.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    592.7 Larval Midgut    522.5 Larval Hindgut    651.7 Larval Malpighian Tubules  (1379.6) Larval Fat Body    570 Larval Salivary Gland    828 Larval Trachea    656.225 Larval Carcass  1075.9 Adult Head    255.1 Adult Eye    259.825 Adult Brain    175.3 Adult Thoracic-Abdominal Ganglion    201.7 Adult Crop    434.1 Adult Midgut    423.1 Adult Hindgut    358.1 Adult Malpighian Tubules    493.9 Adult Fat Body    542.2 Adult Salivary Gland    280.5 Adult Heart    630.425 Adult VirginFemale Spermatheca    298 Adult InseminatedFemale Spermatheca    319.9 Adult Ovary    677.6 Adult Testis    507.9 Adult Male Accessory Gland    383.5 Adult Carcass    433.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    592.7 Larval Midgut    522.5 Larval Hindgut    651.7 Larval Malpighian Tubules    1379.6 Larval Fat Body    570 Larval Salivary Gland    828 Larval Trachea    656.225 Larval Carcass    1075.9 Adult Head    255.1 Adult Eye    259.825 Adult Brain    175.3 Adult Thoracic-Abdominal Ganglion    201.7 Adult Crop    434.1 Adult Midgut    423.1 Adult Hindgut    358.1 Adult Malpighian Tubules    493.9 Adult Fat Body    542.2 Adult Salivary Gland    280.5 Adult Heart    630.425 Adult VirginFemale Spermatheca    298 Adult InseminatedFemale Spermatheca    319.9 Adult Ovary    677.6 Adult Testis    507.9 Adult Male Accessory Gland    383.5 Adult Carcass    433.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0028688 expression level Tissue   Expression Level Larval Central Nervous System    592.7 Larval Midgut    522.5 Larval Hindgut    651.7 Larval Malpighian Tubules    1379.6 Larval Fat Body    570 Larval Salivary Gland    828 Larval Trachea    656.225 Larval Carcass    1075.9 Adult Head    255.1 Adult Eye    259.825 Adult Brain    175.3 Adult Thoracic-Abdominal Ganglion    201.7 Adult Crop    434.1 Adult Midgut    423.1 Adult Hindgut    358.1 Adult Malpighian Tubules    493.9 Adult Fat Body    542.2 Adult Salivary Gland    280.5 Adult Heart    630.425 Adult VirginFemale Spermatheca    298 Adult InseminatedFemale Spermatheca    319.9 Adult Ovary    677.6 Adult Testis    507.9 Adult Male Accessory Gland    383.5 Adult Carcass    433.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  592.7 Larval Midgut  522.5 Larval Hindgut  651.7 Larval Malpighian Tubules  (1379.6) Larval Fat Body  570 Larval Salivary Gland  (828) Larval Trachea  656.225 Larval Carcass  (1075.9) Adult Head    255.1 Adult Eye    259.825 Adult Brain    175.3 Adult Thoracic-Abdominal Ganglion    201.7 Adult Crop    434.1 Adult Midgut    423.1 Adult Hindgut    358.1 Adult Malpighian Tubules    493.9 Adult Fat Body  542.2 Adult Salivary Gland    280.5 Adult Heart  630.425 Adult VirginFemale Spermatheca    298 Adult InseminatedFemale Spermatheca    319.9 Adult Ovary  677.6 Adult Testis  507.9 Adult Male Accessory Gland    383.5 Adult Carcass    433.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    592.7 Larval Midgut    522.5 Larval Hindgut    651.7 Larval Malpighian Tubules  1379.6 Larval Fat Body    570 Larval Salivary Gland    828 Larval Trachea    656.225 Larval Carcass  1075.9 Adult Head    255.1 Adult Eye    259.825 Adult Brain    175.3 Adult Thoracic-Abdominal Ganglion    201.7 Adult Crop    434.1 Adult Midgut    423.1 Adult Hindgut    358.1 Adult Malpighian Tubules    493.9 Adult Fat Body    542.2 Adult Salivary Gland    280.5 Adult Heart    630.425 Adult VirginFemale Spermatheca    298 Adult InseminatedFemale Spermatheca    319.9 Adult Ovary    677.6 Adult Testis    507.9 Adult Male Accessory Gland    383.5 Adult Carcass    433.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    592.7 Larval Midgut    522.5 Larval Hindgut    651.7 Larval Malpighian Tubules    1379.6 Larval Fat Body    570 Larval Salivary Gland    828 Larval Trachea    656.225 Larval Carcass    1075.9 Adult Head    255.1 Adult Eye    259.825 Adult Brain    175.3 Adult Thoracic-Abdominal Ganglion    201.7 Adult Crop    434.1 Adult Midgut    423.1 Adult Hindgut    358.1 Adult Malpighian Tubules    493.9 Adult Fat Body    542.2 Adult Salivary Gland    280.5 Adult Heart    630.425 Adult VirginFemale Spermatheca    298 Adult InseminatedFemale Spermatheca    319.9 Adult Ovary    677.6 Adult Testis    507.9 Adult Male Accessory Gland    383.5 Adult Carcass    433.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    255.1   NA  Eye    259.825   NA  Brain    175.3   592.7  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    201.7   NA  Crop    434.1   522.5  Midgut    423.1   651.7  Hindgut    358.1   1379.6  Malpighian Tubules    493.9   570  Fat Body    542.2   828  Salivary Gland    280.5   NA  Heart    630.425   656.225  Trachea    NA   NA  VirginFemale Spermatheca    298   NA  InseminatedFemale Spermatheca    319.9   NA  Ovary    677.6   NA  Testis    507.9   NA  Male Accessory Gland    383.5   1075.9  Carcass    433.6 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_02
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0028688 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5378-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL41407 Rpn7GD11629 lethal | pupal stage, with Scer\GAL4pnr-MD237 Rpn7GD11629 Other Phenotypes Allele neuroanatomy defective | larval stage, with Scer\GAL41407 Rpn7GD11629 Phenotype manifest in Allele embryonic/larval neuroblast | larval stage, with Scer\GAL41407 Rpn7GD11629 ganglion mother cell | larval stage, with Scer\GAL41407 Rpn7GD11629
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Rpn7 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Rpn7 Class Mutagen Stocks Known lesion Rpn7GD11629 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes Rpn7HMS00096 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Rpn7KK109250 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6191 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD11629} NA P{KK109250} NA P{TRiP.HMS00096} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 5 terms )
Molecular Function
CV term Evidence References
endopeptidase activity inferred from direct assay (Holzl et al., 2000)
Biological Process
CV term Evidence References
cellular process inferred from mutant phenotype (Boutros et al., 2004) neurogenesis inferred from mutant phenotype (Neumüller et al., 2011) proteolysis inferred from direct assay AND inferred from sequence or structural similarity with human PSMD6 AND inferred from sequence or structural similarity with Saccharomyces RPN7 (Holzl et al., 2000)
Cellular Component
CV term Evidence References
proteasome regulatory particle inferred from direct assay AND inferred from sequence or structural similarity with human PSMD6 (Holzl et al., 2000)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
proteolysis non-traceable author statement (Swiss-Prot Project Members, 2002.3.1)
Cellular Component
CV term Evidence References
proteasome regulatory particle non-traceable author statement (Swiss-Prot Project Members, 2002.3.1) proteasome regulatory particle, lid subcomplex inferred from sequence or structural similarity with Saccharomyces RPN7 (Holzl et al., 2000) non-traceable author statement (Hoelzl, 1999.4.23)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Rpn7 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 67596 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0028688 DroID - A comprehensive database of gene and protein interactions. • FBgn0028688 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42641
Orthologs
Genome-wide drosophilid orthologs	Dana\GF16564 Dere\GG12513 Dgri\GH18475 Dmoj\GI10792 Dper\GL23337 Dpse\GA18834 Dsec\GM23647 Dsim\GD18456 Dvir\GJ14389 Dwil\GK11396 Dyak\Rpn7
Curated drosophilid orthologs	Dpse\GA18834   Dyak\Rpn7
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL010048-PA Aedes aegypti (mosquito) AGAP002061-PA Anopheles gambiae (mosquito) XP_624697.1 Apis mellifera (honey bee) XP_001946702.1 Acyrthosiphon pisum (pea aphid) At4g24820.1 Arabidopsis thaliana (wall cress) 35114 Batrachochytrium dendrobatidis (chytrid fungus) 209027 Branchiostoma floridae (lancelet) 87657 Branchiostoma floridae (lancelet) XP_001899710.1 Brugia malayi (roundworm nematode) BGIBMGA003212-PA Bombyx mori (silk worm) ENSBTAP00000020108 Bos taurus (bovine) CAL0003998 Candida albicans (a form of yeast) CN27797 Caenorhabditis brenneri (small nematode) CN28443 Caenorhabditis brenneri (small nematode) CBP11932 Caenorhabditis briggsae (nematode) CE03368 Caenorhabditis elegans (worm) ENSCAFP00000010204 Canis familiaris (dog) CAGL0G01672g Candida glabrata (haploid yeast) ENSCINP00000009246 Ciona intestinalis (sea squirt) JA03914 Caenorhabditis japonica (nematode) CMG170C Cyanidioschyzon merolae (red alga) cn11316 Cryptococcus neoformans (yeast-like fungus) cgd2_2210 Cryptosporidium parvum (protozoan parasite) CPIJ003351 Culex pipens (mosquito) ENSCPOP00000005556 Cavia porcellus (guinea pig) 182738 Chlamidomonas reinhardtii (green alga) RP31559 Caenorhabditis remanei (nematode) ENSCSAVP00000013920 Ciona savignyi (sedentary tunicate) 152596 Capitella spl (polychaete worm) DDB0232985 Dictyostelium discoideum (amoeba) DEHA2B06446g Debaryomyces Hansenii (yeast) 305955 Daphnia pulex (daphnia) ENSDARP00000094762 Danio rerio (zebra fish) ENSECAP00000018764 Equus caballus (horse) XP_651402 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000012215 Gymnopilus aculeatus (mushroom) ENSGALP00000011822 Gallus gallus (chicken) GL50803_4331 Giardia lamblia (flagellated protozoan) 103503 Hypsipyla robusta (cedar shoot borer) ENSP00000295901 Homo sapiens (human) ISCW020845-PA Ixodes scapularis (deer tick) KLLA0D14663g Kluyveromyces lactis (yeast) 200903 Lottia gigantea (owl limpet) LmjF32.2820 Leishmania major (virus) 35605 Monocosta brevicollis (choanoflagellate) ENSMODP00000003747 Monodelphis domestica (gray opossum) ENSMMUP00000002009 Macaca mulatta (rhesus monkey) ENSMUSP00000022256 Mus musculus (house mouse) 195005 Nematostella vectensis (starlet anemone) XP_001607901.1 Nasonia vitripennis (wasp) ENSOANP00000003236 Ornithorynchus anatinus (platypus) ENSORLP00000010246 Oryzias latipes (japanese killifish) LOC_Os02g38810.1 Oryza sativa (asian rice) 8701 Ostreococcus tauri (green alga) PF11_0303 Plasmodium falciparum (protozoal parasite) PHUM006641-PA Pediculus humanus (human body louse) PP12410 Pristionchus pacificus (nematode) 184067 Physcomitrella patens (moss) 209895 Physcomitrella patens (moss) ENSPPYP00000015370 Pongo pygmaeus (orangutan) 109023 Phytophthora sojae (root rot pathogen) 575303 Populus trichocarpa (black cottonwood) ENSPTRP00000026037 Pan troglodytes (chimpanzee) PVX_092075 Plasmodium vivax (protozoal parasite) ENSRNOP00000009249 Rattus norvegicus (norway rat) 145313 Sorghum bicolor (sorghum) YPR108W Saccharomyces cerevisiae (budding yeast) Smp_052870 Schistosoma mansoni (trematode parasite) SPBC582.07c Schizosaccharomyces pombe (fission yeast) XP_795620.1 Strongylocentrotus purpuratus (purple sea urchin) 18564 Trichoplax adhaerens (metazoa) TA08210 Theileria annulata (apicomplexan parasite) XP_973643.1 Tribolium castaneum (red flour beetle) Tc00.1047053508707.90 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000014074 Tetraodon nigroviridis (green spotted pufferfish) TP04_0395 Theileria parva (parasitic protozoan) 34018 Thalassiosira pseudonana (marine diatom) ENSTRUP00000023419 Takifugu rubripes (pufferfish Takifugu) 3697.m00197 Tetrahymena thermophila (ciliate protozoa) 93204.m00167 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000014298 Xenopus tropicalis (frog) YALI0B22286g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB19294 NV14096 LH20735 ISCW020845 FBgn0068044 FBgn0213407 FBgn0201602 FBgn0189979 FBgn0178512 JGI_V11_305955 FBgn0078834 FBgn0160927 FBgn0133555 FBgn0125942 FBgn0104801 FBgn0093585 CPIJ003351 BGIBMGA003212 ACYPI009718 GB19406 GB17690 AGAP002061 AAEL010048 PHUM091510 GLEAN_06375
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	34787 y1 sc* v1; P{TRiP.HMS00096}attP2
VDRC	v101467 P{KK109250}VIE-260B v22103 w1118; P{GD11629}v22103 v22104 w1118; P{GD11629}v22104
Genomic Clones ( 2 )
	BACR30J14 BACR48C17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 109 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD47143
Other clones	DPiM_LD47143 yak-ad_Rpn7
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT04552 AT11175 AT28877 GH10329 GH17651 GM15891 LD23239 LP02923 LP04290 LP09907 LP10311 LP10837 LP11625 LP12878 LP18667 LP23743 RE18573 RE22787 RE28581 RE29922 RE37296 RE54085 RE55103 RE57363 RE59260 RE59456 RH07648 RH13516 RH19225 RH20365 RH38656 RH38753 RH42373 RH43316 RH58533 RH63663 RH73162
Other clones	20894 71597 104860 160791 164152 164167 277591 292040 bs01b11 bs41e04 CK01.6D.B8 CK01.112D.F9 Dmel_dig_006120_0644_3510 Dmel_dig_013133_0682_1960 Dmel_neb_008970_0104_3272 Dmel_neb_013933_0381_1403 EC256997 EK010228 EK059117 EK134348 EK199710 EK264242 EK268559 EK268727 EK304743 EN06038 EP09635 FGM103C06 IP15989 RP003041974 RP003051884 RP003080559 RP003128596 RP003133581 RP003165745 RP003178396 RP003182831 RP003214417 RP003215106 RP003225449 RP003231097 RP003234796 RP003238335 RP003242741 RP003246565 RP003253868 RP003254373 RP003273935 RP003298104 RP003307045 RP003334227 RP003340245 RP003356565 RP003357432 RP003380297 RP003422119 RP003450180 RP003468751 RP003482163 RP003485236 RP003504155 RP003508604 RP003523694 RP003530369 RP003569174 RP003576884 RP003646334 RP003659498 RP003672918
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0028688 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42641
Antibody Information
	monoclonal (Lipinszki et al., 2009)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: Rpn7 anon-WO0172774.103 anon-WO0172774.106 (FlyBase, 1996-)
Additional comments	Source for merge of Rpn7 anon-WO0172774.103 anon-WO0172774.106 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004) RNAi screen using dsRNA made from templates generated with primers directed against this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_142791 RefSeq (Proteins) • NP_651048 DDBJ / EMBL / GenBank • AAF08389 AAF56000 AAK93432 AF145308 AI113847 AI515356 AI944419 AW943886 AX260141 AX260144 AY052008 Entrez Gene - A searchable database of RefSeq genes. • 42641 UniProtKB/Swiss-Prot • Q9V3G7
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Proteasome component (PCI) domain (IPR000717) 26S proteasome, regulatory subunit Rpn7 (IPR019585) Winged helix-turn-helix transcription repressor DNA-binding (IPR011991)
Linkouts
	BioGRID - A database of protein and genetic interactions • 67596 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0028688 DroID - A comprehensive database of gene and protein interactions. • FBgn0028688 DRSC - Results from RNAi screens. • FBgn0028688 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0028688 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5378-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0028688 FlyReactome - A curated knowledgebase of Drosophila melanogaster pathways • 99113 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42641 InParanoid A subset of ortholog calls from InParanoid. • AAEL010048-PA Aedes aegypti (mosquito) AGAP002061-PA Anopheles gambiae (mosquito) XP_624697.1 Apis mellifera (honey bee) XP_001946702.1 Acyrthosiphon pisum (pea aphid) At4g24820.1 Arabidopsis thaliana (wall cress) 35114 Batrachochytrium dendrobatidis (chytrid fungus) 209027 Branchiostoma floridae (lancelet) 87657 Branchiostoma floridae (lancelet) XP_001899710.1 Brugia malayi (roundworm nematode) BGIBMGA003212-PA Bombyx mori (silk worm) ENSBTAP00000020108 Bos taurus (bovine) CAL0003998 Candida albicans (a form of yeast) CN27797 Caenorhabditis brenneri (small nematode) CN28443 Caenorhabditis brenneri (small nematode) CBP11932 Caenorhabditis briggsae (nematode) CE03368 Caenorhabditis elegans (worm) ENSCAFP00000010204 Canis familiaris (dog) CAGL0G01672g Candida glabrata (haploid yeast) ENSCINP00000009246 Ciona intestinalis (sea squirt) JA03914 Caenorhabditis japonica (nematode) CMG170C Cyanidioschyzon merolae (red alga) cn11316 Cryptococcus neoformans (yeast-like fungus) cgd2_2210 Cryptosporidium parvum (protozoan parasite) CPIJ003351 Culex pipens (mosquito) ENSCPOP00000005556 Cavia porcellus (guinea pig) 182738 Chlamidomonas reinhardtii (green alga) RP31559 Caenorhabditis remanei (nematode) ENSCSAVP00000013920 Ciona savignyi (sedentary tunicate) 152596 Capitella spl (polychaete worm) DDB0232985 Dictyostelium discoideum (amoeba) DEHA2B06446g Debaryomyces Hansenii (yeast) 305955 Daphnia pulex (daphnia) ENSDARP00000094762 Danio rerio (zebra fish) ENSECAP00000018764 Equus caballus (horse) XP_651402 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000012215 Gymnopilus aculeatus (mushroom) ENSGALP00000011822 Gallus gallus (chicken) GL50803_4331 Giardia lamblia (flagellated protozoan) 103503 Hypsipyla robusta (cedar shoot borer) ENSP00000295901 Homo sapiens (human) ISCW020845-PA Ixodes scapularis (deer tick) KLLA0D14663g Kluyveromyces lactis (yeast) 200903 Lottia gigantea (owl limpet) LmjF32.2820 Leishmania major (virus) 35605 Monocosta brevicollis (choanoflagellate) ENSMODP00000003747 Monodelphis domestica (gray opossum) ENSMMUP00000002009 Macaca mulatta (rhesus monkey) ENSMUSP00000022256 Mus musculus (house mouse) 195005 Nematostella vectensis (starlet anemone) XP_001607901.1 Nasonia vitripennis (wasp) ENSOANP00000003236 Ornithorynchus anatinus (platypus) ENSORLP00000010246 Oryzias latipes (japanese killifish) LOC_Os02g38810.1 Oryza sativa (asian rice) 8701 Ostreococcus tauri (green alga) PF11_0303 Plasmodium falciparum (protozoal parasite) PHUM006641-PA Pediculus humanus (human body louse) PP12410 Pristionchus pacificus (nematode) 184067 Physcomitrella patens (moss) 209895 Physcomitrella patens (moss) ENSPPYP00000015370 Pongo pygmaeus (orangutan) 109023 Phytophthora sojae (root rot pathogen) 575303 Populus trichocarpa (black cottonwood) ENSPTRP00000026037 Pan troglodytes (chimpanzee) PVX_092075 Plasmodium vivax (protozoal parasite) ENSRNOP00000009249 Rattus norvegicus (norway rat) 145313 Sorghum bicolor (sorghum) YPR108W Saccharomyces cerevisiae (budding yeast) Smp_052870 Schistosoma mansoni (trematode parasite) SPBC582.07c Schizosaccharomyces pombe (fission yeast) XP_795620.1 Strongylocentrotus purpuratus (purple sea urchin) 18564 Trichoplax adhaerens (metazoa) TA08210 Theileria annulata (apicomplexan parasite) XP_973643.1 Tribolium castaneum (red flour beetle) Tc00.1047053508707.90 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000014074 Tetraodon nigroviridis (green spotted pufferfish) TP04_0395 Theileria parva (parasitic protozoan) 34018 Thalassiosira pseudonana (marine diatom) ENSTRUP00000023419 Takifugu rubripes (pufferfish Takifugu) 3697.m00197 Tetrahymena thermophila (ciliate protozoa) 93204.m00167 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000014298 Xenopus tropicalis (frog) YALI0B22286g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42641 modMine - Data generated by the modENCODE project. • FBgn0028688 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB19294 NV14096 LH20735 ISCW020845 FBgn0068044 FBgn0213407 FBgn0201602 FBgn0189979 FBgn0178512 JGI_V11_305955 FBgn0078834 FBgn0160927 FBgn0133555 FBgn0125942 FBgn0104801 FBgn0093585 CPIJ003351 BGIBMGA003212 ACYPI009718 GB19406 GB17690 AGAP002061 AAEL010048 PHUM091510 GLEAN_06375
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	141231_at (Kristensen et al., 2005) anon-WO0172774.103   anon-WO0172774.106   CG5378 (Barbash and Lorigan, 2007, Keleman et al., 2009.8.5, Ma et al., 2002, Ni et al., 2011.7.19) p42A (Sumegi et al., 2003, Kurucz et al., 2002, Holzl et al., 2000, Ma et al., 2002, Lipinszki et al., 2009) Rpn7 (Geng and MacDonald, 2007, Barbash and Lorigan, 2007, Nie et al., 2009, Liu and Lehmann, 2008, Ma et al., 2002, Lipinszki et al., 2009, Zhou et al., 2008, Neumüller et al., 2011)
Name Synonym	Rpn7
Secondary FlyBase IDs
	FBgn0046486 FBgn0046488
References ( 35 )
Generate a list of	All references relating to this gene ( 35 )
List References by type	Research paper  ( 17 ) Supplementary material  ( 5 ) Personal communication to FlyBase  ( 5 ) FlyBase analysis  ( 2 ) DNA/RNA sequence record  ( 1 ) Protein sequence record  ( 1 ) Computer file  ( 1 ) Curated genome annotation  ( 1 ) Patent  ( 1 ) Automatic genome annotation  ( 1 )
Recent research papers ( 3 )
	Booker et al., 2011, BMC Genomics 12: 50 False negative rates in Drosophila cell-based RNAi screens: a case study. [FBrf0212969] Neumüller et al., 2011, Cell Stem Cell 8(5): 580--593 Genome-Wide Analysis of Self-Renewal in Drosophila Neural Stem Cells by Transgenic RNAi. [FBrf0213621] Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812] Show all research papers ...