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Gene Dmel\Rpn11

General Information
Symbol	Dmel\Rpn11	Species	D. melanogaster
Name	Rpn11	Annotation symbol	CG18174
Feature type	protein_coding_gene	FlyBase ID	FBgn0028694
Gene Model Status	Current	Stock availability	10 publicly available
Also Known As	p37B, DmS13
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	25C3-25C3	Sequence location	2L:5,058,404..5,059,816 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Rpn11 is referred to in FlyBase by the symbol Dmel\Rpn11 (CG18174, FBgn0028694). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: endopeptidase activity. There is experimental evidence that it is involved in the biological process: cellular process; proteolysis. 6 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Mov34/MPN/PAD-1. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-06 hour embryonic stages, during late larval stages, during early pupal stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, larval/adult midgut, larval hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult ovary, adult testis, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult hindgut, adult spermathecae, adult male accessory gland. Comments on Affy2 ProbeSet: ProbeSet 1628531_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Rpn11. Gene sequence location is 2L:5058404..5059816.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10	References Gemmill et al., 2005, Oncogene 24(21): 3503--3511 Tonoki et al., 2009, Mol. Cell. Biol. 29(4): 1095--1106
FB2012_01	Sequence features BKN29324 HFA03422
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 25C3-25C3   Limits computationally determined from genome sequence between P{lacW}vkgk16721&P{lacW}Cg25Ck00405 and P{lacW}l(2)k11206k11206
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Rpn11 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Rpn11-RA FBtr0079027  NM_135061   1234   308
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Rpn11-PA   FBpp0078664   34.4   308   6.05     NP_608905   AAF52215
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Mov34/MPN/PAD-1 (IPR000555)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA140773   AA141347   AA141348   AE014134 AAF52215   AF145313 AAF08394   AF195189 AAF27818   AI061727   AI106608   AI106834   AI133987   AI134833   AI259187   AI403004   AI511833   AI542881   AY070977 AAL48599   AY232100   BE978173   BF497802   BG632611   BI166912   BI167148   BI214172   BI230383   BI241171   BI354241   BI354302   BI371984   BI566162   BI587922   BI588493   BI589223   BI609248   BI611325   BI625899   BI634296   BX008172   BX031534   BX056616   BX057197   CA806589   CK660837   CO178720   CO273525   CO296029   CO308059   CO321863   CO326982   CO335564   CZ482852   CZ482864   DQ440392   EC077611   EC085259   EC087136   EC195928   EC222741   EC231856   EC232507   EC234846   EC247866   EC260167   EC262244   ES689001   ES691504   ES691525   EV576843   EV577124   EV580544   EV592634
UniProtKB/Swiss-Prot	Q9V3H2
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0028694    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0028694 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 00-06 hour embryonic stages, during late larval stages, during early pupal stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0028694 expression level Developmental Stage   Expression Level embryo 00-02hr    17370 embryo 02-04hr    3959 embryo 04-06hr    7435 embryo 06-08hr    7724 embryo 08-10hr    5823 embryo 10-12hr    5759 embryo 12-14hr    3503 embryo 14-16hr    3732 embryo 16-18hr    2741 embryo 18-20hr    2623 embryo 20-22hr    2123 embryo 22-24hr    1980 larva L1    4512 larva L2    7640 larva L3 12hr old    5465 larva L3 puffstage 1-2    9214 larva L3 puffstage 3-6    17051 larva L3 puffstage 7-9    21920 white prepupae new    24569 white prepupae 12hr    11037 white prepupae 24hr    10341 pupae 2d postWPP    6648 pupae 3d postWPP    4794 pupae 4d postWPP    9497 adult male 01day    6783 adult male 05day    6053 adult male 30day    6430 adult female 01day    12102 adult female 05day    13589 adult female 30day    13533 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (17370) embryo 02-04hr  (3959) embryo 04-06hr  (7435) embryo 06-08hr  (7724) embryo 08-10hr  (5823) embryo 10-12hr  (5759) embryo 12-14hr  (3503) embryo 14-16hr  (3732) embryo 16-18hr  (2741) embryo 18-20hr  (2623) embryo 20-22hr  (2123) embryo 22-24hr  (1980) larva L1  (4512) larva L2  (7640) larva L3 12hr old  (5465) larva L3 puffstage 1-2  (9214) larva L3 puffstage 3-6  (17051) larva L3 puffstage 7-9  (21920) white prepupae new  (24569) white prepupae 12hr  (11037) white prepupae 24hr  (10341) pupae 2d postWPP  (6648) pupae 3d postWPP  (4794) pupae 4d postWPP  (9497) adult male 01day  (6783) adult male 05day  (6053) adult male 30day  (6430) adult female 01day  (12102) adult female 05day  (13589) adult female 30day  (13533) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (17370) embryo 02-04hr  (3959) embryo 04-06hr  (7435) embryo 06-08hr  (7724) embryo 08-10hr  (5823) embryo 10-12hr  (5759) embryo 12-14hr  (3503) embryo 14-16hr  (3732) embryo 16-18hr  (2741) embryo 18-20hr  (2623) embryo 20-22hr  (2123) embryo 22-24hr  (1980) larva L1  (4512) larva L2  (7640) larva L3 12hr old  (5465) larva L3 puffstage 1-2  (9214) larva L3 puffstage 3-6  (17051) larva L3 puffstage 7-9  (21920) white prepupae new  (24569) white prepupae 12hr  (11037) white prepupae 24hr  (10341) pupae 2d postWPP  (6648) pupae 3d postWPP  (4794) pupae 4d postWPP  (9497) adult male 01day  (6783) adult male 05day  (6053) adult male 30day  (6430) adult female 01day  (12102) adult female 05day  (13589) adult female 30day  (13533) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (17370) embryo 02-04hr    3959 embryo 04-06hr    7435 embryo 06-08hr    7724 embryo 08-10hr    5823 embryo 10-12hr    5759 embryo 12-14hr    3503 embryo 14-16hr    3732 embryo 16-18hr    2741 embryo 18-20hr    2623 embryo 20-22hr    2123 embryo 22-24hr    1980 larva L1    4512 larva L2    7640 larva L3 12hr old    5465 larva L3 puffstage 1-2    9214 larva L3 puffstage 3-6  (17051) larva L3 puffstage 7-9  (21920) white prepupae new  (24569) white prepupae 12hr  (11037) white prepupae 24hr  10341 pupae 2d postWPP    6648 pupae 3d postWPP    4794 pupae 4d postWPP    9497 adult male 01day    6783 adult male 05day    6053 adult male 30day    6430 adult female 01day  (12102) adult female 05day  (13589) adult female 30day  (13533) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    17370 embryo 02-04hr    3959 embryo 04-06hr    7435 embryo 06-08hr    7724 embryo 08-10hr    5823 embryo 10-12hr    5759 embryo 12-14hr    3503 embryo 14-16hr    3732 embryo 16-18hr    2741 embryo 18-20hr    2623 embryo 20-22hr    2123 embryo 22-24hr    1980 larva L1    4512 larva L2    7640 larva L3 12hr old    5465 larva L3 puffstage 1-2    9214 larva L3 puffstage 3-6    17051 larva L3 puffstage 7-9    21920 white prepupae new    24569 white prepupae 12hr    11037 white prepupae 24hr    10341 pupae 2d postWPP    6648 pupae 3d postWPP    4794 pupae 4d postWPP    9497 adult male 01day    6783 adult male 05day    6053 adult male 30day    6430 adult female 01day    12102 adult female 05day    13589 adult female 30day    13533 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0028694 expression level Developmental Stage   Expression Level embryo 00-02hr    17370 embryo 02-04hr    3959 embryo 04-06hr    7435 embryo 06-08hr    7724 embryo 08-10hr    5823 embryo 10-12hr    5759 embryo 12-14hr    3503 embryo 14-16hr    3732 embryo 16-18hr    2741 embryo 18-20hr    2623 embryo 20-22hr    2123 embryo 22-24hr    1980 larva L1    4512 larva L2    7640 larva L3 12hr old    5465 larva L3 puffstage 1-2    9214 larva L3 puffstage 3-6    17051 larva L3 puffstage 7-9    21920 white prepupae new    24569 white prepupae 12hr    11037 white prepupae 24hr    10341 pupae 2d postWPP    6648 pupae 3d postWPP    4794 pupae 4d postWPP    9497 adult male 01day    6783 adult male 05day    6053 adult male 30day    6430 adult female 01day    12102 adult female 05day    13589 adult female 30day    13533 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (17370) embryo 02-04hr  (3959) embryo 04-06hr  (7435) embryo 06-08hr  (7724) embryo 08-10hr  (5823) embryo 10-12hr  (5759) embryo 12-14hr  (3503) embryo 14-16hr  (3732) embryo 16-18hr  (2741) embryo 18-20hr  (2623) embryo 20-22hr  (2123) embryo 22-24hr  (1980) larva L1  (4512) larva L2  (7640) larva L3 12hr old  (5465) larva L3 puffstage 1-2  (9214) larva L3 puffstage 3-6  (17051) larva L3 puffstage 7-9  (21920) white prepupae new  (24569) white prepupae 12hr  (11037) white prepupae 24hr  (10341) pupae 2d postWPP  (6648) pupae 3d postWPP  (4794) pupae 4d postWPP  (9497) adult male 01day  (6783) adult male 05day  (6053) adult male 30day  (6430) adult female 01day  (12102) adult female 05day  (13589) adult female 30day  (13533) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (17370) embryo 02-04hr  (3959) embryo 04-06hr  (7435) embryo 06-08hr  (7724) embryo 08-10hr  (5823) embryo 10-12hr  (5759) embryo 12-14hr  (3503) embryo 14-16hr  (3732) embryo 16-18hr  (2741) embryo 18-20hr  (2623) embryo 20-22hr  2123 embryo 22-24hr  1980 larva L1  (4512) larva L2  (7640) larva L3 12hr old  (5465) larva L3 puffstage 1-2  (9214) larva L3 puffstage 3-6  (17051) larva L3 puffstage 7-9  (21920) white prepupae new  (24569) white prepupae 12hr  (11037) white prepupae 24hr  (10341) pupae 2d postWPP  (6648) pupae 3d postWPP  (4794) pupae 4d postWPP  (9497) adult male 01day  (6783) adult male 05day  (6053) adult male 30day  (6430) adult female 01day  (12102) adult female 05day  (13589) adult female 30day  (13533) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  17370 embryo 02-04hr    3959 embryo 04-06hr    7435 embryo 06-08hr    7724 embryo 08-10hr    5823 embryo 10-12hr    5759 embryo 12-14hr    3503 embryo 14-16hr    3732 embryo 16-18hr    2741 embryo 18-20hr    2623 embryo 20-22hr    2123 embryo 22-24hr    1980 larva L1    4512 larva L2    7640 larva L3 12hr old    5465 larva L3 puffstage 1-2    9214 larva L3 puffstage 3-6  17051 larva L3 puffstage 7-9  (21920) white prepupae new  (24569) white prepupae 12hr  11037 white prepupae 24hr  10341 pupae 2d postWPP    6648 pupae 3d postWPP    4794 pupae 4d postWPP    9497 adult male 01day    6783 adult male 05day    6053 adult male 30day    6430 adult female 01day  12102 adult female 05day  13589 adult female 30day  13533 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    17370 embryo 02-04hr    3959 embryo 04-06hr    7435 embryo 06-08hr    7724 embryo 08-10hr    5823 embryo 10-12hr    5759 embryo 12-14hr    3503 embryo 14-16hr    3732 embryo 16-18hr    2741 embryo 18-20hr    2623 embryo 20-22hr    2123 embryo 22-24hr    1980 larva L1    4512 larva L2    7640 larva L3 12hr old    5465 larva L3 puffstage 1-2    9214 larva L3 puffstage 3-6    17051 larva L3 puffstage 7-9    21920 white prepupae new    24569 white prepupae 12hr    11037 white prepupae 24hr    10341 pupae 2d postWPP    6648 pupae 3d postWPP    4794 pupae 4d postWPP    9497 adult male 01day    6783 adult male 05day    6053 adult male 30day    6430 adult female 01day    12102 adult female 05day    13589 adult female 30day    13533 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0028694    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0028694 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, larval/adult midgut, larval hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult ovary, adult testis, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult hindgut, adult spermathecae, adult male accessory gland. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0028694 expression level Tissue   Expression Level Larval Central Nervous System    833.4 Larval Midgut    1077.7 Larval Hindgut    995.8 Larval Malpighian Tubules    1686.7 Larval Fat Body    734.8 Larval Salivary Gland    1016.7 Larval Trachea    854.1 Larval Carcass    1775.35 Adult Head    401.6 Adult Eye    263.725 Adult Brain    276.8 Adult Thoracic-Abdominal Ganglion    280.4 Adult Crop    521.7 Adult Midgut    672.9 Adult Hindgut    489.1 Adult Malpighian Tubules    642.1 Adult Fat Body    1102.2 Adult Salivary Gland    520.8 Adult Heart    1104.95 Adult VirginFemale Spermatheca    453.1 Adult InseminatedFemale Spermatheca    430.2 Adult Ovary    1163.9 Adult Testis    550.1 Adult Male Accessory Gland    455.8 Adult Carcass    743.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (833.4) Larval Midgut  (1077.7) Larval Hindgut  (995.8) Larval Malpighian Tubules  (1686.7) Larval Fat Body  (734.8) Larval Salivary Gland  (1016.7) Larval Trachea  (854.1) Larval Carcass  (1775.35) Adult Head    401.6 Adult Eye    263.725 Adult Brain    276.8 Adult Thoracic-Abdominal Ganglion    280.4 Adult Crop  521.7 Adult Midgut  (672.9) Adult Hindgut    489.1 Adult Malpighian Tubules  (642.1) Adult Fat Body  (1102.2) Adult Salivary Gland  520.8 Adult Heart  (1104.95) Adult VirginFemale Spermatheca    453.1 Adult InseminatedFemale Spermatheca    430.2 Adult Ovary  (1163.9) Adult Testis  (550.1) Adult Male Accessory Gland    455.8 Adult Carcass  (743.5) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    833.4 Larval Midgut  1077.7 Larval Hindgut    995.8 Larval Malpighian Tubules  (1686.7) Larval Fat Body    734.8 Larval Salivary Gland  1016.7 Larval Trachea    854.1 Larval Carcass  (1775.35) Adult Head    401.6 Adult Eye    263.725 Adult Brain    276.8 Adult Thoracic-Abdominal Ganglion    280.4 Adult Crop    521.7 Adult Midgut    672.9 Adult Hindgut    489.1 Adult Malpighian Tubules    642.1 Adult Fat Body  (1102.2) Adult Salivary Gland    520.8 Adult Heart  (1104.95) Adult VirginFemale Spermatheca    453.1 Adult InseminatedFemale Spermatheca    430.2 Adult Ovary  (1163.9) Adult Testis    550.1 Adult Male Accessory Gland    455.8 Adult Carcass    743.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    833.4 Larval Midgut    1077.7 Larval Hindgut    995.8 Larval Malpighian Tubules    1686.7 Larval Fat Body    734.8 Larval Salivary Gland    1016.7 Larval Trachea    854.1 Larval Carcass    1775.35 Adult Head    401.6 Adult Eye    263.725 Adult Brain    276.8 Adult Thoracic-Abdominal Ganglion    280.4 Adult Crop    521.7 Adult Midgut    672.9 Adult Hindgut    489.1 Adult Malpighian Tubules    642.1 Adult Fat Body    1102.2 Adult Salivary Gland    520.8 Adult Heart    1104.95 Adult VirginFemale Spermatheca    453.1 Adult InseminatedFemale Spermatheca    430.2 Adult Ovary    1163.9 Adult Testis    550.1 Adult Male Accessory Gland    455.8 Adult Carcass    743.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0028694 expression level Tissue   Expression Level Larval Central Nervous System    833.4 Larval Midgut    1077.7 Larval Hindgut    995.8 Larval Malpighian Tubules    1686.7 Larval Fat Body    734.8 Larval Salivary Gland    1016.7 Larval Trachea    854.1 Larval Carcass    1775.35 Adult Head    401.6 Adult Eye    263.725 Adult Brain    276.8 Adult Thoracic-Abdominal Ganglion    280.4 Adult Crop    521.7 Adult Midgut    672.9 Adult Hindgut    489.1 Adult Malpighian Tubules    642.1 Adult Fat Body    1102.2 Adult Salivary Gland    520.8 Adult Heart    1104.95 Adult VirginFemale Spermatheca    453.1 Adult InseminatedFemale Spermatheca    430.2 Adult Ovary    1163.9 Adult Testis    550.1 Adult Male Accessory Gland    455.8 Adult Carcass    743.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (833.4) Larval Midgut  (1077.7) Larval Hindgut  (995.8) Larval Malpighian Tubules  (1686.7) Larval Fat Body  734.8 Larval Salivary Gland  (1016.7) Larval Trachea  (854.1) Larval Carcass  (1775.35) Adult Head    401.6 Adult Eye    263.725 Adult Brain    276.8 Adult Thoracic-Abdominal Ganglion    280.4 Adult Crop  521.7 Adult Midgut  672.9 Adult Hindgut    489.1 Adult Malpighian Tubules  642.1 Adult Fat Body  (1102.2) Adult Salivary Gland  520.8 Adult Heart  (1104.95) Adult VirginFemale Spermatheca    453.1 Adult InseminatedFemale Spermatheca    430.2 Adult Ovary  (1163.9) Adult Testis  550.1 Adult Male Accessory Gland    455.8 Adult Carcass  743.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    833.4 Larval Midgut  1077.7 Larval Hindgut    995.8 Larval Malpighian Tubules  1686.7 Larval Fat Body    734.8 Larval Salivary Gland  1016.7 Larval Trachea    854.1 Larval Carcass  (1775.35) Adult Head    401.6 Adult Eye    263.725 Adult Brain    276.8 Adult Thoracic-Abdominal Ganglion    280.4 Adult Crop    521.7 Adult Midgut    672.9 Adult Hindgut    489.1 Adult Malpighian Tubules    642.1 Adult Fat Body  1102.2 Adult Salivary Gland    520.8 Adult Heart  1104.95 Adult VirginFemale Spermatheca    453.1 Adult InseminatedFemale Spermatheca    430.2 Adult Ovary  1163.9 Adult Testis    550.1 Adult Male Accessory Gland    455.8 Adult Carcass    743.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    833.4 Larval Midgut    1077.7 Larval Hindgut    995.8 Larval Malpighian Tubules    1686.7 Larval Fat Body    734.8 Larval Salivary Gland    1016.7 Larval Trachea    854.1 Larval Carcass    1775.35 Adult Head    401.6 Adult Eye    263.725 Adult Brain    276.8 Adult Thoracic-Abdominal Ganglion    280.4 Adult Crop    521.7 Adult Midgut    672.9 Adult Hindgut    489.1 Adult Malpighian Tubules    642.1 Adult Fat Body    1102.2 Adult Salivary Gland    520.8 Adult Heart    1104.95 Adult VirginFemale Spermatheca    453.1 Adult InseminatedFemale Spermatheca    430.2 Adult Ovary    1163.9 Adult Testis    550.1 Adult Male Accessory Gland    455.8 Adult Carcass    743.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    401.6   NA  Eye    263.725   NA  Brain    276.8   833.4  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    280.4   NA  Crop    521.7   1077.7  Midgut    672.9   995.8  Hindgut    489.1   1686.7  Malpighian Tubules    642.1   734.8  Fat Body    1102.2   1016.7  Salivary Gland    520.8   NA  Heart    1104.95   854.1  Trachea    NA   NA  VirginFemale Spermatheca    453.1   NA  InseminatedFemale Spermatheca    430.2   NA  Ovary    1163.9   NA  Testis    550.1   NA  Male Accessory Gland    455.8   1775.35  Carcass    743.5 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_02
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0028694 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG18174-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Rpn11 Stages(s) 4-6 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL4pnr-MD237 Rpn11GD8888 Phenotype manifest in Allele
Classical Alleles ( 4 )
For All Classical Alleles Show
Allele of Rpn11 Class Mutagen Stocks Known lesion Rpn11f00386 piggyBac transposase 3 -- Rpn11BG01694 P-element activity 2 -- Rpn11d07228 1 -- Rpn11f00396 piggyBac transposase 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Rpn11 Class Mutagen Stocks Known lesion Rpn11GD8888 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes Rpn11HMS00071 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8888} NA P{TRiP.HMS00071} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{GT1}Rpn11BG01694 NA PBac{WH}Rpn11f00386 NA PBac{WH}Rpn11f00396 NA insertion of mobile activating element P{XP}Rpn11d07228 NA
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 5 terms )
Molecular Function
CV term Evidence References
endopeptidase activity inferred from direct assay (Holzl et al., 2000)
Biological Process
CV term Evidence References
cellular process inferred from mutant phenotype (Boutros et al., 2004) proteolysis inferred from direct assay AND inferred from sequence or structural similarity with Saccharomyces RPN11 (Holzl et al., 2000) inferred from mutant phenotype (Lundgren et al., 2005)
Cellular Component
CV term Evidence References
microtubule associated complex inferred from direct assay (Hughes et al., 2008) proteasome regulatory particle inferred from direct assay AND inferred from sequence or structural similarity with NCBI:NP_005796 (Holzl et al., 2000)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function ( 0 terms)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
proteasome regulatory particle, lid subcomplex inferred from sequence or structural similarity with Saccharomyces RPN11 (Holzl et al., 2000) non-traceable author statement (Voges, 1999.4.23)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Rpn11 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 59913 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0028694 DroID - A comprehensive database of gene and protein interactions. • FBgn0028694 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33738
Orthologs
Genome-wide drosophilid orthologs	Dana\GF14156 Dere\GG24318 Dgri\GH10267 Dmoj\GI15638 Dper\GL26475 Dpse\GA14824 Dsec\GM18036 Dsim\GD22663 Dvir\GJ10111 Dwil\GK23790 Dyak\Rpn11
Curated drosophilid orthologs	Dpse\GA14824   Dyak\Rpn11
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL004733-PA Aedes aegypti (mosquito) AGAP008617-PA Anopheles gambiae (mosquito) XP_393559.2 Apis mellifera (honey bee) XP_001951704.1 Acyrthosiphon pisum (pea aphid) At5g23540.1 Arabidopsis thaliana (wall cress) 34064 Batrachochytrium dendrobatidis (chytrid fungus) 268138 Branchiostoma floridae (lancelet) 283521 Branchiostoma floridae (lancelet) XP_001895575.1 Brugia malayi (roundworm nematode) BGIBMGA009010-PA Bombyx mori (silk worm) ENSBTAP00000043489 Bos taurus (bovine) CAL0003932 Candida albicans (a form of yeast) CN08373 Caenorhabditis brenneri (small nematode) CBP29272 Caenorhabditis briggsae (nematode) CE19527 Caenorhabditis elegans (worm) ENSCAFP00000014087 Canis familiaris (dog) CAGL0L09152g Candida glabrata (haploid yeast) Chro.60380 Cryptosporidium hominis (obligate parasite) JA01378 Caenorhabditis japonica (nematode) CMC013C Cyanidioschyzon merolae (red alga) cn01207 Cryptococcus neoformans (yeast-like fungus) cgd6_3270 Cryptosporidium parvum (protozoan parasite) CPIJ007692 Culex pipens (mosquito) ENSCPOP00000005304 Cavia porcellus (guinea pig) 24132 Chlamidomonas reinhardtii (green alga) RP15447 Caenorhabditis remanei (nematode) 179690 Capitella spl (polychaete worm) DDB0191298 Dictyostelium discoideum (amoeba) DEHA2F25146g Debaryomyces Hansenii (yeast) 304982 Daphnia pulex (daphnia) ENSDARP00000086334 Danio rerio (zebra fish) ENSECAP00000017708 Equus caballus (horse) XP_650487 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000020011 Gymnopilus aculeatus (mushroom) ENSGALP00000018120 Gallus gallus (chicken) GL50803_16823 Giardia lamblia (flagellated protozoan) 185663 Hypsipyla robusta (cedar shoot borer) ENSP00000386541 Homo sapiens (human) ISCW017120-PA Ixodes scapularis (deer tick) KLLA0E14147g Kluyveromyces lactis (yeast) 195467 Lottia gigantea (owl limpet) LmjF34.0650 Leishmania major (virus) 11954 Monocosta brevicollis (choanoflagellate) ENSMODP00000006581 Monodelphis domestica (gray opossum) ENSMMUP00000015626 Macaca mulatta (rhesus monkey) ENSMUSP00000028278 Mus musculus (house mouse) 239961 Nematostella vectensis (starlet anemone) XP_001606975.1 Nasonia vitripennis (wasp) ENSOANP00000009872 Ornithorynchus anatinus (platypus) ENSORLP00000004834 Oryzias latipes (japanese killifish) LOC_Os01g16190.1 Oryza sativa (asian rice) LOC_Os05g30800.1 Oryza sativa (asian rice) 8550 Ostreococcus tauri (green alga) MAL13P1.343 Plasmodium falciparum (protozoal parasite) PHUM000524-PA Pediculus humanus (human body louse) PP23467 Pristionchus pacificus (nematode) 217733 Physcomitrella patens (moss) ENSPPYP00000014374 Pongo pygmaeus (orangutan) 71716 Phytophthora ramorum (sudden oak death pathogen) 108643 Phytophthora sojae (root rot pathogen) 816489 Populus trichocarpa (black cottonwood) 836439 Populus trichocarpa (black cottonwood) ENSPTRP00000021491 Pan troglodytes (chimpanzee) PVX_115365 Plasmodium vivax (protozoal parasite) ENSRNOP00000006605 Rattus norvegicus (norway rat) 4878298 Sorghum bicolor (sorghum) YFR004W Saccharomyces cerevisiae (budding yeast) SPAC31G5.13 Schizosaccharomyces pombe (fission yeast) XP_780027.1 Strongylocentrotus purpuratus (purple sea urchin) 32120 Trichoplax adhaerens (metazoa) TA11850 Theileria annulata (apicomplexan parasite) XP_966426.1 Tribolium castaneum (red flour beetle) Tc00.1047053509627.30 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000012350 Tetraodon nigroviridis (green spotted pufferfish) TP02_0201 Theileria parva (parasitic protozoan) 33725 Thalassiosira pseudonana (marine diatom) ENSTRUP00000043942 Takifugu rubripes (pufferfish Takifugu) 3719.m00041 Tetrahymena thermophila (ciliate protozoa) 96484.m00074 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000035366 Xenopus tropicalis (frog) YALI0F26411g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB16544 NV14908 NV14902 NV14901 LH24373 ISCW017120 FBgn0068045 FBgn0225752 FBgn0197399 FBgn0194060 FBgn0172943 JGI_V11_304982 FBgn0074851 FBgn0164057 FBgn0138387 FBgn0117748 FBgn0116450 FBgn0091183 CPIJ007692 BGIBMGA009010 ACYPI001186 GB12953 AGAP008617 AAEL004733 PHUM129240 GLEAN_05869
Stocks & Reagents
Stocks Listed in FlyBase ( 10 )
Bloomington	12848 w1118; P{GT1}Rpn11BG01694/CyO 18324 w1118; PBac{WH}Rpn11f00386/CyO 33662 y1 sc* v1; P{TRiP.HMS00071}attP2
Harvard	- P{XP}Rpn11d07228 - PBac{WH}Rpn11f00386 - PBac{WH}Rpn11f00396
Kyoto	114518 yd2 w1118 P{ey-FLP.N}2; PBac{WH}Rpn11f00386 P{neoFRT}40A/CyO y+ 114371 yd2 w1118 P{ey-FLP.N}2 P{GMR-lacZ.C(38.1)}TPN1; P{GT1}Rpn11BG01694 P{neoFRT}40A/CyO y+
VDRC	v19273 w1118 P{GD8888}v19273 v19272 w1118; P{GD8888}v19272
Genomic Clones ( 1 )
	BACR13M11 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 46 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE07468
Other clones	DPiM_RE07468 yak-ad_Rpn11
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT12101 GH06069 GH06665 GH11304 GH11324 GH12392 GH22356 GM15832 GM19944 LD34816 LD43366 LP02542 LP19756 RE07158 RE10181 RE19901 RE38188 RE55995 RH14008 RH17519 RH28846 RH29834 RH31587 RH35329 RH38032 RH66406 SD09388
Other clones	51410 bs75a04 CK00507 CK01641 Dmel_dig_003514_0714_0667 Dmel_dig_003524_0582_2112 Dmel_dig_016056_0621_2704 Dmel_neb_011071_0627_3267 EK057421 EK111326 EK186551 EK212537 EK256537 EN10727 EP05326 ESG014a.E21_D08
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0028694 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33738
Antibody Information
	polyclonal (Tonoki et al., 2009)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	RNAi generated by PCR using primers directed to this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004) RNAi screen using dsRNA made from templates generated with primers directed against this gene causes a cell growth and viability phenotype when assayed in Kc167 and S2R+ cells. (Boutros et al., 2004)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_135061 RefSeq (Proteins) • NP_608905 DDBJ / EMBL / GenBank • AA141347 AA141348 AAF08394 AAF27818 AAF52215 AAL48599 AF145313 AF195189 AY070977 BI167148 CZ482852 CZ482864 Entrez Gene - A searchable database of RefSeq genes. • 33738 UniProtKB/Swiss-Prot • Q9V3H2
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Mov34/MPN/PAD-1 (IPR000555)
Linkouts
	BioGRID - A database of protein and genetic interactions • 59913 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0028694 DroID - A comprehensive database of gene and protein interactions. • FBgn0028694 DRSC - Results from RNAi screens. • FBgn0028694 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0028694 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG18174-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0028694 FlyReactome - A curated knowledgebase of Drosophila melanogaster pathways • 152520 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 33738 InParanoid A subset of ortholog calls from InParanoid. • AAEL004733-PA Aedes aegypti (mosquito) AGAP008617-PA Anopheles gambiae (mosquito) XP_393559.2 Apis mellifera (honey bee) XP_001951704.1 Acyrthosiphon pisum (pea aphid) At5g23540.1 Arabidopsis thaliana (wall cress) 34064 Batrachochytrium dendrobatidis (chytrid fungus) 268138 Branchiostoma floridae (lancelet) 283521 Branchiostoma floridae (lancelet) XP_001895575.1 Brugia malayi (roundworm nematode) BGIBMGA009010-PA Bombyx mori (silk worm) ENSBTAP00000043489 Bos taurus (bovine) CAL0003932 Candida albicans (a form of yeast) CN08373 Caenorhabditis brenneri (small nematode) CBP29272 Caenorhabditis briggsae (nematode) CE19527 Caenorhabditis elegans (worm) ENSCAFP00000014087 Canis familiaris (dog) CAGL0L09152g Candida glabrata (haploid yeast) Chro.60380 Cryptosporidium hominis (obligate parasite) JA01378 Caenorhabditis japonica (nematode) CMC013C Cyanidioschyzon merolae (red alga) cn01207 Cryptococcus neoformans (yeast-like fungus) cgd6_3270 Cryptosporidium parvum (protozoan parasite) CPIJ007692 Culex pipens (mosquito) ENSCPOP00000005304 Cavia porcellus (guinea pig) 24132 Chlamidomonas reinhardtii (green alga) RP15447 Caenorhabditis remanei (nematode) 179690 Capitella spl (polychaete worm) DDB0191298 Dictyostelium discoideum (amoeba) DEHA2F25146g Debaryomyces Hansenii (yeast) 304982 Daphnia pulex (daphnia) ENSDARP00000086334 Danio rerio (zebra fish) ENSECAP00000017708 Equus caballus (horse) XP_650487 Entamoeba histolytica (anaerobic protozoan) ENSGACP00000020011 Gymnopilus aculeatus (mushroom) ENSGALP00000018120 Gallus gallus (chicken) GL50803_16823 Giardia lamblia (flagellated protozoan) 185663 Hypsipyla robusta (cedar shoot borer) ENSP00000386541 Homo sapiens (human) ISCW017120-PA Ixodes scapularis (deer tick) KLLA0E14147g Kluyveromyces lactis (yeast) 195467 Lottia gigantea (owl limpet) LmjF34.0650 Leishmania major (virus) 11954 Monocosta brevicollis (choanoflagellate) ENSMODP00000006581 Monodelphis domestica (gray opossum) ENSMMUP00000015626 Macaca mulatta (rhesus monkey) ENSMUSP00000028278 Mus musculus (house mouse) 239961 Nematostella vectensis (starlet anemone) XP_001606975.1 Nasonia vitripennis (wasp) ENSOANP00000009872 Ornithorynchus anatinus (platypus) ENSORLP00000004834 Oryzias latipes (japanese killifish) LOC_Os01g16190.1 Oryza sativa (asian rice) LOC_Os05g30800.1 Oryza sativa (asian rice) 8550 Ostreococcus tauri (green alga) MAL13P1.343 Plasmodium falciparum (protozoal parasite) PHUM000524-PA Pediculus humanus (human body louse) PP23467 Pristionchus pacificus (nematode) 217733 Physcomitrella patens (moss) ENSPPYP00000014374 Pongo pygmaeus (orangutan) 71716 Phytophthora ramorum (sudden oak death pathogen) 108643 Phytophthora sojae (root rot pathogen) 816489 Populus trichocarpa (black cottonwood) 836439 Populus trichocarpa (black cottonwood) ENSPTRP00000021491 Pan troglodytes (chimpanzee) PVX_115365 Plasmodium vivax (protozoal parasite) ENSRNOP00000006605 Rattus norvegicus (norway rat) 4878298 Sorghum bicolor (sorghum) YFR004W Saccharomyces cerevisiae (budding yeast) SPAC31G5.13 Schizosaccharomyces pombe (fission yeast) XP_780027.1 Strongylocentrotus purpuratus (purple sea urchin) 32120 Trichoplax adhaerens (metazoa) TA11850 Theileria annulata (apicomplexan parasite) XP_966426.1 Tribolium castaneum (red flour beetle) Tc00.1047053509627.30 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000012350 Tetraodon nigroviridis (green spotted pufferfish) TP02_0201 Theileria parva (parasitic protozoan) 33725 Thalassiosira pseudonana (marine diatom) ENSTRUP00000043942 Takifugu rubripes (pufferfish Takifugu) 3719.m00041 Tetrahymena thermophila (ciliate protozoa) 96484.m00074 Trichomonas vaginalis (parasitic flagellated protozoan) ENSXETP00000035366 Xenopus tropicalis (frog) YALI0F26411g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 33738 modMine - Data generated by the modENCODE project. • FBgn0028694 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB16544 NV14908 NV14902 NV14901 LH24373 ISCW017120 FBgn0068045 FBgn0225752 FBgn0197399 FBgn0194060 FBgn0172943 JGI_V11_304982 FBgn0074851 FBgn0164057 FBgn0138387 FBgn0117748 FBgn0116450 FBgn0091183 CPIJ007692 BGIBMGA009010 ACYPI001186 GB12953 AGAP008617 AAEL004733 PHUM129240 GLEAN_05869
Synonyms & Secondary IDs ( 10 )
Reported As
Symbol Synonym	37B (Ma et al., 2002) CG18174 (Dorer et al., 2006, Barbash and Lorigan, 2007, Ma et al., 2002, Gandhi et al., 2007, Hughes et al., 2008, Monzo et al., 2010, Ni et al., 2010.12.1) DmS13 (Sathyanarayanan et al., 2008, Lundgren et al., 2003) p37B (Sumegi et al., 2003, Kurucz et al., 2002, Holzl et al., 2000) Rpn11 (Stuart et al., 2007, Liebl et al., 2006, Georlette et al., 2007, Barbash and Lorigan, 2007, Nie et al., 2009, Sathyanarayanan et al., 2008, Ma et al., 2002, Monzo et al., 2010, Zhou et al., 2008, Lundgren et al., 2003) RPn11 (Hoopfer et al., 2008) RPN11 (Gemmill et al., 2005, Dorer et al., 2006) S13   yip5 (Roxstrom-Lindquist, 1999.10.15)
Name Synonym	Rpn11   yippee interacting protein 5 (Roxstrom-Lindquist, 1999.10.15)
Secondary FlyBase IDs
References ( 37 )
Generate a list of	All references relating to this gene ( 37 )
List References by type	Research paper  ( 22 ) Supplementary material  ( 5 ) Personal communication to FlyBase  ( 3 ) FlyBase analysis  ( 2 ) DNA/RNA sequence record  ( 2 ) Computer file  ( 3 )
Recent research papers ( 3 )
	Booker et al., 2011, BMC Genomics 12: 50 False negative rates in Drosophila cell-based RNAi screens: a case study. [FBrf0212969] Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812] Monzo et al., 2010, Dev. Biol. 340(2): 408--418 Proteomic analysis reveals CCT is a target of Fragile X mental retardation protein regulation in Drosophila. [FBrf0210519] Show all research papers ...