A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\Lnk

General Information
SymbolDmel\LnkSpeciesD. melanogaster
NameLnkAnnotation symbolCG17367
Feature typeprotein_coding_geneFlyBase IDFBgn0028717
Gene Model StatusCurrent Stock availability 8 publicly available
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map96F6-96F6Sequence location3R:21,714,264..21,718,992 [+]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene Lnk is referred to in FlyBase by the symbol Dmel\Lnk (CG17367, FBgn0028717). It is a protein_coding_gene from Drosophila melanogaster. It is reported to have molecular function: signal transducer activity. There is experimental evidence that it is involved in the biological process: positive regulation of insulin receptor signaling pathway; positive regulation of insulin-like growth factor receptor signaling pathway; female mating behavior; regulation of growth. 21 alleles are reported. The phenotypes of these alleles are annotated with: eye; ovary; oocyte; wing blade; wing; egg chamber; ommatidium. It has 6 annotated transcripts and 6 annotated polypeptides. Protein features are: Phenylalanine zipper; Pleckstrin homology domain; Pleckstrin homology-like domain; SH2 domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during early pupal stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1625898_s_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of Lnk. Gene sequence location is 3R:21714264..21718992.

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Description
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FB2013_03
FB2013_02
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
96F6-96F6  
Limits computationally determined from genome sequence between P{PZ}l(3)rQ197rQ197 and P{lacW}scribj7B3  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
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Please see the GBrowse view of Dmel\Lnk for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0300820 FBtr0300819 FBtr0084910 FBtr0084909 FBtr0084911 FBtr0339160 FBtr0339162 FBtr0084936 FBtr0339161 FBtr0084935 FBtr0084937 FBtr0084938 FBpp0084285 FBpp0084284 FBpp0084283 FBpp0290044 FBpp0290043 FBpp0084310 FBpp0084311 FBpp0308306 FBpp0308305 FBpp0084309 FBpp0308304 FBpp0084312 FBti0043699 FBti0065170 FBti0047080 FBti0042888 FBti0072258 FBti0126296 FBti0050733 FBti0052159 FBti0075754 FBti0035977 FBti0112750 FBti0109387 FBti0104200 FBti0126297
Comments on Gene Model
Gene model reviewed during 5.49
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Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0084937
  3113
  723
FBtr0084936
  2918
  723
FBtr0084935
  3287
  723
FBtr0339160
 
  3128
  728
FBtr0339161
 
  3161
  613
FBtr0339162
 
  2951
  608
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
Lnk-PA  
FBpp0084311  
77.0  
723  
6.63  
Lnk-PB  
FBpp0084310  
77.0  
723  
6.63  
Lnk-PC  
FBpp0084309  
77.0  
723  
6.63  
Lnk-PD  
FBpp0308304  
77.5  
728  
6.63  
 
 
Lnk-PE  
FBpp0308305  
65.5  
613  
6.89  
 
 
Lnk-PF  
FBpp0308306  
65.0  
608  
6.89  
 
 
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
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Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
inferred from direct assay
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
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FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult tissues/organs expressed at moderate levels. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 226.725
Larval Midgut
 
 135.6
Larval Hindgut
 
 126.8
Larval Malpighian Tubules
 
 126.7
Larval Fat Body
 
 118.1
Larval Salivary Gland
 
 111.7
Larval Trachea
 
 109.25
Larval Carcass
 
 118.025
Adult Head
 
 141.5
Adult Eye
 
 172.7
Adult Brain
 
 283.6
Adult Thoracic-Abdominal Ganglion
 
 294
Adult Crop
 
 135.2
Adult Midgut
 
 116.7
Adult Hindgut
 
 128.9
Adult Malpighian Tubules
 
 125.6
Adult Fat Body
 
 127.1
Adult Salivary Gland
 
 287.3
Adult Heart
 
 102.725
Adult VirginFemale Spermatheca
 
 116.9
Adult InseminatedFemale Spermatheca
 
 132.8
Adult Ovary
 
 328.7
Adult Testis
 
 46.8
Adult Male Accessory Gland
 
 113.5
Adult Carcass
 
 126
Expression Level Scale
 None 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 226.725
Larval Midgut
 
 135.6
Larval Hindgut
 
 126.8
Larval Malpighian Tubules
 
 126.7
Larval Fat Body
 
 118.1
Larval Salivary Gland
 
 111.7
Larval Trachea
 
 109.25
Larval Carcass
 
 118.025
Adult Head
 
 141.5
Adult Eye
 
 172.7
Adult Brain
 
 283.6
Adult Thoracic-Abdominal Ganglion
 
 294
Adult Crop
 
 135.2
Adult Midgut
 
 116.7
Adult Hindgut
 
 128.9
Adult Malpighian Tubules
 
 125.6
Adult Fat Body
 
 127.1
Adult Salivary Gland
 
 287.3
Adult Heart
 
 102.725
Adult VirginFemale Spermatheca
 
 116.9
Adult InseminatedFemale Spermatheca
 
 132.8
Adult Ovary
 
 328.7
Adult Testis
 
 46.8
Adult Male Accessory Gland
 
 113.5
Adult Carcass
 
 126
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 226.725
Larval Midgut
 
 135.6
Larval Hindgut
 
 126.8
Larval Malpighian Tubules
 
 126.7
Larval Fat Body
 
 118.1
Larval Salivary Gland
 
 111.7
Larval Trachea
 
 109.25
Larval Carcass
 
 118.025
Adult Head
 
 141.5
Adult Eye
 
 172.7
Adult Brain
 
 283.6
Adult Thoracic-Abdominal Ganglion
 
 294
Adult Crop
 
 135.2
Adult Midgut
 
 116.7
Adult Hindgut
 
 128.9
Adult Malpighian Tubules
 
 125.6
Adult Fat Body
 
 127.1
Adult Salivary Gland
 
 287.3
Adult Heart
 
 102.725
Adult VirginFemale Spermatheca
 
 116.9
Adult InseminatedFemale Spermatheca
 
 132.8
Adult Ovary
 
 328.7
Adult Testis
 
 46.8
Adult Male Accessory Gland
 
 113.5
Adult Carcass
 
 126
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 226.725
Larval Midgut
 
 135.6
Larval Hindgut
 
 126.8
Larval Malpighian Tubules
 
 126.7
Larval Fat Body
 
 118.1
Larval Salivary Gland
 
 111.7
Larval Trachea
 
 109.25
Larval Carcass
 
 118.025
Adult Head
 
 141.5
Adult Eye
 
 172.7
Adult Brain
 
 283.6
Adult Thoracic-Abdominal Ganglion
 
 294
Adult Crop
 
 135.2
Adult Midgut
 
 116.7
Adult Hindgut
 
 128.9
Adult Malpighian Tubules
 
 125.6
Adult Fat Body
 
 127.1
Adult Salivary Gland
 
 287.3
Adult Heart
 
 102.725
Adult VirginFemale Spermatheca
 
 116.9
Adult InseminatedFemale Spermatheca
 
 132.8
Adult Ovary
 
 328.7
Adult Testis
 
 46.8
Adult Male Accessory Gland
 
 113.5
Adult Carcass
 
 126
Expression Level Scale
 Very high 
log, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 226.725
Larval Midgut
 
 135.6
Larval Hindgut
 
 126.8
Larval Malpighian Tubules
 
 126.7
Larval Fat Body
 
 118.1
Larval Salivary Gland
 
 111.7
Larval Trachea
 
 109.25
Larval Carcass
 
 118.025
Adult Head
 
 141.5
Adult Eye
 
 172.7
Adult Brain
 
 283.6
Adult Thoracic-Abdominal Ganglion
 
 294
Adult Crop
 
 135.2
Adult Midgut
 
 116.7
Adult Hindgut
 
 128.9
Adult Malpighian Tubules
 
 125.6
Adult Fat Body
 
 127.1
Adult Salivary Gland
 
 287.3
Adult Heart
 
 102.725
Adult VirginFemale Spermatheca
 
 116.9
Adult InseminatedFemale Spermatheca
 
 132.8
Adult Ovary
 
 328.7
Adult Testis
 
 46.8
Adult Male Accessory Gland
 
 113.5
Adult Carcass
 
 126
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 226.725
Larval Midgut
 
 135.6
Larval Hindgut
 
 126.8
Larval Malpighian Tubules
 
 126.7
Larval Fat Body
 
 118.1
Larval Salivary Gland
 
 111.7
Larval Trachea
 
 109.25
Larval Carcass
 
 118.025
Adult Head
 
 141.5
Adult Eye
 
 172.7
Adult Brain
 
 283.6
Adult Thoracic-Abdominal Ganglion
 
 294
Adult Crop
 
 135.2
Adult Midgut
 
 116.7
Adult Hindgut
 
 128.9
Adult Malpighian Tubules
 
 125.6
Adult Fat Body
 
 127.1
Adult Salivary Gland
 
 287.3
Adult Heart
 
 102.725
Adult VirginFemale Spermatheca
 
 116.9
Adult InseminatedFemale Spermatheca
 
 132.8
Adult Ovary
 
 328.7
Adult Testis
 
 46.8
Adult Male Accessory Gland
 
 113.5
Adult Carcass
 
 126
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 226.725
Larval Midgut
 
 135.6
Larval Hindgut
 
 126.8
Larval Malpighian Tubules
 
 126.7
Larval Fat Body
 
 118.1
Larval Salivary Gland
 
 111.7
Larval Trachea
 
 109.25
Larval Carcass
 
 118.025
Adult Head
 
 141.5
Adult Eye
 
 172.7
Adult Brain
 
 283.6
Adult Thoracic-Abdominal Ganglion
 
 294
Adult Crop
 
 135.2
Adult Midgut
 
 116.7
Adult Hindgut
 
 128.9
Adult Malpighian Tubules
 
 125.6
Adult Fat Body
 
 127.1
Adult Salivary Gland
 
 287.3
Adult Heart
 
 102.725
Adult VirginFemale Spermatheca
 
 116.9
Adult InseminatedFemale Spermatheca
 
 132.8
Adult Ovary
 
 328.7
Adult Testis
 
 46.8
Adult Male Accessory Gland
 
 113.5
Adult Carcass
 
 126
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 226.725
Larval Midgut
 
 135.6
Larval Hindgut
 
 126.8
Larval Malpighian Tubules
 
 126.7
Larval Fat Body
 
 118.1
Larval Salivary Gland
 
 111.7
Larval Trachea
 
 109.25
Larval Carcass
 
 118.025
Adult Head
 
 141.5
Adult Eye
 
 172.7
Adult Brain
 
 283.6
Adult Thoracic-Abdominal Ganglion
 
 294
Adult Crop
 
 135.2
Adult Midgut
 
 116.7
Adult Hindgut
 
 128.9
Adult Malpighian Tubules
 
 125.6
Adult Fat Body
 
 127.1
Adult Salivary Gland
 
 287.3
Adult Heart
 
 102.725
Adult VirginFemale Spermatheca
 
 116.9
Adult InseminatedFemale Spermatheca
 
 132.8
Adult Ovary
 
 328.7
Adult Testis
 
 46.8
Adult Male Accessory Gland
 
 113.5
Adult Carcass
 
 126
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 141.5
 
NA 
Eye
 
 172.7
 
NA 
Brain
 
 283.6
 
226.725 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 294
 
NA 
Crop
 
 135.2
 
135.6 
Midgut
 
 116.7
 
126.8 
Hindgut
 
 128.9
 
126.7 
Malpighian Tubules
 
 125.6
 
118.1 
Fat Body
 
 127.1
 
111.7 
Salivary Gland
 
 287.3
 
NA 
Heart
 
 102.725
 
109.25 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 116.9
 
NA 
InseminatedFemale Spermatheca
 
 132.8
 
NA 
Ovary
 
 328.7
 
NA 
Testis
 
 46.8
 
NA 
Male Accessory Gland
 
 113.5
 
118.025 
Carcass
 
 126

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 12
central nervous system, larvae L3
 
 15
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 
 7
head, virgin 4-day female
 
 11
head, virgin 20-day female
 
 9
head, mated 1-day female
 
 9
head, mated 4-day female
 
 9
head, mated 20-day female
 
 9
head, mated 1-day male
 
 14
head, mated 4-day male
 
 14
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 6
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 5
fat body, pupae P8
 
 17
carcass, larvae L3 wandering
 
 11
carcass, 1-day adult
 
 8
carcass, 4-day adult
 
 7
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 17
ovary, mated 4-day female
 
 16
testis, mated 4-day male
 
 4
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 12
central nervous system, larvae L3
 
 15
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 
 7
head, virgin 4-day female
 
 11
head, virgin 20-day female
 
 9
head, mated 1-day female
 
 9
head, mated 4-day female
 
 9
head, mated 20-day female
 
 9
head, mated 1-day male
 
 14
head, mated 4-day male
 
 14
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 6
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 5
fat body, pupae P8
 
 17
carcass, larvae L3 wandering
 
 11
carcass, 1-day adult
 
 8
carcass, 4-day adult
 
 7
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 17
ovary, mated 4-day female
 
 16
testis, mated 4-day male
 
 4
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 12
central nervous system, larvae L3
 
 15
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 
 7
head, virgin 4-day female
 
 11
head, virgin 20-day female
 
 9
head, mated 1-day female
 
 9
head, mated 4-day female
 
 9
head, mated 20-day female
 
 9
head, mated 1-day male
 
 14
head, mated 4-day male
 
 14
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 6
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 5
fat body, pupae P8
 
 17
carcass, larvae L3 wandering
 
 11
carcass, 1-day adult
 
 8
carcass, 4-day adult
 
 7
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 17
ovary, mated 4-day female
 
 16
testis, mated 4-day male
 
 4
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 12
central nervous system, larvae L3
 
 15
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 
 7
head, virgin 4-day female
 
 11
head, virgin 20-day female
 
 9
head, mated 1-day female
 
 9
head, mated 4-day female
 
 9
head, mated 20-day female
 
 9
head, mated 1-day male
 
 14
head, mated 4-day male
 
 14
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 6
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 5
fat body, pupae P8
 
 17
carcass, larvae L3 wandering
 
 11
carcass, 1-day adult
 
 8
carcass, 4-day adult
 
 7
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 17
ovary, mated 4-day female
 
 16
testis, mated 4-day male
 
 4
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 12
central nervous system, larvae L3
 
 15
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 
 7
head, virgin 4-day female
 
 11
head, virgin 20-day female
 
 9
head, mated 1-day female
 
 9
head, mated 4-day female
 
 9
head, mated 20-day female
 
 9
head, mated 1-day male
 
 14
head, mated 4-day male
 
 14
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 6
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 5
fat body, pupae P8
 
 17
carcass, larvae L3 wandering
 
 11
carcass, 1-day adult
 
 8
carcass, 4-day adult
 
 7
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 17
ovary, mated 4-day female
 
 16
testis, mated 4-day male
 
 4
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 12
central nervous system, larvae L3
 
 15
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 
 7
head, virgin 4-day female
 
 11
head, virgin 20-day female
 
 9
head, mated 1-day female
 
 9
head, mated 4-day female
 
 9
head, mated 20-day female
 
 9
head, mated 1-day male
 
 14
head, mated 4-day male
 
 14
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 6
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 5
fat body, pupae P8
 
 17
carcass, larvae L3 wandering
 
 11
carcass, 1-day adult
 
 8
carcass, 4-day adult
 
 7
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 17
ovary, mated 4-day female
 
 16
testis, mated 4-day male
 
 4
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 12
central nervous system, larvae L3
 
 15
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 
 7
head, virgin 4-day female
 
 11
head, virgin 20-day female
 
 9
head, mated 1-day female
 
 9
head, mated 4-day female
 
 9
head, mated 20-day female
 
 9
head, mated 1-day male
 
 14
head, mated 4-day male
 
 14
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 6
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 5
fat body, pupae P8
 
 17
carcass, larvae L3 wandering
 
 11
carcass, 1-day adult
 
 8
carcass, 4-day adult
 
 7
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 17
ovary, mated 4-day female
 
 16
testis, mated 4-day male
 
 4
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 12
central nervous system, larvae L3
 
 15
central nervous system, pupae P8
 
 12
head, virgin 1-day female
 
 7
head, virgin 4-day female
 
 11
head, virgin 20-day female
 
 9
head, mated 1-day female
 
 9
head, mated 4-day female
 
 9
head, mated 20-day female
 
 9
head, mated 1-day male
 
 14
head, mated 4-day male
 
 14
head, mated 20-day male
 
 19
salivary gland, larvae L3 wandering
 
 2
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 6
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 7
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 5
fat body, pupae P8
 
 17
carcass, larvae L3 wandering
 
 11
carcass, 1-day adult
 
 8
carcass, 4-day adult
 
 7
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 17
ovary, mated 4-day female
 
 16
testis, mated 4-day male
 
 4
accessory gland, mated 4-day male
 
 2
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during early pupal stages, in adult female stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 42
embryo 02-04hr
 
 45
embryo 04-06hr
 
 31
embryo 06-08hr
 
 31
embryo 08-10hr
 
 30
embryo 10-12hr
 
 26
embryo 12-14hr
 
 22
embryo 14-16hr
 
 22
embryo 16-18hr
 
 17
embryo 18-20hr
 
 21
embryo 20-22hr
 
 30
embryo 22-24hr
 
 28
larva L1
 
 15
larva L2
 
 8
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 13
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 15
white prepupae 12hr
 
 16
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 12
adult male 01day
 
 13
adult male 05day
 
 14
adult male 30day
 
 14
adult female 01day
 
 21
adult female 05day
 
 25
adult female 30day
 
 26
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (42)
embryo 02-04hr
 (45)
embryo 04-06hr
 (31)
embryo 06-08hr
 (31)
embryo 08-10hr
 (30)
embryo 10-12hr
 26
embryo 12-14hr
 
 22
embryo 14-16hr
 
 22
embryo 16-18hr
 
 17
embryo 18-20hr
 
 21
embryo 20-22hr
 (30)
embryo 22-24hr
 (28)
larva L1
 
 15
larva L2
 
 8
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 13
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 15
white prepupae 12hr
 
 16
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 12
adult male 01day
 
 13
adult male 05day
 
 14
adult male 30day
 
 14
adult female 01day
 
 21
adult female 05day
 
 25
adult female 30day
 26
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 42
embryo 02-04hr
 
 45
embryo 04-06hr
 
 31
embryo 06-08hr
 
 31
embryo 08-10hr
 
 30
embryo 10-12hr
 
 26
embryo 12-14hr
 
 22
embryo 14-16hr
 
 22
embryo 16-18hr
 
 17
embryo 18-20hr
 
 21
embryo 20-22hr
 
 30
embryo 22-24hr
 
 28
larva L1
 
 15
larva L2
 
 8
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 13
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 15
white prepupae 12hr
 
 16
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 12
adult male 01day
 
 13
adult male 05day
 
 14
adult male 30day
 
 14
adult female 01day
 
 21
adult female 05day
 
 25
adult female 30day
 
 26
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 42
embryo 02-04hr
 
 45
embryo 04-06hr
 
 31
embryo 06-08hr
 
 31
embryo 08-10hr
 
 30
embryo 10-12hr
 
 26
embryo 12-14hr
 
 22
embryo 14-16hr
 
 22
embryo 16-18hr
 
 17
embryo 18-20hr
 
 21
embryo 20-22hr
 
 30
embryo 22-24hr
 
 28
larva L1
 
 15
larva L2
 
 8
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 13
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 15
white prepupae 12hr
 
 16
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 12
adult male 01day
 
 13
adult male 05day
 
 14
adult male 30day
 
 14
adult female 01day
 
 21
adult female 05day
 
 25
adult female 30day
 
 26
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 42
embryo 02-04hr
 
 45
embryo 04-06hr
 
 31
embryo 06-08hr
 
 31
embryo 08-10hr
 
 30
embryo 10-12hr
 
 26
embryo 12-14hr
 
 22
embryo 14-16hr
 
 22
embryo 16-18hr
 
 17
embryo 18-20hr
 
 21
embryo 20-22hr
 
 30
embryo 22-24hr
 
 28
larva L1
 
 15
larva L2
 
 8
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 13
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 15
white prepupae 12hr
 
 16
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 12
adult male 01day
 
 13
adult male 05day
 
 14
adult male 30day
 
 14
adult female 01day
 
 21
adult female 05day
 
 25
adult female 30day
 
 26
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (42)
embryo 02-04hr
 (45)
embryo 04-06hr
 31
embryo 06-08hr
 31
embryo 08-10hr
 30
embryo 10-12hr
 26
embryo 12-14hr
 
 22
embryo 14-16hr
 
 22
embryo 16-18hr
 
 17
embryo 18-20hr
 
 21
embryo 20-22hr
 30
embryo 22-24hr
 28
larva L1
 
 15
larva L2
 
 8
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 13
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 15
white prepupae 12hr
 
 16
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 12
adult male 01day
 
 13
adult male 05day
 
 14
adult male 30day
 
 14
adult female 01day
 
 21
adult female 05day
 
 25
adult female 30day
 26
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 42
embryo 02-04hr
 
 45
embryo 04-06hr
 
 31
embryo 06-08hr
 
 31
embryo 08-10hr
 
 30
embryo 10-12hr
 
 26
embryo 12-14hr
 
 22
embryo 14-16hr
 
 22
embryo 16-18hr
 
 17
embryo 18-20hr
 
 21
embryo 20-22hr
 
 30
embryo 22-24hr
 
 28
larva L1
 
 15
larva L2
 
 8
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 13
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 15
white prepupae 12hr
 
 16
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 12
adult male 01day
 
 13
adult male 05day
 
 14
adult male 30day
 
 14
adult female 01day
 
 21
adult female 05day
 
 25
adult female 30day
 
 26
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 42
embryo 02-04hr
 
 45
embryo 04-06hr
 
 31
embryo 06-08hr
 
 31
embryo 08-10hr
 
 30
embryo 10-12hr
 
 26
embryo 12-14hr
 
 22
embryo 14-16hr
 
 22
embryo 16-18hr
 
 17
embryo 18-20hr
 
 21
embryo 20-22hr
 
 30
embryo 22-24hr
 
 28
larva L1
 
 15
larva L2
 
 8
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 13
larva L3 puffstage 7-9
 
 14
white prepupae new
 
 15
white prepupae 12hr
 
 16
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 6
pupae 4d postWPP
 
 12
adult male 01day
 
 13
adult male 05day
 
 14
adult male 30day
 
 14
adult female 01day
 
 21
adult female 05day
 
 25
adult female 30day
 
 26
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 26
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 20
embryonic GM2
 
 12
embryonic Kc167
 
 13
embryonic S1
 
 18
embryonic S3
 
 10
leg disc CME L1
 
 12
wing disc CME-W2
 
 7
wing disc ML-DmD8
 
 11
wing disc ML-DmD9
 
 13
wing disc ML-DmD16-c3
 
 13
wing disc ML-DmD21
 
 9
wing disc ML-DmD32
 
 15
haltere disc ML-DmD17-c3
 
 12
eye-antennal disc ML-DmD11
 
 7
antennal disc ML-DmD20-c5
 
 8
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 12
CNS ML-DmBG2-c2
 
 11
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 
 22
ovary OSC
 
 10
ovary OSS
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 26
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 20
embryonic GM2
 
 12
embryonic Kc167
 
 13
embryonic S1
 
 18
embryonic S3
 
 10
leg disc CME L1
 
 12
wing disc CME-W2
 
 7
wing disc ML-DmD8
 
 11
wing disc ML-DmD9
 
 13
wing disc ML-DmD16-c3
 
 13
wing disc ML-DmD21
 
 9
wing disc ML-DmD32
 
 15
haltere disc ML-DmD17-c3
 
 12
eye-antennal disc ML-DmD11
 
 7
antennal disc ML-DmD20-c5
 
 8
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 12
CNS ML-DmBG2-c2
 
 11
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 
 22
ovary OSC
 
 10
ovary OSS
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 26
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 20
embryonic GM2
 
 12
embryonic Kc167
 
 13
embryonic S1
 
 18
embryonic S3
 
 10
leg disc CME L1
 
 12
wing disc CME-W2
 
 7
wing disc ML-DmD8
 
 11
wing disc ML-DmD9
 
 13
wing disc ML-DmD16-c3
 
 13
wing disc ML-DmD21
 
 9
wing disc ML-DmD32
 
 15
haltere disc ML-DmD17-c3
 
 12
eye-antennal disc ML-DmD11
 
 7
antennal disc ML-DmD20-c5
 
 8
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 12
CNS ML-DmBG2-c2
 
 11
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 
 22
ovary OSC
 
 10
ovary OSS
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 26
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 20
embryonic GM2
 
 12
embryonic Kc167
 
 13
embryonic S1
 
 18
embryonic S3
 
 10
leg disc CME L1
 
 12
wing disc CME-W2
 
 7
wing disc ML-DmD8
 
 11
wing disc ML-DmD9
 
 13
wing disc ML-DmD16-c3
 
 13
wing disc ML-DmD21
 
 9
wing disc ML-DmD32
 
 15
haltere disc ML-DmD17-c3
 
 12
eye-antennal disc ML-DmD11
 
 7
antennal disc ML-DmD20-c5
 
 8
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 12
CNS ML-DmBG2-c2
 
 11
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 
 22
ovary OSC
 
 10
ovary OSS
 
 5
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 26
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 20
embryonic GM2
 
 12
embryonic Kc167
 
 13
embryonic S1
 
 18
embryonic S3
 
 10
leg disc CME L1
 
 12
wing disc CME-W2
 
 7
wing disc ML-DmD8
 
 11
wing disc ML-DmD9
 
 13
wing disc ML-DmD16-c3
 
 13
wing disc ML-DmD21
 
 9
wing disc ML-DmD32
 
 15
haltere disc ML-DmD17-c3
 
 12
eye-antennal disc ML-DmD11
 
 7
antennal disc ML-DmD20-c5
 
 8
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 12
CNS ML-DmBG2-c2
 
 11
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 
 22
ovary OSC
 
 10
ovary OSS
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 26
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 20
embryonic GM2
 
 12
embryonic Kc167
 
 13
embryonic S1
 
 18
embryonic S3
 
 10
leg disc CME L1
 
 12
wing disc CME-W2
 
 7
wing disc ML-DmD8
 
 11
wing disc ML-DmD9
 
 13
wing disc ML-DmD16-c3
 
 13
wing disc ML-DmD21
 
 9
wing disc ML-DmD32
 
 15
haltere disc ML-DmD17-c3
 
 12
eye-antennal disc ML-DmD11
 
 7
antennal disc ML-DmD20-c5
 
 8
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 12
CNS ML-DmBG2-c2
 
 11
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 
 22
ovary OSC
 
 10
ovary OSS
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 26
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 20
embryonic GM2
 
 12
embryonic Kc167
 
 13
embryonic S1
 
 18
embryonic S3
 
 10
leg disc CME L1
 
 12
wing disc CME-W2
 
 7
wing disc ML-DmD8
 
 11
wing disc ML-DmD9
 
 13
wing disc ML-DmD16-c3
 
 13
wing disc ML-DmD21
 
 9
wing disc ML-DmD32
 
 15
haltere disc ML-DmD17-c3
 
 12
eye-antennal disc ML-DmD11
 
 7
antennal disc ML-DmD20-c5
 
 8
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 12
CNS ML-DmBG2-c2
 
 11
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 
 22
ovary OSC
 
 10
ovary OSS
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 26
Schneider line 2 Sg4
 
 12
embryonic 1182-4H
 
 20
embryonic GM2
 
 12
embryonic Kc167
 
 13
embryonic S1
 
 18
embryonic S3
 
 10
leg disc CME L1
 
 12
wing disc CME-W2
 
 7
wing disc ML-DmD8
 
 11
wing disc ML-DmD9
 
 13
wing disc ML-DmD16-c3
 
 13
wing disc ML-DmD21
 
 9
wing disc ML-DmD32
 
 15
haltere disc ML-DmD17-c3
 
 12
eye-antennal disc ML-DmD11
 
 7
antennal disc ML-DmD20-c5
 
 8
mixed discs ML-DmD4-c1
 
 11
CNS ML-DmBG1-c1
 
 12
CNS ML-DmBG2-c2
 
 11
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 
 22
ovary OSC
 
 10
ovary OSS
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 8
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 12
Cadmium 50 mM 6 hrs, larvae L3
 
 2
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 18
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 5
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 
 19
Ethanol 5% 3 hrs, larvae L3
 
 7
Ethanol 10% 3 hrs, larvae L3
 
 6
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 13
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 14
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 4
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 8
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 12
Cadmium 50 mM 6 hrs, larvae L3
 
 2
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 18
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 5
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 
 19
Ethanol 5% 3 hrs, larvae L3
 
 7
Ethanol 10% 3 hrs, larvae L3
 
 6
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 13
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 14
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 4
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 8
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 12
Cadmium 50 mM 6 hrs, larvae L3
 
 2
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 18
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 5
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 
 19
Ethanol 5% 3 hrs, larvae L3
 
 7
Ethanol 10% 3 hrs, larvae L3
 
 6
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 13
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 14
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 4
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 8
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 12
Cadmium 50 mM 6 hrs, larvae L3
 
 2
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 18
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 5
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 
 19
Ethanol 5% 3 hrs, larvae L3
 
 7
Ethanol 10% 3 hrs, larvae L3
 
 6
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 13
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 14
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 4
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 8
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 12
Cadmium 50 mM 6 hrs, larvae L3
 
 2
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 18
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 5
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 
 19
Ethanol 5% 3 hrs, larvae L3
 
 7
Ethanol 10% 3 hrs, larvae L3
 
 6
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 13
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 14
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 4
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 8
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 12
Cadmium 50 mM 6 hrs, larvae L3
 
 2
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 18
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 5
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 
 19
Ethanol 5% 3 hrs, larvae L3
 
 7
Ethanol 10% 3 hrs, larvae L3
 
 6
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 13
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 14
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 4
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 8
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 12
Cadmium 50 mM 6 hrs, larvae L3
 
 2
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 18
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 5
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 
 19
Ethanol 5% 3 hrs, larvae L3
 
 7
Ethanol 10% 3 hrs, larvae L3
 
 6
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 13
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 14
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 4
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 8
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 12
Cadmium 50 mM 6 hrs, larvae L3
 
 2
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 18
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 5
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 
 19
Ethanol 5% 3 hrs, larvae L3
 
 7
Ethanol 10% 3 hrs, larvae L3
 
 6
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 13
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 8
Paraquat 5 mM 48 hrs, 4-day adult
 
 14
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 4
Rotenone 8 μg 12 hrs, larvae L3
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 12 )
For All Classical Alleles Show

Allele of LnkClassMutagenStocksKnown lesion
Lnkd07478amorphic allele - genetic evidence2 Yes
Lnkf026421 --
Lnkf050621 --
LnkMB00388
1 --
Lnk4H2amorphic allele - genetic evidence0 Yes
Lnk4Q3amorphic allele - genetic evidence0 Yes
Lnk6S2amorphic allele - genetic evidence0 Yes
Lnk7K1amorphic allele - genetic evidence0 Yes
LnkDel29amorphic allele - genetic evidence0 Yes
LnkCR642loss of function allele0 Yes
LnkDG10204
0 --
LnkR32F30 Yes
hide Alleles Carried on Transgenic Constructs ( 9 )
For All Alleles Carried on Transgenic Constructs Show

Allele of LnkClassMutagenStocksKnown lesion
LnkGD93621 Yes
LnkHMS024481 Yes
LnkKK1057311 Yes
Lnk+t60 Yes
Lnk+tSF100 Yes
LnkScer\UAS.cSa0 Yes
LnkScer\UAS.P\T.cFa0 Yes
LnkT:Avic\GFP-EGFP0 Yes
LnkY720F0 Yes
hide Aneuploid Aberrations
Partially disrupted in
Disrupted in
Not disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
characterization construct
Insertions
Type of insertions
Name
Expression data
insertion of mobile activating element
insertion of enhancer trap binary system
hide Gene Ontology: Function, Process & Cellular Component ( 9 unique terms )
hide Terms Based on Experimental Evidence ( 5 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component
CV term
References
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term
References
inferred from electronic annotation with InterPro:IPR015012
non-traceable author statement
Biological Process
CV term
References
non-traceable author statement
Cellular Component ( 0 terms)
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
protein-protein
Interacting group
Assay
References
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
Lnk allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
SignaLink - A protein-protein and protein-miRNA interaction database with multi-layered structure and multiple confidence scores.
hide Orthologs
hide OrthoDB Orthologs (30) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG6B2TGS)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
Y
 
Drosophila sechellia
 
Y
 
Drosophila erecta
 
Y
 
Drosophila ananassae
 
Y
 
Drosophila pseudoobscura pseudoobscura
 
Y
 
Drosophila persimilis
 
Y
 
Drosophila willistoni
 
Y
 
Drosophila virilis
 
Y
 
Drosophila mojavensis
 
Y
 
Drosophila grimshawi
 
Y
 
hideOrthologs in non-Drosophila Dipterans (EOG63XVBQ)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Aedes aegypti
Yellow fever mosquito 
 
Anopheles gambiae
Malaria mosquito 
 
Culex quinquefasciatus
Southern house mosquito 
 
hideOrthologs in non-Dipteran Insects (EOG6H18QV)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\LOC552012
 
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG009529
 
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\AECH16342
 
Atta cephalotes
Leafcutter ant 
Acep\ACEP20204
 
Camponotus floridanus
Florida carpenter ant 
Cflo\CFLO21724
 
Harpegnathos saltator
Jerdons jumping ant 
Hsal\HSAL16421
 
Linepithema humile
Argentine ant 
Lhum\LH18603
 
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB12363
 
Solenopsis invicta
Red fire ant 
Sinv\SINV25987
 
Acyrthosiphon pisum
Pea aphid 
 
Bombyx mori
Silkmoth 
 
Pediculus humanus
Human body louse 
 
Tribolium castaneum
Red flour beetle 
 
hideOrthologs in non-Insect Arthropods (EOG6GF1W8)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Daphnia pulex
Water flea 
 
Ixodes scapularis
Deer tick 
 
hideOrthologs in non-Arthropod Metazoa (EOG6F5543)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin 
 
hide Human Orthologs (0)
Gene
OMIM
HGNC
hideAAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila simulans
Drosophila sechellia
Drosophila erecta
Drosophila yakuba
Drosophila ananassae
Drosophila pseudoobscura pseudoobscura
Drosophila persimilis
Drosophila willistoni
Drosophila virilis
Drosophila mojavensis
Drosophila grimshawi
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 8 )
Bloomington
Harvard
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 50 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
hide Other Information
hide Discoverer
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Source for merge of: Lnk CG5908 CG17367
Additional comments
hide Other Comments
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
SignaLink - A protein-protein and protein-miRNA interaction database with multi-layered structure and multiple confidence scores.
hide Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym
Name Synonym
Lnk
 
Secondary FlyBase IDs
  • FBgn0039383
  • FBgn0039384
hide References ( 33 )
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hide Recent research papers ( 5 )
Casso et al., 2012, PLoS ONE 7(3): e33827
Expression and Characterization of Drosophila Signal Peptide Peptidase-Like (sppL), a Gene That Encodes an Intramembrane Protease. [FBrf0217861]
Ferguson et al., 2012, J. Cell Sci. 125(6): 1407--1419
Modulation of gurken translation by insulin and TOR signaling in Drosophila. [FBrf0218097]
Alic et al., 2011, Mol. Syst. Biol. 7: 502
Genome-wide dFOXO targets and topology of the transcriptomic response to stress and insulin signalling. [FBrf0214014]
Slack et al., 2011, Aging Cell 10(5): 735--748
dFOXO-independent effects of reduced insulin-like signaling in Drosophila. [FBrf0215229]
Wigby et al., 2011, Proc. Biol. Sci. 278(1704): 424--431
Insulin signalling regulates remating in female Drosophila. [FBrf0212666]