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Gene Dmel\CR18166

General Information
Symbol	Dmel\CR18166	Species	D. melanogaster
Name		Annotation symbol	CR18166
Feature type	pseudogene_attribute	FlyBase ID	FBgn0029526
Gene Model Status	Current	Stock availability	None publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	1B4-1B4	Sequence location	X:373,897..375,842 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CR18166 (FBgn0029526). It is a pseudogene_attribute from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has 2 annotated transcripts. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1632896_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CR18166. Gene sequence location is X:373897..375842.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN42363 HFA18147
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 1B4-1B4   Limits computationally determined from genome sequence between P{EP}CG17896EP1320&P{EP}EP1398 and P{EP}svrEP356&P{EP}argEP452
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CR18166 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Pseudogene similar to CG18273; proximate; partial; created by tandem triplication.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt)   CR18166-RA FBtr0070095  NM_166843   1844   CR18166-RB FBtr0301337     1504
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence   Name AI063108   AW940100   AY059436 AAL13342   BT031232   BT031246   BT032827   CO188534   GH291248
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0029526    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0029526 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed at stages throughout the pupal period. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0029526 expression level Developmental Stage   Expression Level embryo 00-02hr    55 embryo 02-04hr    215 embryo 04-06hr    398 embryo 06-08hr    242 embryo 08-10hr    180 embryo 10-12hr    119 embryo 12-14hr    72 embryo 14-16hr    50 embryo 16-18hr    50 embryo 18-20hr    53 embryo 20-22hr    69 embryo 22-24hr    63 larva L1    140 larva L2    94 larva L3 12hr old    93 larva L3 puffstage 1-2    204 larva L3 puffstage 3-6    253 larva L3 puffstage 7-9    381 white prepupae new    315 white prepupae 12hr    486 white prepupae 24hr    530 pupae 2d postWPP    503 pupae 3d postWPP    270 pupae 4d postWPP    295 adult male 01day    219 adult male 05day    316 adult male 30day    231 adult female 01day    168 adult female 05day    157 adult female 30day    150 Expression Level Scale  None   Extremely low   Very low   Low   Moderate  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    55 embryo 02-04hr  (215) embryo 04-06hr  (398) embryo 06-08hr  (242) embryo 08-10hr  (180) embryo 10-12hr  (119) embryo 12-14hr    72 embryo 14-16hr    50 embryo 16-18hr    50 embryo 18-20hr    53 embryo 20-22hr    69 embryo 22-24hr    63 larva L1  (140) larva L2    94 larva L3 12hr old    93 larva L3 puffstage 1-2  (204) larva L3 puffstage 3-6  (253) larva L3 puffstage 7-9  (381) white prepupae new  (315) white prepupae 12hr  (486) white prepupae 24hr  (530) pupae 2d postWPP  (503) pupae 3d postWPP  (270) pupae 4d postWPP  (295) adult male 01day  (219) adult male 05day  (316) adult male 30day  (231) adult female 01day  (168) adult female 05day  (157) adult female 30day  (150) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    55 embryo 02-04hr    215 embryo 04-06hr    398 embryo 06-08hr    242 embryo 08-10hr    180 embryo 10-12hr    119 embryo 12-14hr    72 embryo 14-16hr    50 embryo 16-18hr    50 embryo 18-20hr    53 embryo 20-22hr    69 embryo 22-24hr    63 larva L1    140 larva L2    94 larva L3 12hr old    93 larva L3 puffstage 1-2    204 larva L3 puffstage 3-6    253 larva L3 puffstage 7-9    381 white prepupae new    315 white prepupae 12hr    486 white prepupae 24hr    530 pupae 2d postWPP    503 pupae 3d postWPP    270 pupae 4d postWPP    295 adult male 01day    219 adult male 05day    316 adult male 30day    231 adult female 01day    168 adult female 05day    157 adult female 30day    150 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    55 embryo 02-04hr    215 embryo 04-06hr    398 embryo 06-08hr    242 embryo 08-10hr    180 embryo 10-12hr    119 embryo 12-14hr    72 embryo 14-16hr    50 embryo 16-18hr    50 embryo 18-20hr    53 embryo 20-22hr    69 embryo 22-24hr    63 larva L1    140 larva L2    94 larva L3 12hr old    93 larva L3 puffstage 1-2    204 larva L3 puffstage 3-6    253 larva L3 puffstage 7-9    381 white prepupae new    315 white prepupae 12hr    486 white prepupae 24hr    530 pupae 2d postWPP    503 pupae 3d postWPP    270 pupae 4d postWPP    295 adult male 01day    219 adult male 05day    316 adult male 30day    231 adult female 01day    168 adult female 05day    157 adult female 30day    150 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    55 embryo 02-04hr    215 embryo 04-06hr    398 embryo 06-08hr    242 embryo 08-10hr    180 embryo 10-12hr    119 embryo 12-14hr    72 embryo 14-16hr    50 embryo 16-18hr    50 embryo 18-20hr    53 embryo 20-22hr    69 embryo 22-24hr    63 larva L1    140 larva L2    94 larva L3 12hr old    93 larva L3 puffstage 1-2    204 larva L3 puffstage 3-6    253 larva L3 puffstage 7-9    381 white prepupae new    315 white prepupae 12hr    486 white prepupae 24hr    530 pupae 2d postWPP    503 pupae 3d postWPP    270 pupae 4d postWPP    295 adult male 01day    219 adult male 05day    316 adult male 30day    231 adult female 01day    168 adult female 05day    157 adult female 30day    150 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0029526 expression level Developmental Stage   Expression Level embryo 00-02hr    55 embryo 02-04hr    215 embryo 04-06hr    398 embryo 06-08hr    242 embryo 08-10hr    180 embryo 10-12hr    119 embryo 12-14hr    72 embryo 14-16hr    50 embryo 16-18hr    50 embryo 18-20hr    53 embryo 20-22hr    69 embryo 22-24hr    63 larva L1    140 larva L2    94 larva L3 12hr old    93 larva L3 puffstage 1-2    204 larva L3 puffstage 3-6    253 larva L3 puffstage 7-9    381 white prepupae new    315 white prepupae 12hr    486 white prepupae 24hr    530 pupae 2d postWPP    503 pupae 3d postWPP    270 pupae 4d postWPP    295 adult male 01day    219 adult male 05day    316 adult male 30day    231 adult female 01day    168 adult female 05day    157 adult female 30day    150 Expression Level Scale  None   Extremely low   Very low   Low   Moderate  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    55 embryo 02-04hr  (215) embryo 04-06hr  (398) embryo 06-08hr  (242) embryo 08-10hr  (180) embryo 10-12hr  119 embryo 12-14hr    72 embryo 14-16hr    50 embryo 16-18hr    50 embryo 18-20hr    53 embryo 20-22hr    69 embryo 22-24hr    63 larva L1  140 larva L2    94 larva L3 12hr old    93 larva L3 puffstage 1-2  (204) larva L3 puffstage 3-6  (253) larva L3 puffstage 7-9  (381) white prepupae new  (315) white prepupae 12hr  (486) white prepupae 24hr  (530) pupae 2d postWPP  (503) pupae 3d postWPP  (270) pupae 4d postWPP  (295) adult male 01day  (219) adult male 05day  (316) adult male 30day  (231) adult female 01day  (168) adult female 05day  (157) adult female 30day  (150) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    55 embryo 02-04hr    215 embryo 04-06hr    398 embryo 06-08hr    242 embryo 08-10hr    180 embryo 10-12hr    119 embryo 12-14hr    72 embryo 14-16hr    50 embryo 16-18hr    50 embryo 18-20hr    53 embryo 20-22hr    69 embryo 22-24hr    63 larva L1    140 larva L2    94 larva L3 12hr old    93 larva L3 puffstage 1-2    204 larva L3 puffstage 3-6    253 larva L3 puffstage 7-9    381 white prepupae new    315 white prepupae 12hr    486 white prepupae 24hr    530 pupae 2d postWPP    503 pupae 3d postWPP    270 pupae 4d postWPP    295 adult male 01day    219 adult male 05day    316 adult male 30day    231 adult female 01day    168 adult female 05day    157 adult female 30day    150 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    55 embryo 02-04hr    215 embryo 04-06hr    398 embryo 06-08hr    242 embryo 08-10hr    180 embryo 10-12hr    119 embryo 12-14hr    72 embryo 14-16hr    50 embryo 16-18hr    50 embryo 18-20hr    53 embryo 20-22hr    69 embryo 22-24hr    63 larva L1    140 larva L2    94 larva L3 12hr old    93 larva L3 puffstage 1-2    204 larva L3 puffstage 3-6    253 larva L3 puffstage 7-9    381 white prepupae new    315 white prepupae 12hr    486 white prepupae 24hr    530 pupae 2d postWPP    503 pupae 3d postWPP    270 pupae 4d postWPP    295 adult male 01day    219 adult male 05day    316 adult male 30day    231 adult female 01day    168 adult female 05day    157 adult female 30day    150 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    55 embryo 02-04hr    215 embryo 04-06hr    398 embryo 06-08hr    242 embryo 08-10hr    180 embryo 10-12hr    119 embryo 12-14hr    72 embryo 14-16hr    50 embryo 16-18hr    50 embryo 18-20hr    53 embryo 20-22hr    69 embryo 22-24hr    63 larva L1    140 larva L2    94 larva L3 12hr old    93 larva L3 puffstage 1-2    204 larva L3 puffstage 3-6    253 larva L3 puffstage 7-9    381 white prepupae new    315 white prepupae 12hr    486 white prepupae 24hr    530 pupae 2d postWPP    503 pupae 3d postWPP    270 pupae 4d postWPP    295 adult male 01day    219 adult male 05day    316 adult male 30day    231 adult female 01day    168 adult female 05day    157 adult female 30day    150 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0029526    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0029526 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0029526 expression level Tissue   Expression Level Larval Central Nervous System    29.5 Larval Midgut no informative data Larval Hindgut    11.8 Larval Malpighian Tubules    9.2 Larval Fat Body no informative data Larval Salivary Gland    7.4 Larval Trachea    8.75 Larval Carcass    8.4 Adult Head    16.6 Adult Eye    16.125 Adult Brain    63.2 Adult Thoracic-Abdominal Ganglion    51.7 Adult Crop no informative data Adult Midgut no informative data Adult Hindgut    7.8 Adult Malpighian Tubules    6.9 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    23.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    5.7 Adult Testis    7.3 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    29.5 Larval Midgut no informative data Larval Hindgut    11.8 Larval Malpighian Tubules    9.2 Larval Fat Body no informative data Larval Salivary Gland    7.4 Larval Trachea    8.75 Larval Carcass    8.4 Adult Head    16.6 Adult Eye    16.125 Adult Brain    63.2 Adult Thoracic-Abdominal Ganglion    51.7 Adult Crop no informative data Adult Midgut no informative data Adult Hindgut    7.8 Adult Malpighian Tubules    6.9 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    23.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    5.7 Adult Testis    7.3 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    29.5 Larval Midgut no informative data Larval Hindgut    11.8 Larval Malpighian Tubules    9.2 Larval Fat Body no informative data Larval Salivary Gland    7.4 Larval Trachea    8.75 Larval Carcass    8.4 Adult Head    16.6 Adult Eye    16.125 Adult Brain    63.2 Adult Thoracic-Abdominal Ganglion    51.7 Adult Crop no informative data Adult Midgut no informative data Adult Hindgut    7.8 Adult Malpighian Tubules    6.9 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    23.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    5.7 Adult Testis    7.3 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    29.5 Larval Midgut no informative data Larval Hindgut    11.8 Larval Malpighian Tubules    9.2 Larval Fat Body no informative data Larval Salivary Gland    7.4 Larval Trachea    8.75 Larval Carcass    8.4 Adult Head    16.6 Adult Eye    16.125 Adult Brain    63.2 Adult Thoracic-Abdominal Ganglion    51.7 Adult Crop no informative data Adult Midgut no informative data Adult Hindgut    7.8 Adult Malpighian Tubules    6.9 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    23.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    5.7 Adult Testis    7.3 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0029526 expression level Tissue   Expression Level Larval Central Nervous System    29.5 Larval Midgut no informative data Larval Hindgut    11.8 Larval Malpighian Tubules    9.2 Larval Fat Body no informative data Larval Salivary Gland    7.4 Larval Trachea    8.75 Larval Carcass    8.4 Adult Head    16.6 Adult Eye    16.125 Adult Brain    63.2 Adult Thoracic-Abdominal Ganglion    51.7 Adult Crop no informative data Adult Midgut no informative data Adult Hindgut    7.8 Adult Malpighian Tubules    6.9 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    23.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    5.7 Adult Testis    7.3 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    29.5 Larval Midgut no informative data Larval Hindgut    11.8 Larval Malpighian Tubules    9.2 Larval Fat Body no informative data Larval Salivary Gland    7.4 Larval Trachea    8.75 Larval Carcass    8.4 Adult Head    16.6 Adult Eye    16.125 Adult Brain    63.2 Adult Thoracic-Abdominal Ganglion    51.7 Adult Crop no informative data Adult Midgut no informative data Adult Hindgut    7.8 Adult Malpighian Tubules    6.9 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    23.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    5.7 Adult Testis    7.3 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    29.5 Larval Midgut no informative data Larval Hindgut    11.8 Larval Malpighian Tubules    9.2 Larval Fat Body no informative data Larval Salivary Gland    7.4 Larval Trachea    8.75 Larval Carcass    8.4 Adult Head    16.6 Adult Eye    16.125 Adult Brain    63.2 Adult Thoracic-Abdominal Ganglion    51.7 Adult Crop no informative data Adult Midgut no informative data Adult Hindgut    7.8 Adult Malpighian Tubules    6.9 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    23.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    5.7 Adult Testis    7.3 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    29.5 Larval Midgut no informative data Larval Hindgut    11.8 Larval Malpighian Tubules    9.2 Larval Fat Body no informative data Larval Salivary Gland    7.4 Larval Trachea    8.75 Larval Carcass    8.4 Adult Head    16.6 Adult Eye    16.125 Adult Brain    63.2 Adult Thoracic-Abdominal Ganglion    51.7 Adult Crop no informative data Adult Midgut no informative data Adult Hindgut    7.8 Adult Malpighian Tubules    6.9 Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart    23.15 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary    5.7 Adult Testis    7.3 Adult Male Accessory Gland no informative data Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut no informative data Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body no informative data Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop no informative data Adult Midgut no informative data Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body no informative data Adult Salivary Gland no informative data Adult Heart     Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca no informative data Adult Ovary     Adult Testis     Adult Male Accessory Gland no informative data Adult Carcass no informative data FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    16.6   NA  Eye    16.125   NA  Brain    63.2   29.5  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    51.7   NA  Crop    no informative data   no informative data  Midgut    no informative data   11.8  Hindgut    7.8   9.2  Malpighian Tubules    6.9   no informative data  Fat Body    no informative data   7.4  Salivary Gland    no informative data   NA  Heart    23.15   8.75  Trachea    NA   NA  VirginFemale Spermatheca    no informative data   NA  InseminatedFemale Spermatheca    no informative data   NA  Ovary    5.7   NA  Testis    7.3   NA  Male Accessory Gland    no informative data   8.4  Carcass    no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
External Data & Images
Linkouts	FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG18166-RB;CG18166-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CR18166 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CR18166 Class Mutagen Stocks Known lesion CR18166KK116055 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(1)Exel6221 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{KK116055} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	non_protein_coding_gene (FlyBase Genome Annotators, 2008) nuclear_gene   pseudogene_attribute (FlyBase Genome Annotators, 2008)
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CR18166 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0029526
Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs	Dpse\GA14820
Linkouts
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 1 )
	BACR08O05 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 6 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH02584
Other clones	IP21832 IP21932 IP22132
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	DMG6-chrX.1.015.pred.a EK040833
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0029526 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 30992
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	CG18166 renamed CR18166 in release 5.13; pseudogene (partial duplication) of adjacent gene, CG18273. (FlyBase Genome Annotators, 2008) CG18166 is required for os-induced Stat92E phosphorylation. (Baeg et al., 2005) S2-derived S2-NP cells are treated with dsRNA made from templates generated with primers directed against CG18166 to assess the role of this gene in Stat92E tyrosine phosphorylation. (Baeg et al., 2005)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_166843 DDBJ / EMBL / GenBank • AAF45507.4 AAL13342 AAO41629.1 AI063108 AW940100 AY059436 Entrez Gene - A searchable database of RefSeq genes. • 30992 UniProtKB/TrEMBL • Q9W5F9
Other Crossreferences
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0029526 DRSC - Results from RNAi screens. • FBgn0029526 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG18166-RB;CG18166-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0029526 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 30992 modMine - Data generated by the modENCODE project. • FBgn0029526
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	BEST:GH02584   CG13372 (Luschnig, 2003.12.17, ) CG18166 (Keleman et al., 2009.8.5) CR18166 (FlyBase Genome Annotators, 2008)
Name Synonym	CG18166
Secondary FlyBase IDs
	FBgn0043840
References ( 13 )
Research paper	Baeg et al., 2005, Genes Dev. 19(16): 1861--1870 Genome-wide RNAi analysis of JAK/STAT signaling components in Drosophila. [FBrf0187589] Yeramian and Jones, 2003, Nucleic Acids Res. 31(13): 3843--3849 GeneFizz: a web tool to compare genetic (coding/non-coding) and physical (helix/coil) segmentations of DNA sequences. Gene discovery and evolutionary perspectives. [FBrf0161576] Benos et al., 2001, Genome Res. 11(5): 710--730 From First Base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. [FBrf0135823]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Luschnig, 2003.12.17, Existence-uncertain genes. Existence-uncertain genes. [FBrf0173248] Benos and Whitfield, 2000.6.2, FlyBase error report on Fri Jun 2 20:18:18 2000. FlyBase error report on Fri Jun 2 20:18:18 2000. [FBrf0129176] Benos, 2000.12.13, FlyBase error report on Wed Dec 13 14:35:56 2000. FlyBase error report on Wed Dec 13 14:35:56 2000. [FBrf0133222] Benos, 2000.12.13, FlyBase error report on Wed Dec 13 15:13:37 2000. FlyBase error report on Wed Dec 13 15:13:37 2000. [FBrf0133223] Millburn, 2000.11.22, FlyBase error report on Wed Nov 22 14:23:55 2000. FlyBase error report on Wed Nov 22 14:23:55 2000. [FBrf0133224]
FlyBase analysis	FlyBase Genome Annotators, 2008, Changes affecting gene model number or type in release 5.13 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 5.13 of the annotated D.melanogaster genome. [FBrf0205930]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
DNA/RNA sequence record	Stapleton, 2001.10.8, GenBank/EMBL/DDBJ: AY059436 Drosophila melanogaster GH02584 full length cDNA. [FBrf0140202]