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Gene Dmel\CG2938

General Information
Symbol	Dmel\CG2938	Species	D. melanogaster
Name		Annotation symbol	CG2938
Feature type	protein_coding_gene	FlyBase ID	FBgn0029685
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	3F7-3F7	Sequence location	X:3,826,189..3,830,284 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG2938 (FBgn0029685). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: lateral inhibition. 4 alleles are reported. The phenotypes of these alleles are annotated with: chaeta; mesothoracic tergum. It has one annotated transcript and one annotated polypeptide. Protein features are: Cas1p-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, larval/adult midgut, larval hindgut, larval/adult Malpighian tubules, larval/adult salivary gland, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1627822_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG2938. Gene sequence location is X:3826189..3830284.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN21226 HFA18243
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 3F7-3F7   Limits computationally determined from genome sequence between P{EP}CG2930EP1352 and P{EP}EP425
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG2938 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG2938-RB FBtr0070627  NM_130729   3643   862
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG2938-PB   FBpp0070597   98.2   862   7.49     NP_570085   AAF45907
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Cas1p-like (IPR012419)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA817251   AA951654   AA979564   AE014298 AAF45907   AI531749   AI533231   AI533888   AI534372   AW942641   AW944279   AY069500 AAL39645   AY095533 AAM12264   BG636696   BI173252   BI213964   BI231604   BI236084   BI242447   BI242610   BI361804   BI362723   BI363835   BI364503   BI365408   BI366906   BI368648   BI369404   BI370031   BI482162   BI484051   BI484055   BI484060   BI484509   BI486913   BI487030   BQ103344   CO188647   CO190229   CO267663   CO274202   CO275041   CO276368   CO276684   CO276921   CO293535   CO293544   CO309605   CO343020   CO343961   CZ487917   EC082877   EC209053   EC213277   EC220343   EC222117   EC224263   EC229711   EC232224   EC232587   EC243412   EC247180   EC255014   EC258430   EV593850
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8T3H4 Q9W4P0
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0029685    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0029685 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0029685 expression level Developmental Stage   Expression Level embryo 00-02hr    4377 embryo 02-04hr    3637 embryo 04-06hr    911 embryo 06-08hr    754 embryo 08-10hr    1165 embryo 10-12hr    1077 embryo 12-14hr    924 embryo 14-16hr    1217 embryo 16-18hr    1119 embryo 18-20hr    723 embryo 20-22hr    905 embryo 22-24hr    1032 larva L1    532 larva L2    687 larva L3 12hr old    589 larva L3 puffstage 1-2    675 larva L3 puffstage 3-6    1001 larva L3 puffstage 7-9    1267 white prepupae new    1420 white prepupae 12hr    850 white prepupae 24hr    726 pupae 2d postWPP    524 pupae 3d postWPP    356 pupae 4d postWPP    441 adult male 01day    466 adult male 05day    535 adult male 30day    590 adult female 01day    1518 adult female 05day    2445 adult female 30day    2504 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (4377) embryo 02-04hr  (3637) embryo 04-06hr  (911) embryo 06-08hr  (754) embryo 08-10hr  (1165) embryo 10-12hr  (1077) embryo 12-14hr  (924) embryo 14-16hr  (1217) embryo 16-18hr  (1119) embryo 18-20hr  (723) embryo 20-22hr  (905) embryo 22-24hr  (1032) larva L1  (532) larva L2  (687) larva L3 12hr old  (589) larva L3 puffstage 1-2  (675) larva L3 puffstage 3-6  (1001) larva L3 puffstage 7-9  (1267) white prepupae new  (1420) white prepupae 12hr  (850) white prepupae 24hr  (726) pupae 2d postWPP  (524) pupae 3d postWPP  (356) pupae 4d postWPP  (441) adult male 01day  (466) adult male 05day  (535) adult male 30day  (590) adult female 01day  (1518) adult female 05day  (2445) adult female 30day  (2504) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (4377) embryo 02-04hr  (3637) embryo 04-06hr    911 embryo 06-08hr    754 embryo 08-10hr    1165 embryo 10-12hr    1077 embryo 12-14hr    924 embryo 14-16hr    1217 embryo 16-18hr    1119 embryo 18-20hr    723 embryo 20-22hr    905 embryo 22-24hr    1032 larva L1    532 larva L2    687 larva L3 12hr old    589 larva L3 puffstage 1-2    675 larva L3 puffstage 3-6    1001 larva L3 puffstage 7-9    1267 white prepupae new  1420 white prepupae 12hr    850 white prepupae 24hr    726 pupae 2d postWPP    524 pupae 3d postWPP    356 pupae 4d postWPP    441 adult male 01day    466 adult male 05day    535 adult male 30day    590 adult female 01day  (1518) adult female 05day  (2445) adult female 30day  (2504) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    4377 embryo 02-04hr    3637 embryo 04-06hr    911 embryo 06-08hr    754 embryo 08-10hr    1165 embryo 10-12hr    1077 embryo 12-14hr    924 embryo 14-16hr    1217 embryo 16-18hr    1119 embryo 18-20hr    723 embryo 20-22hr    905 embryo 22-24hr    1032 larva L1    532 larva L2    687 larva L3 12hr old    589 larva L3 puffstage 1-2    675 larva L3 puffstage 3-6    1001 larva L3 puffstage 7-9    1267 white prepupae new    1420 white prepupae 12hr    850 white prepupae 24hr    726 pupae 2d postWPP    524 pupae 3d postWPP    356 pupae 4d postWPP    441 adult male 01day    466 adult male 05day    535 adult male 30day    590 adult female 01day    1518 adult female 05day    2445 adult female 30day    2504 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    4377 embryo 02-04hr    3637 embryo 04-06hr    911 embryo 06-08hr    754 embryo 08-10hr    1165 embryo 10-12hr    1077 embryo 12-14hr    924 embryo 14-16hr    1217 embryo 16-18hr    1119 embryo 18-20hr    723 embryo 20-22hr    905 embryo 22-24hr    1032 larva L1    532 larva L2    687 larva L3 12hr old    589 larva L3 puffstage 1-2    675 larva L3 puffstage 3-6    1001 larva L3 puffstage 7-9    1267 white prepupae new    1420 white prepupae 12hr    850 white prepupae 24hr    726 pupae 2d postWPP    524 pupae 3d postWPP    356 pupae 4d postWPP    441 adult male 01day    466 adult male 05day    535 adult male 30day    590 adult female 01day    1518 adult female 05day    2445 adult female 30day    2504 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0029685 expression level Developmental Stage   Expression Level embryo 00-02hr    4377 embryo 02-04hr    3637 embryo 04-06hr    911 embryo 06-08hr    754 embryo 08-10hr    1165 embryo 10-12hr    1077 embryo 12-14hr    924 embryo 14-16hr    1217 embryo 16-18hr    1119 embryo 18-20hr    723 embryo 20-22hr    905 embryo 22-24hr    1032 larva L1    532 larva L2    687 larva L3 12hr old    589 larva L3 puffstage 1-2    675 larva L3 puffstage 3-6    1001 larva L3 puffstage 7-9    1267 white prepupae new    1420 white prepupae 12hr    850 white prepupae 24hr    726 pupae 2d postWPP    524 pupae 3d postWPP    356 pupae 4d postWPP    441 adult male 01day    466 adult male 05day    535 adult male 30day    590 adult female 01day    1518 adult female 05day    2445 adult female 30day    2504 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (4377) embryo 02-04hr  (3637) embryo 04-06hr  (911) embryo 06-08hr  (754) embryo 08-10hr  (1165) embryo 10-12hr  (1077) embryo 12-14hr  (924) embryo 14-16hr  (1217) embryo 16-18hr  (1119) embryo 18-20hr  (723) embryo 20-22hr  (905) embryo 22-24hr  (1032) larva L1  (532) larva L2  (687) larva L3 12hr old  (589) larva L3 puffstage 1-2  (675) larva L3 puffstage 3-6  (1001) larva L3 puffstage 7-9  (1267) white prepupae new  (1420) white prepupae 12hr  (850) white prepupae 24hr  (726) pupae 2d postWPP  (524) pupae 3d postWPP  (356) pupae 4d postWPP  (441) adult male 01day  (466) adult male 05day  (535) adult male 30day  (590) adult female 01day  (1518) adult female 05day  (2445) adult female 30day  (2504) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (4377) embryo 02-04hr  (3637) embryo 04-06hr    911 embryo 06-08hr    754 embryo 08-10hr    1165 embryo 10-12hr    1077 embryo 12-14hr    924 embryo 14-16hr    1217 embryo 16-18hr    1119 embryo 18-20hr    723 embryo 20-22hr    905 embryo 22-24hr    1032 larva L1    532 larva L2    687 larva L3 12hr old    589 larva L3 puffstage 1-2    675 larva L3 puffstage 3-6    1001 larva L3 puffstage 7-9    1267 white prepupae new  1420 white prepupae 12hr    850 white prepupae 24hr    726 pupae 2d postWPP    524 pupae 3d postWPP    356 pupae 4d postWPP    441 adult male 01day    466 adult male 05day    535 adult male 30day    590 adult female 01day  1518 adult female 05day  2445 adult female 30day  (2504) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    4377 embryo 02-04hr    3637 embryo 04-06hr    911 embryo 06-08hr    754 embryo 08-10hr    1165 embryo 10-12hr    1077 embryo 12-14hr    924 embryo 14-16hr    1217 embryo 16-18hr    1119 embryo 18-20hr    723 embryo 20-22hr    905 embryo 22-24hr    1032 larva L1    532 larva L2    687 larva L3 12hr old    589 larva L3 puffstage 1-2    675 larva L3 puffstage 3-6    1001 larva L3 puffstage 7-9    1267 white prepupae new    1420 white prepupae 12hr    850 white prepupae 24hr    726 pupae 2d postWPP    524 pupae 3d postWPP    356 pupae 4d postWPP    441 adult male 01day    466 adult male 05day    535 adult male 30day    590 adult female 01day    1518 adult female 05day    2445 adult female 30day    2504 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    4377 embryo 02-04hr    3637 embryo 04-06hr    911 embryo 06-08hr    754 embryo 08-10hr    1165 embryo 10-12hr    1077 embryo 12-14hr    924 embryo 14-16hr    1217 embryo 16-18hr    1119 embryo 18-20hr    723 embryo 20-22hr    905 embryo 22-24hr    1032 larva L1    532 larva L2    687 larva L3 12hr old    589 larva L3 puffstage 1-2    675 larva L3 puffstage 3-6    1001 larva L3 puffstage 7-9    1267 white prepupae new    1420 white prepupae 12hr    850 white prepupae 24hr    726 pupae 2d postWPP    524 pupae 3d postWPP    356 pupae 4d postWPP    441 adult male 01day    466 adult male 05day    535 adult male 30day    590 adult female 01day    1518 adult female 05day    2445 adult female 30day    2504 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0029685    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0029685 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, larval/adult midgut, larval hindgut, larval/adult Malpighian tubules, larval/adult salivary gland, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0029685 expression level Tissue   Expression Level Larval Central Nervous System    107.225 Larval Midgut    158.3 Larval Hindgut    179.5 Larval Malpighian Tubules    236.1 Larval Fat Body    95.1 Larval Salivary Gland    207.4 Larval Trachea    71.275 Larval Carcass    62.8 Adult Head    49.3 Adult Eye    28.35 Adult Brain    126.8 Adult Thoracic-Abdominal Ganglion    142.5 Adult Crop    67.8 Adult Midgut    103 Adult Hindgut    68.6 Adult Malpighian Tubules    138.7 Adult Fat Body    33 Adult Salivary Gland    104.4 Adult Heart    47.975 Adult VirginFemale Spermatheca    31.4 Adult InseminatedFemale Spermatheca    37.1 Adult Ovary    182.3 Adult Testis    9 Adult Male Accessory Gland    61.7 Adult Carcass    55.1 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    107.225 Larval Midgut    158.3 Larval Hindgut    179.5 Larval Malpighian Tubules    236.1 Larval Fat Body    95.1 Larval Salivary Gland    207.4 Larval Trachea    71.275 Larval Carcass    62.8 Adult Head    49.3 Adult Eye    28.35 Adult Brain    126.8 Adult Thoracic-Abdominal Ganglion    142.5 Adult Crop    67.8 Adult Midgut    103 Adult Hindgut    68.6 Adult Malpighian Tubules    138.7 Adult Fat Body    33 Adult Salivary Gland    104.4 Adult Heart    47.975 Adult VirginFemale Spermatheca    31.4 Adult InseminatedFemale Spermatheca    37.1 Adult Ovary    182.3 Adult Testis    9 Adult Male Accessory Gland    61.7 Adult Carcass    55.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    107.225 Larval Midgut    158.3 Larval Hindgut    179.5 Larval Malpighian Tubules    236.1 Larval Fat Body    95.1 Larval Salivary Gland    207.4 Larval Trachea    71.275 Larval Carcass    62.8 Adult Head    49.3 Adult Eye    28.35 Adult Brain    126.8 Adult Thoracic-Abdominal Ganglion    142.5 Adult Crop    67.8 Adult Midgut    103 Adult Hindgut    68.6 Adult Malpighian Tubules    138.7 Adult Fat Body    33 Adult Salivary Gland    104.4 Adult Heart    47.975 Adult VirginFemale Spermatheca    31.4 Adult InseminatedFemale Spermatheca    37.1 Adult Ovary    182.3 Adult Testis    9 Adult Male Accessory Gland    61.7 Adult Carcass    55.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    107.225 Larval Midgut    158.3 Larval Hindgut    179.5 Larval Malpighian Tubules    236.1 Larval Fat Body    95.1 Larval Salivary Gland    207.4 Larval Trachea    71.275 Larval Carcass    62.8 Adult Head    49.3 Adult Eye    28.35 Adult Brain    126.8 Adult Thoracic-Abdominal Ganglion    142.5 Adult Crop    67.8 Adult Midgut    103 Adult Hindgut    68.6 Adult Malpighian Tubules    138.7 Adult Fat Body    33 Adult Salivary Gland    104.4 Adult Heart    47.975 Adult VirginFemale Spermatheca    31.4 Adult InseminatedFemale Spermatheca    37.1 Adult Ovary    182.3 Adult Testis    9 Adult Male Accessory Gland    61.7 Adult Carcass    55.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0029685 expression level Tissue   Expression Level Larval Central Nervous System    107.225 Larval Midgut    158.3 Larval Hindgut    179.5 Larval Malpighian Tubules    236.1 Larval Fat Body    95.1 Larval Salivary Gland    207.4 Larval Trachea    71.275 Larval Carcass    62.8 Adult Head    49.3 Adult Eye    28.35 Adult Brain    126.8 Adult Thoracic-Abdominal Ganglion    142.5 Adult Crop    67.8 Adult Midgut    103 Adult Hindgut    68.6 Adult Malpighian Tubules    138.7 Adult Fat Body    33 Adult Salivary Gland    104.4 Adult Heart    47.975 Adult VirginFemale Spermatheca    31.4 Adult InseminatedFemale Spermatheca    37.1 Adult Ovary    182.3 Adult Testis    9 Adult Male Accessory Gland    61.7 Adult Carcass    55.1 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    107.225 Larval Midgut    158.3 Larval Hindgut    179.5 Larval Malpighian Tubules    236.1 Larval Fat Body    95.1 Larval Salivary Gland    207.4 Larval Trachea    71.275 Larval Carcass    62.8 Adult Head    49.3 Adult Eye    28.35 Adult Brain    126.8 Adult Thoracic-Abdominal Ganglion    142.5 Adult Crop    67.8 Adult Midgut    103 Adult Hindgut    68.6 Adult Malpighian Tubules    138.7 Adult Fat Body    33 Adult Salivary Gland    104.4 Adult Heart    47.975 Adult VirginFemale Spermatheca    31.4 Adult InseminatedFemale Spermatheca    37.1 Adult Ovary    182.3 Adult Testis    9 Adult Male Accessory Gland    61.7 Adult Carcass    55.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    107.225 Larval Midgut    158.3 Larval Hindgut    179.5 Larval Malpighian Tubules    236.1 Larval Fat Body    95.1 Larval Salivary Gland    207.4 Larval Trachea    71.275 Larval Carcass    62.8 Adult Head    49.3 Adult Eye    28.35 Adult Brain    126.8 Adult Thoracic-Abdominal Ganglion    142.5 Adult Crop    67.8 Adult Midgut    103 Adult Hindgut    68.6 Adult Malpighian Tubules    138.7 Adult Fat Body    33 Adult Salivary Gland    104.4 Adult Heart    47.975 Adult VirginFemale Spermatheca    31.4 Adult InseminatedFemale Spermatheca    37.1 Adult Ovary    182.3 Adult Testis    9 Adult Male Accessory Gland    61.7 Adult Carcass    55.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    107.225 Larval Midgut    158.3 Larval Hindgut    179.5 Larval Malpighian Tubules    236.1 Larval Fat Body    95.1 Larval Salivary Gland    207.4 Larval Trachea    71.275 Larval Carcass    62.8 Adult Head    49.3 Adult Eye    28.35 Adult Brain    126.8 Adult Thoracic-Abdominal Ganglion    142.5 Adult Crop    67.8 Adult Midgut    103 Adult Hindgut    68.6 Adult Malpighian Tubules    138.7 Adult Fat Body    33 Adult Salivary Gland    104.4 Adult Heart    47.975 Adult VirginFemale Spermatheca    31.4 Adult InseminatedFemale Spermatheca    37.1 Adult Ovary    182.3 Adult Testis    9 Adult Male Accessory Gland    61.7 Adult Carcass    55.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    49.3   NA  Eye    28.35   NA  Brain    126.8   107.225  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    142.5   NA  Crop    67.8   158.3  Midgut    103   179.5  Hindgut    68.6   236.1  Malpighian Tubules    138.7   95.1  Fat Body    33   207.4  Salivary Gland    104.4   NA  Heart    47.975   71.275  Trachea    NA   NA  VirginFemale Spermatheca    31.4   NA  InseminatedFemale Spermatheca    37.1   NA  Ovary    182.3   NA  Testis    9   NA  Male Accessory Gland    61.7   62.8  Carcass    55.1 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_13
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0029685 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG2938-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG2938 Stages(s) 1-3 Stages(s) 4-6
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG2938GD3223 Other Phenotypes Allele body color defective, with Scer\GAL4pnr-MD237 CG2938GD3223 visible, with Scer\GAL4pnr-MD237 CG2938GD3223 Phenotype manifest in Allele chaeta, with Scer\GAL4pnr-MD237 CG2938GD3223 mesothoracic tergum, with Scer\GAL4pnr-MD237 CG2938GD3223
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of CG2938 Class Mutagen Stocks Known lesion CG2938f05287 piggyBac transposase 1 -- CG2938G17228 P-element activity 1 -- CG2938GG01123 0 --
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG2938 Class Mutagen Stocks Known lesion CG2938GD3223 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD3223} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{WH}CG2938f05287 NA insertion of mobile activating element P{EP}CG2938G17228 NA P{Mae-UAS.6.11}CG2938GG01123 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
lateral inhibition inferred from mutant phenotype (Mummery-Widmer et al., 2009)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG2938 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 57865 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0029685 DroID - A comprehensive database of gene and protein interactions. • FBgn0029685 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31347
Orthologs
Genome-wide drosophilid orthologs	Dana\GF21094 Dere\GG18568 Dgri\GH17907 Dmoj\GI16046 Dper\GL14546 Dpse\GA15532 Dsec\GM12710 Dsim\GD16317 Dvir\GJ15558 Dwil\GK10363 Dyak\GE16879
Curated drosophilid orthologs	Dpse\GA15532
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL004545-PA Aedes aegypti (mosquito) AGAP001402-PA Anopheles gambiae (mosquito) XP_395026.2 Apis mellifera (honey bee) 66940 Branchiostoma floridae (lancelet) BGIBMGA011941-PA Bombyx mori (silk worm) ENSBTAP00000012005 Bos taurus (bovine) ENSCAFP00000003077 Canis familiaris (dog) ENSCINP00000005714 Ciona intestinalis (sea squirt) cn14151 Cryptococcus neoformans (yeast-like fungus) CPIJ003344 Culex pipens (mosquito) ENSCSAVP00000013106 Ciona savignyi (sedentary tunicate) 167181 Capitella spl (polychaete worm) 48914 Daphnia pulex (daphnia) ENSDARP00000049841 Danio rerio (zebra fish) ENSECAP00000009580 Equus caballus (horse) ENSGACP00000008712 Gymnopilus aculeatus (mushroom) ENSGALP00000015703 Gallus gallus (chicken) 89851 Hypsipyla robusta (cedar shoot borer) ENSP00000297273 Homo sapiens (human) ISCW021640-PA Ixodes scapularis (deer tick) 180023 Lottia gigantea (owl limpet) ENSMMUP00000021525 Macaca mulatta (rhesus monkey) ENSMUSP00000015333 Mus musculus (house mouse) 238466 Nematostella vectensis (starlet anemone) ENSOANP00000006768 Ornithorynchus anatinus (platypus) ENSORLP00000005462 Oryzias latipes (japanese killifish) PHUM007516-PA Pediculus humanus (human body louse) ENSPPYP00000019960 Pongo pygmaeus (orangutan) ENSPTRP00000033208 Pan troglodytes (chimpanzee) Smp_157560 Schistosoma mansoni (trematode parasite) XP_782149.2 Strongylocentrotus purpuratus (purple sea urchin) XP_001807591.1 Tribolium castaneum (red flour beetle) ENSTRUP00000040548 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000043823 Xenopus tropicalis (frog) YALI0C00187g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB13070 LH21076 ISCW021640 FBgn0234369 FBgn0212378 FBgn0202751 FBgn0187940 FBgn0167646 JGI_V11_48914 FBgn0075549 FBgn0152151 FBgn0138795 FBgn0125375 FBgn0110779 FBgn0098099 CPIJ003344 BGIBMGA011941 GB15379 AGAP001402 AAEL004545 PHUM205440 GLEAN_02627
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	33586 w* P{EP}CG2938G17228
Harvard	- PBac{WH}CG2938f05287
VDRC	v7035 w1118; P{GD3223}v7035/CyO
Genomic Clones ( 2 )
	BACR19D19 BACR21M21 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 59 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD22456 SD03002
Other clones	DPiM_LD22456
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LD32296 LD34184 RE16037 RE19629 RE22490 RE32082 RE39772 RE39995 RE46173 RE47370 RE48792 RE49637 RE50692 RE52544 RE54654 RE55574 RE56394 RE64820 RE67077 RE67084 RE67089 RE67624 RE70396 RE70535 SD04981 SD05863 SD07174 SD14462
Other clones	652 1538 12446 38625 73856 73968 83803 214313.51 214505.52 CK01.49D.E4 CK01.143A.H10 CK01.145C.G7 CK01.146D.B10 Dmel_neb_013502_0693_3259 EK041350 EK047507 EK113534 EK116261 EK120637 EK121832 EK122412 EK151451 EK203255 EK203349 EK218550 EP15939 EP18427 UUGC0747
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0029685 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31347
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_130729 RefSeq (Proteins) • NP_570085 DDBJ / EMBL / GenBank • AA817251 AAF45907 AAL39645 AAM12264 AI531749 AW942641 AW944279 AY069500 AY095533 CZ487917 Entrez Gene - A searchable database of RefSeq genes. • 31347 UniProtKB/TrEMBL • Q8T3H4 Q9W4P0
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Cas1p-like (IPR012419)
Linkouts
	BioGRID - A database of protein and genetic interactions • 57865 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0029685 DroID - A comprehensive database of gene and protein interactions. • FBgn0029685 DRSC - Results from RNAi screens. • FBgn0029685 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0029685 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG2938-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0029685 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31347 InParanoid A subset of ortholog calls from InParanoid. • AAEL004545-PA Aedes aegypti (mosquito) AGAP001402-PA Anopheles gambiae (mosquito) XP_395026.2 Apis mellifera (honey bee) 66940 Branchiostoma floridae (lancelet) BGIBMGA011941-PA Bombyx mori (silk worm) ENSBTAP00000012005 Bos taurus (bovine) ENSCAFP00000003077 Canis familiaris (dog) ENSCINP00000005714 Ciona intestinalis (sea squirt) cn14151 Cryptococcus neoformans (yeast-like fungus) CPIJ003344 Culex pipens (mosquito) ENSCSAVP00000013106 Ciona savignyi (sedentary tunicate) 167181 Capitella spl (polychaete worm) 48914 Daphnia pulex (daphnia) ENSDARP00000049841 Danio rerio (zebra fish) ENSECAP00000009580 Equus caballus (horse) ENSGACP00000008712 Gymnopilus aculeatus (mushroom) ENSGALP00000015703 Gallus gallus (chicken) 89851 Hypsipyla robusta (cedar shoot borer) ENSP00000297273 Homo sapiens (human) ISCW021640-PA Ixodes scapularis (deer tick) 180023 Lottia gigantea (owl limpet) ENSMMUP00000021525 Macaca mulatta (rhesus monkey) ENSMUSP00000015333 Mus musculus (house mouse) 238466 Nematostella vectensis (starlet anemone) ENSOANP00000006768 Ornithorynchus anatinus (platypus) ENSORLP00000005462 Oryzias latipes (japanese killifish) PHUM007516-PA Pediculus humanus (human body louse) ENSPPYP00000019960 Pongo pygmaeus (orangutan) ENSPTRP00000033208 Pan troglodytes (chimpanzee) Smp_157560 Schistosoma mansoni (trematode parasite) XP_782149.2 Strongylocentrotus purpuratus (purple sea urchin) XP_001807591.1 Tribolium castaneum (red flour beetle) ENSTRUP00000040548 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000043823 Xenopus tropicalis (frog) YALI0C00187g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31347 modMine - Data generated by the modENCODE project. • FBgn0029685 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB13070 LH21076 ISCW021640 FBgn0234369 FBgn0212378 FBgn0202751 FBgn0187940 FBgn0167646 JGI_V11_48914 FBgn0075549 FBgn0152151 FBgn0138795 FBgn0125375 FBgn0110779 FBgn0098099 CPIJ003344 BGIBMGA011941 GB15379 AGAP001402 AAEL004545 PHUM205440 GLEAN_02627
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG2938 (Gilfillan et al., 2006, Svensson et al., 2007)
Name Synonym
Secondary FlyBase IDs
References ( 12 )
Research paper	Svensson et al., 2007, Dev. Genes Evol. 217(9): 639--650 Organization and regulation of sex-specific thioredoxin encoding genes in the genus Drosophila. [FBrf0201263] Gilfillan et al., 2006, Genes Dev. 20(7): 858--870 Chromosome-wide gene-specific targeting of the Drosophila dosage compensation complex. [FBrf0190543]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Bellen, 2010.12.22, GE836.xml GE836.xml [FBrf0212684] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
Computer file	Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. Genomic mapping of Exelixis insertion collection. [FBrf0184340] Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]