• Home
• Tools
  • Tools Overview
  • Query Tools

    
    • QuickSearch
    • QueryBuilder
    • TermLink
    • CytoSearch
    • RNA-Seq Search
    • Interactions Browser
    • ImageBrowse
    • Find A Person
    • Google™ FlyBase
  • Genomic/Map Tools

    
    • BLAST
    • GBrowse
    • GBrowse 2 Beta
    • CytoSearch
    • Feature Mapper
    • Aberrations Maps
    • Chromosome Maps
    • Coordinates Converter
  • Retrieve/Convert

    
    • Batch Download
    • Coordinates Converter
    • ID Converter
  • Data Submission

    
    • Fast-Track Your Paper
    • Submit Personal Comm
    • Add A New Person
    • Update Person Info
  • People

    
    • Find A Person
    • Add A New Person
    • Update Person Info
• Files
  • Files Overview
  • Current release
  • Archived releases
  • Map Conversion
  • FTP site:
  • Releases (FTP)
  • Genomes (FTP)
• Species
  • Phylogeny
  • Sequenced Species
  • Synteny Table
  • Color Illustrations
  • Abbreviations
• Documents
  • About FlyBase
  • Reference Manual:
  • Sections
  • Contents
  • Nomenclature
  • Release Notes
• Resources
  • All Resources
  • Model Organisms
  • Stock Collections
  • Vectors & Constructs
  • Other links:
  • BDGP
  • DGRC
  • DIS by issue
  • FlyExpress
  • Interactive Fly
  • modENCODE
  • Textpresso for Fly
• News
  • News
  • FlyBase Forum
  • FlyBase Positions
  • Meetings
  • Courses
  • Fly Board
  • White papers
  • Funding
  • bionet.dros
• Help
  • Google™ FlyBase
  • Site Map
  • FAQs
  • FlyBase Guides
  • Video Tutorials
  • Report help
  • New to Flies
  • Pers. comm.
  • Author guidelines
  • Contact FlyBase
• Archives
  • Prior Release
  • Other Archives
  • Coordinate Converter

Gene Dmel\RpL35

General Information
Symbol	Dmel\RpL35	Species	D. melanogaster
Name	Ribosomal protein L35	Annotation symbol	CG4111
Feature type	protein_coding_gene	FlyBase ID	FBgn0029785
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	5A11-5A11	Sequence location	X:5,566,513..5,567,576 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Ribosomal protein L35 is referred to in FlyBase by the symbol Dmel\RpL35 (CG4111, FBgn0029785). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process: mitotic spindle elongation; mitotic spindle organization; centrosome duplication. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Ribosomal protein L29; Ribosomal protein L29, conserved site. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, during early larval stages. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Gene sequence location is X:5566513..5567576.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 5A11-5A11   Limits computationally determined from genome sequence between P{EP}CG3249EP1400 and P{EP}Tre1EP496
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\RpL35 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.50 Gene model reviewed during 5.39 Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) RpL35-RA FBtr0070801  NM_167043   606   123 RpL35-RB FBtr0070800  NM_132015   507   123
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein RpL35-PA   FBpp0070767   14.4   123   11.82     NP_727016   AAF46058 RpL35-PB   FBpp0070766   14.4   123   11.82     NP_572243   AAN09148
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein L29, conserved site (IPR018254) Ribosomal protein L29 (IPR001854)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA393020   AA433207   AA567282   AA694844   AA695202   AA803170   AA803289   AA803312   AA803350   AA803713   AA803716   AA949656   AA978920   AE014298 AAF46058   AE014298 AAN09148   AF083287   AI062445   AI063170   AI064454   AI134083   AI238117   AI239101   AI259413   AI260151   AI260439   AI260665   AI292980   AI297199   AI386690   AI386691   AI403169   AI405077   AI455109   AI533238   AI533453   AI533629   AI541742   AI542415   AI542515   AY118364 AAM48393   AY231641   AY441121   AY441123   BG635674   BG635889   BG636027   BG636549   BG639669   BG640077   BG640419   BG640746   BG641418   BI141982   BI142104   BI142127   BI163346   BI163574   BI165394   BI165599   BI165808   BI166842   BI167762   BI168161   BI168479   BI168702   BI171366   BI172965   BI173424   BI212817   BI212964   BI214206   BI214364   BI227458   BI227639   BI230400   BI231640   BI232496   BI232846   BI236411   BI241300   BI241613   BI241756   BI242002   BI242597   BI351812   BI351971   BI352402   BI352643   BI352647   BI352769   BI352882   BI353253   BI353281   BI353507   BI353641   BI354550   BI354562   BI355136   BI355416   BI355728   BI357080   BI357407   BI358470   BI358500   BI361422   BI362628   BI364765   BI364793   BI367394   BI370443   BI374029   BI482097   BI483243   BI484614   BI485288   BI486070   BI486100   BI486230   BI486526   BI563633   BI564741   BI565010   BI565707   BI565918   BI568521   BI569461   BI569937   BI569978   BI571191   BI571406   BI571841   BI572107   BI572118   BI572125   BI572372   BI572518   BI573165   BI574524   BI574934   BI575882   BI576345   BI576504   BI576567   BI578153   BI578581   BI579479   BI579901   BI581295   BI581826   BI582841   BI583012   BI583297   BI584133   BI585480   BI585935   BI586488   BI587052   BI587718   BI588547   BI588830   BI590026   BI590992   BI591203   BI591206   BI591740   BI592446   BI593073   BI604920   BI605546   BI606546   BI607193   BI608144   BI608161   BI608513   BI609261   BI609477   BI609505   BI610233   BI610908   BI611321   BI611358   BI611385   BI612229   BI612784   BI612907   BI612967   BI613032   BI613090   BI614016   BI614155   BI614462   BI614685   BI615720   BI615969   BI616989   BI617062   BI617120   BI617509   BI618136   BI619281   BI620198   BI620923   BI621669   BI623819   BI625449   BI625586   BI628724   BI628905   BI629604   BI630243   BI631006   BI631489   BI631663   BI632126   BI632712   BI632921   BI633577   BI633593   BI633609   BI633911   BI634312   BI634474   BI634715   BI634901   BI634920   BI634977   BI635291   BI636177   BI636820   BI636921   BI637459   BI638290   BI638586   BI638810   BI639523   BI640104   BI640327   BI640355   BI640897   BI641306   BI641853   BP542591   BP543971   BP543972   BP544403   BP544404   BP544437   BP544438   BP546637   BP546982   BP547105   BP547520   BP548510   BP550793   BP550794   BP551645   BP551646   BP551800   BP551801   BP553762   BP553763   BP555685   BP555686   BP559059   BP559060   BP559478   BP559479   BP560143   BQ103150   BQ103338   BT044105   BT088994   BX011736   BX015512   BX020462   BX025848   CA803822   CA804724   CA804839   CK131734   CK132047   CK659015   CK659021   CK659368   CK661859   CK661888   CK661997   CO153649   CO153714   CO155101   CO155454   CO155458   CO155805   CO156819   CO156858   CO180777   CO181111   CO181558   CO181688   CO181739   CO181826   CO182903   CO183464   CO183618   CO183849   CO191257   CO191260   CO192970   CO193614   CO194152   CO195680   CO265424   CO269302   CO271205   CO273416   CO273856   CO284566   CO299004   CO303691   CO306942   CO310374   CO311518   CO315047   CO335834   CO335940   CO336511   CO336530   CO336782   CO336791   CO336931   CO337992   CO338193   DQ440066   EC063950   EC071956   EC072938   EC076308   EC076923   EC077330   EC084252   EC208623   EC227608   EC230447   EC232549   EC237695   EC247994   EC261379   EC262348   EC262376   EC262926   EC263087   EC263688   EC263833   EC263878   EC264565   EC265840   EC266006   EC266177   EC266289   EC266579   EC266929   EC266958   EC267103   EC267498   EC267535   EC267653   EC267738   EC267849   EL876942   EL877122   EL877123   EV575173   EV575436   EV576285   EV576416   EV576617   EV576998   EV577823   EV577928   EV578800   EV578970   EV580855   EV581566   EV582467   EV584506   EV585529   EV585734   EV587502   EV589218   EV589858   EV591364   EV591929   EV592605   EV593618   EV594290   EV594310   EV594473   EV594481   EV596881   EV597940   EV598260   EV598651   EV599043   EV600092   EV600724   GH747997   GH752492   GH770253   GH771516   GH773480   GH773978   GH776860   GH784535   GH787940   GH793303   GH807040   GH807592   GH811137   GH814294   GH814956   GH814963   GH815458   GH820299   GH821710   GH825811   GH832679   GH833470   GH842900   GH844052   GH852129   GH855307   GH864265   GH872488   GH880896   GH883500   GH884103   GH887272   GH909617   GH914809   GH920355   GH926277   GH927380   GH929971   GH939159   GH939786
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9W499 Q8MT59
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism | ubiquitous   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
ribosome inferred from direct assay (Alonso and Santaren, 2006)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    592 central nervous system, larvae L3    477 central nervous system, pupae P8    239 head, virgin 1-day female    292 head, virgin 4-day female    495 head, virgin 20-day female    445 head, mated 1-day female    303 head, mated 4-day female    390 head, mated 20-day female    386 head, mated 1-day male    274 head, mated 4-day male    307 head, mated 20-day male    393 salivary gland, larvae L3 wandering    650 salivary gland, white prepupae    800 digestive system, larvae L3 wandering    428 digestive system, 1-day adult    385 digestive system, 4-day adult    394 digestive system, 20-day adult    346 fat body, larvae L3 wandering    347 fat body, white prepupae    285 fat body, pupae P8    551 carcass, larvae L3 wandering    554 carcass, 1-day adult    273 carcass, 4-day adult    366 carcass, 20-day adult    450 ovary, virgin 4-day female    514 ovary, mated 4-day female    558 testis, mated 4-day male    160 accessory gland, mated 4-day male    410 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (592) central nervous system, larvae L3  (477) central nervous system, pupae P8  (239) head, virgin 1-day female  (292) head, virgin 4-day female  (495) head, virgin 20-day female  (445) head, mated 1-day female  (303) head, mated 4-day female  (390) head, mated 20-day female  (386) head, mated 1-day male  (274) head, mated 4-day male  (307) head, mated 20-day male  (393) salivary gland, larvae L3 wandering  (650) salivary gland, white prepupae  (800) digestive system, larvae L3 wandering  (428) digestive system, 1-day adult  (385) digestive system, 4-day adult  (394) digestive system, 20-day adult  (346) fat body, larvae L3 wandering  (347) fat body, white prepupae  (285) fat body, pupae P8  (551) carcass, larvae L3 wandering  (554) carcass, 1-day adult  (273) carcass, 4-day adult  (366) carcass, 20-day adult  (450) ovary, virgin 4-day female  (514) ovary, mated 4-day female  (558) testis, mated 4-day male  (160) accessory gland, mated 4-day male  (410) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (592) central nervous system, larvae L3  (477) central nervous system, pupae P8  (239) head, virgin 1-day female  (292) head, virgin 4-day female  (495) head, virgin 20-day female  (445) head, mated 1-day female  (303) head, mated 4-day female  (390) head, mated 20-day female  (386) head, mated 1-day male  (274) head, mated 4-day male  (307) head, mated 20-day male  (393) salivary gland, larvae L3 wandering  (650) salivary gland, white prepupae  (800) digestive system, larvae L3 wandering  (428) digestive system, 1-day adult  (385) digestive system, 4-day adult  (394) digestive system, 20-day adult  (346) fat body, larvae L3 wandering  (347) fat body, white prepupae  (285) fat body, pupae P8  (551) carcass, larvae L3 wandering  (554) carcass, 1-day adult  (273) carcass, 4-day adult  (366) carcass, 20-day adult  (450) ovary, virgin 4-day female  (514) ovary, mated 4-day female  (558) testis, mated 4-day male  (160) accessory gland, mated 4-day male  (410) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    592 central nervous system, larvae L3    477 central nervous system, pupae P8    239 head, virgin 1-day female    292 head, virgin 4-day female    495 head, virgin 20-day female    445 head, mated 1-day female    303 head, mated 4-day female    390 head, mated 20-day female    386 head, mated 1-day male    274 head, mated 4-day male    307 head, mated 20-day male    393 salivary gland, larvae L3 wandering    650 salivary gland, white prepupae    800 digestive system, larvae L3 wandering    428 digestive system, 1-day adult    385 digestive system, 4-day adult    394 digestive system, 20-day adult    346 fat body, larvae L3 wandering    347 fat body, white prepupae    285 fat body, pupae P8    551 carcass, larvae L3 wandering    554 carcass, 1-day adult    273 carcass, 4-day adult    366 carcass, 20-day adult    450 ovary, virgin 4-day female    514 ovary, mated 4-day female    558 testis, mated 4-day male    160 accessory gland, mated 4-day male    410 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    592 central nervous system, larvae L3    477 central nervous system, pupae P8    239 head, virgin 1-day female    292 head, virgin 4-day female    495 head, virgin 20-day female    445 head, mated 1-day female    303 head, mated 4-day female    390 head, mated 20-day female    386 head, mated 1-day male    274 head, mated 4-day male    307 head, mated 20-day male    393 salivary gland, larvae L3 wandering    650 salivary gland, white prepupae    800 digestive system, larvae L3 wandering    428 digestive system, 1-day adult    385 digestive system, 4-day adult    394 digestive system, 20-day adult    346 fat body, larvae L3 wandering    347 fat body, white prepupae    285 fat body, pupae P8    551 carcass, larvae L3 wandering    554 carcass, 1-day adult    273 carcass, 4-day adult    366 carcass, 20-day adult    450 ovary, virgin 4-day female    514 ovary, mated 4-day female    558 testis, mated 4-day male    160 accessory gland, mated 4-day male    410 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (592) central nervous system, larvae L3  (477) central nervous system, pupae P8  (239) head, virgin 1-day female  (292) head, virgin 4-day female  (495) head, virgin 20-day female  (445) head, mated 1-day female  (303) head, mated 4-day female  (390) head, mated 20-day female  (386) head, mated 1-day male  (274) head, mated 4-day male  (307) head, mated 20-day male  (393) salivary gland, larvae L3 wandering  (650) salivary gland, white prepupae  (800) digestive system, larvae L3 wandering  (428) digestive system, 1-day adult  (385) digestive system, 4-day adult  (394) digestive system, 20-day adult  (346) fat body, larvae L3 wandering  (347) fat body, white prepupae  (285) fat body, pupae P8  (551) carcass, larvae L3 wandering  (554) carcass, 1-day adult  (273) carcass, 4-day adult  (366) carcass, 20-day adult  (450) ovary, virgin 4-day female  (514) ovary, mated 4-day female  (558) testis, mated 4-day male  (160) accessory gland, mated 4-day male  (410) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (592) central nervous system, larvae L3  (477) central nervous system, pupae P8  (239) head, virgin 1-day female  (292) head, virgin 4-day female  (495) head, virgin 20-day female  (445) head, mated 1-day female  (303) head, mated 4-day female  (390) head, mated 20-day female  (386) head, mated 1-day male  (274) head, mated 4-day male  (307) head, mated 20-day male  (393) salivary gland, larvae L3 wandering  (650) salivary gland, white prepupae  (800) digestive system, larvae L3 wandering  (428) digestive system, 1-day adult  (385) digestive system, 4-day adult  (394) digestive system, 20-day adult  (346) fat body, larvae L3 wandering  (347) fat body, white prepupae  (285) fat body, pupae P8  (551) carcass, larvae L3 wandering  (554) carcass, 1-day adult  (273) carcass, 4-day adult  (366) carcass, 20-day adult  (450) ovary, virgin 4-day female  (514) ovary, mated 4-day female  (558) testis, mated 4-day male  (160) accessory gland, mated 4-day male  (410) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    592 central nervous system, larvae L3    477 central nervous system, pupae P8    239 head, virgin 1-day female    292 head, virgin 4-day female    495 head, virgin 20-day female    445 head, mated 1-day female    303 head, mated 4-day female    390 head, mated 20-day female    386 head, mated 1-day male    274 head, mated 4-day male    307 head, mated 20-day male    393 salivary gland, larvae L3 wandering    650 salivary gland, white prepupae    800 digestive system, larvae L3 wandering    428 digestive system, 1-day adult    385 digestive system, 4-day adult    394 digestive system, 20-day adult    346 fat body, larvae L3 wandering    347 fat body, white prepupae    285 fat body, pupae P8    551 carcass, larvae L3 wandering    554 carcass, 1-day adult    273 carcass, 4-day adult    366 carcass, 20-day adult    450 ovary, virgin 4-day female    514 ovary, mated 4-day female    558 testis, mated 4-day male    160 accessory gland, mated 4-day male    410 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, during early larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    980 embryo 02-04hr    1783 embryo 04-06hr    1850 embryo 06-08hr    1814 embryo 08-10hr    1933 embryo 10-12hr    1918 embryo 12-14hr    1684 embryo 14-16hr    994 embryo 16-18hr    1138 embryo 18-20hr    1572 embryo 20-22hr    1873 embryo 22-24hr    1894 larva L1    1374 larva L2    1789 larva L3 12hr old    1287 larva L3 puffstage 1-2    1206 larva L3 puffstage 3-6    1123 larva L3 puffstage 7-9    1305 white prepupae new    1319 white prepupae 12hr    1069 white prepupae 24hr    1108 pupae 2d postWPP    1050 pupae 3d postWPP    758 pupae 4d postWPP    448 adult male 01day    620 adult male 05day    543 adult male 30day    472 adult female 01day    724 adult female 05day    1207 adult female 30day    1206 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (980) embryo 02-04hr  (1783) embryo 04-06hr  (1850) embryo 06-08hr  (1814) embryo 08-10hr  (1933) embryo 10-12hr  (1918) embryo 12-14hr  (1684) embryo 14-16hr  (994) embryo 16-18hr  (1138) embryo 18-20hr  (1572) embryo 20-22hr  (1873) embryo 22-24hr  (1894) larva L1  (1374) larva L2  (1789) larva L3 12hr old  (1287) larva L3 puffstage 1-2  (1206) larva L3 puffstage 3-6  (1123) larva L3 puffstage 7-9  (1305) white prepupae new  (1319) white prepupae 12hr  (1069) white prepupae 24hr  (1108) pupae 2d postWPP  (1050) pupae 3d postWPP  (758) pupae 4d postWPP  (448) adult male 01day  (620) adult male 05day  (543) adult male 30day  (472) adult female 01day  (724) adult female 05day  (1207) adult female 30day  (1206) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (980) embryo 02-04hr  (1783) embryo 04-06hr  (1850) embryo 06-08hr  (1814) embryo 08-10hr  (1933) embryo 10-12hr  (1918) embryo 12-14hr  (1684) embryo 14-16hr  (994) embryo 16-18hr  (1138) embryo 18-20hr  (1572) embryo 20-22hr  (1873) embryo 22-24hr  (1894) larva L1  (1374) larva L2  (1789) larva L3 12hr old  (1287) larva L3 puffstage 1-2  (1206) larva L3 puffstage 3-6  (1123) larva L3 puffstage 7-9  (1305) white prepupae new  (1319) white prepupae 12hr  (1069) white prepupae 24hr  (1108) pupae 2d postWPP  (1050) pupae 3d postWPP  (758) pupae 4d postWPP  (448) adult male 01day  (620) adult male 05day  (543) adult male 30day  (472) adult female 01day  (724) adult female 05day  (1207) adult female 30day  (1206) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    980 embryo 02-04hr    1783 embryo 04-06hr    1850 embryo 06-08hr    1814 embryo 08-10hr    1933 embryo 10-12hr    1918 embryo 12-14hr    1684 embryo 14-16hr    994 embryo 16-18hr    1138 embryo 18-20hr    1572 embryo 20-22hr    1873 embryo 22-24hr    1894 larva L1    1374 larva L2    1789 larva L3 12hr old    1287 larva L3 puffstage 1-2    1206 larva L3 puffstage 3-6    1123 larva L3 puffstage 7-9    1305 white prepupae new    1319 white prepupae 12hr    1069 white prepupae 24hr    1108 pupae 2d postWPP    1050 pupae 3d postWPP    758 pupae 4d postWPP    448 adult male 01day    620 adult male 05day    543 adult male 30day    472 adult female 01day    724 adult female 05day    1207 adult female 30day    1206 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    980 embryo 02-04hr    1783 embryo 04-06hr    1850 embryo 06-08hr    1814 embryo 08-10hr    1933 embryo 10-12hr    1918 embryo 12-14hr    1684 embryo 14-16hr    994 embryo 16-18hr    1138 embryo 18-20hr    1572 embryo 20-22hr    1873 embryo 22-24hr    1894 larva L1    1374 larva L2    1789 larva L3 12hr old    1287 larva L3 puffstage 1-2    1206 larva L3 puffstage 3-6    1123 larva L3 puffstage 7-9    1305 white prepupae new    1319 white prepupae 12hr    1069 white prepupae 24hr    1108 pupae 2d postWPP    1050 pupae 3d postWPP    758 pupae 4d postWPP    448 adult male 01day    620 adult male 05day    543 adult male 30day    472 adult female 01day    724 adult female 05day    1207 adult female 30day    1206 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (980) embryo 02-04hr  (1783) embryo 04-06hr  (1850) embryo 06-08hr  (1814) embryo 08-10hr  (1933) embryo 10-12hr  (1918) embryo 12-14hr  (1684) embryo 14-16hr  (994) embryo 16-18hr  (1138) embryo 18-20hr  (1572) embryo 20-22hr  (1873) embryo 22-24hr  (1894) larva L1  (1374) larva L2  (1789) larva L3 12hr old  (1287) larva L3 puffstage 1-2  (1206) larva L3 puffstage 3-6  (1123) larva L3 puffstage 7-9  (1305) white prepupae new  (1319) white prepupae 12hr  (1069) white prepupae 24hr  (1108) pupae 2d postWPP  (1050) pupae 3d postWPP  (758) pupae 4d postWPP  (448) adult male 01day  (620) adult male 05day  (543) adult male 30day  (472) adult female 01day  (724) adult female 05day  (1207) adult female 30day  (1206) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (980) embryo 02-04hr  (1783) embryo 04-06hr  (1850) embryo 06-08hr  (1814) embryo 08-10hr  (1933) embryo 10-12hr  (1918) embryo 12-14hr  (1684) embryo 14-16hr  (994) embryo 16-18hr  (1138) embryo 18-20hr  (1572) embryo 20-22hr  (1873) embryo 22-24hr  (1894) larva L1  (1374) larva L2  (1789) larva L3 12hr old  (1287) larva L3 puffstage 1-2  (1206) larva L3 puffstage 3-6  (1123) larva L3 puffstage 7-9  (1305) white prepupae new  (1319) white prepupae 12hr  (1069) white prepupae 24hr  (1108) pupae 2d postWPP  (1050) pupae 3d postWPP  (758) pupae 4d postWPP  (448) adult male 01day  (620) adult male 05day  (543) adult male 30day  (472) adult female 01day  (724) adult female 05day  (1207) adult female 30day  (1206) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    980 embryo 02-04hr    1783 embryo 04-06hr    1850 embryo 06-08hr    1814 embryo 08-10hr    1933 embryo 10-12hr    1918 embryo 12-14hr    1684 embryo 14-16hr    994 embryo 16-18hr    1138 embryo 18-20hr    1572 embryo 20-22hr    1873 embryo 22-24hr    1894 larva L1    1374 larva L2    1789 larva L3 12hr old    1287 larva L3 puffstage 1-2    1206 larva L3 puffstage 3-6    1123 larva L3 puffstage 7-9    1305 white prepupae new    1319 white prepupae 12hr    1069 white prepupae 24hr    1108 pupae 2d postWPP    1050 pupae 3d postWPP    758 pupae 4d postWPP    448 adult male 01day    620 adult male 05day    543 adult male 30day    472 adult female 01day    724 adult female 05day    1207 adult female 30day    1206 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    1390 Schneider line 2 Sg4    644 embryonic 1182-4H    800 embryonic GM2    1091 embryonic Kc167    1272 embryonic S1    646 embryonic S3    801 leg disc CME L1    907 wing disc CME-W2    1333 wing disc ML-DmD8    1554 wing disc ML-DmD9    976 wing disc ML-DmD16-c3    916 wing disc ML-DmD21    907 wing disc ML-DmD32    1051 haltere disc ML-DmD17-c3    623 eye-antennal disc ML-DmD11    1478 antennal disc ML-DmD20-c5    1070 mixed discs ML-DmD4-c1    859 CNS ML-DmBG1-c1    1190 CNS ML-DmBG2-c2    1004 tumorous blood cells mbn2    838 ovary fGS/OSS    443 ovary OSC    443 ovary OSS    235 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (1390) Schneider line 2 Sg4  (644) embryonic 1182-4H  (800) embryonic GM2  (1091) embryonic Kc167  (1272) embryonic S1  (646) embryonic S3  (801) leg disc CME L1  (907) wing disc CME-W2  (1333) wing disc ML-DmD8  (1554) wing disc ML-DmD9  (976) wing disc ML-DmD16-c3  (916) wing disc ML-DmD21  (907) wing disc ML-DmD32  (1051) haltere disc ML-DmD17-c3  (623) eye-antennal disc ML-DmD11  (1478) antennal disc ML-DmD20-c5  (1070) mixed discs ML-DmD4-c1  (859) CNS ML-DmBG1-c1  (1190) CNS ML-DmBG2-c2  (1004) tumorous blood cells mbn2  (838) ovary fGS/OSS  (443) ovary OSC  (443) ovary OSS  (235) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (1390) Schneider line 2 Sg4  (644) embryonic 1182-4H  (800) embryonic GM2  (1091) embryonic Kc167  (1272) embryonic S1  (646) embryonic S3  (801) leg disc CME L1  (907) wing disc CME-W2  (1333) wing disc ML-DmD8  (1554) wing disc ML-DmD9  (976) wing disc ML-DmD16-c3  (916) wing disc ML-DmD21  (907) wing disc ML-DmD32  (1051) haltere disc ML-DmD17-c3  (623) eye-antennal disc ML-DmD11  (1478) antennal disc ML-DmD20-c5  (1070) mixed discs ML-DmD4-c1  (859) CNS ML-DmBG1-c1  (1190) CNS ML-DmBG2-c2  (1004) tumorous blood cells mbn2  (838) ovary fGS/OSS  (443) ovary OSC  (443) ovary OSS  (235) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    1390 Schneider line 2 Sg4    644 embryonic 1182-4H    800 embryonic GM2    1091 embryonic Kc167    1272 embryonic S1    646 embryonic S3    801 leg disc CME L1    907 wing disc CME-W2    1333 wing disc ML-DmD8    1554 wing disc ML-DmD9    976 wing disc ML-DmD16-c3    916 wing disc ML-DmD21    907 wing disc ML-DmD32    1051 haltere disc ML-DmD17-c3    623 eye-antennal disc ML-DmD11    1478 antennal disc ML-DmD20-c5    1070 mixed discs ML-DmD4-c1    859 CNS ML-DmBG1-c1    1190 CNS ML-DmBG2-c2    1004 tumorous blood cells mbn2    838 ovary fGS/OSS    443 ovary OSC    443 ovary OSS    235 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    1390 Schneider line 2 Sg4    644 embryonic 1182-4H    800 embryonic GM2    1091 embryonic Kc167    1272 embryonic S1    646 embryonic S3    801 leg disc CME L1    907 wing disc CME-W2    1333 wing disc ML-DmD8    1554 wing disc ML-DmD9    976 wing disc ML-DmD16-c3    916 wing disc ML-DmD21    907 wing disc ML-DmD32    1051 haltere disc ML-DmD17-c3    623 eye-antennal disc ML-DmD11    1478 antennal disc ML-DmD20-c5    1070 mixed discs ML-DmD4-c1    859 CNS ML-DmBG1-c1    1190 CNS ML-DmBG2-c2    1004 tumorous blood cells mbn2    838 ovary fGS/OSS    443 ovary OSC    443 ovary OSS    235 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (1390) Schneider line 2 Sg4  (644) embryonic 1182-4H  (800) embryonic GM2  (1091) embryonic Kc167  (1272) embryonic S1  (646) embryonic S3  (801) leg disc CME L1  (907) wing disc CME-W2  (1333) wing disc ML-DmD8  (1554) wing disc ML-DmD9  (976) wing disc ML-DmD16-c3  (916) wing disc ML-DmD21  (907) wing disc ML-DmD32  (1051) haltere disc ML-DmD17-c3  (623) eye-antennal disc ML-DmD11  (1478) antennal disc ML-DmD20-c5  (1070) mixed discs ML-DmD4-c1  (859) CNS ML-DmBG1-c1  (1190) CNS ML-DmBG2-c2  (1004) tumorous blood cells mbn2  (838) ovary fGS/OSS  (443) ovary OSC  (443) ovary OSS  (235) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (1390) Schneider line 2 Sg4  (644) embryonic 1182-4H  (800) embryonic GM2  (1091) embryonic Kc167  (1272) embryonic S1  (646) embryonic S3  (801) leg disc CME L1  (907) wing disc CME-W2  (1333) wing disc ML-DmD8  (1554) wing disc ML-DmD9  (976) wing disc ML-DmD16-c3  (916) wing disc ML-DmD21  (907) wing disc ML-DmD32  (1051) haltere disc ML-DmD17-c3  (623) eye-antennal disc ML-DmD11  (1478) antennal disc ML-DmD20-c5  (1070) mixed discs ML-DmD4-c1  (859) CNS ML-DmBG1-c1  (1190) CNS ML-DmBG2-c2  (1004) tumorous blood cells mbn2  (838) ovary fGS/OSS  (443) ovary OSC  (443) ovary OSS  (235) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    1390 Schneider line 2 Sg4    644 embryonic 1182-4H    800 embryonic GM2    1091 embryonic Kc167    1272 embryonic S1    646 embryonic S3    801 leg disc CME L1    907 wing disc CME-W2    1333 wing disc ML-DmD8    1554 wing disc ML-DmD9    976 wing disc ML-DmD16-c3    916 wing disc ML-DmD21    907 wing disc ML-DmD32    1051 haltere disc ML-DmD17-c3    623 eye-antennal disc ML-DmD11    1478 antennal disc ML-DmD20-c5    1070 mixed discs ML-DmD4-c1    859 CNS ML-DmBG1-c1    1190 CNS ML-DmBG2-c2    1004 tumorous blood cells mbn2    838 ovary fGS/OSS    443 ovary OSC    443 ovary OSS    235 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    276 cold shock, 4-day adult    198 heat shock, 4-day adult    678 Cadmium 50 mM 6 hrs, larvae L3    587 Cadmium 50 mM 12 hrs, larvae L3    738 Cadmium 50 mM 48 hrs, 4-day adult    632 Cadmium 100 mM 48 hrs, 4-day adult    660 Copper 0.5 mM 12 hrs, larvae L3    321 Copper 15 mM 48 hrs, 4-day adult    328 Zinc 5 mM 12 hrs, larvae L3    271 Zinc 4.5 mM 48 hrs, 4-day adult    370 Ethanol 2.5% 3 hrs, larvae L3    572 Ethanol 5% 3 hrs, larvae L3    732 Ethanol 10% 3 hrs, larvae L3    654 Caffeine 1.5 mg/ml 4 hrs, larvae L3    708 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    624 Caffeine 25 mg/ml 48 hrs, 4-day adult    226 Paraquat 5 mM 48 hrs, 4-day adult    535 Paraquat 10 mM 48 hrs, 4-day adult    619 Rotenone 2 μg 12 hrs, larvae L3    669 Rotenone 8 μg 12 hrs, larvae L3    770 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (276) cold shock, 4-day adult  (198) heat shock, 4-day adult  (678) Cadmium 50 mM 6 hrs, larvae L3  (587) Cadmium 50 mM 12 hrs, larvae L3  (738) Cadmium 50 mM 48 hrs, 4-day adult  (632) Cadmium 100 mM 48 hrs, 4-day adult  (660) Copper 0.5 mM 12 hrs, larvae L3  (321) Copper 15 mM 48 hrs, 4-day adult  (328) Zinc 5 mM 12 hrs, larvae L3  (271) Zinc 4.5 mM 48 hrs, 4-day adult  (370) Ethanol 2.5% 3 hrs, larvae L3  (572) Ethanol 5% 3 hrs, larvae L3  (732) Ethanol 10% 3 hrs, larvae L3  (654) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (708) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (624) Caffeine 25 mg/ml 48 hrs, 4-day adult  (226) Paraquat 5 mM 48 hrs, 4-day adult  (535) Paraquat 10 mM 48 hrs, 4-day adult  (619) Rotenone 2 μg 12 hrs, larvae L3  (669) Rotenone 8 μg 12 hrs, larvae L3  (770) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (276) cold shock, 4-day adult  (198) heat shock, 4-day adult  (678) Cadmium 50 mM 6 hrs, larvae L3  (587) Cadmium 50 mM 12 hrs, larvae L3  (738) Cadmium 50 mM 48 hrs, 4-day adult  (632) Cadmium 100 mM 48 hrs, 4-day adult  (660) Copper 0.5 mM 12 hrs, larvae L3  (321) Copper 15 mM 48 hrs, 4-day adult  (328) Zinc 5 mM 12 hrs, larvae L3  (271) Zinc 4.5 mM 48 hrs, 4-day adult  (370) Ethanol 2.5% 3 hrs, larvae L3  (572) Ethanol 5% 3 hrs, larvae L3  (732) Ethanol 10% 3 hrs, larvae L3  (654) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (708) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (624) Caffeine 25 mg/ml 48 hrs, 4-day adult  (226) Paraquat 5 mM 48 hrs, 4-day adult  (535) Paraquat 10 mM 48 hrs, 4-day adult  (619) Rotenone 2 μg 12 hrs, larvae L3  (669) Rotenone 8 μg 12 hrs, larvae L3  (770) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    276 cold shock, 4-day adult    198 heat shock, 4-day adult    678 Cadmium 50 mM 6 hrs, larvae L3    587 Cadmium 50 mM 12 hrs, larvae L3    738 Cadmium 50 mM 48 hrs, 4-day adult    632 Cadmium 100 mM 48 hrs, 4-day adult    660 Copper 0.5 mM 12 hrs, larvae L3    321 Copper 15 mM 48 hrs, 4-day adult    328 Zinc 5 mM 12 hrs, larvae L3    271 Zinc 4.5 mM 48 hrs, 4-day adult    370 Ethanol 2.5% 3 hrs, larvae L3    572 Ethanol 5% 3 hrs, larvae L3    732 Ethanol 10% 3 hrs, larvae L3    654 Caffeine 1.5 mg/ml 4 hrs, larvae L3    708 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    624 Caffeine 25 mg/ml 48 hrs, 4-day adult    226 Paraquat 5 mM 48 hrs, 4-day adult    535 Paraquat 10 mM 48 hrs, 4-day adult    619 Rotenone 2 μg 12 hrs, larvae L3    669 Rotenone 8 μg 12 hrs, larvae L3    770 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    276 cold shock, 4-day adult    198 heat shock, 4-day adult    678 Cadmium 50 mM 6 hrs, larvae L3    587 Cadmium 50 mM 12 hrs, larvae L3    738 Cadmium 50 mM 48 hrs, 4-day adult    632 Cadmium 100 mM 48 hrs, 4-day adult    660 Copper 0.5 mM 12 hrs, larvae L3    321 Copper 15 mM 48 hrs, 4-day adult    328 Zinc 5 mM 12 hrs, larvae L3    271 Zinc 4.5 mM 48 hrs, 4-day adult    370 Ethanol 2.5% 3 hrs, larvae L3    572 Ethanol 5% 3 hrs, larvae L3    732 Ethanol 10% 3 hrs, larvae L3    654 Caffeine 1.5 mg/ml 4 hrs, larvae L3    708 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    624 Caffeine 25 mg/ml 48 hrs, 4-day adult    226 Paraquat 5 mM 48 hrs, 4-day adult    535 Paraquat 10 mM 48 hrs, 4-day adult    619 Rotenone 2 μg 12 hrs, larvae L3    669 Rotenone 8 μg 12 hrs, larvae L3    770 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (276) cold shock, 4-day adult  (198) heat shock, 4-day adult  (678) Cadmium 50 mM 6 hrs, larvae L3  (587) Cadmium 50 mM 12 hrs, larvae L3  (738) Cadmium 50 mM 48 hrs, 4-day adult  (632) Cadmium 100 mM 48 hrs, 4-day adult  (660) Copper 0.5 mM 12 hrs, larvae L3  (321) Copper 15 mM 48 hrs, 4-day adult  (328) Zinc 5 mM 12 hrs, larvae L3  (271) Zinc 4.5 mM 48 hrs, 4-day adult  (370) Ethanol 2.5% 3 hrs, larvae L3  (572) Ethanol 5% 3 hrs, larvae L3  (732) Ethanol 10% 3 hrs, larvae L3  (654) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (708) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (624) Caffeine 25 mg/ml 48 hrs, 4-day adult  (226) Paraquat 5 mM 48 hrs, 4-day adult  (535) Paraquat 10 mM 48 hrs, 4-day adult  (619) Rotenone 2 μg 12 hrs, larvae L3  (669) Rotenone 8 μg 12 hrs, larvae L3  (770) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (276) cold shock, 4-day adult  (198) heat shock, 4-day adult  (678) Cadmium 50 mM 6 hrs, larvae L3  (587) Cadmium 50 mM 12 hrs, larvae L3  (738) Cadmium 50 mM 48 hrs, 4-day adult  (632) Cadmium 100 mM 48 hrs, 4-day adult  (660) Copper 0.5 mM 12 hrs, larvae L3  (321) Copper 15 mM 48 hrs, 4-day adult  (328) Zinc 5 mM 12 hrs, larvae L3  (271) Zinc 4.5 mM 48 hrs, 4-day adult  (370) Ethanol 2.5% 3 hrs, larvae L3  (572) Ethanol 5% 3 hrs, larvae L3  (732) Ethanol 10% 3 hrs, larvae L3  (654) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (708) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (624) Caffeine 25 mg/ml 48 hrs, 4-day adult  (226) Paraquat 5 mM 48 hrs, 4-day adult  (535) Paraquat 10 mM 48 hrs, 4-day adult  (619) Rotenone 2 μg 12 hrs, larvae L3  (669) Rotenone 8 μg 12 hrs, larvae L3  (770) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    276 cold shock, 4-day adult    198 heat shock, 4-day adult    678 Cadmium 50 mM 6 hrs, larvae L3    587 Cadmium 50 mM 12 hrs, larvae L3    738 Cadmium 50 mM 48 hrs, 4-day adult    632 Cadmium 100 mM 48 hrs, 4-day adult    660 Copper 0.5 mM 12 hrs, larvae L3    321 Copper 15 mM 48 hrs, 4-day adult    328 Zinc 5 mM 12 hrs, larvae L3    271 Zinc 4.5 mM 48 hrs, 4-day adult    370 Ethanol 2.5% 3 hrs, larvae L3    572 Ethanol 5% 3 hrs, larvae L3    732 Ethanol 10% 3 hrs, larvae L3    654 Caffeine 1.5 mg/ml 4 hrs, larvae L3    708 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    624 Caffeine 25 mg/ml 48 hrs, 4-day adult    226 Paraquat 5 mM 48 hrs, 4-day adult    535 Paraquat 10 mM 48 hrs, 4-day adult    619 Rotenone 2 μg 12 hrs, larvae L3    669 Rotenone 8 μg 12 hrs, larvae L3    770 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_22 mE1_20_mRNA_expression_cluster_01
External Data & Images
Linkouts	BDGP expression data • RE09547 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0029785 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG4111-RB;CG4111-RA;CG4111-RB
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL4pnr-MD237 RpL35GD10512 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of RpL35 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of RpL35 Class Mutagen Stocks Known lesion RpL35GD10512 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes RpL35KK108248 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes RpL35NIG.4111R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10512} NA P{KK108248} NA P{NIG.4111R} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 7 unique terms )
Terms Based on Experimental Evidence ( 5 terms )
Molecular Function
CV term Evidence References
structural constituent of ribosome inferred from direct assay (Alonso and Santaren, 2006)
Biological Process
CV term Evidence References
centrosome duplication inferred from mutant phenotype (Müller et al., 2010) mitotic spindle elongation inferred from mutant phenotype (Goshima et al., 2007) mitotic spindle organization inferred from mutant phenotype (Goshima et al., 2007)
Cellular Component
CV term Evidence References
ribosome inferred from direct assay (Alonso and Santaren, 2006)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
structural constituent of ribosome inferred from sequence or structural similarity with UniProtKB:P42766 (FlyBase, 1992-)
Biological Process
CV term Evidence References
translation inferred from sequence or structural similarity with UniProtKB:P42766 (FlyBase, 1992-)
Cellular Component
CV term Evidence References
cytosolic large ribosomal subunit inferred from sequence or structural similarity with UniProtKB:P42766 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions RpL35 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 57988 DroID - A comprehensive database of gene and protein interactions. • FBgn0029785 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31483
Orthologs
OrthoDB Orthologs (50) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG61ZFXK Dipteran inclusive ortholog search EOG669R4C Insect inclusive ortholog search EOG68CZS8 Arthropod inclusive ortholog search EOG6CJT11 Metazoa inclusive ortholog search EOG625JPJ
Orthologs in Drosophila Species (EOG61ZFXK)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\RpL35     Drosophila simulans   Dsim\GD16739 Y   Drosophila sechellia   Dsec\GM12424 Y   Drosophila erecta   Dere\GG18773 Y   Drosophila yakuba   Dyak\GE16415 Y   Drosophila ananassae   Dana\GF21366 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA17966 Y   Drosophila persimilis   Dper\GL18236 Y   Drosophila willistoni   Dwil\GK19969 Y   Drosophila virilis   Dvir\GJ16713 Y   Drosophila mojavensis   Dmoj\GI16248 Y   Drosophila grimshawi   Dgri\GH12672     Drosophila grimshawi   Dgri\GH12668 Y
Orthologs in non-Drosophila Dipterans (EOG669R4C)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL005629   Anopheles gambiae Malaria mosquito  Agam\AGAP001408   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012738
Orthologs in non-Dipteran Insects (EOG68CZS8)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB40448   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG003675   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH10690   Atta cephalotes Leafcutter ant  Acep\ACEP10197   Camponotus floridanus Florida carpenter ant  Cflo\CFLO21931   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL20531   Linepithema humile Argentine ant  Lhum\LH19882   Pogonomyrmex barbatus Red harvester ant  Pbar\PB13739   Solenopsis invicta Red fire ant  Sinv\SINV13781   Acyrthosiphon pisum Pea aphid  Apim\ACYPI006417   Bombyx mori Silkmoth  Bmor\BGIBMGA005928   Pediculus humanus Human body louse  Phum\PHUM109840   Tribolium castaneum Red flour beetle  Tcas\TC014007
Orthologs in non-Insect Arthropods (EOG6CJT11)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_301332   Ixodes scapularis Deer tick  Isca\ISCW017219
Orthologs in non-Arthropod Metazoa (EOG625JPJ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\rpl-35   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_010528gn   Danio rerio Zebrafish  Drer\rpl35   Xenopus tropicalis Western clawed frog  Xtro\rpl35   Gallus gallus Domestic chicken  Ggal\RPL35   Mus musculus House mouse  Mmus\Rpl35   Mus musculus House mouse  Mmus\Gm10269   Mus musculus House mouse  Mmus\Rpl35   Mus musculus House mouse  Mmus\Gm8444   Rattus norvegicus Norway rat  Rnor\RGD1563157   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000014105   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000021300   Rattus norvegicus Norway rat  Rnor\RGD1564550   Rattus norvegicus Norway rat  Rnor\LOC681918   Rattus norvegicus Norway rat  Rnor\Rpl35   Rattus norvegicus Norway rat  Rnor\LOC367050   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000003158   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000024270   Homo sapiens Human  Hsap\ENSG00000136942
Human Orthologs (1)
Gene OMIM HGNC Hsap\ENSG00000136942
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD16739 Drosophila sechellia Dsec\GM12424 Drosophila erecta Dere\GG18773 Drosophila yakuba Dyak\GE16415 Drosophila ananassae Dana\GF21366 Drosophila pseudoobscura pseudoobscura Dpse\GA17966 Drosophila persimilis Dper\GL18236 Drosophila willistoni Dwil\GK19969 Drosophila virilis Dvir\GJ16713 Drosophila mojavensis Dmoj\GI16248 Drosophila grimshawi Dgri\GH12668
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
VDRC	v38950 w1118; P{GD10512}v38950 v38951 w1118; P{GD10512}v38951
Genomic Clones ( 2 )
	BACR27C07 BACR27J18 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 421 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH20886 RE09547
Other clones	FI02809
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH01651 GH02687 GH11441 GH14116 GH22553 GH24990 GM02266 GM10338 GM14069 GM14082 GM16195 GM17048 GM20173 GM20188 GM20680 GM21160 GM22860 GM22992 GM23970 GM24539 GM27248 GM27274 GM29608 GM30701 GM32118 LD33122 LP02821 LP03848 LP04310 LP04618 LP12728 LP13266 LP16420 LP16438 LP17086 LP21624 LP21670 LP21884 RE02725 RE05280 RE05526 RE05767 RE07066 RE08219 RE09224 RE13121 RE16339 RE18248 RE19944 RE20143 RE28571 RE28971 RE32462 RE38334 RE38728 RE39216 RE43434 RE56961 RE61535 RE64748 RE66111 RE67744 RE68590 RE69442 RE69473 RE69630 RE69968 RE71978 RE72463 RE73522 RE74007 RH02192 RH06021 RH07464 RH07868 RH10137 RH10965 RH12319 RH14023 RH14265 RH14296 RH15286 RH16915 RH17514 RH17556 RH17584 RH19635 RH21257 RH21444 RH28572 RH33155 RH38049 RH38928 RH39188 RH40090 RH40644 RH41750 RH43290 RH43463 RH43832 RH44134 RH45451 RH47186 RH47272 RH50284 RH52183 RH53051 RH57670 RH58496 RH59247 RH61284 RH62241 RH62629 RH65872 RH70422 RH73082 RH74206 SD04989 SD05263 SD05524 SD06870 SD08730 SD08861 SD11020 SD11433 SD13141 SD13605 SD14286 SD15965 SD16109 SD16133 SD16594 SD17774 SD18645 SD18766 SD19489 SD20541 SD20916 SD21196 SD22122 SD22890 SD23153 SD23184 SD23922 SD24534 SD25496 SD25727 SD26559 SD26824 SD27701 SD27722 SD27741 SD28109
Other clones	10731 11927 31831 34141 76329 99222 102997 119369 122271 145232 179693 521785 522653 522728 524431 524871 524876 524949 524977 525598 528275 528314 528330 542780 542874 557936 557954 561837 561848 561989 562229 569849 571137 CK01.80A.E9 CK01.123C.G4 Dmel_dig_000604_0708_0368 Dmel_dig_000677_0689_0346 Dmel_dig_001148_0605_0389 Dmel_dig_002287_0671_0315 Dmel_dig_006600_0597_1912 Dmel_dig_008145_0630_0911 Dmel_dig_008223_0649_1418 Dmel_dig_008307_0700_1059 Dmel_dig_008672_0658_1071 Dmel_dig_011263_0613_2975 Dmel_dig_012091_0588_2695 Dmel_dig_013028_0657_2021 Dmel_dig_015356_0660_2975 Dmel_dig_016901_0623_2951 Dmel_dig_017944_0624_0541 Dmel_dig_018373_0588_2262 Dmel_neb_010013_0705_0349 Dmel_neb_011347_0902_1076 Dmel_neb_011777_0826_3180 Dmel_neb_012651_0686_2435 Dmel_neb_012888_0877_1819 Dmel_neb_013621_0404_0983 Dmel_neb_013676_0914_2036 Dmel_neb_013849_0655_1337 Dmel_neb_014035_0923_0919 Dmel_neb_014119_0341_3063 Dmel_neb_014262_0949_2885 Dmel_neb_014479_0173_0630 Dmel_neb_014714_0392_2541 Dmel_neb_015173_0570_1208 Dmel_neb_015474_0688_2342 Dmel_neb_015526_0702_0794 Dmel_neb_015873_0695_1455 Dmel_neb_015924_0952_1941 EC08001 EC13556 EC14540 EC14838 EC14907 EC15059 EC24250 EC25764 EC26041 EC26526 EC30562 EC30582 EC34921 EC36492 EC37526 EC40773 EK094058 EK102321 EK110857 EK112452 EK142629 EK166318 EK174263 EK221364 EK224764 EK238847 EK242523 EK252830 EN02516 EN02642 EN05360 EN06058 EN06062 EN06759 EN09353 EN09440 EN11320 EN11528 EN12660 EN12722 EN13229 EN13239 EN13514 EN15733 EN16146 ESG0110d.E21_C01 ESG0115a.B21_A02 ESG0115b.B21_H02 FGC014G06 FGC023D05 FGC025F11 FGC025H04 FGH108E06 FGH112B08 FGH113E02 FGH117G12 FGH128E09 FGM209B07 FGM214A06 FGM214H03 FGM226B08 FGM236F02 FGM318F05 FGM321B10 FGM324H08 GH04885 GH15280 GH16030 GH16854 GH16856 GM01657 GM02396 GM10515 GM10552 GM10719 GM19128 IP06862 IP07062 LD12195 LD21211 LD29626 LP11451 RE03008 RE08726 RE14012 RE15681 RE18058 RE22941 RE24514 RE24743 RE38927 RE39979 RE43880 RE45245 RE45277 RE45629 RE47252 RE49943 RE49976 RE53155 RH01530 RH02141 RH03574 RH04687 RH04935 RH04938 RH06425 RH06715 RH07144 RH07459 RH07472 RH08054 RH08886 RH12338 RH13072 RH18668 RH21857 RH23107 RH24443 RH25072 RH25640 RH26443 RH27319 RH27483 RH29906 RH30268 RH32236 RH32887 RH33079 RH34306 RH34740 RH38638 RH39164 RH39965 RH41904 RH41995 RH42095 RH42163 RH45892 RH47355 RH47871 RH48701 RH51278 RH56168 RH57250 RH60406 RH61071 RH63521 RH66042 RH71190 RP003009253 RP003027102 RP003034107 RP003036337 RP003037915 RP003052994 RP003063623 RP003106035 RP003110299 RP003123188 RP003144210 RP003144406 RP003152960 RP003160122 RP003163297 RP003170561 RP003188482 RP003203996 RP003226947 RP003229056 RP003244350 RP003283973 RP003292648 RP003302459 RP003385828 RP003387266 RP003400839 RP003411205 RP003416648 RP003431729 RP003448833 RP003456608 RP003461582 RP003483905 RP003527957 RP003535332 RP003565176 RP003585730 RP003599665 RP003625787 SD04147 SD11888 SD12751 SD13395 UUGC0548 UUGC0741
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0029785 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31483
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG4111 anon-EST:fe1C12 anon-EST:Posey157 (Bayraktaroglu, 2000.11.2) Source for merge of: CG4111 BcDNA:RE09547 (FlyBase, 1996-)
Additional comments	"RpL35" likely corresponds to "M(1)5A". (Marygold et al., 2007) Source for merge of CG4111 BcDNA:RE09547 was a shared cDNA (date:030728). (FlyBase, 1996-)
Other Comments
	Haploinsufficient locus. (Cook et al., 2012) RNAi screen using dsRNA made from templates generated with primers directed against this gene results in aberrantly short, monopolar spindles when assayed in S2 cells. This phenotype can be observed when the screen is performed with or without Cdc27 dsRNA. (Goshima et al., 2007) Likely Minute gene. (Marygold et al., 2007) RpL35 lies in a gap in deletion coverage. (Marygold et al., 2007)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132015 NM_167043 RefSeq (Proteins) • NP_572243 NP_727016 DDBJ / EMBL / GenBank • AA433207 AAF46058 AAM48393 AAN09148 AF083287 AY118364 BI168702 Entrez Gene - A searchable database of RefSeq genes. • 31483 UniProtKB/TrEMBL • Q8MT59 Q9W499
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein L29, conserved site (IPR018254) Ribosomal protein L29 (IPR001854) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE09547
Linkouts
	BioGRID - A database of protein and genetic interactions • 57988 DroID - A comprehensive database of gene and protein interactions. • FBgn0029785 DRSC - Results from RNAi screens. • FBgn0029785 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0029785 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG4111-RB;CG4111-RA;CG4111-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0029785 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31483 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31483 modMine - Data generated by the modENCODE project. • FBgn0029785
Synonyms & Secondary IDs ( 10 )
Reported As
Symbol Synonym	anon-EST:fe1C12   anon-EST:Posey157   BcDNA:RE09547   CG4111 (Cermelli et al., 2006, Goshima et al., 2007, Marygold et al., 2007, Kim et al., 2010, Keleman et al., 2009.8.5) RpL35 (Ramos et al., 2006, Cermelli et al., 2006, Marygold et al., 2007, Kim et al., 2010, Japanese National Institute of Genetics, 2012.5.21, Cook et al., 2012) Rp L35 (Alonso and Santaren, 2006) RpL35e (Goshima et al., 2007) unnamed (Schmid and Tautz, 1997)
Name Synonym	anon-fast-evolving-1C12   Ribosomal protein L35 (Ashburner and Marygold, 2004.7.2)
Secondary FlyBase IDs
	FBgn0025262 FBgn0026281 FBgn0063066
References ( 28 )
Generate a list of	All references relating to this gene ( 28 )
List References by type	Research paper  ( 11 ) Supplementary material  ( 6 ) Personal communication to FlyBase  ( 5 ) FlyBase analysis  ( 2 ) Stock list  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 2 )
	Cook et al., 2012, Genome Biol. 13(3): R21 The generation of chromosomal deletions to provide extensive coverage and subdivision of the Drosophila melanogaster genome. [FBrf0219066] Booker et al., 2011, BMC Genomics 12: 50 False negative rates in Drosophila cell-based RNAi screens: a case study. [FBrf0212969] Show all research papers ...