Gene Dmel\CG5937

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General Information

Symbol

Dmel\CG5937

Species

D. melanogaster

Name

Annotation symbol

CG5937

Feature type

protein_coding_gene

FlyBase ID

FBgn0029834

Gene Model Status

Current

Stock availability

3 publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

5D2-5D3

Sequence location

X:5,934,038..5,944,414 [+]

Genomic Maps

Select View:

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG5937 (FBgn0029834). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: regulation of ARF protein signal transduction. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Domain of unknown function DUF1981, SEC7 associated; SEC7-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 12-24 hour embryonic stages, during early larval stages. Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1631870_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG5937. Gene sequence location is X:5934038..5944414.

User Contributed Data

Beta version, feedback welcome

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2013_03

FB2013_02

Controlled Vocabulary Terms

trans-Golgi network

vesicle-mediated transport

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

5D2-5D3

Limits computationally determined from genome sequence between P{EP}EP1457^EP1457&P{EP}CG5928^EP1083 and P{EP}EP1311&P{EP}EP1384

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG5937 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Gene model reviewed during 5.46

Tissue-specific extension of 3' UTRs observed during later stages (FBrf0218523, FBrf0219848); all variants may not be annotated

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG5937-RC

FBtr0305345

NM_001103418

8280

2051

CG5937-RD

FBtr0305346

NM_132061

8298

2051

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG5937-PC

FBpp0293888

228.0

2051

6.36

NP_001096888

ABW09341

CG5937-PD

FBpp0293889

228.0

2051

6.36

NP_572289

AAF46115

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

SEC7-like (IPR000904)

Domain of unknown function DUF1981, SEC7 associated (IPR015403)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

day 5 of adulthood & male -- day 7 of adulthood & male

spermatozoon

(Dorus et al., 2006)

Additional Descriptive Data

Marker for

Subcellular Localization (GO Cellular Component)

CV term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

Reference

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	gene max expression
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Little or no expression detected in any larval or adult organs/tissues.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		6.35
Larval Midgut		6.4
Larval Hindgut		5.3
Larval Malpighian Tubules		3.9
Larval Fat Body		4
Larval Salivary Gland		1.4
Larval Trachea		2.05
Larval Carcass		4.35
Adult Head		8.8
Adult Eye		1.825
Adult Brain		20.2
Adult Thoracic-Abdominal Ganglion		10.1
Adult Crop		3.7
Adult Midgut		5.9
Adult Hindgut		3.6
Adult Malpighian Tubules		3.8
Adult Fat Body		7.8
Adult Salivary Gland		11.6
Adult Heart		7.75
Adult VirginFemale Spermatheca		3.4
Adult InseminatedFemale Spermatheca		4.6
Adult Ovary		3.9
Adult Testis		1.9
Adult Male Accessory Gland		6.1
Adult Carcass		7.3
Expression Level Scale		None Low

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		6.35
Larval Midgut		6.4
Larval Hindgut		5.3
Larval Malpighian Tubules		3.9
Larval Fat Body		4
Larval Salivary Gland		1.4
Larval Trachea		2.05
Larval Carcass		4.35
Adult Head		8.8
Adult Eye		1.825
Adult Brain		20.2
Adult Thoracic-Abdominal Ganglion		10.1
Adult Crop		3.7
Adult Midgut		5.9
Adult Hindgut		3.6
Adult Malpighian Tubules		3.8
Adult Fat Body		7.8
Adult Salivary Gland		11.6
Adult Heart		7.75
Adult VirginFemale Spermatheca		3.4
Adult InseminatedFemale Spermatheca		4.6
Adult Ovary		3.9
Adult Testis		1.9
Adult Male Accessory Gland		6.1
Adult Carcass		7.3
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		6.35
Larval Midgut		6.4
Larval Hindgut		5.3
Larval Malpighian Tubules		3.9
Larval Fat Body		4
Larval Salivary Gland		1.4
Larval Trachea		2.05
Larval Carcass		4.35
Adult Head		8.8
Adult Eye		1.825
Adult Brain		20.2
Adult Thoracic-Abdominal Ganglion		10.1
Adult Crop		3.7
Adult Midgut		5.9
Adult Hindgut		3.6
Adult Malpighian Tubules		3.8
Adult Fat Body		7.8
Adult Salivary Gland		11.6
Adult Heart		7.75
Adult VirginFemale Spermatheca		3.4
Adult InseminatedFemale Spermatheca		4.6
Adult Ovary		3.9
Adult Testis		1.9
Adult Male Accessory Gland		6.1
Adult Carcass		7.3
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		6.35
Larval Midgut		6.4
Larval Hindgut		5.3
Larval Malpighian Tubules		3.9
Larval Fat Body		4
Larval Salivary Gland		1.4
Larval Trachea		2.05
Larval Carcass		4.35
Adult Head		8.8
Adult Eye		1.825
Adult Brain		20.2
Adult Thoracic-Abdominal Ganglion		10.1
Adult Crop		3.7
Adult Midgut		5.9
Adult Hindgut		3.6
Adult Malpighian Tubules		3.8
Adult Fat Body		7.8
Adult Salivary Gland		11.6
Adult Heart		7.75
Adult VirginFemale Spermatheca		3.4
Adult InseminatedFemale Spermatheca		4.6
Adult Ovary		3.9
Adult Testis		1.9
Adult Male Accessory Gland		6.1
Adult Carcass		7.3
Expression Level Scale		Very high

log, scaled to maximum expression level
Tissue		Expression Level
Larval Central Nervous System		6.35
Larval Midgut		6.4
Larval Hindgut		5.3
Larval Malpighian Tubules		3.9
Larval Fat Body		4
Larval Salivary Gland		1.4
Larval Trachea		2.05
Larval Carcass		4.35
Adult Head		8.8
Adult Eye		1.825
Adult Brain		20.2
Adult Thoracic-Abdominal Ganglion		10.1
Adult Crop		3.7
Adult Midgut		5.9
Adult Hindgut		3.6
Adult Malpighian Tubules		3.8
Adult Fat Body		7.8
Adult Salivary Gland		11.6
Adult Heart		7.75
Adult VirginFemale Spermatheca		3.4
Adult InseminatedFemale Spermatheca		4.6
Adult Ovary		3.9
Adult Testis		1.9
Adult Male Accessory Gland		6.1
Adult Carcass		7.3
Expression Level Scale		None Low

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		6.35
Larval Midgut		6.4
Larval Hindgut		5.3
Larval Malpighian Tubules		3.9
Larval Fat Body		4
Larval Salivary Gland		1.4
Larval Trachea		2.05
Larval Carcass		4.35
Adult Head		8.8
Adult Eye		1.825
Adult Brain		20.2
Adult Thoracic-Abdominal Ganglion		10.1
Adult Crop		3.7
Adult Midgut		5.9
Adult Hindgut		3.6
Adult Malpighian Tubules		3.8
Adult Fat Body		7.8
Adult Salivary Gland		11.6
Adult Heart		7.75
Adult VirginFemale Spermatheca		3.4
Adult InseminatedFemale Spermatheca		4.6
Adult Ovary		3.9
Adult Testis		1.9
Adult Male Accessory Gland		6.1
Adult Carcass		7.3
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		6.35
Larval Midgut		6.4
Larval Hindgut		5.3
Larval Malpighian Tubules		3.9
Larval Fat Body		4
Larval Salivary Gland		1.4
Larval Trachea		2.05
Larval Carcass		4.35
Adult Head		8.8
Adult Eye		1.825
Adult Brain		20.2
Adult Thoracic-Abdominal Ganglion		10.1
Adult Crop		3.7
Adult Midgut		5.9
Adult Hindgut		3.6
Adult Malpighian Tubules		3.8
Adult Fat Body		7.8
Adult Salivary Gland		11.6
Adult Heart		7.75
Adult VirginFemale Spermatheca		3.4
Adult InseminatedFemale Spermatheca		4.6
Adult Ovary		3.9
Adult Testis		1.9
Adult Male Accessory Gland		6.1
Adult Carcass		7.3
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		6.35
Larval Midgut		6.4
Larval Hindgut		5.3
Larval Malpighian Tubules		3.9
Larval Fat Body		4
Larval Salivary Gland		1.4
Larval Trachea		2.05
Larval Carcass		4.35
Adult Head		8.8
Adult Eye		1.825
Adult Brain		20.2
Adult Thoracic-Abdominal Ganglion		10.1
Adult Crop		3.7
Adult Midgut		5.9
Adult Hindgut		3.6
Adult Malpighian Tubules		3.8
Adult Fat Body		7.8
Adult Salivary Gland		11.6
Adult Heart		7.75
Adult VirginFemale Spermatheca		3.4
Adult InseminatedFemale Spermatheca		4.6
Adult Ovary		3.9
Adult Testis		1.9
Adult Male Accessory Gland		6.1
Adult Carcass		7.3
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	8.8
NA	Eye	1.825
NA	Brain	20.2
6.35	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	no informative data
NA	Crop	3.7
6.4	Midgut	5.9
5.3	Hindgut	3.6
3.9	Malpighian Tubules	3.8
4	Fat Body	7.8
1.4	Salivary Gland	no informative data
NA	Heart	7.75
2.05	Trachea	NA
NA	VirginFemale Spermatheca	3.4
NA	InseminatedFemale Spermatheca	4.6
NA	Ovary	3.9
NA	Testis	1.9
NA	Male Accessory Gland	6.1
4.35	Carcass	7.3

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		5
head, virgin 4-day female		6
head, virgin 20-day female		6
head, mated 1-day female		6
head, mated 4-day female		6
head, mated 20-day female		6
head, mated 1-day male		11
head, mated 4-day male		11
head, mated 20-day male		12
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		1
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		5
head, virgin 4-day female		6
head, virgin 20-day female		6
head, mated 1-day female		6
head, mated 4-day female		6
head, mated 20-day female		6
head, mated 1-day male		11
head, mated 4-day male		11
head, mated 20-day male		12
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		1
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		5
head, virgin 4-day female		6
head, virgin 20-day female		6
head, mated 1-day female		6
head, mated 4-day female		6
head, mated 20-day female		6
head, mated 1-day male		11
head, mated 4-day male		11
head, mated 20-day male		12
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		1
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		5
head, virgin 4-day female		6
head, virgin 20-day female		6
head, mated 1-day female		6
head, mated 4-day female		6
head, mated 20-day female		6
head, mated 1-day male		11
head, mated 4-day male		11
head, mated 20-day male		12
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		1
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		5
head, virgin 4-day female		6
head, virgin 20-day female		6
head, mated 1-day female		6
head, mated 4-day female		6
head, mated 20-day female		6
head, mated 1-day male		11
head, mated 4-day male		11
head, mated 20-day male		12
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		1
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		5
head, virgin 4-day female		6
head, virgin 20-day female		6
head, mated 1-day female		6
head, mated 4-day female		6
head, mated 20-day female		6
head, mated 1-day male		11
head, mated 4-day male		11
head, mated 20-day male		12
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		1
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		5
head, virgin 4-day female		6
head, virgin 20-day female		6
head, mated 1-day female		6
head, mated 4-day female		6
head, mated 20-day female		6
head, mated 1-day male		11
head, mated 4-day male		11
head, mated 20-day male		12
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		1
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Tissue		Expression Level
imaginal disc, larvae L3 wandering		1
central nervous system, larvae L3		10
central nervous system, pupae P8		8
head, virgin 1-day female		5
head, virgin 4-day female		6
head, virgin 20-day female		6
head, mated 1-day female		6
head, mated 4-day female		6
head, mated 20-day female		6
head, mated 1-day male		11
head, mated 4-day male		11
head, mated 20-day male		12
salivary gland, larvae L3 wandering		0
salivary gland, white prepupae		0
digestive system, larvae L3 wandering		0
digestive system, 1-day adult		0
digestive system, 4-day adult		0
digestive system, 20-day adult		0
fat body, larvae L3 wandering		0
fat body, white prepupae		1
fat body, pupae P8		1
carcass, larvae L3 wandering		2
carcass, 1-day adult		1
carcass, 4-day adult		1
carcass, 20-day adult		1
ovary, virgin 4-day female		0
ovary, mated 4-day female		0
testis, mated 4-day male		0
accessory gland, mated 4-day male		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Tissue		Expression Level
imaginal disc, larvae L3 wandering
central nervous system, larvae L3
central nervous system, pupae P8
head, virgin 1-day female
head, virgin 4-day female
head, virgin 20-day female
head, mated 1-day female
head, mated 4-day female
head, mated 20-day female
head, mated 1-day male
head, mated 4-day male
head, mated 20-day male
salivary gland, larvae L3 wandering
salivary gland, white prepupae
digestive system, larvae L3 wandering
digestive system, 1-day adult
digestive system, 4-day adult
digestive system, 20-day adult
fat body, larvae L3 wandering
fat body, white prepupae
fat body, pupae P8
carcass, larvae L3 wandering
carcass, 1-day adult
carcass, 4-day adult
carcass, 20-day adult
ovary, virgin 4-day female
ovary, mated 4-day female
testis, mated 4-day male
accessory gland, mated 4-day male

modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of extremely low expression. Peak expression observed within 12-24 hour embryonic stages, during early larval stages.
[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		2
embryo 12-14hr		5
embryo 14-16hr		7
embryo 16-18hr		7
embryo 18-20hr		6
embryo 20-22hr		5
embryo 22-24hr		5
larva L1		5
larva L2		2
larva L3 12hr old		1
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		1
larva L3 puffstage 7-9		2
white prepupae new		2
white prepupae 12hr		3
white prepupae 24hr		3
pupae 2d postWPP		3
pupae 3d postWPP		3
pupae 4d postWPP		3
adult male 01day		3
adult male 05day		3
adult male 30day		4
adult female 01day		2
adult female 05day		1
adult female 30day		1
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		2
embryo 12-14hr		5
embryo 14-16hr		7
embryo 16-18hr		7
embryo 18-20hr		6
embryo 20-22hr		5
embryo 22-24hr		5
larva L1		5
larva L2		2
larva L3 12hr old		1
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		1
larva L3 puffstage 7-9		2
white prepupae new		2
white prepupae 12hr		3
white prepupae 24hr		3
pupae 2d postWPP		3
pupae 3d postWPP		3
pupae 4d postWPP		3
adult male 01day		3
adult male 05day		3
adult male 30day		4
adult female 01day		2
adult female 05day		1
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		2
embryo 12-14hr		5
embryo 14-16hr		7
embryo 16-18hr		7
embryo 18-20hr		6
embryo 20-22hr		5
embryo 22-24hr		5
larva L1		5
larva L2		2
larva L3 12hr old		1
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		1
larva L3 puffstage 7-9		2
white prepupae new		2
white prepupae 12hr		3
white prepupae 24hr		3
pupae 2d postWPP		3
pupae 3d postWPP		3
pupae 4d postWPP		3
adult male 01day		3
adult male 05day		3
adult male 30day		4
adult female 01day		2
adult female 05day		1
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		2
embryo 12-14hr		5
embryo 14-16hr		7
embryo 16-18hr		7
embryo 18-20hr		6
embryo 20-22hr		5
embryo 22-24hr		5
larva L1		5
larva L2		2
larva L3 12hr old		1
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		1
larva L3 puffstage 7-9		2
white prepupae new		2
white prepupae 12hr		3
white prepupae 24hr		3
pupae 2d postWPP		3
pupae 3d postWPP		3
pupae 4d postWPP		3
adult male 01day		3
adult male 05day		3
adult male 30day		4
adult female 01day		2
adult female 05day		1
adult female 30day		1
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		2
embryo 12-14hr		5
embryo 14-16hr		7
embryo 16-18hr		7
embryo 18-20hr		6
embryo 20-22hr		5
embryo 22-24hr		5
larva L1		5
larva L2		2
larva L3 12hr old		1
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		1
larva L3 puffstage 7-9		2
white prepupae new		2
white prepupae 12hr		3
white prepupae 24hr		3
pupae 2d postWPP		3
pupae 3d postWPP		3
pupae 4d postWPP		3
adult male 01day		3
adult male 05day		3
adult male 30day		4
adult female 01day		2
adult female 05day		1
adult female 30day		1
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		2
embryo 12-14hr		5
embryo 14-16hr		7
embryo 16-18hr		7
embryo 18-20hr		6
embryo 20-22hr		5
embryo 22-24hr		5
larva L1		5
larva L2		2
larva L3 12hr old		1
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		1
larva L3 puffstage 7-9		2
white prepupae new		2
white prepupae 12hr		3
white prepupae 24hr		3
pupae 2d postWPP		3
pupae 3d postWPP		3
pupae 4d postWPP		3
adult male 01day		3
adult male 05day		3
adult male 30day		4
adult female 01day		2
adult female 05day		1
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		2
embryo 12-14hr		5
embryo 14-16hr		7
embryo 16-18hr		7
embryo 18-20hr		6
embryo 20-22hr		5
embryo 22-24hr		5
larva L1		5
larva L2		2
larva L3 12hr old		1
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		1
larva L3 puffstage 7-9		2
white prepupae new		2
white prepupae 12hr		3
white prepupae 24hr		3
pupae 2d postWPP		3
pupae 3d postWPP		3
pupae 4d postWPP		3
adult male 01day		3
adult male 05day		3
adult male 30day		4
adult female 01day		2
adult female 05day		1
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		0
embryo 02-04hr		0
embryo 04-06hr		1
embryo 06-08hr		1
embryo 08-10hr		1
embryo 10-12hr		2
embryo 12-14hr		5
embryo 14-16hr		7
embryo 16-18hr		7
embryo 18-20hr		6
embryo 20-22hr		5
embryo 22-24hr		5
larva L1		5
larva L2		2
larva L3 12hr old		1
larva L3 puffstage 1-2		0
larva L3 puffstage 3-6		1
larva L3 puffstage 7-9		2
white prepupae new		2
white prepupae 12hr		3
white prepupae 24hr		3
pupae 2d postWPP		3
pupae 3d postWPP		3
pupae 4d postWPP		3
adult male 01day		3
adult male 05day		3
adult male 30day		4
adult female 01day		2
adult female 05day		1
adult female 30day		1
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)

modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		0
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		0
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		1
CNS ML-DmBG2-c2		1
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		0
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		0
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		1
CNS ML-DmBG2-c2		1
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		0
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		0
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		1
CNS ML-DmBG2-c2		1
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		0
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		0
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		1
CNS ML-DmBG2-c2		1
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		0
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		0
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		1
CNS ML-DmBG2-c2		1
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		0
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		0
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		1
CNS ML-DmBG2-c2		1
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		0
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		0
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		1
CNS ML-DmBG2-c2		1
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Cell Line		Expression Level
Schneider line 2 S2R+		0
Schneider line 2 Sg4		0
embryonic 1182-4H		0
embryonic GM2		0
embryonic Kc167		0
embryonic S1		0
embryonic S3		0
leg disc CME L1		0
wing disc CME-W2		0
wing disc ML-DmD8		0
wing disc ML-DmD9		1
wing disc ML-DmD16-c3		0
wing disc ML-DmD21		0
wing disc ML-DmD32		0
haltere disc ML-DmD17-c3		0
eye-antennal disc ML-DmD11		0
antennal disc ML-DmD20-c5		0
mixed discs ML-DmD4-c1		0
CNS ML-DmBG1-c1		1
CNS ML-DmBG2-c2		1
tumorous blood cells mbn2		0
ovary fGS/OSS		0
ovary OSC		0
ovary OSS		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Cell Line		Expression Level
Schneider line 2 S2R+
Schneider line 2 Sg4
embryonic 1182-4H
embryonic GM2
embryonic Kc167
embryonic S1
embryonic S3
leg disc CME L1
wing disc CME-W2
wing disc ML-DmD8
wing disc ML-DmD9
wing disc ML-DmD16-c3
wing disc ML-DmD21
wing disc ML-DmD32
haltere disc ML-DmD17-c3
eye-antennal disc ML-DmD11
antennal disc ML-DmD20-c5
mixed discs ML-DmD4-c1
CNS ML-DmBG1-c1
CNS ML-DmBG2-c2
tumorous blood cells mbn2
ovary fGS/OSS
ovary OSC
ovary OSS

modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	gene max expression
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

[download data (TSV)]

Guide to modENCODE expression level colors
	No/Extremely low expression (0 - 0)
	Very low expression (1 - 3)
	Low expression (4 - 10)
	Moderate expression (11 - 25)
	Moderately high expression (26 - 50)
	High expression (51 - 100)
	Very high expression (101 - 1000)
	Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		0
Cadmium 50 mM 6 hrs, larvae L3		0
Cadmium 50 mM 12 hrs, larvae L3		0
Cadmium 50 mM 48 hrs, 4-day adult		0
Cadmium 100 mM 48 hrs, 4-day adult		1
Copper 0.5 mM 12 hrs, larvae L3		0
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		0
Ethanol 10% 3 hrs, larvae L3		0
Caffeine 1.5 mg/ml 4 hrs, larvae L3		0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		0
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate

Linear, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		0
Cadmium 50 mM 6 hrs, larvae L3		0
Cadmium 50 mM 12 hrs, larvae L3		0
Cadmium 50 mM 48 hrs, 4-day adult		0
Cadmium 100 mM 48 hrs, 4-day adult		1
Copper 0.5 mM 12 hrs, larvae L3		0
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		0
Ethanol 10% 3 hrs, larvae L3		0
Caffeine 1.5 mg/ml 4 hrs, larvae L3		0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		0
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high

Linear, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		0
Cadmium 50 mM 6 hrs, larvae L3		0
Cadmium 50 mM 12 hrs, larvae L3		0
Cadmium 50 mM 48 hrs, 4-day adult		0
Cadmium 100 mM 48 hrs, 4-day adult		1
Copper 0.5 mM 12 hrs, larvae L3		0
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		0
Ethanol 10% 3 hrs, larvae L3		0
Caffeine 1.5 mg/ml 4 hrs, larvae L3		0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		0
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		0
Cadmium 50 mM 6 hrs, larvae L3		0
Cadmium 50 mM 12 hrs, larvae L3		0
Cadmium 50 mM 48 hrs, 4-day adult		0
Cadmium 100 mM 48 hrs, 4-day adult		1
Copper 0.5 mM 12 hrs, larvae L3		0
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		0
Ethanol 10% 3 hrs, larvae L3		0
Caffeine 1.5 mg/ml 4 hrs, larvae L3		0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		0
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Extremely high

log, scaled to maximum expression level
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		0
Cadmium 50 mM 6 hrs, larvae L3		0
Cadmium 50 mM 12 hrs, larvae L3		0
Cadmium 50 mM 48 hrs, 4-day adult		0
Cadmium 100 mM 48 hrs, 4-day adult		1
Copper 0.5 mM 12 hrs, larvae L3		0
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		0
Ethanol 10% 3 hrs, larvae L3		0
Caffeine 1.5 mg/ml 4 hrs, larvae L3		0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		0
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate

log, scaled to Moderate expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		0
Cadmium 50 mM 6 hrs, larvae L3		0
Cadmium 50 mM 12 hrs, larvae L3		0
Cadmium 50 mM 48 hrs, 4-day adult		0
Cadmium 100 mM 48 hrs, 4-day adult		1
Copper 0.5 mM 12 hrs, larvae L3		0
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		0
Ethanol 10% 3 hrs, larvae L3		0
Caffeine 1.5 mg/ml 4 hrs, larvae L3		0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		0
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high

log, scaled to High expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		0
Cadmium 50 mM 6 hrs, larvae L3		0
Cadmium 50 mM 12 hrs, larvae L3		0
Cadmium 50 mM 48 hrs, 4-day adult		0
Cadmium 100 mM 48 hrs, 4-day adult		1
Copper 0.5 mM 12 hrs, larvae L3		0
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		0
Ethanol 10% 3 hrs, larvae L3		0
Caffeine 1.5 mg/ml 4 hrs, larvae L3		0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		0
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Treatment		Expression Level
extended cold, 4-day adult		1
cold shock, 4-day adult		1
heat shock, 4-day adult		0
Cadmium 50 mM 6 hrs, larvae L3		0
Cadmium 50 mM 12 hrs, larvae L3		0
Cadmium 50 mM 48 hrs, 4-day adult		0
Cadmium 100 mM 48 hrs, 4-day adult		1
Copper 0.5 mM 12 hrs, larvae L3		0
Copper 15 mM 48 hrs, 4-day adult		1
Zinc 5 mM 12 hrs, larvae L3		0
Zinc 4.5 mM 48 hrs, 4-day adult		1
Ethanol 2.5% 3 hrs, larvae L3		1
Ethanol 5% 3 hrs, larvae L3		0
Ethanol 10% 3 hrs, larvae L3		0
Caffeine 1.5 mg/ml 4 hrs, larvae L3		0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult		1
Caffeine 25 mg/ml 48 hrs, 4-day adult		1
Paraquat 5 mM 48 hrs, 4-day adult		1
Paraquat 10 mM 48 hrs, 4-day adult		2
Rotenone 2 μg 12 hrs, larvae L3		0
Rotenone 8 μg 12 hrs, larvae L3		0
Expression Level Scale		Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Treatment		Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010, Graveley et al., 2011)

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0029834

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG5937-RA

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

viable, with Scer\GAL4^pnr-MD237

CG5937^GD9885

Other Phenotypes

Allele

visible, with Scer\GAL4^pnr-MD237

CG5937^GD9885

Phenotype manifest in

Allele

chaeta | supernumerary, with Scer\GAL4^pnr-MD237

CG5937^GD9885

Classical Alleles ( 2 )

For All Classical Alleles Show

Allele of CG5937	Class	Mutagen	Stocks	Known lesion
CG5937^d05330			1	--
CG5937^KG05490			1	--

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG5937	Class	Mutagen	Stocks	Known lesion
CG5937^GD9885		in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD9885}

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

P{SUPor-P}CG5937^KG05490

insertion of mobile activating element

P{XP}CG5937^d05330

Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 4 terms )

Molecular Function

CV term

Evidence

References

ARF guanyl-nucleotide exchange factor activity

inferred from biological aspect of ancestor with PANTHER:PTN000070561

(assigned by RefGenome)

(Gaudet et al., 2010)

Biological Process

CV term

Evidence

References

regulation of ARF protein signal transduction

inferred from electronic annotation with InterPro:IPR000904

(FlyBase Curators et al., 2004-)

vesicle-mediated transport

inferred from biological aspect of ancestor with PANTHER:PTN000070561

(assigned by RefGenome)

(Gaudet et al., 2010)

Cellular Component

CV term

Evidence

References

trans-Golgi network

inferred from biological aspect of ancestor with PANTHER:PTN000070561

(assigned by RefGenome)

(Gaudet et al., 2010)

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG5937 allele

Gene

References

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0029834

Orthologs

OrthoDB Orthologs (41) - based on analysis using Dmel annotation version 5.41

OrthoDB Ortholog Groups

OrthoDB orthology group searches

(Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288)

Drosophila inclusive ortholog search

EOG6HQF3K

Dipteran inclusive ortholog search

EOG65X841

Insect inclusive ortholog search

EOG6BG7QR

Arthropod inclusive ortholog search

EOG64MW6T

Metazoa inclusive ortholog search

EOG6FRCJ7

Orthologs in Drosophila Species (EOG6HQF3K)

Organism

Common Name

Gene

AAA Syntenic Ortholog

Multiple Dmel Genes in this Orthologous Group

Drosophila melanogaster

fruit fly

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA19244

Drosophila persimilis

Dper\GL14905

Drosophila willistoni

Dwil\GK15780

Drosophila virilis

Dvir\GJ16503

Drosophila mojavensis

Dmoj\GI15298

Drosophila grimshawi

Dgri\GH17905

Orthologs in non-Drosophila Dipterans (EOG65X841)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Aedes aegypti

Yellow fever mosquito

Aaeg\AAEL007759

Anopheles gambiae

Malaria mosquito

Agam\AGAP000635

Culex quinquefasciatus

Southern house mosquito

Cqui\CPIJ011464

Orthologs in non-Dipteran Insects (EOG6BG7QR)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Apis mellifera

Western honey bee

Amel\GB52759

Nasonia vitripennis

Parasitic wasp

Nvit\Nasvi2EG019693

Acromyrmex echinatior

Panamanian leafcutter ant

Aech\AECH19861

Atta cephalotes

Leafcutter ant

Acep\ACEP16423

Camponotus floridanus

Florida carpenter ant

Cflo\CFLO21841

Harpegnathos saltator

Jerdons jumping ant

Hsal\HSAL20842

Linepithema humile

Argentine ant

Lhum\LH15293

Pogonomyrmex barbatus

Red harvester ant

Pbar\PB12746

Solenopsis invicta

Red fire ant

Sinv\SINV13332

Acyrthosiphon pisum

Pea aphid

Apim\ACYPI060675

Bombyx mori

Silkmoth

Bmor\BGIBMGA008920

Pediculus humanus

Human body louse

Phum\PHUM333280

Tribolium castaneum

Red flour beetle

Tcas\TC006202

Tribolium castaneum

Red flour beetle

Tcas\TC006201

Orthologs in non-Insect Arthropods (EOG64MW6T)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Daphnia pulex

Water flea

Dpux\JGI_V11_274788

Ixodes scapularis

Deer tick

Isca\ISCW004487

Ixodes scapularis

Deer tick

Isca\ISCW004489

Orthologs in non-Arthropod Metazoa (EOG6FRCJ7)

Organism

Common Name

Gene

Multiple Dmel Genes in this Orthologous Group

Caenorhabditis elegans

Nematode

Cele\Y106G6G.6

Caenorhabditis elegans

Nematode

Cele\Y106G6G.2

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_021503gn

Strongylocentrotus purpuratus

Purple sea urchin

Spur\SPU_021238gn

Danio rerio

Zebrafish

Drer\si:ch211-71k24.5

Gallus gallus

Domestic chicken

Ggal\KIAA1244

Mus musculus

House mouse

Mmus\Arfgef3

Rattus norvegicus

Norway rat

Rnor\RGD1309903

Homo sapiens

Human

Hsap\A7322

Human Orthologs (1)

Gene

OMIM

HGNC

Hsap\A7322

AAA Orthologs (11) based on analysis using Dmel annotation version 4.3

Organism

Gene

Drosophila simulans

Drosophila sechellia

Drosophila erecta

Drosophila yakuba

Drosophila ananassae

Drosophila pseudoobscura pseudoobscura

Dpse\GA19244

Drosophila persimilis

Dper\GL14905

Drosophila willistoni

Dwil\GK15780

Drosophila virilis

Dvir\GJ16503

Drosophila mojavensis

Dmoj\GI15298

Drosophila grimshawi

Dgri\GH17905

Stocks & Reagents

Stocks Listed in FlyBase ( 3 )

Bloomington

14007

y¹ P{SUPor-P}CG5937^KG05490

Harvard

P{XP}CG5937^d05330

VDRC

v33613

w¹¹¹⁸; P{GD9885}v33613/CyO

Genomic Clones ( 2 )

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 8 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

IP18452

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0029834

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

31537

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Other Comments

dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R⁺ cell morphology.

(Kiger et al., 2003)

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

RefSeq (Proteins)

•

DDBJ / EMBL / GenBank

•

Entrez Gene - A searchable database of RefSeq genes.

•

31537

UniProtKB/TrEMBL

•

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

SEC7-like (IPR000904)

Domain of unknown function DUF1981, SEC7 associated (IPR015403)

Linkouts

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0029834

DRSC - Results from RNAi screens.

•

FBgn0029834

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0029834

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG5937-RA

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0029834

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

31537

modMine - Data generated by the modENCODE project.

•

FBgn0029834

Synonyms & Secondary IDs ( 1 )

Reported As

Symbol Synonym

CG5937

(Dorus et al., 2006)

Name Synonym

Secondary FlyBase IDs

References ( 14 )

Supplementary material

Smibert et al., 2012, Cell Rep. 1(3): 277--289: Table S1: Full Lists of CNS-Extended and Testis-Shortened 3' UTRs [FBrf0219848]
Graveley et al., 2011, Nature 471(7339):: Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980]
The modENCODE Consortium, 2010, Science 330(6012):: DataS14: Gene co-expression clusters. [FBrf0213979]
Mummery-Widmer et al., 2009, Nature 458(7241):: Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Dorus et al., 2006, Nat. Genet. 38(12):: Supplementary Table 1. Genes encoding the Drosophila melanogaster sperm proteome. [FBrf0206129]
Kiger et al., 2003, J. Biol. 2(4):: Additional data file 1: The gene identity and primer sequences for dsRNAs used in the RNAi screens. [FBrf0174231]

Personal communication to FlyBase

Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.: Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]

FlyBase analysis

FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations.: Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
FlyBase, 1992-, FlyBase curation.: FlyBase curation. [FBrf0105495]

Website

Gaudet et al., 2010, Annotation inferences using phylogenetic trees.: Annotation inferences using phylogenetic trees. [FBrf0220299]

Curated genome annotation

FamiliarityBreedsContempt, 1999.11, [Automatic annotations performed at the Celera Jamboreee.]: [Automatic annotations performed at the Celera Jamboreee.] [FBrf0126705]
Zheng, 1999.11, [Annotations performed at the Celera Jamboreee.]: [Annotations performed at the Celera Jamboreee.] [FBrf0126702]

DNA/RNA sequence record

Thornton, 2005.12.20, GenBank/EMBL/DDBJ: DQ334189: Drosophila miranda CG5937 gene, partial cds. [FBrf0197797]