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Gene Dmel\pigs

General Information
Symbol	Dmel\pigs	Species	D. melanogaster
Name	pickled eggs	Annotation symbol	CG3973
Feature type	protein_coding_gene	FlyBase ID	FBgn0029881
Gene Model Status	Current	Stock availability	10 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	6C1-6C3	Sequence location	X:6,494,098..6,546,131 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene pickled eggs is referred to in FlyBase by the symbol Dmel\pigs (CG3973, FBgn0029881). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: negative regulation of Notch signaling pathway; ovarian follicle cell stalk formation; ovarian follicle cell development. 17 alleles are reported. The phenotypes of these alleles are annotated with: interfollicle cell; nurse cell ring canal; ovary; follicle cell; egg chamber; germarium; indirect flight muscle. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Calponin homology domain; Growth-arrest-specific protein 2 domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 12-24 hour embryonic stages, during late pupal stages, in adult male stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, larval/adult midgut, larval/adult hindgut, adult heart, adult fat body, inseminated spermatheca, adult male accessory gland. Comments on Affy2 ProbeSet: ProbeSet 1626090_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of pigs. Gene sequence location is X:6494098..6546131.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 6C1-6C3   Limits computationally determined from genome sequence between P{EP}EP1402&P{EP}CG15893EP1634 and P{EP}Ctr1AEP1364&P{EP}EP1445
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\pigs for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.39
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) pigs-RA FBtr0070948  NM_132103   5398   977 pigs-RB FBtr0308653  NM_001258621   5355   977
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein pigs-PA   FBpp0070909   104.5   977   8.34     NP_572331   AAF46177 pigs-PB   FBpp0300876   104.5   977   8.34     NP_001245550   AFH07264
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Calponin homology domain (IPR001715) Growth-arrest-specific protein 2 domain (IPR003108)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA697770   AA698421   AE014298 AAF46177   AE014298 AFH07264   AI258184   AI543495   AJ783029   AJ783030   AJ783031   AJ783032   AJ783033   AJ783034   AJ783035   AJ783036   AJ783037   AJ783038   AJ783039   AJ783040   AJ783041   AW944624   AY059459 AAL13365   BF494961   BI373143   BI375968   BI482781   BP541212   BP542177   BP542641   BP552847   BP560327   BP560328   BT003477 AAO39480   BT028806   CK135781   CO269034   CO269344   CO271294   CO274737   CO275808   CO276392   CO277282   CO277400   CO277833   CO287729   CO288404   CO303720   CO306736   CO307562   CO312216   CO315118   CO320521   CO322719   CO330593   CO336719   CO342824   CO342977   CZ477204   CZ484885   CZ490751   EC060244   EC060266   EC060486   EC075338   EC076267   EC077333   EC081443   EC088416   EC197772   EC198827   EC203596   EC207605   EC208893   EC225292   EC227633   EC231672   EC232060   EC232090   EC232277   EC239471   EC246520   EC253659   EC253707   EC254880   EC261357   EC263293   EC264517   GH750500   GH751067   GH775491   GH778130   GH782888   GH787486   GH789787   GH790215   GH790449   GH791759   GH794260   GH799322   GH800345   GH805221   GH806294   GH810906   GH812678   GH814538   GH815848   GH824824   GH826666   GH827103   GH829792   GH836159   GH836580   GH839128   GH843408   GH849715   GH858976   GH861703   GH867474   GH868069   GH868797   GH868995   GH872914   GH883104   GH888362   GH888971   GH894787   GH896141   GH899644   GH906441   GH907376   GH919732   GH920919   GH924454   GH926392   GH927989   GH933327   GH938077   GH938433   GH939597   GH940685
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9W3Y4 Q95TD5
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Wasbrough et al., 2010)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
colocalizes_with actin cytoskeleton inferred from direct assay (Pines et al., 2010) colocalizes_with cytoplasmic microtubule inferred from direct assay (Pines et al., 2010)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, larval/adult midgut, larval/adult hindgut, adult heart, adult fat body, inseminated spermatheca, adult male accessory gland. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    88.225 Larval Midgut    102.2 Larval Hindgut    185.5 Larval Malpighian Tubules    9.7 Larval Fat Body    22.5 Larval Salivary Gland    66.3 Larval Trachea    62.675 Larval Carcass    74.125 Adult Head    116.5 Adult Eye    204.5 Adult Brain    267.9 Adult Thoracic-Abdominal Ganglion    260 Adult Crop    89.1 Adult Midgut    132.3 Adult Hindgut    103.6 Adult Malpighian Tubules    13.2 Adult Fat Body    156.8 Adult Salivary Gland    28.1 Adult Heart    181.85 Adult VirginFemale Spermatheca    92.7 Adult InseminatedFemale Spermatheca    128 Adult Ovary    14.8 Adult Testis    45.5 Adult Male Accessory Gland    199.2 Adult Carcass    88.5 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    88.225 Larval Midgut    102.2 Larval Hindgut    185.5 Larval Malpighian Tubules    9.7 Larval Fat Body    22.5 Larval Salivary Gland    66.3 Larval Trachea    62.675 Larval Carcass    74.125 Adult Head    116.5 Adult Eye    204.5 Adult Brain    267.9 Adult Thoracic-Abdominal Ganglion    260 Adult Crop    89.1 Adult Midgut    132.3 Adult Hindgut    103.6 Adult Malpighian Tubules    13.2 Adult Fat Body    156.8 Adult Salivary Gland    28.1 Adult Heart    181.85 Adult VirginFemale Spermatheca    92.7 Adult InseminatedFemale Spermatheca    128 Adult Ovary    14.8 Adult Testis    45.5 Adult Male Accessory Gland    199.2 Adult Carcass    88.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    88.225 Larval Midgut    102.2 Larval Hindgut    185.5 Larval Malpighian Tubules    9.7 Larval Fat Body    22.5 Larval Salivary Gland    66.3 Larval Trachea    62.675 Larval Carcass    74.125 Adult Head    116.5 Adult Eye    204.5 Adult Brain    267.9 Adult Thoracic-Abdominal Ganglion    260 Adult Crop    89.1 Adult Midgut    132.3 Adult Hindgut    103.6 Adult Malpighian Tubules    13.2 Adult Fat Body    156.8 Adult Salivary Gland    28.1 Adult Heart    181.85 Adult VirginFemale Spermatheca    92.7 Adult InseminatedFemale Spermatheca    128 Adult Ovary    14.8 Adult Testis    45.5 Adult Male Accessory Gland    199.2 Adult Carcass    88.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    88.225 Larval Midgut    102.2 Larval Hindgut    185.5 Larval Malpighian Tubules    9.7 Larval Fat Body    22.5 Larval Salivary Gland    66.3 Larval Trachea    62.675 Larval Carcass    74.125 Adult Head    116.5 Adult Eye    204.5 Adult Brain    267.9 Adult Thoracic-Abdominal Ganglion    260 Adult Crop    89.1 Adult Midgut    132.3 Adult Hindgut    103.6 Adult Malpighian Tubules    13.2 Adult Fat Body    156.8 Adult Salivary Gland    28.1 Adult Heart    181.85 Adult VirginFemale Spermatheca    92.7 Adult InseminatedFemale Spermatheca    128 Adult Ovary    14.8 Adult Testis    45.5 Adult Male Accessory Gland    199.2 Adult Carcass    88.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    88.225 Larval Midgut    102.2 Larval Hindgut    185.5 Larval Malpighian Tubules    9.7 Larval Fat Body    22.5 Larval Salivary Gland    66.3 Larval Trachea    62.675 Larval Carcass    74.125 Adult Head    116.5 Adult Eye    204.5 Adult Brain    267.9 Adult Thoracic-Abdominal Ganglion    260 Adult Crop    89.1 Adult Midgut    132.3 Adult Hindgut    103.6 Adult Malpighian Tubules    13.2 Adult Fat Body    156.8 Adult Salivary Gland    28.1 Adult Heart    181.85 Adult VirginFemale Spermatheca    92.7 Adult InseminatedFemale Spermatheca    128 Adult Ovary    14.8 Adult Testis    45.5 Adult Male Accessory Gland    199.2 Adult Carcass    88.5 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    88.225 Larval Midgut    102.2 Larval Hindgut    185.5 Larval Malpighian Tubules    9.7 Larval Fat Body    22.5 Larval Salivary Gland    66.3 Larval Trachea    62.675 Larval Carcass    74.125 Adult Head    116.5 Adult Eye    204.5 Adult Brain    267.9 Adult Thoracic-Abdominal Ganglion    260 Adult Crop    89.1 Adult Midgut    132.3 Adult Hindgut    103.6 Adult Malpighian Tubules    13.2 Adult Fat Body    156.8 Adult Salivary Gland    28.1 Adult Heart    181.85 Adult VirginFemale Spermatheca    92.7 Adult InseminatedFemale Spermatheca    128 Adult Ovary    14.8 Adult Testis    45.5 Adult Male Accessory Gland    199.2 Adult Carcass    88.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    88.225 Larval Midgut    102.2 Larval Hindgut    185.5 Larval Malpighian Tubules    9.7 Larval Fat Body    22.5 Larval Salivary Gland    66.3 Larval Trachea    62.675 Larval Carcass    74.125 Adult Head    116.5 Adult Eye    204.5 Adult Brain    267.9 Adult Thoracic-Abdominal Ganglion    260 Adult Crop    89.1 Adult Midgut    132.3 Adult Hindgut    103.6 Adult Malpighian Tubules    13.2 Adult Fat Body    156.8 Adult Salivary Gland    28.1 Adult Heart    181.85 Adult VirginFemale Spermatheca    92.7 Adult InseminatedFemale Spermatheca    128 Adult Ovary    14.8 Adult Testis    45.5 Adult Male Accessory Gland    199.2 Adult Carcass    88.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    88.225 Larval Midgut    102.2 Larval Hindgut    185.5 Larval Malpighian Tubules    9.7 Larval Fat Body    22.5 Larval Salivary Gland    66.3 Larval Trachea    62.675 Larval Carcass    74.125 Adult Head    116.5 Adult Eye    204.5 Adult Brain    267.9 Adult Thoracic-Abdominal Ganglion    260 Adult Crop    89.1 Adult Midgut    132.3 Adult Hindgut    103.6 Adult Malpighian Tubules    13.2 Adult Fat Body    156.8 Adult Salivary Gland    28.1 Adult Heart    181.85 Adult VirginFemale Spermatheca    92.7 Adult InseminatedFemale Spermatheca    128 Adult Ovary    14.8 Adult Testis    45.5 Adult Male Accessory Gland    199.2 Adult Carcass    88.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    116.5   NA  Eye    204.5   NA  Brain    267.9   88.225  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    260   NA  Crop    89.1   102.2  Midgut    132.3   185.5  Hindgut    103.6   9.7  Malpighian Tubules    no informative data   22.5  Fat Body    156.8   66.3  Salivary Gland    no informative data   NA  Heart    181.85   62.675  Trachea    NA   NA  VirginFemale Spermatheca    92.7   NA  InseminatedFemale Spermatheca    128   NA  Ovary    14.8   NA  Testis    45.5   NA  Male Accessory Gland    199.2   74.125  Carcass    88.5 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    18 central nervous system, pupae P8    28 head, virgin 1-day female    29 head, virgin 4-day female    21 head, virgin 20-day female    12 head, mated 1-day female    25 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male    38 head, mated 4-day male    33 head, mated 20-day male    27 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    15 digestive system, 4-day adult    16 digestive system, 20-day adult    15 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8    37 carcass, larvae L3 wandering    9 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    11 ovary, virgin 4-day female    9 ovary, mated 4-day female    7 testis, mated 4-day male    7 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    18 central nervous system, pupae P8  (28) head, virgin 1-day female  (29) head, virgin 4-day female    21 head, virgin 20-day female    12 head, mated 1-day female    25 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male  (38) head, mated 4-day male  (33) head, mated 20-day male  (27) salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    15 digestive system, 4-day adult    16 digestive system, 20-day adult    15 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8  (37) carcass, larvae L3 wandering    9 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    11 ovary, virgin 4-day female    9 ovary, mated 4-day female    7 testis, mated 4-day male    7 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    18 central nervous system, pupae P8    28 head, virgin 1-day female    29 head, virgin 4-day female    21 head, virgin 20-day female    12 head, mated 1-day female    25 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male    38 head, mated 4-day male    33 head, mated 20-day male    27 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    15 digestive system, 4-day adult    16 digestive system, 20-day adult    15 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8    37 carcass, larvae L3 wandering    9 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    11 ovary, virgin 4-day female    9 ovary, mated 4-day female    7 testis, mated 4-day male    7 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    18 central nervous system, pupae P8    28 head, virgin 1-day female    29 head, virgin 4-day female    21 head, virgin 20-day female    12 head, mated 1-day female    25 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male    38 head, mated 4-day male    33 head, mated 20-day male    27 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    15 digestive system, 4-day adult    16 digestive system, 20-day adult    15 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8    37 carcass, larvae L3 wandering    9 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    11 ovary, virgin 4-day female    9 ovary, mated 4-day female    7 testis, mated 4-day male    7 accessory gland, mated 4-day male    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    18 central nervous system, pupae P8    28 head, virgin 1-day female    29 head, virgin 4-day female    21 head, virgin 20-day female    12 head, mated 1-day female    25 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male    38 head, mated 4-day male    33 head, mated 20-day male    27 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    15 digestive system, 4-day adult    16 digestive system, 20-day adult    15 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8    37 carcass, larvae L3 wandering    9 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    11 ovary, virgin 4-day female    9 ovary, mated 4-day female    7 testis, mated 4-day male    7 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    18 central nervous system, pupae P8  28 head, virgin 1-day female  29 head, virgin 4-day female    21 head, virgin 20-day female    12 head, mated 1-day female    25 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male  (38) head, mated 4-day male  (33) head, mated 20-day male  27 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    15 digestive system, 4-day adult    16 digestive system, 20-day adult    15 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8  (37) carcass, larvae L3 wandering    9 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    11 ovary, virgin 4-day female    9 ovary, mated 4-day female    7 testis, mated 4-day male    7 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    18 central nervous system, pupae P8    28 head, virgin 1-day female    29 head, virgin 4-day female    21 head, virgin 20-day female    12 head, mated 1-day female    25 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male    38 head, mated 4-day male    33 head, mated 20-day male    27 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    15 digestive system, 4-day adult    16 digestive system, 20-day adult    15 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8    37 carcass, larvae L3 wandering    9 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    11 ovary, virgin 4-day female    9 ovary, mated 4-day female    7 testis, mated 4-day male    7 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    7 central nervous system, larvae L3    18 central nervous system, pupae P8    28 head, virgin 1-day female    29 head, virgin 4-day female    21 head, virgin 20-day female    12 head, mated 1-day female    25 head, mated 4-day female    20 head, mated 20-day female    14 head, mated 1-day male    38 head, mated 4-day male    33 head, mated 20-day male    27 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    2 digestive system, larvae L3 wandering    9 digestive system, 1-day adult    15 digestive system, 4-day adult    16 digestive system, 20-day adult    15 fat body, larvae L3 wandering    1 fat body, white prepupae    6 fat body, pupae P8    37 carcass, larvae L3 wandering    9 carcass, 1-day adult    14 carcass, 4-day adult    15 carcass, 20-day adult    11 ovary, virgin 4-day female    9 ovary, mated 4-day female    7 testis, mated 4-day male    7 accessory gland, mated 4-day male    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 12-24 hour embryonic stages, during late pupal stages, in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    7 embryo 04-06hr    7 embryo 06-08hr    8 embryo 08-10hr    13 embryo 10-12hr    13 embryo 12-14hr    19 embryo 14-16hr    15 embryo 16-18hr    23 embryo 18-20hr    28 embryo 20-22hr    17 embryo 22-24hr    18 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    17 pupae 2d postWPP    16 pupae 3d postWPP    27 pupae 4d postWPP    14 adult male 01day    17 adult male 05day    17 adult male 30day    13 adult female 01day    9 adult female 05day    6 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    7 embryo 04-06hr    7 embryo 06-08hr    8 embryo 08-10hr    13 embryo 10-12hr    13 embryo 12-14hr    19 embryo 14-16hr    15 embryo 16-18hr    23 embryo 18-20hr  (28) embryo 20-22hr    17 embryo 22-24hr    18 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    17 pupae 2d postWPP    16 pupae 3d postWPP  (27) pupae 4d postWPP    14 adult male 01day    17 adult male 05day    17 adult male 30day    13 adult female 01day    9 adult female 05day    6 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    7 embryo 04-06hr    7 embryo 06-08hr    8 embryo 08-10hr    13 embryo 10-12hr    13 embryo 12-14hr    19 embryo 14-16hr    15 embryo 16-18hr    23 embryo 18-20hr    28 embryo 20-22hr    17 embryo 22-24hr    18 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    17 pupae 2d postWPP    16 pupae 3d postWPP    27 pupae 4d postWPP    14 adult male 01day    17 adult male 05day    17 adult male 30day    13 adult female 01day    9 adult female 05day    6 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    7 embryo 04-06hr    7 embryo 06-08hr    8 embryo 08-10hr    13 embryo 10-12hr    13 embryo 12-14hr    19 embryo 14-16hr    15 embryo 16-18hr    23 embryo 18-20hr    28 embryo 20-22hr    17 embryo 22-24hr    18 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    17 pupae 2d postWPP    16 pupae 3d postWPP    27 pupae 4d postWPP    14 adult male 01day    17 adult male 05day    17 adult male 30day    13 adult female 01day    9 adult female 05day    6 adult female 30day    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    7 embryo 04-06hr    7 embryo 06-08hr    8 embryo 08-10hr    13 embryo 10-12hr    13 embryo 12-14hr    19 embryo 14-16hr    15 embryo 16-18hr    23 embryo 18-20hr    28 embryo 20-22hr    17 embryo 22-24hr    18 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    17 pupae 2d postWPP    16 pupae 3d postWPP    27 pupae 4d postWPP    14 adult male 01day    17 adult male 05day    17 adult male 30day    13 adult female 01day    9 adult female 05day    6 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    7 embryo 04-06hr    7 embryo 06-08hr    8 embryo 08-10hr    13 embryo 10-12hr    13 embryo 12-14hr    19 embryo 14-16hr    15 embryo 16-18hr    23 embryo 18-20hr  28 embryo 20-22hr    17 embryo 22-24hr    18 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    17 pupae 2d postWPP    16 pupae 3d postWPP  27 pupae 4d postWPP    14 adult male 01day    17 adult male 05day    17 adult male 30day    13 adult female 01day    9 adult female 05day    6 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    7 embryo 04-06hr    7 embryo 06-08hr    8 embryo 08-10hr    13 embryo 10-12hr    13 embryo 12-14hr    19 embryo 14-16hr    15 embryo 16-18hr    23 embryo 18-20hr    28 embryo 20-22hr    17 embryo 22-24hr    18 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    17 pupae 2d postWPP    16 pupae 3d postWPP    27 pupae 4d postWPP    14 adult male 01day    17 adult male 05day    17 adult male 30day    13 adult female 01day    9 adult female 05day    6 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    6 embryo 02-04hr    7 embryo 04-06hr    7 embryo 06-08hr    8 embryo 08-10hr    13 embryo 10-12hr    13 embryo 12-14hr    19 embryo 14-16hr    15 embryo 16-18hr    23 embryo 18-20hr    28 embryo 20-22hr    17 embryo 22-24hr    18 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    10 white prepupae 12hr    12 white prepupae 24hr    17 pupae 2d postWPP    16 pupae 3d postWPP    27 pupae 4d postWPP    14 adult male 01day    17 adult male 05day    17 adult male 30day    13 adult female 01day    9 adult female 05day    6 adult female 30day    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    60 Schneider line 2 Sg4    42 embryonic 1182-4H    43 embryonic GM2    29 embryonic Kc167    40 embryonic S1    11 embryonic S3    75 leg disc CME L1    41 wing disc CME-W2    34 wing disc ML-DmD8    63 wing disc ML-DmD9    35 wing disc ML-DmD16-c3    68 wing disc ML-DmD21    20 wing disc ML-DmD32    121 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    31 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1    86 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    39 tumorous blood cells mbn2    80 ovary fGS/OSS    9 ovary OSC    29 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (60) Schneider line 2 Sg4  (42) embryonic 1182-4H  (43) embryonic GM2  (29) embryonic Kc167  (40) embryonic S1    11 embryonic S3  (75) leg disc CME L1  (41) wing disc CME-W2  (34) wing disc ML-DmD8  (63) wing disc ML-DmD9  (35) wing disc ML-DmD16-c3  (68) wing disc ML-DmD21    20 wing disc ML-DmD32  (121) haltere disc ML-DmD17-c3  (56) eye-antennal disc ML-DmD11  (31) antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1  (86) CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2  (39) tumorous blood cells mbn2  (80) ovary fGS/OSS    9 ovary OSC  (29) ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    60 Schneider line 2 Sg4    42 embryonic 1182-4H    43 embryonic GM2    29 embryonic Kc167    40 embryonic S1    11 embryonic S3    75 leg disc CME L1    41 wing disc CME-W2    34 wing disc ML-DmD8    63 wing disc ML-DmD9    35 wing disc ML-DmD16-c3    68 wing disc ML-DmD21    20 wing disc ML-DmD32  (121) haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    31 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1    86 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    39 tumorous blood cells mbn2    80 ovary fGS/OSS    9 ovary OSC    29 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    60 Schneider line 2 Sg4    42 embryonic 1182-4H    43 embryonic GM2    29 embryonic Kc167    40 embryonic S1    11 embryonic S3    75 leg disc CME L1    41 wing disc CME-W2    34 wing disc ML-DmD8    63 wing disc ML-DmD9    35 wing disc ML-DmD16-c3    68 wing disc ML-DmD21    20 wing disc ML-DmD32    121 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    31 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1    86 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    39 tumorous blood cells mbn2    80 ovary fGS/OSS    9 ovary OSC    29 ovary OSS    14 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    60 Schneider line 2 Sg4    42 embryonic 1182-4H    43 embryonic GM2    29 embryonic Kc167    40 embryonic S1    11 embryonic S3    75 leg disc CME L1    41 wing disc CME-W2    34 wing disc ML-DmD8    63 wing disc ML-DmD9    35 wing disc ML-DmD16-c3    68 wing disc ML-DmD21    20 wing disc ML-DmD32    121 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    31 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1    86 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    39 tumorous blood cells mbn2    80 ovary fGS/OSS    9 ovary OSC    29 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (60) Schneider line 2 Sg4  (42) embryonic 1182-4H  (43) embryonic GM2  29 embryonic Kc167  (40) embryonic S1    11 embryonic S3  (75) leg disc CME L1  (41) wing disc CME-W2  (34) wing disc ML-DmD8  (63) wing disc ML-DmD9  (35) wing disc ML-DmD16-c3  (68) wing disc ML-DmD21    20 wing disc ML-DmD32  (121) haltere disc ML-DmD17-c3  (56) eye-antennal disc ML-DmD11  31 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1  (86) CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2  (39) tumorous blood cells mbn2  (80) ovary fGS/OSS    9 ovary OSC  29 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    60 Schneider line 2 Sg4    42 embryonic 1182-4H    43 embryonic GM2    29 embryonic Kc167    40 embryonic S1    11 embryonic S3    75 leg disc CME L1    41 wing disc CME-W2    34 wing disc ML-DmD8    63 wing disc ML-DmD9    35 wing disc ML-DmD16-c3    68 wing disc ML-DmD21    20 wing disc ML-DmD32  121 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    31 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1    86 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    39 tumorous blood cells mbn2    80 ovary fGS/OSS    9 ovary OSC    29 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    60 Schneider line 2 Sg4    42 embryonic 1182-4H    43 embryonic GM2    29 embryonic Kc167    40 embryonic S1    11 embryonic S3    75 leg disc CME L1    41 wing disc CME-W2    34 wing disc ML-DmD8    63 wing disc ML-DmD9    35 wing disc ML-DmD16-c3    68 wing disc ML-DmD21    20 wing disc ML-DmD32    121 haltere disc ML-DmD17-c3    56 eye-antennal disc ML-DmD11    31 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1    86 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    39 tumorous blood cells mbn2    80 ovary fGS/OSS    9 ovary OSC    29 ovary OSS    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    5 cold shock, 4-day adult    5 heat shock, 4-day adult    7 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    8 Cadmium 100 mM 48 hrs, 4-day adult    18 Copper 0.5 mM 12 hrs, larvae L3    3 Copper 15 mM 48 hrs, 4-day adult    20 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    11 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    12 Caffeine 25 mg/ml 48 hrs, 4-day adult    7 Paraquat 5 mM 48 hrs, 4-day adult    14 Paraquat 10 mM 48 hrs, 4-day adult    14 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_29
External Data & Images
Linkouts	BDGP expression data • RE60364 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0029881 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3973-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele partially lethal - majority live pigs1 viable pigsC1 pigsEY00480 viable, with Scer\GAL4pnr-MD237 pigsGD11177 Sterility Allele female sterile pigs1 fertile pigsEY00480 Other Phenotypes Allele flightless pigs1 Phenotype manifest in Allele egg chamber pigs1 egg chamber, with Scer\GAL4en-e16E pigsGD11177 egg chamber | somatic clone pigs1 female germline stem cell | supernumerary pigs1 follicle cell pigs1 germarium pigs1 germarium cap cell | supernumerary pigs1 indirect flight muscle pigs1 interfollicle cell pigs1 interfollicle cell, with Scer\GAL4en-e16E pigsGD11177 nurse cell ring canal pigs1 ovary pigs1 polar follicle cell | supernumerary pigs1
Classical Alleles ( 13 )
For All Classical Alleles Show
Allele of pigs Class Mutagen Stocks Known lesion pigsBG00919 P-element activity 1 -- pigsd06059 1 -- pigsd10305 P-element activity 1 -- pigsEY00480 1 -- pigsf02378 piggyBac transposase 1 -- pigsf08054 piggyBac transposase 1 -- pigsGS1067 1 Yes pigsNP1005 1 -- pigsNP2748 1 -- pigs1 FLPase recombination 0 Yes pigsC1 0 Yes pigsIntron1 0 Yes pigsIntron2 0 Yes
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of pigs Class Mutagen Stocks Known lesion pigsGD11177 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes pigsFL.Scer\UAS.P\T.T:Avic\GFP in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes pigsNT.Scer\UAS.P\T.T:Avic\GFP in vitro construct - regulatory fusion in vitro construct - coding region fusion 0 Yes pigsUbi-p63E.PP in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(1)Exel6240 (Ryder, 2004.4.26) Tp(1;1)TE6BC-pigsC1 (Moschetti et al., 2004)
Partially disrupted in	Df(1)e02477-d06059 (Casad et al., 2012) Df(1)f08054-d09974 (Casad et al., 2012) Df(1)pigs1 (Pines et al., 2010)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{UASp-GFP-pigs.FL} NA P{UASp-GFP-pigs.NT} NA characterization construct P{Ubi-p63E.P} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{GT1}pigsBG00919 NA PBac{WH}pigsf02378 NA PBac{WH}pigsf08054 NA insertion of enhancer trap binary system P{GAL4}pigsIntron1 No P{GAL4}pigsIntron2 No P{GawB}pigsNP1005 No P{GawB}pigsNP2748 No insertion of mobile activating element P{EPgy2}pigsEY00480 NA P{GSV1}pigsGS1067 NA P{XP}pigsd06059 NA P{XP}pigsd10305 NA
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 5 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
negative regulation of Notch signaling pathway inferred from mutant phenotype (Pines et al., 2010) ovarian follicle cell development inferred from mutant phenotype (Pines et al., 2010) ovarian follicle cell stalk formation inferred from mutant phenotype (Pines et al., 2010)
Cellular Component
CV term Evidence References
colocalizes_with actin cytoskeleton inferred from direct assay (Pines et al., 2010) colocalizes_with cytoplasmic microtubule inferred from direct assay (Pines et al., 2010)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
cell cycle arrest inferred from electronic annotation with InterPro:IPR003108 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions pigs allele Gene References unspecified pbl (Gregory et al., 2007)
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0029881 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31596
Orthologs
OrthoDB Orthologs (37) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6DFQ6X Dipteran inclusive ortholog search EOG6F1XB4 Insect inclusive ortholog search EOG68W9ZP Arthropod inclusive ortholog search EOG6X69S0 Metazoa inclusive ortholog search EOG6XDGJ2
Orthologs in Drosophila Species (EOG6DFQ6X)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\pigs     Drosophila simulans   Dsim\GD16809 Y   Drosophila sechellia   Dsec\GM12507 Y   Drosophila erecta   Dere\GG19600 Y   Drosophila yakuba   Dyak\GE16760 Y   Drosophila ananassae   Dana\GF22269 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA17814 Y   Drosophila persimilis   Dper\GL13342 Y   Drosophila willistoni   Dwil\GK25585 Y   Drosophila virilis   Dvir\GJ16981 Y   Drosophila mojavensis   Dmoj\GI21807 Y   Drosophila grimshawi   Dgri\GH24710 Y
Orthologs in non-Drosophila Dipterans (EOG6F1XB4)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL011151   Anopheles gambiae Malaria mosquito  Agam\AGAP003901
Orthologs in non-Dipteran Insects (EOG68W9ZP)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB44254   Apis mellifera Western honey bee  Amel\GB44253   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH11693   Atta cephalotes Leafcutter ant  Acep\ACEP18976   Atta cephalotes Leafcutter ant  Acep\ACEP18975   Camponotus floridanus Florida carpenter ant  Cflo\CFLO23006   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL13245   Linepithema humile Argentine ant  Lhum\LH16074   Linepithema humile Argentine ant  Lhum\LH16075   Pogonomyrmex barbatus Red harvester ant  Pbar\PB23408   Pogonomyrmex barbatus Red harvester ant  Pbar\PB23410   Solenopsis invicta Red fire ant  Sinv\SINV17875   Acyrthosiphon pisum Pea aphid  Apim\ACYPI003221   Bombyx mori Silkmoth  Bmor\BGIBMGA013089   Pediculus humanus Human body louse  Phum\PHUM215460   Tribolium castaneum Red flour beetle  Tcas\GLEAN_15122
Orthologs in non-Insect Arthropods (EOG6X69S0)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_199461   Ixodes scapularis Deer tick  Isca\ISCW022489   Ixodes scapularis Deer tick  Isca\ISCW022488
Orthologs in non-Arthropod Metazoa (EOG6XDGJ2)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_028778gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_003697gn   Danio rerio Zebrafish  Drer\gas2l1   Xenopus tropicalis Western clawed frog  Xtro\gas2l1
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD16809 Drosophila sechellia Dsec\GM12507 Drosophila erecta Dere\GG19600 Drosophila yakuba Dyak\GE16760 Drosophila ananassae Dana\GF22269 Drosophila pseudoobscura pseudoobscura Dpse\GA17814 Drosophila persimilis Dper\GL13342 Drosophila willistoni Dwil\GK25585 Drosophila virilis Dvir\GJ16981 Drosophila mojavensis Dmoj\GI21807 Drosophila grimshawi Dgri\GH24710
Stocks & Reagents
Stocks Listed in FlyBase ( 10 )
Bloomington	12446 w1118 P{GT1}pigsBG00919 14854 y1 w67c23 P{EPgy2}pigsEY00480
Harvard	- P{XP}pigsd06059 - P{XP}pigsd10305 - PBac{WH}pigsf02378 - PBac{WH}pigsf08054
Kyoto	103854 y* w* P{GawB}pigsNP1005 / FM7c 104309 y* w* P{GawB}pigsNP2748 / FM7c 200090 y1 w67c23 P{GSV1}pigsGS1067/Binsinscy
VDRC	v34772 w1118; P{GD11177}v34772
Genomic Clones ( 2 )
	BACR11K20 BACR12B22 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 117 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE60364 RH39068 SD10270
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT03752 HL03126 HL04464 LP01317 RE63882 RE65535 RH67850
Other clones	1884 4744 5193 5987 10981 31750 63170 75271 102345 102386 119220 145241 148771 180748 192613 214217.6 214255.11 214279.10 522146 542670 558155 CK01.83C.E1 CK01.86D.B4 CK01.122C.G6 CK01.144B.H11 CK01.147B.E3 CK01.168A.G5 EK066617 EK068438 EK093405 EK094159 EK102921 EK115306 EK118732 EK120718 EK123722 EK124323 EK126943 EK188728 EK228207 EK239152 EK242624 EK252140 EK254860 EK285955 EK295646 EN13113 EP15555 EP15847 FGA011F02 FGC009H08 FGC015C09 FGM221B05 FGM325H09 RP003002204 RP003019186 RP003030662 RP003077811 RP003096301 RP003107797 RP003114686 RP003120060 RP003130247 RP003130746 RP003148867 RP003157179 RP003222790 RP003227782 RP003228831 RP003235530 RP003236770 RP003240923 RP003253146 RP003291786 RP003294027 RP003297300 RP003306415 RP003312301 RP003314411 RP003336162 RP003347301 RP003353562 RP003380045 RP003414859 RP003437396 RP003457249 RP003459153 RP003471124 RP003472517 RP003480589 RP003485911 RP003501297 RP003505578 RP003515437 RP003534281 RP003537950 RP003546048 RP003573821 RP003579787 RP003579823 RP003615876 RP003618349 RP003621220 RP003627645 RP003653581 RP003676823 RP003681017
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0029881 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31596
Antibody Information
Other Information
Discoverer
Etymology
	The gene is named "pickled eggs" based on the ovarian phenotype of mutants. (Pines et al., 2010)
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: pigs CG3973 (Pines et al., 2010)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132103 NM_001258621 RefSeq (Proteins) • NP_572331 NP_001245550 DDBJ / EMBL / GenBank • AAF46177 AAL13365 AAO39480 AFH07264 AI543495 AJ783029 AJ783030 AJ783031 AJ783032 AJ783033 AJ783034 AJ783035 AJ783036 AJ783037 AJ783038 AJ783039 AJ783040 AJ783041 AW944624 AY059459 BI373143 BT003477 CZ477204 CZ484885 CZ490751 Entrez Gene - A searchable database of RefSeq genes. • 31596 UniProtKB/TrEMBL • Q9W3Y4 Q95TD5
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Calponin homology domain (IPR001715) Growth-arrest-specific protein 2 domain (IPR003108) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE60364
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0029881 DRSC - Results from RNAi screens. • FBgn0029881 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0029881 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3973-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0029881 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31596 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31596 modMine - Data generated by the modENCODE project. • FBgn0029881
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	CG3973 (Pines et al., 2010, Gregory et al., 2007, Pines and Röper, 2007, Moschetti et al., 2004, FlyBase, 1992-, Zimmermann et al., 2006, Pauli et al., 2010) pigs (Wasbrough et al., 2010)
Name Synonym	pickled eggs (Pines et al., 2010)
Secondary FlyBase IDs
References ( 23 )
Generate a list of	All references relating to this gene ( 23 )
List References by type	Research paper  ( 7 ) Supplementary material  ( 3 ) Review  ( 1 ) Personal communication to FlyBase  ( 6 ) Abstract  ( 1 ) FlyBase analysis  ( 3 ) DNA/RNA sequence record  ( 2 )
Recent research papers ( 2 )
	Casad et al., 2012, Mol. Genet. Genomics 287(4): 351--360 Deletion of Siah-interacting protein gene in Drosophila causes cardiomyopathy. [FBrf0217871] Weber et al., 2012, PLoS ONE 7(4): e34745 Genome-Wide Association Analysis of Oxidative Stress Resistance in Drosophila melanogaster. [FBrf0218073] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...