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Gene Dmel\RpL17

General Information
Symbol	Dmel\RpL17	Species	D. melanogaster
Name	Ribosomal protein L17	Annotation symbol	CG3203
Feature type	protein_coding_gene	FlyBase ID	FBgn0029897
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	6C10-6C10	Sequence location	X:6,635,570..6,638,290 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Ribosomal protein L17 is referred to in FlyBase by the symbol Dmel\RpL17 (CG3203, FBgn0029897). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: structural constituent of ribosome. There is experimental evidence that it is involved in the biological process: mitotic spindle elongation; mitotic spindle organization; centrosome duplication. 4 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: Ribosomal protein L22/L17; Ribosomal protein L22/L17, conserved site; Ribosomal protein L22/L17, eukaryotic/archaeal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult testis. Comments on Affy2 ProbeSet: ProbeSet 1628028_s_at completely aligns to an exonic region common to each of the 4 FlyBase-annotated transcript isoforms of RpL17. Gene sequence location is X:6635570..6638290.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 6C10-6C10   Limits computationally determined from genome sequence between P{EP}Ctr1AEP1364&P{EP}EP1445 and P{EP}C3GEP1613
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\RpL17 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Low-frequency RNA-Seq exon junction(s) not annotated. Annotated transcripts do not represent all supported alternative splices within 5' UTR. Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) RpL17-RA FBtr0070983  NM_167087   837   186 RpL17-RB FBtr0070980  NM_167088   873   186 RpL17-RC FBtr0070981  NM_167089   941   186 RpL17-RD FBtr0070982  NM_132118   1100   186
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein RpL17-PA   FBpp0070943   21.6   186   10.99     NP_727118   AAF46195 RpL17-PB   FBpp0070940   21.6   186   10.99     NP_727119   AAN09182 RpL17-PC   FBpp0070941   21.6   186   10.99     NP_727120   AAF46194 RpL17-PD   FBpp0070942   21.6   186   10.99     NP_572346   AAN09183
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein L22/L17, conserved site (IPR018260) Ribosomal protein L22/L17 (IPR001063) Ribosomal protein L22/L17, eukaryotic/archaeal (IPR005721)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA246692   AA264590   AA392338   AA439697   AA567263   AA567302   AA696146   AA696386   AA696437   AA697252   AA736087   AA736111   AA736176   AA802062   AA803538   AA803564   AA803659   AA803958   AA803972   AA817153   AA821169   AA940660   AA941247   AA949341   AA949875   AA950278   AA950359   AA950722   AA950961   AE014298 AAF46194   AE014298 AAF46195   AE014298 AAN09182   AE014298 AAN09183   AF083294   AI062731   AI062800   AI064425   AI106692   AI135301   AI135468   AI238014   AI238242   AI257551   AI260930   AI293305   AI293713   AI295543   AI296248   AI296760   AI388443   AI389325   AI402850   AI403184   AI403592   AI404423   AI404458   AI404576   AI405221   AI405758   AI455784   AI456330   AI511959   AI513416   AI515255   AI515714   AI515993   AI517338   AI518000   AI518326   AI519235   AI520479   AI531520   AI542065   AK283679   AW941928   AY060845 AAL28393   AY231666   AY232017   AY439417   AY826144   BF493885   BG633359   BG636543   BG636631   BG637185   BG637380   BG638510   BG639254   BG639380   BG640132   BG640515   BI162319   BI162320   BI162975   BI162985   BI163023   BI164121   BI164826   BI171612   BI173487   BI213986   BI216504   BI234401   BI234866   BI236570   BI236769   BI236781   BI351626   BI351905   BI352299   BI352407   BI352493   BI352837   BI352868   BI353152   BI353206   BI353245   BI353339   BI353749   BI353784   BI353972   BI354079   BI354203   BI354596   BI354871   BI354970   BI355031   BI355065   BI355152   BI357799   BI361987   BI366287   BI370068   BI370077   BI370652   BI371189   BI374737   BI375413   BI486954   BI564650   BI565352   BI565741   BI566241   BI566456   BI566828   BI566907   BI567594   BI567699   BI567791   BI568080   BI568213   BI568290   BI568585   BI570542   BI570874   BI571719   BI571814   BI572568   BI572797   BI573176   BI573177   BI574239   BI574709   BI574719   BI574912   BI575753   BI576001   BI576088   BI576437   BI576480   BI576823   BI580356   BI581658   BI582323   BI582523   BI582790   BI584267   BI584430   BI584763   BI585535   BI585986   BI586503   BI587064   BI587293   BI589105   BI589400   BI590493   BI590814   BI591091   BI591556   BI591620   BI592817   BI593109   BI604333   BI605618   BI605901   BI605996   BI606048   BI606429   BI606971   BI608771   BI609198   BI609454   BI609460   BI609723   BI609941   BI612104   BI612350   BI612819   BI614148   BI614694   BI615538   BI616754   BI617300   BI617336   BI618617   BI618796   BI618801   BI618869   BI618921   BI619695   BI619880   BI620478   BI620607   BI620672   BI620784   BI621022   BI621094   BI622144   BI622286   BI622295   BI622297   BI622400   BI623094   BI623146   BI623578   BI623613   BI623715   BI623734   BI623922   BI624189   BI624191   BI624693   BI624744   BI626093   BI626120   BI626825   BI627961   BI629074   BI629102   BI629133   BI629370   BI629501   BI629825   BI630207   BI630315   BI631388   BI631723   BI631791   BI631909   BI631924   BI631928   BI632715   BI635426   BI635793   BI636353   BI637408   BI637622   BI637937   BI638107   BI638455   BI638551   BI638654   BI638821   BI639245   BI639422   BI639454   BI639520   BI640407   BI641958   BP541207   BP542012   BP546632   BP548339   BP549757   BP549758   BP550109   BP550110   BP550482   BP550615   BP551224   BP551225   BP552746   BP552747   BP554033   BP554034   BP554563   BP554564   BP555823   BP557129   BP557130   BP558826   BP558827   BP559095   BP559096   BQ102830   BQ102995   BQ103573   BX006192   BX006285   BX006721   BX007837   BX008885   BX010848   BX014670   BX015112   BX017968   BX018947   BX022019   BX023237   BX025125   BX025977   BX030139   BX030409   BX030951   BX031235   BX032768   BX035169   BX035435   BX035571   BX037857   BX037869   BX037920   BX038121   BX038372   BX040690   BX043819   BX049636   BX055667   BX056962   BX072322   BX072427   CA804915   CA806004   CK132340   CK132471   CK604597   CK604598   CK604725   CK604726   CK604731   CK604732   CK604960   CK604961   CK605126   CK605127   CK605283   CK605284   CK605465   CK605466   CK605490   CK605491   CK657112   CK657254   CK657262   CK658230   CK658427   CK659429   CK659741   CK660001   CK660132   CK660713   CK660953   CK661001   CK661503   CK662316   CO152818   CO152930   CO153297   CO153895   CO154051   CO155662   CO156003   CO156287   CO156583   CO180822   CO180986   CO191743   CO192576   CO193654   CO195162   CO195277   CO195446   CO195574   CO283855   CO293658   CO296964   CO297117   CO304891   CO307983   CO316877   CO323353   CO329936   CO330237   CO332033   CO336090   CO336099   CO336153   CO336509   CO336604   CO337266   CO337296   CO337701   CO338013   CO338125   CO338510   CO338572   CR938081   CR938529   DQ440229   EC051807   EC063051   EC064420   EC075266   EC077602   EC078003   EC216580   EC226378   EC237739   EC247715   EC261610   EC261737   EC262080   EC262357   EC263048   EC263410   EC263454   EC263512   EC263610   EC263713   EC263900   EC263936   EC264152   EC264281   EC264812   EC265089   EC265536   EC265963   EC267145   EC267264   EC267483   EC267770   EC267903   EL869943   EL885670   EV575308   EV575582   EV576187   EV577288   EV578174   EV578885   EV579337   EV579673   EV579690   EV580637   EV580851   EV581159   EV583987   EV584011   EV584125   EV585784   EV587223   EV597678
UniProtKB/Swiss-Prot	Q9W3W8
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2000.4 Larval Midgut    2762.9 Larval Hindgut    2999.5 Larval Malpighian Tubules    2942 Larval Fat Body    4067 Larval Salivary Gland    5368.5 Larval Trachea    4758.6 Larval Carcass    3550.35 Adult Head    3226 Adult Eye    4058.175 Adult Brain    2103.3 Adult Thoracic-Abdominal Ganglion    2918.7 Adult Crop    4023.7 Adult Midgut    3686.1 Adult Hindgut    3625.2 Adult Malpighian Tubules    3494.9 Adult Fat Body    4024.9 Adult Salivary Gland    4681.1 Adult Heart    4601.825 Adult VirginFemale Spermatheca    3971.4 Adult InseminatedFemale Spermatheca    4159.5 Adult Ovary    2488.8 Adult Testis    397 Adult Male Accessory Gland    6386.8 Adult Carcass    3835.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2000.4) Larval Midgut  (2762.9) Larval Hindgut  (2999.5) Larval Malpighian Tubules  (2942) Larval Fat Body  (4067) Larval Salivary Gland  (5368.5) Larval Trachea  (4758.6) Larval Carcass  (3550.35) Adult Head  (3226) Adult Eye  (4058.175) Adult Brain  (2103.3) Adult Thoracic-Abdominal Ganglion  (2918.7) Adult Crop  (4023.7) Adult Midgut  (3686.1) Adult Hindgut  (3625.2) Adult Malpighian Tubules  (3494.9) Adult Fat Body  (4024.9) Adult Salivary Gland  (4681.1) Adult Heart  (4601.825) Adult VirginFemale Spermatheca  (3971.4) Adult InseminatedFemale Spermatheca  (4159.5) Adult Ovary  (2488.8) Adult Testis    397 Adult Male Accessory Gland  (6386.8) Adult Carcass  (3835.9) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2000.4) Larval Midgut  (2762.9) Larval Hindgut  (2999.5) Larval Malpighian Tubules  (2942) Larval Fat Body  (4067) Larval Salivary Gland  (5368.5) Larval Trachea  (4758.6) Larval Carcass  (3550.35) Adult Head  (3226) Adult Eye  (4058.175) Adult Brain  (2103.3) Adult Thoracic-Abdominal Ganglion  (2918.7) Adult Crop  (4023.7) Adult Midgut  (3686.1) Adult Hindgut  (3625.2) Adult Malpighian Tubules  (3494.9) Adult Fat Body  (4024.9) Adult Salivary Gland  (4681.1) Adult Heart  (4601.825) Adult VirginFemale Spermatheca  (3971.4) Adult InseminatedFemale Spermatheca  (4159.5) Adult Ovary  (2488.8) Adult Testis    397 Adult Male Accessory Gland  (6386.8) Adult Carcass  (3835.9) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2000.4 Larval Midgut    2762.9 Larval Hindgut    2999.5 Larval Malpighian Tubules    2942 Larval Fat Body    4067 Larval Salivary Gland    5368.5 Larval Trachea    4758.6 Larval Carcass    3550.35 Adult Head    3226 Adult Eye    4058.175 Adult Brain    2103.3 Adult Thoracic-Abdominal Ganglion    2918.7 Adult Crop    4023.7 Adult Midgut    3686.1 Adult Hindgut    3625.2 Adult Malpighian Tubules    3494.9 Adult Fat Body    4024.9 Adult Salivary Gland    4681.1 Adult Heart    4601.825 Adult VirginFemale Spermatheca    3971.4 Adult InseminatedFemale Spermatheca    4159.5 Adult Ovary    2488.8 Adult Testis    397 Adult Male Accessory Gland    6386.8 Adult Carcass    3835.9 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2000.4 Larval Midgut    2762.9 Larval Hindgut    2999.5 Larval Malpighian Tubules    2942 Larval Fat Body    4067 Larval Salivary Gland    5368.5 Larval Trachea    4758.6 Larval Carcass    3550.35 Adult Head    3226 Adult Eye    4058.175 Adult Brain    2103.3 Adult Thoracic-Abdominal Ganglion    2918.7 Adult Crop    4023.7 Adult Midgut    3686.1 Adult Hindgut    3625.2 Adult Malpighian Tubules    3494.9 Adult Fat Body    4024.9 Adult Salivary Gland    4681.1 Adult Heart    4601.825 Adult VirginFemale Spermatheca    3971.4 Adult InseminatedFemale Spermatheca    4159.5 Adult Ovary    2488.8 Adult Testis    397 Adult Male Accessory Gland    6386.8 Adult Carcass    3835.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2000.4) Larval Midgut  (2762.9) Larval Hindgut  (2999.5) Larval Malpighian Tubules  (2942) Larval Fat Body  (4067) Larval Salivary Gland  (5368.5) Larval Trachea  (4758.6) Larval Carcass  (3550.35) Adult Head  (3226) Adult Eye  (4058.175) Adult Brain  (2103.3) Adult Thoracic-Abdominal Ganglion  (2918.7) Adult Crop  (4023.7) Adult Midgut  (3686.1) Adult Hindgut  (3625.2) Adult Malpighian Tubules  (3494.9) Adult Fat Body  (4024.9) Adult Salivary Gland  (4681.1) Adult Heart  (4601.825) Adult VirginFemale Spermatheca  (3971.4) Adult InseminatedFemale Spermatheca  (4159.5) Adult Ovary  (2488.8) Adult Testis    397 Adult Male Accessory Gland  (6386.8) Adult Carcass  (3835.9) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2000.4) Larval Midgut  (2762.9) Larval Hindgut  (2999.5) Larval Malpighian Tubules  (2942) Larval Fat Body  (4067) Larval Salivary Gland  (5368.5) Larval Trachea  (4758.6) Larval Carcass  (3550.35) Adult Head  (3226) Adult Eye  (4058.175) Adult Brain  (2103.3) Adult Thoracic-Abdominal Ganglion  (2918.7) Adult Crop  (4023.7) Adult Midgut  (3686.1) Adult Hindgut  (3625.2) Adult Malpighian Tubules  (3494.9) Adult Fat Body  (4024.9) Adult Salivary Gland  (4681.1) Adult Heart  (4601.825) Adult VirginFemale Spermatheca  (3971.4) Adult InseminatedFemale Spermatheca  (4159.5) Adult Ovary  (2488.8) Adult Testis    397 Adult Male Accessory Gland  (6386.8) Adult Carcass  (3835.9) Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2000.4 Larval Midgut    2762.9 Larval Hindgut    2999.5 Larval Malpighian Tubules    2942 Larval Fat Body    4067 Larval Salivary Gland    5368.5 Larval Trachea    4758.6 Larval Carcass    3550.35 Adult Head    3226 Adult Eye    4058.175 Adult Brain    2103.3 Adult Thoracic-Abdominal Ganglion    2918.7 Adult Crop    4023.7 Adult Midgut    3686.1 Adult Hindgut    3625.2 Adult Malpighian Tubules    3494.9 Adult Fat Body    4024.9 Adult Salivary Gland    4681.1 Adult Heart    4601.825 Adult VirginFemale Spermatheca    3971.4 Adult InseminatedFemale Spermatheca    4159.5 Adult Ovary    2488.8 Adult Testis    397 Adult Male Accessory Gland    6386.8 Adult Carcass    3835.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    3226   NA  Eye    4058.175   NA  Brain    2103.3   2000.4  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    2918.7   NA  Crop    4023.7   2762.9  Midgut    3686.1   2999.5  Hindgut    3625.2   2942  Malpighian Tubules    3494.9   4067  Fat Body    4024.9   5368.5  Salivary Gland    4681.1   NA  Heart    4601.825   4758.6  Trachea    NA   NA  VirginFemale Spermatheca    3971.4   NA  InseminatedFemale Spermatheca    4159.5   NA  Ovary    2488.8   NA  Testis    397   NA  Male Accessory Gland    6386.8   3550.35  Carcass    3835.9 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    649 central nervous system, larvae L3    344 central nervous system, pupae P8    179 head, virgin 1-day female    206 head, virgin 4-day female    338 head, virgin 20-day female    463 head, mated 1-day female    200 head, mated 4-day female    236 head, mated 20-day female    390 head, mated 1-day male    256 head, mated 4-day male    169 head, mated 20-day male    215 salivary gland, larvae L3 wandering    168 salivary gland, white prepupae    416 digestive system, larvae L3 wandering    352 digestive system, 1-day adult    305 digestive system, 4-day adult    230 digestive system, 20-day adult    311 fat body, larvae L3 wandering    310 fat body, white prepupae    212 fat body, pupae P8    553 carcass, larvae L3 wandering    412 carcass, 1-day adult    237 carcass, 4-day adult    270 carcass, 20-day adult    375 ovary, virgin 4-day female    392 ovary, mated 4-day female    376 testis, mated 4-day male    143 accessory gland, mated 4-day male    339 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (649) central nervous system, larvae L3  (344) central nervous system, pupae P8  (179) head, virgin 1-day female  (206) head, virgin 4-day female  (338) head, virgin 20-day female  (463) head, mated 1-day female  (200) head, mated 4-day female  (236) head, mated 20-day female  (390) head, mated 1-day male  (256) head, mated 4-day male  (169) head, mated 20-day male  (215) salivary gland, larvae L3 wandering  (168) salivary gland, white prepupae  (416) digestive system, larvae L3 wandering  (352) digestive system, 1-day adult  (305) digestive system, 4-day adult  (230) digestive system, 20-day adult  (311) fat body, larvae L3 wandering  (310) fat body, white prepupae  (212) fat body, pupae P8  (553) carcass, larvae L3 wandering  (412) carcass, 1-day adult  (237) carcass, 4-day adult  (270) carcass, 20-day adult  (375) ovary, virgin 4-day female  (392) ovary, mated 4-day female  (376) testis, mated 4-day male  (143) accessory gland, mated 4-day male  (339) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (649) central nervous system, larvae L3  (344) central nervous system, pupae P8  (179) head, virgin 1-day female  (206) head, virgin 4-day female  (338) head, virgin 20-day female  (463) head, mated 1-day female  (200) head, mated 4-day female  (236) head, mated 20-day female  (390) head, mated 1-day male  (256) head, mated 4-day male  (169) head, mated 20-day male  (215) salivary gland, larvae L3 wandering  (168) salivary gland, white prepupae  (416) digestive system, larvae L3 wandering  (352) digestive system, 1-day adult  (305) digestive system, 4-day adult  (230) digestive system, 20-day adult  (311) fat body, larvae L3 wandering  (310) fat body, white prepupae  (212) fat body, pupae P8  (553) carcass, larvae L3 wandering  (412) carcass, 1-day adult  (237) carcass, 4-day adult  (270) carcass, 20-day adult  (375) ovary, virgin 4-day female  (392) ovary, mated 4-day female  (376) testis, mated 4-day male  (143) accessory gland, mated 4-day male  (339) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    649 central nervous system, larvae L3    344 central nervous system, pupae P8    179 head, virgin 1-day female    206 head, virgin 4-day female    338 head, virgin 20-day female    463 head, mated 1-day female    200 head, mated 4-day female    236 head, mated 20-day female    390 head, mated 1-day male    256 head, mated 4-day male    169 head, mated 20-day male    215 salivary gland, larvae L3 wandering    168 salivary gland, white prepupae    416 digestive system, larvae L3 wandering    352 digestive system, 1-day adult    305 digestive system, 4-day adult    230 digestive system, 20-day adult    311 fat body, larvae L3 wandering    310 fat body, white prepupae    212 fat body, pupae P8    553 carcass, larvae L3 wandering    412 carcass, 1-day adult    237 carcass, 4-day adult    270 carcass, 20-day adult    375 ovary, virgin 4-day female    392 ovary, mated 4-day female    376 testis, mated 4-day male    143 accessory gland, mated 4-day male    339 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    649 central nervous system, larvae L3    344 central nervous system, pupae P8    179 head, virgin 1-day female    206 head, virgin 4-day female    338 head, virgin 20-day female    463 head, mated 1-day female    200 head, mated 4-day female    236 head, mated 20-day female    390 head, mated 1-day male    256 head, mated 4-day male    169 head, mated 20-day male    215 salivary gland, larvae L3 wandering    168 salivary gland, white prepupae    416 digestive system, larvae L3 wandering    352 digestive system, 1-day adult    305 digestive system, 4-day adult    230 digestive system, 20-day adult    311 fat body, larvae L3 wandering    310 fat body, white prepupae    212 fat body, pupae P8    553 carcass, larvae L3 wandering    412 carcass, 1-day adult    237 carcass, 4-day adult    270 carcass, 20-day adult    375 ovary, virgin 4-day female    392 ovary, mated 4-day female    376 testis, mated 4-day male    143 accessory gland, mated 4-day male    339 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (649) central nervous system, larvae L3  (344) central nervous system, pupae P8  (179) head, virgin 1-day female  (206) head, virgin 4-day female  (338) head, virgin 20-day female  (463) head, mated 1-day female  (200) head, mated 4-day female  (236) head, mated 20-day female  (390) head, mated 1-day male  (256) head, mated 4-day male  (169) head, mated 20-day male  (215) salivary gland, larvae L3 wandering  (168) salivary gland, white prepupae  (416) digestive system, larvae L3 wandering  (352) digestive system, 1-day adult  (305) digestive system, 4-day adult  (230) digestive system, 20-day adult  (311) fat body, larvae L3 wandering  (310) fat body, white prepupae  (212) fat body, pupae P8  (553) carcass, larvae L3 wandering  (412) carcass, 1-day adult  (237) carcass, 4-day adult  (270) carcass, 20-day adult  (375) ovary, virgin 4-day female  (392) ovary, mated 4-day female  (376) testis, mated 4-day male  (143) accessory gland, mated 4-day male  (339) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (649) central nervous system, larvae L3  (344) central nervous system, pupae P8  (179) head, virgin 1-day female  (206) head, virgin 4-day female  (338) head, virgin 20-day female  (463) head, mated 1-day female  (200) head, mated 4-day female  (236) head, mated 20-day female  (390) head, mated 1-day male  (256) head, mated 4-day male  (169) head, mated 20-day male  (215) salivary gland, larvae L3 wandering  (168) salivary gland, white prepupae  (416) digestive system, larvae L3 wandering  (352) digestive system, 1-day adult  (305) digestive system, 4-day adult  (230) digestive system, 20-day adult  (311) fat body, larvae L3 wandering  (310) fat body, white prepupae  (212) fat body, pupae P8  (553) carcass, larvae L3 wandering  (412) carcass, 1-day adult  (237) carcass, 4-day adult  (270) carcass, 20-day adult  (375) ovary, virgin 4-day female  (392) ovary, mated 4-day female  (376) testis, mated 4-day male  143 accessory gland, mated 4-day male  (339) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    649 central nervous system, larvae L3    344 central nervous system, pupae P8    179 head, virgin 1-day female    206 head, virgin 4-day female    338 head, virgin 20-day female    463 head, mated 1-day female    200 head, mated 4-day female    236 head, mated 20-day female    390 head, mated 1-day male    256 head, mated 4-day male    169 head, mated 20-day male    215 salivary gland, larvae L3 wandering    168 salivary gland, white prepupae    416 digestive system, larvae L3 wandering    352 digestive system, 1-day adult    305 digestive system, 4-day adult    230 digestive system, 20-day adult    311 fat body, larvae L3 wandering    310 fat body, white prepupae    212 fat body, pupae P8    553 carcass, larvae L3 wandering    412 carcass, 1-day adult    237 carcass, 4-day adult    270 carcass, 20-day adult    375 ovary, virgin 4-day female    392 ovary, mated 4-day female    376 testis, mated 4-day male    143 accessory gland, mated 4-day male    339 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very high expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1480 embryo 02-04hr    2270 embryo 04-06hr    1884 embryo 06-08hr    2072 embryo 08-10hr    2198 embryo 10-12hr    2779 embryo 12-14hr    1438 embryo 14-16hr    2812 embryo 16-18hr    2014 embryo 18-20hr    2378 embryo 20-22hr    2388 embryo 22-24hr    1723 larva L1    2891 larva L2    2198 larva L3 12hr old    1780 larva L3 puffstage 1-2    1473 larva L3 puffstage 3-6    1402 larva L3 puffstage 7-9    1260 white prepupae new    1149 white prepupae 12hr    1129 white prepupae 24hr    1100 pupae 2d postWPP    951 pupae 3d postWPP    758 pupae 4d postWPP    1194 adult male 01day    756 adult male 05day    792 adult male 30day    980 adult female 01day    2051 adult female 05day    1469 adult female 30day    1589 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1480) embryo 02-04hr  (2270) embryo 04-06hr  (1884) embryo 06-08hr  (2072) embryo 08-10hr  (2198) embryo 10-12hr  (2779) embryo 12-14hr  (1438) embryo 14-16hr  (2812) embryo 16-18hr  (2014) embryo 18-20hr  (2378) embryo 20-22hr  (2388) embryo 22-24hr  (1723) larva L1  (2891) larva L2  (2198) larva L3 12hr old  (1780) larva L3 puffstage 1-2  (1473) larva L3 puffstage 3-6  (1402) larva L3 puffstage 7-9  (1260) white prepupae new  (1149) white prepupae 12hr  (1129) white prepupae 24hr  (1100) pupae 2d postWPP  (951) pupae 3d postWPP  (758) pupae 4d postWPP  (1194) adult male 01day  (756) adult male 05day  (792) adult male 30day  (980) adult female 01day  (2051) adult female 05day  (1469) adult female 30day  (1589) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (1480) embryo 02-04hr  (2270) embryo 04-06hr  (1884) embryo 06-08hr  (2072) embryo 08-10hr  (2198) embryo 10-12hr  (2779) embryo 12-14hr  (1438) embryo 14-16hr  (2812) embryo 16-18hr  (2014) embryo 18-20hr  (2378) embryo 20-22hr  (2388) embryo 22-24hr  (1723) larva L1  (2891) larva L2  (2198) larva L3 12hr old  (1780) larva L3 puffstage 1-2  (1473) larva L3 puffstage 3-6  (1402) larva L3 puffstage 7-9  (1260) white prepupae new  (1149) white prepupae 12hr  (1129) white prepupae 24hr  (1100) pupae 2d postWPP  (951) pupae 3d postWPP  (758) pupae 4d postWPP  (1194) adult male 01day  (756) adult male 05day  (792) adult male 30day  (980) adult female 01day  (2051) adult female 05day  (1469) adult female 30day  (1589) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1480 embryo 02-04hr    2270 embryo 04-06hr    1884 embryo 06-08hr    2072 embryo 08-10hr    2198 embryo 10-12hr    2779 embryo 12-14hr    1438 embryo 14-16hr    2812 embryo 16-18hr    2014 embryo 18-20hr    2378 embryo 20-22hr    2388 embryo 22-24hr    1723 larva L1    2891 larva L2    2198 larva L3 12hr old    1780 larva L3 puffstage 1-2    1473 larva L3 puffstage 3-6    1402 larva L3 puffstage 7-9    1260 white prepupae new    1149 white prepupae 12hr    1129 white prepupae 24hr    1100 pupae 2d postWPP    951 pupae 3d postWPP    758 pupae 4d postWPP    1194 adult male 01day    756 adult male 05day    792 adult male 30day    980 adult female 01day    2051 adult female 05day    1469 adult female 30day    1589 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1480 embryo 02-04hr    2270 embryo 04-06hr    1884 embryo 06-08hr    2072 embryo 08-10hr    2198 embryo 10-12hr    2779 embryo 12-14hr    1438 embryo 14-16hr    2812 embryo 16-18hr    2014 embryo 18-20hr    2378 embryo 20-22hr    2388 embryo 22-24hr    1723 larva L1    2891 larva L2    2198 larva L3 12hr old    1780 larva L3 puffstage 1-2    1473 larva L3 puffstage 3-6    1402 larva L3 puffstage 7-9    1260 white prepupae new    1149 white prepupae 12hr    1129 white prepupae 24hr    1100 pupae 2d postWPP    951 pupae 3d postWPP    758 pupae 4d postWPP    1194 adult male 01day    756 adult male 05day    792 adult male 30day    980 adult female 01day    2051 adult female 05day    1469 adult female 30day    1589 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1480) embryo 02-04hr  (2270) embryo 04-06hr  (1884) embryo 06-08hr  (2072) embryo 08-10hr  (2198) embryo 10-12hr  (2779) embryo 12-14hr  (1438) embryo 14-16hr  (2812) embryo 16-18hr  (2014) embryo 18-20hr  (2378) embryo 20-22hr  (2388) embryo 22-24hr  (1723) larva L1  (2891) larva L2  (2198) larva L3 12hr old  (1780) larva L3 puffstage 1-2  (1473) larva L3 puffstage 3-6  (1402) larva L3 puffstage 7-9  (1260) white prepupae new  (1149) white prepupae 12hr  (1129) white prepupae 24hr  (1100) pupae 2d postWPP  (951) pupae 3d postWPP  (758) pupae 4d postWPP  (1194) adult male 01day  (756) adult male 05day  (792) adult male 30day  (980) adult female 01day  (2051) adult female 05day  (1469) adult female 30day  (1589) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (1480) embryo 02-04hr  (2270) embryo 04-06hr  (1884) embryo 06-08hr  (2072) embryo 08-10hr  (2198) embryo 10-12hr  (2779) embryo 12-14hr  (1438) embryo 14-16hr  (2812) embryo 16-18hr  (2014) embryo 18-20hr  (2378) embryo 20-22hr  (2388) embryo 22-24hr  (1723) larva L1  (2891) larva L2  (2198) larva L3 12hr old  (1780) larva L3 puffstage 1-2  (1473) larva L3 puffstage 3-6  (1402) larva L3 puffstage 7-9  (1260) white prepupae new  (1149) white prepupae 12hr  (1129) white prepupae 24hr  (1100) pupae 2d postWPP  (951) pupae 3d postWPP  (758) pupae 4d postWPP  (1194) adult male 01day  (756) adult male 05day  (792) adult male 30day  (980) adult female 01day  (2051) adult female 05day  (1469) adult female 30day  (1589) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1480 embryo 02-04hr    2270 embryo 04-06hr    1884 embryo 06-08hr    2072 embryo 08-10hr    2198 embryo 10-12hr    2779 embryo 12-14hr    1438 embryo 14-16hr    2812 embryo 16-18hr    2014 embryo 18-20hr    2378 embryo 20-22hr    2388 embryo 22-24hr    1723 larva L1    2891 larva L2    2198 larva L3 12hr old    1780 larva L3 puffstage 1-2    1473 larva L3 puffstage 3-6    1402 larva L3 puffstage 7-9    1260 white prepupae new    1149 white prepupae 12hr    1129 white prepupae 24hr    1100 pupae 2d postWPP    951 pupae 3d postWPP    758 pupae 4d postWPP    1194 adult male 01day    756 adult male 05day    792 adult male 30day    980 adult female 01day    2051 adult female 05day    1469 adult female 30day    1589 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    527 Schneider line 2 Sg4    595 embryonic 1182-4H    771 embryonic GM2    354 embryonic Kc167    306 embryonic S1    484 embryonic S3    422 leg disc CME L1    648 wing disc CME-W2    388 wing disc ML-DmD8    790 wing disc ML-DmD9    775 wing disc ML-DmD16-c3    546 wing disc ML-DmD21    1483 wing disc ML-DmD32    836 haltere disc ML-DmD17-c3    430 eye-antennal disc ML-DmD11    1107 antennal disc ML-DmD20-c5    885 mixed discs ML-DmD4-c1    582 CNS ML-DmBG1-c1    568 CNS ML-DmBG2-c2    389 tumorous blood cells mbn2    394 ovary fGS/OSS    581 ovary OSC    224 ovary OSS    123 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (527) Schneider line 2 Sg4  (595) embryonic 1182-4H  (771) embryonic GM2  (354) embryonic Kc167  (306) embryonic S1  (484) embryonic S3  (422) leg disc CME L1  (648) wing disc CME-W2  (388) wing disc ML-DmD8  (790) wing disc ML-DmD9  (775) wing disc ML-DmD16-c3  (546) wing disc ML-DmD21  (1483) wing disc ML-DmD32  (836) haltere disc ML-DmD17-c3  (430) eye-antennal disc ML-DmD11  (1107) antennal disc ML-DmD20-c5  (885) mixed discs ML-DmD4-c1  (582) CNS ML-DmBG1-c1  (568) CNS ML-DmBG2-c2  (389) tumorous blood cells mbn2  (394) ovary fGS/OSS  (581) ovary OSC  (224) ovary OSS  (123) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (527) Schneider line 2 Sg4  (595) embryonic 1182-4H  (771) embryonic GM2  (354) embryonic Kc167  (306) embryonic S1  (484) embryonic S3  (422) leg disc CME L1  (648) wing disc CME-W2  (388) wing disc ML-DmD8  (790) wing disc ML-DmD9  (775) wing disc ML-DmD16-c3  (546) wing disc ML-DmD21  (1483) wing disc ML-DmD32  (836) haltere disc ML-DmD17-c3  (430) eye-antennal disc ML-DmD11  (1107) antennal disc ML-DmD20-c5  (885) mixed discs ML-DmD4-c1  (582) CNS ML-DmBG1-c1  (568) CNS ML-DmBG2-c2  (389) tumorous blood cells mbn2  (394) ovary fGS/OSS  (581) ovary OSC  (224) ovary OSS  (123) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    527 Schneider line 2 Sg4    595 embryonic 1182-4H    771 embryonic GM2    354 embryonic Kc167    306 embryonic S1    484 embryonic S3    422 leg disc CME L1    648 wing disc CME-W2    388 wing disc ML-DmD8    790 wing disc ML-DmD9    775 wing disc ML-DmD16-c3    546 wing disc ML-DmD21    1483 wing disc ML-DmD32    836 haltere disc ML-DmD17-c3    430 eye-antennal disc ML-DmD11    1107 antennal disc ML-DmD20-c5    885 mixed discs ML-DmD4-c1    582 CNS ML-DmBG1-c1    568 CNS ML-DmBG2-c2    389 tumorous blood cells mbn2    394 ovary fGS/OSS    581 ovary OSC    224 ovary OSS    123 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    527 Schneider line 2 Sg4    595 embryonic 1182-4H    771 embryonic GM2    354 embryonic Kc167    306 embryonic S1    484 embryonic S3    422 leg disc CME L1    648 wing disc CME-W2    388 wing disc ML-DmD8    790 wing disc ML-DmD9    775 wing disc ML-DmD16-c3    546 wing disc ML-DmD21    1483 wing disc ML-DmD32    836 haltere disc ML-DmD17-c3    430 eye-antennal disc ML-DmD11    1107 antennal disc ML-DmD20-c5    885 mixed discs ML-DmD4-c1    582 CNS ML-DmBG1-c1    568 CNS ML-DmBG2-c2    389 tumorous blood cells mbn2    394 ovary fGS/OSS    581 ovary OSC    224 ovary OSS    123 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (527) Schneider line 2 Sg4  (595) embryonic 1182-4H  (771) embryonic GM2  (354) embryonic Kc167  (306) embryonic S1  (484) embryonic S3  (422) leg disc CME L1  (648) wing disc CME-W2  (388) wing disc ML-DmD8  (790) wing disc ML-DmD9  (775) wing disc ML-DmD16-c3  (546) wing disc ML-DmD21  (1483) wing disc ML-DmD32  (836) haltere disc ML-DmD17-c3  (430) eye-antennal disc ML-DmD11  (1107) antennal disc ML-DmD20-c5  (885) mixed discs ML-DmD4-c1  (582) CNS ML-DmBG1-c1  (568) CNS ML-DmBG2-c2  (389) tumorous blood cells mbn2  (394) ovary fGS/OSS  (581) ovary OSC  (224) ovary OSS  (123) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (527) Schneider line 2 Sg4  (595) embryonic 1182-4H  (771) embryonic GM2  (354) embryonic Kc167  (306) embryonic S1  (484) embryonic S3  (422) leg disc CME L1  (648) wing disc CME-W2  (388) wing disc ML-DmD8  (790) wing disc ML-DmD9  (775) wing disc ML-DmD16-c3  (546) wing disc ML-DmD21  (1483) wing disc ML-DmD32  (836) haltere disc ML-DmD17-c3  (430) eye-antennal disc ML-DmD11  (1107) antennal disc ML-DmD20-c5  (885) mixed discs ML-DmD4-c1  (582) CNS ML-DmBG1-c1  (568) CNS ML-DmBG2-c2  (389) tumorous blood cells mbn2  (394) ovary fGS/OSS  (581) ovary OSC  (224) ovary OSS  123 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    527 Schneider line 2 Sg4    595 embryonic 1182-4H    771 embryonic GM2    354 embryonic Kc167    306 embryonic S1    484 embryonic S3    422 leg disc CME L1    648 wing disc CME-W2    388 wing disc ML-DmD8    790 wing disc ML-DmD9    775 wing disc ML-DmD16-c3    546 wing disc ML-DmD21    1483 wing disc ML-DmD32    836 haltere disc ML-DmD17-c3    430 eye-antennal disc ML-DmD11    1107 antennal disc ML-DmD20-c5    885 mixed discs ML-DmD4-c1    582 CNS ML-DmBG1-c1    568 CNS ML-DmBG2-c2    389 tumorous blood cells mbn2    394 ovary fGS/OSS    581 ovary OSC    224 ovary OSS    123 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    451 cold shock, 4-day adult    377 heat shock, 4-day adult    507 Cadmium 50 mM 6 hrs, larvae L3    542 Cadmium 50 mM 12 hrs, larvae L3    445 Cadmium 50 mM 48 hrs, 4-day adult    376 Cadmium 100 mM 48 hrs, 4-day adult    384 Copper 0.5 mM 12 hrs, larvae L3    459 Copper 15 mM 48 hrs, 4-day adult    101 Zinc 5 mM 12 hrs, larvae L3    373 Zinc 4.5 mM 48 hrs, 4-day adult    168 Ethanol 2.5% 3 hrs, larvae L3    685 Ethanol 5% 3 hrs, larvae L3    442 Ethanol 10% 3 hrs, larvae L3    533 Caffeine 1.5 mg/ml 4 hrs, larvae L3    462 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    428 Caffeine 25 mg/ml 48 hrs, 4-day adult    310 Paraquat 5 mM 48 hrs, 4-day adult    474 Paraquat 10 mM 48 hrs, 4-day adult    529 Rotenone 2 μg 12 hrs, larvae L3    485 Rotenone 8 μg 12 hrs, larvae L3    638 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (451) cold shock, 4-day adult  (377) heat shock, 4-day adult  (507) Cadmium 50 mM 6 hrs, larvae L3  (542) Cadmium 50 mM 12 hrs, larvae L3  (445) Cadmium 50 mM 48 hrs, 4-day adult  (376) Cadmium 100 mM 48 hrs, 4-day adult  (384) Copper 0.5 mM 12 hrs, larvae L3  (459) Copper 15 mM 48 hrs, 4-day adult  (101) Zinc 5 mM 12 hrs, larvae L3  (373) Zinc 4.5 mM 48 hrs, 4-day adult  (168) Ethanol 2.5% 3 hrs, larvae L3  (685) Ethanol 5% 3 hrs, larvae L3  (442) Ethanol 10% 3 hrs, larvae L3  (533) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (462) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (428) Caffeine 25 mg/ml 48 hrs, 4-day adult  (310) Paraquat 5 mM 48 hrs, 4-day adult  (474) Paraquat 10 mM 48 hrs, 4-day adult  (529) Rotenone 2 μg 12 hrs, larvae L3  (485) Rotenone 8 μg 12 hrs, larvae L3  (638) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (451) cold shock, 4-day adult  (377) heat shock, 4-day adult  (507) Cadmium 50 mM 6 hrs, larvae L3  (542) Cadmium 50 mM 12 hrs, larvae L3  (445) Cadmium 50 mM 48 hrs, 4-day adult  (376) Cadmium 100 mM 48 hrs, 4-day adult  (384) Copper 0.5 mM 12 hrs, larvae L3  (459) Copper 15 mM 48 hrs, 4-day adult  101 Zinc 5 mM 12 hrs, larvae L3  (373) Zinc 4.5 mM 48 hrs, 4-day adult  (168) Ethanol 2.5% 3 hrs, larvae L3  (685) Ethanol 5% 3 hrs, larvae L3  (442) Ethanol 10% 3 hrs, larvae L3  (533) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (462) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (428) Caffeine 25 mg/ml 48 hrs, 4-day adult  (310) Paraquat 5 mM 48 hrs, 4-day adult  (474) Paraquat 10 mM 48 hrs, 4-day adult  (529) Rotenone 2 μg 12 hrs, larvae L3  (485) Rotenone 8 μg 12 hrs, larvae L3  (638) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    451 cold shock, 4-day adult    377 heat shock, 4-day adult    507 Cadmium 50 mM 6 hrs, larvae L3    542 Cadmium 50 mM 12 hrs, larvae L3    445 Cadmium 50 mM 48 hrs, 4-day adult    376 Cadmium 100 mM 48 hrs, 4-day adult    384 Copper 0.5 mM 12 hrs, larvae L3    459 Copper 15 mM 48 hrs, 4-day adult    101 Zinc 5 mM 12 hrs, larvae L3    373 Zinc 4.5 mM 48 hrs, 4-day adult    168 Ethanol 2.5% 3 hrs, larvae L3    685 Ethanol 5% 3 hrs, larvae L3    442 Ethanol 10% 3 hrs, larvae L3    533 Caffeine 1.5 mg/ml 4 hrs, larvae L3    462 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    428 Caffeine 25 mg/ml 48 hrs, 4-day adult    310 Paraquat 5 mM 48 hrs, 4-day adult    474 Paraquat 10 mM 48 hrs, 4-day adult    529 Rotenone 2 μg 12 hrs, larvae L3    485 Rotenone 8 μg 12 hrs, larvae L3    638 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    451 cold shock, 4-day adult    377 heat shock, 4-day adult    507 Cadmium 50 mM 6 hrs, larvae L3    542 Cadmium 50 mM 12 hrs, larvae L3    445 Cadmium 50 mM 48 hrs, 4-day adult    376 Cadmium 100 mM 48 hrs, 4-day adult    384 Copper 0.5 mM 12 hrs, larvae L3    459 Copper 15 mM 48 hrs, 4-day adult    101 Zinc 5 mM 12 hrs, larvae L3    373 Zinc 4.5 mM 48 hrs, 4-day adult    168 Ethanol 2.5% 3 hrs, larvae L3    685 Ethanol 5% 3 hrs, larvae L3    442 Ethanol 10% 3 hrs, larvae L3    533 Caffeine 1.5 mg/ml 4 hrs, larvae L3    462 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    428 Caffeine 25 mg/ml 48 hrs, 4-day adult    310 Paraquat 5 mM 48 hrs, 4-day adult    474 Paraquat 10 mM 48 hrs, 4-day adult    529 Rotenone 2 μg 12 hrs, larvae L3    485 Rotenone 8 μg 12 hrs, larvae L3    638 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (451) cold shock, 4-day adult  (377) heat shock, 4-day adult  (507) Cadmium 50 mM 6 hrs, larvae L3  (542) Cadmium 50 mM 12 hrs, larvae L3  (445) Cadmium 50 mM 48 hrs, 4-day adult  (376) Cadmium 100 mM 48 hrs, 4-day adult  (384) Copper 0.5 mM 12 hrs, larvae L3  (459) Copper 15 mM 48 hrs, 4-day adult  (101) Zinc 5 mM 12 hrs, larvae L3  (373) Zinc 4.5 mM 48 hrs, 4-day adult  (168) Ethanol 2.5% 3 hrs, larvae L3  (685) Ethanol 5% 3 hrs, larvae L3  (442) Ethanol 10% 3 hrs, larvae L3  (533) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (462) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (428) Caffeine 25 mg/ml 48 hrs, 4-day adult  (310) Paraquat 5 mM 48 hrs, 4-day adult  (474) Paraquat 10 mM 48 hrs, 4-day adult  (529) Rotenone 2 μg 12 hrs, larvae L3  (485) Rotenone 8 μg 12 hrs, larvae L3  (638) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (451) cold shock, 4-day adult  (377) heat shock, 4-day adult  (507) Cadmium 50 mM 6 hrs, larvae L3  (542) Cadmium 50 mM 12 hrs, larvae L3  (445) Cadmium 50 mM 48 hrs, 4-day adult  (376) Cadmium 100 mM 48 hrs, 4-day adult  (384) Copper 0.5 mM 12 hrs, larvae L3  (459) Copper 15 mM 48 hrs, 4-day adult  101 Zinc 5 mM 12 hrs, larvae L3  (373) Zinc 4.5 mM 48 hrs, 4-day adult  (168) Ethanol 2.5% 3 hrs, larvae L3  (685) Ethanol 5% 3 hrs, larvae L3  (442) Ethanol 10% 3 hrs, larvae L3  (533) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (462) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (428) Caffeine 25 mg/ml 48 hrs, 4-day adult  (310) Paraquat 5 mM 48 hrs, 4-day adult  (474) Paraquat 10 mM 48 hrs, 4-day adult  (529) Rotenone 2 μg 12 hrs, larvae L3  (485) Rotenone 8 μg 12 hrs, larvae L3  (638) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    451 cold shock, 4-day adult    377 heat shock, 4-day adult    507 Cadmium 50 mM 6 hrs, larvae L3    542 Cadmium 50 mM 12 hrs, larvae L3    445 Cadmium 50 mM 48 hrs, 4-day adult    376 Cadmium 100 mM 48 hrs, 4-day adult    384 Copper 0.5 mM 12 hrs, larvae L3    459 Copper 15 mM 48 hrs, 4-day adult    101 Zinc 5 mM 12 hrs, larvae L3    373 Zinc 4.5 mM 48 hrs, 4-day adult    168 Ethanol 2.5% 3 hrs, larvae L3    685 Ethanol 5% 3 hrs, larvae L3    442 Ethanol 10% 3 hrs, larvae L3    533 Caffeine 1.5 mg/ml 4 hrs, larvae L3    462 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    428 Caffeine 25 mg/ml 48 hrs, 4-day adult    310 Paraquat 5 mM 48 hrs, 4-day adult    474 Paraquat 10 mM 48 hrs, 4-day adult    529 Rotenone 2 μg 12 hrs, larvae L3    485 Rotenone 8 μg 12 hrs, larvae L3    638 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_22 mE1_20_mRNA_expression_cluster_01
External Data & Images
Linkouts	BDGP expression data • GM02242 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0029897 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3203-RB
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL4pnr-MD237 RpL17GD10434 lethal | pupal stage, with Scer\GAL4pnr-MD237 RpL17GD10434 viable RpL17c02747 Sterility Allele fertile RpL17c02747 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of RpL17 Class Mutagen Stocks Known lesion RpL17c02747 piggyBac transposase 2 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of RpL17 Class Mutagen Stocks Known lesion RpL17GD10434 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes RpL17KK100206 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes RpL17NIG.3203R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10434} NA P{KK100206} NA characterization construct P{NIG.3203R} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{PB}RpL17c02747 NA
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 3 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
centrosome duplication inferred from mutant phenotype (Müller et al., 2010) mitotic spindle elongation inferred from mutant phenotype (Goshima et al., 2007) mitotic spindle organization inferred from mutant phenotype (Goshima et al., 2007)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
structural constituent of ribosome inferred from sequence or structural similarity with UniProtKB:P24049 (FlyBase, 1992-)
Biological Process
CV term Evidence References
translation inferred from sequence or structural similarity with UniProtKB:P24049 (FlyBase, 1992-)
Cellular Component
CV term Evidence References
cytosolic large ribosomal subunit inferred from sequence or structural similarity with UniProtKB:P24049 (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions RpL17 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 58099 DroID - A comprehensive database of gene and protein interactions. • FBgn0029897 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31613
Orthologs
OrthoDB Orthologs (55) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG676KKP Dipteran inclusive ortholog search EOG6RJG9T Insect inclusive ortholog search EOG6B5N2K Arthropod inclusive ortholog search EOG6KH1BD Metazoa inclusive ortholog search EOG6X9MCD
Orthologs in Drosophila Species (EOG676KKP)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\RpL17     Drosophila sechellia   Dsec\GM12554 Y   Drosophila erecta   Dere\GG17658 Y   Drosophila yakuba   Dyak\GE16448 Y   Drosophila ananassae   Dana\GF21427 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA16622 Y   Drosophila persimilis   Dper\GL26747 Y   Drosophila willistoni   Dwil\GK16300 Y   Drosophila virilis   Dvir\GJ16610 Y   Drosophila mojavensis   Dmoj\GI15202 Y   Drosophila grimshawi   Dgri\GH12755 Y
Orthologs in non-Drosophila Dipterans (EOG6RJG9T)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\RpL17   Anopheles gambiae Malaria mosquito  Agam\RL17_ANOGA   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ015624
Orthologs in non-Dipteran Insects (EOG6B5N2K)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\RpL17   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG007632   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH20728   Atta cephalotes Leafcutter ant  Acep\ACEP21494   Camponotus floridanus Florida carpenter ant  Cflo\CFLO12981   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL22834   Linepithema humile Argentine ant  Lhum\LH16647   Pogonomyrmex barbatus Red harvester ant  Pbar\PB17381   Solenopsis invicta Red fire ant  Sinv\SINV17571   Acyrthosiphon pisum Pea aphid  Apim\ACYPI008181   Bombyx mori Silkmoth  Bmor\RpL17   Pediculus humanus Human body louse  Phum\PHUM245140   Tribolium castaneum Red flour beetle  Tcas\TC013536
Orthologs in non-Insect Arthropods (EOG6KH1BD)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\RGN   Ixodes scapularis Deer tick  Isca\ISCW005425
Orthologs in non-Arthropod Metazoa (EOG6X9MCD)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\rpl-17   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_014454gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_015818gn   Danio rerio Zebrafish  Drer\zgc:65996   Xenopus tropicalis Western clawed frog  Xtro\rpl17   Gallus gallus Domestic chicken  Ggal\RPL17L   Gallus gallus Domestic chicken  Ggal\ENSGALG00000022174   Mus musculus House mouse  Mmus\Rpl17   Mus musculus House mouse  Mmus\Gm10362   Mus musculus House mouse  Mmus\Rpl17-ps3   Mus musculus House mouse  Mmus\Gm6133   Mus musculus House mouse  Mmus\Gm6613   Mus musculus House mouse  Mmus\Gm5277   Mus musculus House mouse  Mmus\Gm10268   Mus musculus House mouse  Mmus\1600029O15Rik   Rattus norvegicus Norway rat  Rnor\RGD1562905   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000010271   Rattus norvegicus Norway rat  Rnor\RGD1563903   Rattus norvegicus Norway rat  Rnor\RGD1563903   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000021861   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000042688   Rattus norvegicus Norway rat  Rnor\RGD1359290   Rattus norvegicus Norway rat  Rnor\Rpl17   Rattus norvegicus Norway rat  Rnor\RGD1560017   Rattus norvegicus Norway rat  Rnor\ENSRNOG00000019952   Homo sapiens Human  Hsap\RPL17
Human Orthologs (1)
Gene OMIM HGNC Hsap\RPL17
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila sechellia Dsec\GM12554 Drosophila erecta Dere\GG17658 Drosophila yakuba Dyak\GE16448 Drosophila ananassae Dana\GF21427 Drosophila pseudoobscura pseudoobscura Dpse\GA16622 Drosophila persimilis Dper\GL26747 Drosophila willistoni Dwil\GK16300 Drosophila virilis Dvir\GJ16610 Drosophila mojavensis Dmoj\GI15202 Drosophila grimshawi Dgri\GH12755
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	10994 w1118 PBac{PB}RpL17c02747 PBac{PB}c02747
Harvard	- PBac{PB}RpL17c02747
VDRC	v105376 P{KK100206}VIE-260B v41777 w1118; P{GD10434}v41777 v41778 w1118; P{GD10434}v41778
Genomic Clones ( 2 )
	BACR11K20 BACR48O24 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 406 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM02242
Other clones	yak-ad_CG3203 yak-em_CG3203
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT02255 GH02041 GH02141 GH04848 GH06771 GH12980 GH13251 GH13977 GH20464 GH22165 GH22573 GH23063 GH24130 GH24187 GH25304 GH25880 GH28052 GM02292 GM05156 GM07584 GM07680 GM09541 GM12138 GM12365 GM12411 GM13429 GM13514 GM13829 GM14774 GM15441 GM16663 GM19134 GM19519 GM21004 GM21122 GM22658 GM23181 GM24964 GM25106 GM25771 GM26196 GM26802 GM27552 GM28662 GM29085 GM29275 GM29386 GM29671 LD05610 LD08241 LD11177 LD14332 LD22709 LD27815 LD28203 LD28889 LD29926 LD31154 LD36259 LD37807 LD38752 LD40653 LD41364 LD43545 LD45475 LD46994 LP01126 LP04960 LP06912 LP06965 LP09210 LP10103 LP10831 LP14019 LP15338 LP17182 LP19532 LP19948 LP20053 LP22418 LP23143 LP23415 RE02271 RE02316 RE03713 RE13426 RE19655 RH05660 RH08435 RH10595 RH13465 RH14239 RH14245 RH14544 RH14793 RH33834 RH38123 RH40784 RH41802 RH43455 RH46821 RH47635 RH49710 RH49716 RH49803 RH50780 RH51787 RH52002 RH52303 RH52386 RH53972 RH54130 RH54140 RH55235 RH55884 RH56044 RH56284 RH57879 RH57949 RH58378 RH58744 RH59333 RH60944 RH61589 RH61610 RH61615 RH63708 RH64293 RH66628 RH67883 RH69469 RH69655 RH71912 RH72052 RH72907 RH73939 SD02602 SD08131 SD11087 SD11548 SD14280 SD14380 SD15062 SD15372 SD16776 SD17278 SD18003 SD19421 SD19673 SD20114 SD20863 SD21004 SD21212 SD21782 SD21992 SD22031 SD22117 SD23252 SD25646 SD26565
Other clones	62092 74219 82089 82728 123837 147534 152898 161803 274761 473681 521944 522259 522925 523082 524816 525443 525801 527021 527050 527861 556981 556992 557057 557931 558042 568915 568942 569545 569872 569973 572746 572806 Dmel_dig_000333_0620_3749 Dmel_dig_001400_0695_0340 Dmel_dig_002553_0587_3701 Dmel_dig_004346_0639_0385 Dmel_dig_009544_0686_3699 Dmel_dig_009755_0597_0670 Dmel_dig_009775_0687_1618 Dmel_dig_012554_0699_0537 Dmel_dig_013323_0657_3426 Dmel_dig_013695_0597_3393 Dmel_dig_015043_0623_3026 Dmel_dig_015149_0655_1643 Dmel_dig_015235_0708_1215 Dmel_dig_016324_0593_0579 Dmel_dig_017307_0669_1333 Dmel_dig_019672_0647_3308 Dmel_neb_011386_0904_0962 Dmel_neb_014559_0182_1531 EC12751 EC13306 EC31748 EC34093 EC36567 EC39790 EC39968 EC40365 EC40590 EC051807 EK164607 EK190307 EK204038 EK215541 EK216039 EK246657 EK256332 EK266076 EK294209 EK294801 EK302343 EN00517 EN00839 EN01659 EN03036 EN03359 EN06524 EN07163 EN07749 EN08340 EN11813 EN11824 EN11940 EN12656 EN12860 EN14159 EN14228 EN15121 EN15760 EN16012 EN16962 EN17117 ESG0115d.B21_B03 ESG0120c.B21_F12 FGA011E08 FGC008B03 FGH108E01 FGH126F10 FGM103C10 FGM105D01 FGM207D06 FGM208B05 FGM211F11 FGM220E07 FGM227F05 FGM230E08 FGM237D05 FGM307E03 FGM317C07 FGM318H08 GH14255 GH16472 GH19361 GH24337 GH25161 GM03796 GM10976 GM18696 GM22479 GM22835 HL08119 IP02080 IP17029 LD22319 LD25281 LD28781 LD30825 LD35471 LD37384 LD41723 LP05953 LP13783 LP15004 LP17709 LP18204 LP18420 LP21067 LP23394 RE01671 RE02261 RE04575 RE16418 RE23653 RE30095 RE30634 RE32641 RE32880 RE32896 RE44371 RE46435 RE51792 RE56454 RE56466 RE57360 RE58035 RE62410 RE63212 RE70443 RE74539 RH02889 RH04123 RH04489 RH04805 RH06282 RH06370 RH06995 RH07114 RH08122 RH08903 RH11017 RH13951 RH19189 RH20293 RH20755 RH21093 RH22987 RH23327 RH23632 RH24035 RH25140 RH25703 RH26461 RH26532 RH26543 RH27332 RH27461 RH27831 RH30784 RH32058 RH32445 RH32583 RH32995 RH33048 RH33464 RH35436 RH36005 RH36580 RH36703 RH38254 RH38375 RH39437 RH39609 RH39705 RH40179 RH40493 RH44144 RH45211 RH47585 RH49485 RH49866 RH51012 RH51636 RH51865 RH54142 RH54263 RH55174 RH55927 RH56065 RH57916 RH58225 RH59202 RH61360 RH61439 RH61992 RH63111 RH63555 RH63710 RH64376 RH66667 RH71448 RH72128 SD20314 SD20747 UT01306 UT01407 UT01414 UT01573 UT01701 UT01810 UT01955 UT01970 UUGC0221 UUGC0981
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0029897 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31613
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: RpL17 CG3203 (Ashburner and Marygold, 2004.7.2)
Source for database merge of	Source for merge of: CG3203 anon-EST:Posey276 (Bayraktaroglu, 2000.11.2)
Additional comments
Other Comments
	Haploinsufficient locus. (Cook et al., 2012) RNAi screen using dsRNA made from templates generated with primers directed against this gene results in aberrantly short, monopolar spindles when assayed in S2 cells. This phenotype can be observed when the screen is performed with or without Cdc27 dsRNA. (Goshima et al., 2007) Likely Minute gene. (Marygold et al., 2007) RpL17 lies in a gap in deletion coverage. (Marygold et al., 2007)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_132118 NM_167087 NM_167088 NM_167089 RefSeq (Proteins) • NP_572346 NP_727118 NP_727119 NP_727120 DDBJ / EMBL / GenBank • AA567263 AAF46194 AAF46195 AAL28393 AAN09182 AAN09183 AF083294 AW941928 AY060845 Entrez Gene - A searchable database of RefSeq genes. • 31613 UniProtKB/Swiss-Prot • Q9W3W8
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein L22/L17, conserved site (IPR018260) Ribosomal protein L22/L17 (IPR001063) Ribosomal protein L22/L17, eukaryotic/archaeal (IPR005721) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GM02242
Linkouts
	BioGRID - A database of protein and genetic interactions • 58099 DroID - A comprehensive database of gene and protein interactions. • FBgn0029897 DRSC - Results from RNAi screens. • FBgn0029897 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0029897 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3203-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0029897 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 31613 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 31613 modMine - Data generated by the modENCODE project. • FBgn0029897
Synonyms & Secondary IDs ( 7 )
Reported As
Symbol Synonym	anon-EST:Posey276   CG3203 (Wang et al., 2004, Mount, 2001.8.14, Huang et al., 2004, Legube et al., 2006, Huang et al., 2005, Goshima et al., 2007, Keleman et al., 2009.8.5, Marygold et al., 2007, Cammarato et al., 2011, Parisi et al., 2004) mRpL17 (Page et al., 2005) RpL17 (Goshima et al., 2007, Kallappagoudar et al., 2010, Umemori et al., 2009, Marygold et al., 2007, Cook et al., 2012) Rpl17 (Gorchakov et al., 2009)
Name Synonym	Ribosomal protein L17 (Ashburner and Marygold, 2004.7.2, Cammarato et al., 2011) ribosomal protein L17 (Huang et al., 2004)
Secondary FlyBase IDs
	FBgn0026274
References ( 35 )
Generate a list of	All references relating to this gene ( 35 )
List References by type	Research paper  ( 15 ) Supplementary material  ( 6 ) Personal communication to FlyBase  ( 9 ) FlyBase analysis  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 2 )
	Cook et al., 2012, Genome Biol. 13(3): R21 The generation of chromosomal deletions to provide extensive coverage and subdivision of the Drosophila melanogaster genome. [FBrf0219066] Booker et al., 2011, BMC Genomics 12: 50 False negative rates in Drosophila cell-based RNAi screens: a case study. [FBrf0212969] Show all research papers ...